Multiple sequence alignment - TraesCS7B01G109000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G109000 chr7B 100.000 3080 0 0 1 3080 125063557 125066636 0.000000e+00 5688.0
1 TraesCS7B01G109000 chr7B 77.338 278 38 14 536 800 738090230 738090495 1.150000e-29 141.0
2 TraesCS7B01G109000 chr7D 94.360 1312 56 11 795 2091 163010185 163011493 0.000000e+00 1997.0
3 TraesCS7B01G109000 chr7D 93.260 727 37 4 2324 3046 163011866 163012584 0.000000e+00 1061.0
4 TraesCS7B01G109000 chr7D 87.969 640 45 16 1 637 163009568 163010178 0.000000e+00 726.0
5 TraesCS7B01G109000 chr7D 83.529 255 32 8 551 799 118445592 118445842 2.390000e-56 230.0
6 TraesCS7B01G109000 chr7D 83.673 98 10 5 371 465 334947518 334947424 1.520000e-13 87.9
7 TraesCS7B01G109000 chr7A 93.136 1253 69 7 1696 2946 163915912 163917149 0.000000e+00 1821.0
8 TraesCS7B01G109000 chr7A 85.833 240 26 5 536 768 34522715 34522953 6.600000e-62 248.0
9 TraesCS7B01G109000 chr7A 100.000 34 0 0 2971 3004 163917154 163917187 2.560000e-06 63.9
10 TraesCS7B01G109000 chr2A 80.496 846 147 17 1221 2054 24002381 24003220 1.560000e-177 632.0
11 TraesCS7B01G109000 chr2A 83.796 216 28 7 242 451 356716479 356716265 6.740000e-47 198.0
12 TraesCS7B01G109000 chr2A 82.609 138 17 5 242 374 344166926 344166791 6.980000e-22 115.0
13 TraesCS7B01G109000 chr2D 79.449 871 163 12 1221 2080 22161438 22162303 1.220000e-168 603.0
14 TraesCS7B01G109000 chr2D 77.968 876 172 18 1217 2080 619605657 619604791 2.100000e-146 529.0
15 TraesCS7B01G109000 chr2D 83.099 284 26 11 536 802 335144970 335145248 3.970000e-59 239.0
16 TraesCS7B01G109000 chr2D 84.186 215 28 6 242 451 285346844 285346631 1.450000e-48 204.0
17 TraesCS7B01G109000 chr2D 86.232 138 12 5 242 374 290569879 290569744 3.200000e-30 143.0
18 TraesCS7B01G109000 chr1B 78.306 862 157 17 1220 2054 664611479 664610621 2.100000e-146 529.0
19 TraesCS7B01G109000 chr2B 77.702 879 176 17 1214 2080 758921776 758922646 1.270000e-143 520.0
20 TraesCS7B01G109000 chr2B 77.341 865 174 18 1217 2067 759176397 759175541 2.760000e-135 492.0
21 TraesCS7B01G109000 chr3B 85.306 245 30 4 536 774 18957377 18957133 6.600000e-62 248.0
22 TraesCS7B01G109000 chr3B 85.306 245 30 4 536 774 19033479 19033235 6.600000e-62 248.0
23 TraesCS7B01G109000 chr3B 84.959 246 30 5 536 774 18998359 18998114 3.070000e-60 243.0
24 TraesCS7B01G109000 chr4A 83.212 274 23 13 549 808 676528419 676528683 2.390000e-56 230.0
25 TraesCS7B01G109000 chr4A 81.818 242 31 9 536 771 724617388 724617622 1.130000e-44 191.0
26 TraesCS7B01G109000 chr6D 84.722 216 23 10 551 760 432969920 432969709 1.120000e-49 207.0
27 TraesCS7B01G109000 chr4B 80.976 205 26 9 242 440 206901862 206902059 1.910000e-32 150.0
28 TraesCS7B01G109000 chr4B 77.670 206 34 8 242 440 191794226 191794426 6.980000e-22 115.0
29 TraesCS7B01G109000 chr4D 89.286 112 7 4 332 440 254266642 254266751 5.360000e-28 135.0
30 TraesCS7B01G109000 chr6B 88.393 112 8 4 332 440 533254922 533255031 2.490000e-26 130.0
31 TraesCS7B01G109000 chr3D 88.393 112 8 4 332 440 210782692 210782583 2.490000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G109000 chr7B 125063557 125066636 3079 False 5688.000000 5688 100.000 1 3080 1 chr7B.!!$F1 3079
1 TraesCS7B01G109000 chr7D 163009568 163012584 3016 False 1261.333333 1997 91.863 1 3046 3 chr7D.!!$F2 3045
2 TraesCS7B01G109000 chr7A 163915912 163917187 1275 False 942.450000 1821 96.568 1696 3004 2 chr7A.!!$F2 1308
3 TraesCS7B01G109000 chr2A 24002381 24003220 839 False 632.000000 632 80.496 1221 2054 1 chr2A.!!$F1 833
4 TraesCS7B01G109000 chr2D 22161438 22162303 865 False 603.000000 603 79.449 1221 2080 1 chr2D.!!$F1 859
5 TraesCS7B01G109000 chr2D 619604791 619605657 866 True 529.000000 529 77.968 1217 2080 1 chr2D.!!$R3 863
6 TraesCS7B01G109000 chr1B 664610621 664611479 858 True 529.000000 529 78.306 1220 2054 1 chr1B.!!$R1 834
7 TraesCS7B01G109000 chr2B 758921776 758922646 870 False 520.000000 520 77.702 1214 2080 1 chr2B.!!$F1 866
8 TraesCS7B01G109000 chr2B 759175541 759176397 856 True 492.000000 492 77.341 1217 2067 1 chr2B.!!$R1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 186 0.164647 GCATATGCTCGCGGATGAAC 59.835 55.0 20.64 0.0 38.21 3.18 F
1053 1070 0.180406 ACTCCAATACCATGGCGACC 59.820 55.0 13.04 0.0 40.46 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1954 1.004918 CCGTCCTGTTCACCTCCAC 60.005 63.158 0.0 0.0 0.0 4.02 R
2799 2997 0.389817 CAACCGTGCGATCCTCAAGA 60.390 55.000 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 4.284490 GCAGGAGTTGTGATAGGATATCCA 59.716 45.833 23.81 10.14 38.89 3.41
33 35 5.568423 GCAGGAGTTGTGATAGGATATCCAG 60.568 48.000 23.81 0.00 38.89 3.86
56 58 3.963676 TAACGCACACACCGTTACT 57.036 47.368 2.67 0.00 45.89 2.24
87 89 5.412640 TCTCGGTAGCGTTTTTAATCATCA 58.587 37.500 14.79 0.00 0.00 3.07
125 127 2.129555 AACAAGAGCTGCATCCCGGT 62.130 55.000 0.00 0.00 0.00 5.28
129 131 3.816367 GAGCTGCATCCCGGTAGCC 62.816 68.421 0.00 0.00 46.14 3.93
139 141 0.254747 CCCGGTAGCCCTTTGAATCA 59.745 55.000 0.00 0.00 0.00 2.57
147 149 3.197664 CCTTTGAATCAGGGAGGGC 57.802 57.895 0.00 0.00 0.00 5.19
149 151 0.749454 CTTTGAATCAGGGAGGGCCG 60.749 60.000 0.00 0.00 33.83 6.13
152 154 1.303282 GAATCAGGGAGGGCCGTTT 59.697 57.895 0.00 0.00 33.83 3.60
153 155 0.323451 GAATCAGGGAGGGCCGTTTT 60.323 55.000 0.00 0.00 33.83 2.43
154 156 0.611896 AATCAGGGAGGGCCGTTTTG 60.612 55.000 0.00 0.00 33.83 2.44
155 157 2.499303 ATCAGGGAGGGCCGTTTTGG 62.499 60.000 0.00 0.00 42.50 3.28
164 166 4.338710 CCGTTTTGGCTCCCGGGA 62.339 66.667 25.06 25.06 36.84 5.14
165 167 2.746277 CGTTTTGGCTCCCGGGAG 60.746 66.667 41.29 41.29 44.56 4.30
184 186 0.164647 GCATATGCTCGCGGATGAAC 59.835 55.000 20.64 0.00 38.21 3.18
193 195 3.544244 GCTCGCGGATGAACAGTAAATTC 60.544 47.826 6.13 0.00 0.00 2.17
196 198 4.092821 TCGCGGATGAACAGTAAATTCAAG 59.907 41.667 6.13 0.00 39.43 3.02
201 203 7.542130 GCGGATGAACAGTAAATTCAAGAAAAT 59.458 33.333 0.00 0.00 39.43 1.82
202 204 8.853345 CGGATGAACAGTAAATTCAAGAAAATG 58.147 33.333 0.00 0.00 39.43 2.32
203 205 9.696917 GGATGAACAGTAAATTCAAGAAAATGT 57.303 29.630 0.00 0.00 39.43 2.71
269 271 2.620627 CCCCAAGTGTAATCCTTCCCAC 60.621 54.545 0.00 0.00 0.00 4.61
278 280 6.002082 GTGTAATCCTTCCCACTTTGTAACT 58.998 40.000 0.00 0.00 0.00 2.24
316 318 5.652014 TCATGAGTATTTCCATGTGGGTTTC 59.348 40.000 0.00 0.00 40.59 2.78
409 411 2.241160 TGCATTGTGCCTCTTGTCATT 58.759 42.857 0.00 0.00 44.23 2.57
484 486 6.302269 ACTTGATATGGGCTTCTATTCTTGG 58.698 40.000 0.00 0.00 0.00 3.61
486 488 1.972872 ATGGGCTTCTATTCTTGGCG 58.027 50.000 0.00 0.00 0.00 5.69
515 517 7.236640 GTCTCCCCAGATTCCTAAGAATAAGAT 59.763 40.741 0.00 0.00 42.93 2.40
516 518 7.456269 TCTCCCCAGATTCCTAAGAATAAGATC 59.544 40.741 0.00 0.00 42.93 2.75
517 519 7.082316 TCCCCAGATTCCTAAGAATAAGATCA 58.918 38.462 0.00 0.00 42.93 2.92
531 533 5.909621 ATAAGATCACATATTGGGCATGC 57.090 39.130 9.90 9.90 0.00 4.06
545 547 1.401018 GGCATGCCAAGTTCGTGTTAC 60.401 52.381 32.08 0.00 35.81 2.50
547 549 2.739913 GCATGCCAAGTTCGTGTTACTA 59.260 45.455 6.36 0.00 0.00 1.82
550 552 3.247442 TGCCAAGTTCGTGTTACTATCG 58.753 45.455 0.00 0.00 0.00 2.92
598 600 4.208460 CGAAAAGAAGCAGTAGTGTTTCGA 59.792 41.667 20.09 0.00 45.82 3.71
599 601 5.405331 AAAAGAAGCAGTAGTGTTTCGAC 57.595 39.130 18.08 0.00 45.82 4.20
601 603 1.719780 GAAGCAGTAGTGTTTCGACGG 59.280 52.381 10.86 0.00 34.65 4.79
637 639 1.523154 GGCGTGCCATTTGGTCTTCA 61.523 55.000 5.89 0.00 37.57 3.02
638 640 0.313672 GCGTGCCATTTGGTCTTCAA 59.686 50.000 0.00 0.00 37.57 2.69
641 643 3.652274 CGTGCCATTTGGTCTTCAATTT 58.348 40.909 0.00 0.00 37.57 1.82
642 644 3.429543 CGTGCCATTTGGTCTTCAATTTG 59.570 43.478 0.00 0.00 37.57 2.32
643 645 4.379652 GTGCCATTTGGTCTTCAATTTGT 58.620 39.130 0.00 0.00 37.57 2.83
644 646 4.815846 GTGCCATTTGGTCTTCAATTTGTT 59.184 37.500 0.00 0.00 37.57 2.83
645 647 5.296531 GTGCCATTTGGTCTTCAATTTGTTT 59.703 36.000 0.00 0.00 37.57 2.83
646 648 5.884792 TGCCATTTGGTCTTCAATTTGTTTT 59.115 32.000 0.00 0.00 37.57 2.43
647 649 6.376581 TGCCATTTGGTCTTCAATTTGTTTTT 59.623 30.769 0.00 0.00 37.57 1.94
648 650 6.912051 GCCATTTGGTCTTCAATTTGTTTTTC 59.088 34.615 0.00 0.00 37.57 2.29
649 651 7.201723 GCCATTTGGTCTTCAATTTGTTTTTCT 60.202 33.333 0.00 0.00 37.57 2.52
650 652 8.676401 CCATTTGGTCTTCAATTTGTTTTTCTT 58.324 29.630 0.00 0.00 34.98 2.52
653 655 9.890352 TTTGGTCTTCAATTTGTTTTTCTTTTG 57.110 25.926 0.00 0.00 34.98 2.44
654 656 7.525759 TGGTCTTCAATTTGTTTTTCTTTTGC 58.474 30.769 0.00 0.00 0.00 3.68
655 657 7.173907 TGGTCTTCAATTTGTTTTTCTTTTGCA 59.826 29.630 0.00 0.00 0.00 4.08
656 658 7.481483 GGTCTTCAATTTGTTTTTCTTTTGCAC 59.519 33.333 0.00 0.00 0.00 4.57
657 659 8.014517 GTCTTCAATTTGTTTTTCTTTTGCACA 58.985 29.630 0.00 0.00 0.00 4.57
658 660 8.728833 TCTTCAATTTGTTTTTCTTTTGCACAT 58.271 25.926 0.00 0.00 0.00 3.21
659 661 8.670804 TTCAATTTGTTTTTCTTTTGCACATG 57.329 26.923 0.00 0.00 0.00 3.21
660 662 6.746364 TCAATTTGTTTTTCTTTTGCACATGC 59.254 30.769 0.00 0.00 42.50 4.06
661 663 4.612932 TTGTTTTTCTTTTGCACATGCC 57.387 36.364 0.49 0.00 41.18 4.40
662 664 3.603532 TGTTTTTCTTTTGCACATGCCA 58.396 36.364 0.49 0.00 41.18 4.92
663 665 4.005650 TGTTTTTCTTTTGCACATGCCAA 58.994 34.783 0.49 0.00 41.18 4.52
664 666 4.456911 TGTTTTTCTTTTGCACATGCCAAA 59.543 33.333 0.49 7.75 41.18 3.28
665 667 5.048504 TGTTTTTCTTTTGCACATGCCAAAA 60.049 32.000 18.30 18.30 41.18 2.44
666 668 5.831702 TTTTCTTTTGCACATGCCAAAAT 57.168 30.435 19.17 0.00 41.18 1.82
667 669 4.815040 TTCTTTTGCACATGCCAAAATG 57.185 36.364 19.17 14.74 41.18 2.32
668 670 2.548904 TCTTTTGCACATGCCAAAATGC 59.451 40.909 19.17 10.13 41.18 3.56
669 671 2.257691 TTTGCACATGCCAAAATGCT 57.742 40.000 9.05 0.00 41.18 3.79
670 672 2.257691 TTGCACATGCCAAAATGCTT 57.742 40.000 0.49 0.00 41.18 3.91
671 673 3.397849 TTGCACATGCCAAAATGCTTA 57.602 38.095 0.49 0.00 41.18 3.09
672 674 3.397849 TGCACATGCCAAAATGCTTAA 57.602 38.095 0.49 0.00 41.18 1.85
673 675 3.065655 TGCACATGCCAAAATGCTTAAC 58.934 40.909 0.49 0.00 41.18 2.01
674 676 3.244146 TGCACATGCCAAAATGCTTAACT 60.244 39.130 0.49 0.00 41.18 2.24
675 677 3.747529 GCACATGCCAAAATGCTTAACTT 59.252 39.130 0.00 0.00 35.16 2.66
676 678 4.213906 GCACATGCCAAAATGCTTAACTTT 59.786 37.500 0.00 0.00 35.16 2.66
677 679 5.277925 GCACATGCCAAAATGCTTAACTTTT 60.278 36.000 0.00 0.00 35.16 2.27
678 680 6.727215 CACATGCCAAAATGCTTAACTTTTT 58.273 32.000 0.00 0.00 36.38 1.94
679 681 6.633634 CACATGCCAAAATGCTTAACTTTTTG 59.366 34.615 14.86 14.86 45.85 2.44
680 682 6.318396 ACATGCCAAAATGCTTAACTTTTTGT 59.682 30.769 17.52 5.92 45.29 2.83
681 683 6.356757 TGCCAAAATGCTTAACTTTTTGTC 57.643 33.333 17.52 11.53 45.29 3.18
682 684 6.112058 TGCCAAAATGCTTAACTTTTTGTCT 58.888 32.000 17.52 0.00 45.29 3.41
683 685 6.257630 TGCCAAAATGCTTAACTTTTTGTCTC 59.742 34.615 17.52 11.74 45.29 3.36
684 686 6.257630 GCCAAAATGCTTAACTTTTTGTCTCA 59.742 34.615 17.52 0.00 45.29 3.27
685 687 7.201600 GCCAAAATGCTTAACTTTTTGTCTCAA 60.202 33.333 17.52 0.00 45.29 3.02
686 688 8.663911 CCAAAATGCTTAACTTTTTGTCTCAAA 58.336 29.630 17.52 0.00 45.29 2.69
692 694 8.174422 TGCTTAACTTTTTGTCTCAAAATTTGC 58.826 29.630 0.00 8.88 0.00 3.68
693 695 8.174422 GCTTAACTTTTTGTCTCAAAATTTGCA 58.826 29.630 0.00 0.00 0.00 4.08
694 696 9.693157 CTTAACTTTTTGTCTCAAAATTTGCAG 57.307 29.630 0.00 0.44 0.00 4.41
695 697 6.667007 ACTTTTTGTCTCAAAATTTGCAGG 57.333 33.333 0.00 0.00 0.00 4.85
696 698 6.172630 ACTTTTTGTCTCAAAATTTGCAGGT 58.827 32.000 0.00 0.00 0.00 4.00
697 699 7.327214 ACTTTTTGTCTCAAAATTTGCAGGTA 58.673 30.769 0.00 0.00 0.00 3.08
698 700 7.492344 ACTTTTTGTCTCAAAATTTGCAGGTAG 59.508 33.333 0.00 0.00 0.00 3.18
699 701 4.503741 TGTCTCAAAATTTGCAGGTAGC 57.496 40.909 0.00 0.00 45.96 3.58
712 714 4.278678 GCAGGTAGCATTTGTATGTGAC 57.721 45.455 0.00 0.00 44.79 3.67
713 715 3.689161 GCAGGTAGCATTTGTATGTGACA 59.311 43.478 0.00 0.00 44.79 3.58
714 716 4.201851 GCAGGTAGCATTTGTATGTGACAG 60.202 45.833 0.00 0.00 44.79 3.51
715 717 5.178061 CAGGTAGCATTTGTATGTGACAGA 58.822 41.667 0.00 0.00 39.88 3.41
716 718 5.063944 CAGGTAGCATTTGTATGTGACAGAC 59.936 44.000 2.94 2.94 39.88 3.51
717 719 4.332819 GGTAGCATTTGTATGTGACAGACC 59.667 45.833 7.98 0.00 39.88 3.85
718 720 4.019792 AGCATTTGTATGTGACAGACCA 57.980 40.909 7.98 0.00 39.88 4.02
719 721 3.753272 AGCATTTGTATGTGACAGACCAC 59.247 43.478 7.98 0.00 39.88 4.16
770 772 7.665690 ACATTTGAAAAATTATTTTTGGGCCC 58.334 30.769 17.59 17.59 42.51 5.80
771 773 7.288621 ACATTTGAAAAATTATTTTTGGGCCCA 59.711 29.630 24.45 24.45 42.51 5.36
772 774 7.846101 TTTGAAAAATTATTTTTGGGCCCAT 57.154 28.000 29.23 14.03 42.51 4.00
773 775 6.830873 TGAAAAATTATTTTTGGGCCCATG 57.169 33.333 29.23 0.00 42.51 3.66
774 776 5.184671 TGAAAAATTATTTTTGGGCCCATGC 59.815 36.000 29.23 5.34 42.51 4.06
775 777 4.589647 AAATTATTTTTGGGCCCATGCT 57.410 36.364 29.23 13.54 37.74 3.79
776 778 3.843893 ATTATTTTTGGGCCCATGCTC 57.156 42.857 29.23 0.00 38.98 4.26
777 779 1.494960 TATTTTTGGGCCCATGCTCC 58.505 50.000 29.23 0.00 37.06 4.70
778 780 1.273986 ATTTTTGGGCCCATGCTCCC 61.274 55.000 29.23 12.22 42.93 4.30
779 781 4.757355 TTTGGGCCCATGCTCCCG 62.757 66.667 29.23 0.00 45.60 5.14
791 793 3.924507 CTCCCGGGAGCCAAATTG 58.075 61.111 36.90 12.91 35.31 2.32
792 794 1.302949 CTCCCGGGAGCCAAATTGA 59.697 57.895 36.90 4.01 35.31 2.57
793 795 0.749454 CTCCCGGGAGCCAAATTGAG 60.749 60.000 36.90 11.29 35.31 3.02
798 800 1.202348 CGGGAGCCAAATTGAGTTTCC 59.798 52.381 0.00 0.00 0.00 3.13
799 801 2.247358 GGGAGCCAAATTGAGTTTCCA 58.753 47.619 0.00 0.00 0.00 3.53
804 806 5.511202 GGAGCCAAATTGAGTTTCCATTTCA 60.511 40.000 0.00 0.00 0.00 2.69
811 813 9.210329 CAAATTGAGTTTCCATTTCAATCATCA 57.790 29.630 0.05 0.00 39.82 3.07
834 836 8.801882 TCATTTTACTATTCCTTGGTTCGATT 57.198 30.769 0.00 0.00 0.00 3.34
855 857 1.550976 CGTCAGCTAAGAGGGTCCTTT 59.449 52.381 0.00 0.00 0.00 3.11
861 863 5.546499 TCAGCTAAGAGGGTCCTTTTCTTAA 59.454 40.000 10.30 0.00 34.16 1.85
863 865 6.715264 CAGCTAAGAGGGTCCTTTTCTTAAAA 59.285 38.462 10.30 0.00 34.16 1.52
864 866 7.230712 CAGCTAAGAGGGTCCTTTTCTTAAAAA 59.769 37.037 10.30 0.00 34.16 1.94
919 927 4.567159 GGTAGCGAAAGACTACATTTCCAG 59.433 45.833 3.60 0.00 40.25 3.86
970 978 1.271856 TATTCTGCTCGGGTCACCAA 58.728 50.000 0.00 0.00 36.13 3.67
1041 1053 1.133513 TGGCAGTCCAACAACTCCAAT 60.134 47.619 0.00 0.00 39.99 3.16
1042 1054 2.107378 TGGCAGTCCAACAACTCCAATA 59.893 45.455 0.00 0.00 39.99 1.90
1053 1070 0.180406 ACTCCAATACCATGGCGACC 59.820 55.000 13.04 0.00 40.46 4.79
1102 1119 0.796312 CCCGTTCAAGGATGTTGTCG 59.204 55.000 0.00 0.00 0.00 4.35
1104 1121 1.194547 CCGTTCAAGGATGTTGTCGTG 59.805 52.381 0.00 0.00 0.00 4.35
1142 1159 2.513204 CACCATGCCGGCTGAGAG 60.513 66.667 29.70 14.11 39.03 3.20
1143 1160 3.790437 ACCATGCCGGCTGAGAGG 61.790 66.667 29.70 22.33 39.03 3.69
1182 1199 2.279517 GTCCTGGTATCGGCGCTG 60.280 66.667 10.86 10.86 0.00 5.18
1232 1250 1.831652 AACAAGCTCCGCTGCTACCT 61.832 55.000 0.00 0.00 43.24 3.08
1458 1476 1.961277 CGTGCCTTTTCTGGACGCT 60.961 57.895 0.00 0.00 0.00 5.07
1774 1819 2.488545 GTGCTCTTCTTGAGGTACGAGA 59.511 50.000 0.00 0.00 42.87 4.04
2126 2269 2.850060 GTGTCGCGACGAGATCAATTTA 59.150 45.455 31.88 9.04 36.23 1.40
2277 2475 1.147473 CACACAGCTCGCATACACAA 58.853 50.000 0.00 0.00 0.00 3.33
2278 2476 1.127397 CACACAGCTCGCATACACAAG 59.873 52.381 0.00 0.00 0.00 3.16
2280 2478 0.320683 ACAGCTCGCATACACAAGCA 60.321 50.000 0.00 0.00 37.22 3.91
2281 2479 1.012086 CAGCTCGCATACACAAGCAT 58.988 50.000 0.00 0.00 37.22 3.79
2285 2483 2.285834 GCTCGCATACACAAGCATACAC 60.286 50.000 0.00 0.00 34.86 2.90
2292 2490 1.001520 ACACAAGCATACACCGCAGTA 59.998 47.619 0.00 0.00 0.00 2.74
2310 2508 2.824341 AGTAACAGTACTCCTGAACCCG 59.176 50.000 0.00 0.00 44.49 5.28
2314 2512 0.964358 AGTACTCCTGAACCCGGTCG 60.964 60.000 0.00 0.00 0.00 4.79
2407 2605 4.702081 GCACGACGACGGTGAGCT 62.702 66.667 12.58 0.00 44.46 4.09
2532 2730 2.184579 GCCTCCTCGTTTCCCTCG 59.815 66.667 0.00 0.00 0.00 4.63
2604 2802 1.524863 CCTGGACCTTGACGTCGTCT 61.525 60.000 24.75 5.74 33.30 4.18
2748 2946 0.250513 AGAAGAGGTCCGCCATTGAC 59.749 55.000 0.00 0.00 37.19 3.18
2784 2982 3.873026 CTCGGATGGGATCGGCTGC 62.873 68.421 0.00 0.00 0.00 5.25
2800 2998 3.555428 GCGACTGCAGTTGAGGTC 58.445 61.111 33.87 14.88 42.15 3.85
2826 3024 1.933115 ATCGCACGGTTGGGAATTGC 61.933 55.000 0.00 0.00 46.84 3.56
2867 3066 1.334689 CGAGTTGGGAAAAAGGCGAAC 60.335 52.381 0.00 0.00 0.00 3.95
2887 3086 3.622060 AACTGGAACGATGGGGGCG 62.622 63.158 0.00 0.00 0.00 6.13
2895 3094 1.056660 ACGATGGGGGCGATAAATCT 58.943 50.000 0.00 0.00 0.00 2.40
2928 3127 1.226046 CGTCGACGTCAGAGCGATT 60.226 57.895 29.08 0.00 36.37 3.34
2937 3137 2.476352 CGTCAGAGCGATTTTCGAGAGA 60.476 50.000 0.32 0.00 43.74 3.10
3013 3215 9.149225 CTTCTGGAGTATGTATGCTTTGATATC 57.851 37.037 0.00 0.00 0.00 1.63
3023 3225 7.661968 TGTATGCTTTGATATCTCTGTACTCC 58.338 38.462 3.98 0.00 0.00 3.85
3046 3248 1.528129 GGAACAGTTCCTTCAGCTGG 58.472 55.000 23.40 0.00 46.57 4.85
3047 3249 1.202818 GGAACAGTTCCTTCAGCTGGT 60.203 52.381 23.40 0.00 46.57 4.00
3048 3250 2.576615 GAACAGTTCCTTCAGCTGGTT 58.423 47.619 15.13 7.16 34.79 3.67
3049 3251 1.972872 ACAGTTCCTTCAGCTGGTTG 58.027 50.000 15.13 4.24 34.79 3.77
3050 3252 0.595095 CAGTTCCTTCAGCTGGTTGC 59.405 55.000 15.13 0.00 43.29 4.17
3072 3274 3.190878 GGCATCTTCAGCCGTTGG 58.809 61.111 0.00 0.00 43.15 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.200434 ACAAACTGGATATCCTATCACAACT 57.800 36.000 22.35 0.00 36.82 3.16
32 34 0.653636 CGGTGTGTGCGTTACAAACT 59.346 50.000 12.79 0.00 45.24 2.66
33 35 0.374410 ACGGTGTGTGCGTTACAAAC 59.626 50.000 6.69 6.69 45.19 2.93
56 58 1.108776 ACGCTACCGAGATGCCTTTA 58.891 50.000 0.00 0.00 38.29 1.85
105 107 0.107703 CCGGGATGCAGCTCTTGTTA 60.108 55.000 0.00 0.00 0.00 2.41
112 114 3.866582 GGCTACCGGGATGCAGCT 61.867 66.667 6.32 0.00 34.41 4.24
129 131 0.396278 GGCCCTCCCTGATTCAAAGG 60.396 60.000 0.00 3.49 34.31 3.11
147 149 4.338710 TCCCGGGAGCCAAAACGG 62.339 66.667 22.63 0.00 45.57 4.44
165 167 0.164647 GTTCATCCGCGAGCATATGC 59.835 55.000 20.36 20.36 42.49 3.14
166 168 1.458445 CTGTTCATCCGCGAGCATATG 59.542 52.381 8.23 0.00 0.00 1.78
167 169 1.069204 ACTGTTCATCCGCGAGCATAT 59.931 47.619 8.23 0.00 0.00 1.78
168 170 0.459899 ACTGTTCATCCGCGAGCATA 59.540 50.000 8.23 0.00 0.00 3.14
169 171 0.459899 TACTGTTCATCCGCGAGCAT 59.540 50.000 8.23 0.00 0.00 3.79
170 172 0.245266 TTACTGTTCATCCGCGAGCA 59.755 50.000 8.23 0.00 0.00 4.26
171 173 1.355971 TTTACTGTTCATCCGCGAGC 58.644 50.000 8.23 0.00 0.00 5.03
172 174 3.616821 TGAATTTACTGTTCATCCGCGAG 59.383 43.478 8.23 0.00 31.07 5.03
175 177 5.545658 TCTTGAATTTACTGTTCATCCGC 57.454 39.130 0.00 0.00 35.68 5.54
177 179 9.696917 ACATTTTCTTGAATTTACTGTTCATCC 57.303 29.630 0.00 0.00 35.68 3.51
250 252 3.721087 AGTGGGAAGGATTACACTTGG 57.279 47.619 0.00 0.00 41.69 3.61
265 267 4.404394 AGGTTGGAAAAGTTACAAAGTGGG 59.596 41.667 0.00 0.00 0.00 4.61
409 411 9.255304 CACATAATGATCATGATGAAATGCAAA 57.745 29.630 31.78 0.00 34.04 3.68
448 450 7.293073 AGCCCATATCAAGTCACTTCATAAAT 58.707 34.615 0.00 0.00 0.00 1.40
470 472 0.819666 CCCCGCCAAGAATAGAAGCC 60.820 60.000 0.00 0.00 0.00 4.35
503 505 8.853077 TGCCCAATATGTGATCTTATTCTTAG 57.147 34.615 0.00 0.00 0.00 2.18
505 507 7.309621 GCATGCCCAATATGTGATCTTATTCTT 60.310 37.037 6.36 0.00 0.00 2.52
515 517 3.920278 TGGCATGCCCAATATGTGA 57.080 47.368 33.44 9.03 41.82 3.58
531 533 3.247442 TGCGATAGTAACACGAACTTGG 58.753 45.455 0.00 0.00 39.35 3.61
580 582 2.607282 CCGTCGAAACACTACTGCTTCT 60.607 50.000 0.00 0.00 0.00 2.85
582 584 1.068127 ACCGTCGAAACACTACTGCTT 59.932 47.619 0.00 0.00 0.00 3.91
587 589 4.519191 TTTTTCACCGTCGAAACACTAC 57.481 40.909 0.00 0.00 34.68 2.73
624 626 8.212317 AGAAAAACAAATTGAAGACCAAATGG 57.788 30.769 0.00 0.00 38.43 3.16
637 639 6.035217 GGCATGTGCAAAAGAAAAACAAATT 58.965 32.000 7.36 0.00 44.36 1.82
638 640 5.125097 TGGCATGTGCAAAAGAAAAACAAAT 59.875 32.000 7.36 0.00 44.36 2.32
641 643 3.603532 TGGCATGTGCAAAAGAAAAACA 58.396 36.364 7.36 0.00 44.36 2.83
642 644 4.612932 TTGGCATGTGCAAAAGAAAAAC 57.387 36.364 7.36 0.00 44.36 2.43
643 645 5.633830 TTTTGGCATGTGCAAAAGAAAAA 57.366 30.435 7.53 2.22 43.99 1.94
644 646 5.579718 CATTTTGGCATGTGCAAAAGAAAA 58.420 33.333 7.53 4.75 43.99 2.29
645 647 4.497674 GCATTTTGGCATGTGCAAAAGAAA 60.498 37.500 7.53 0.00 43.99 2.52
646 648 3.003482 GCATTTTGGCATGTGCAAAAGAA 59.997 39.130 7.53 0.00 43.99 2.52
647 649 2.548904 GCATTTTGGCATGTGCAAAAGA 59.451 40.909 7.53 1.26 43.99 2.52
648 650 2.550606 AGCATTTTGGCATGTGCAAAAG 59.449 40.909 17.59 0.00 43.99 2.27
649 651 2.573369 AGCATTTTGGCATGTGCAAAA 58.427 38.095 17.59 5.36 41.81 2.44
650 652 2.257691 AGCATTTTGGCATGTGCAAA 57.742 40.000 17.59 0.00 44.36 3.68
651 653 2.257691 AAGCATTTTGGCATGTGCAA 57.742 40.000 17.59 0.00 44.36 4.08
652 654 3.065655 GTTAAGCATTTTGGCATGTGCA 58.934 40.909 17.59 0.00 44.36 4.57
653 655 3.328505 AGTTAAGCATTTTGGCATGTGC 58.671 40.909 10.20 10.20 41.14 4.57
654 656 5.927954 AAAGTTAAGCATTTTGGCATGTG 57.072 34.783 0.00 0.00 35.83 3.21
655 657 6.318396 ACAAAAAGTTAAGCATTTTGGCATGT 59.682 30.769 17.63 7.14 45.01 3.21
656 658 6.727215 ACAAAAAGTTAAGCATTTTGGCATG 58.273 32.000 17.63 0.00 45.01 4.06
657 659 6.940831 ACAAAAAGTTAAGCATTTTGGCAT 57.059 29.167 17.63 2.78 45.01 4.40
658 660 6.356757 GACAAAAAGTTAAGCATTTTGGCA 57.643 33.333 15.89 0.00 46.95 4.92
660 662 7.769272 TGAGACAAAAAGTTAAGCATTTTGG 57.231 32.000 17.63 8.36 45.01 3.28
666 668 8.174422 GCAAATTTTGAGACAAAAAGTTAAGCA 58.826 29.630 13.26 0.00 35.73 3.91
667 669 8.174422 TGCAAATTTTGAGACAAAAAGTTAAGC 58.826 29.630 13.26 11.10 35.73 3.09
668 670 9.693157 CTGCAAATTTTGAGACAAAAAGTTAAG 57.307 29.630 13.26 6.07 35.73 1.85
669 671 8.663911 CCTGCAAATTTTGAGACAAAAAGTTAA 58.336 29.630 13.26 1.27 35.73 2.01
670 672 7.821846 ACCTGCAAATTTTGAGACAAAAAGTTA 59.178 29.630 13.26 1.10 35.73 2.24
671 673 6.654582 ACCTGCAAATTTTGAGACAAAAAGTT 59.345 30.769 13.26 8.04 37.70 2.66
672 674 6.172630 ACCTGCAAATTTTGAGACAAAAAGT 58.827 32.000 13.26 3.21 32.81 2.66
673 675 6.667007 ACCTGCAAATTTTGAGACAAAAAG 57.333 33.333 13.26 6.29 32.81 2.27
674 676 6.257630 GCTACCTGCAAATTTTGAGACAAAAA 59.742 34.615 13.26 0.00 42.31 1.94
675 677 5.752955 GCTACCTGCAAATTTTGAGACAAAA 59.247 36.000 13.26 11.14 42.31 2.44
676 678 5.288804 GCTACCTGCAAATTTTGAGACAAA 58.711 37.500 13.26 0.00 42.31 2.83
677 679 4.870363 GCTACCTGCAAATTTTGAGACAA 58.130 39.130 13.26 0.00 42.31 3.18
678 680 4.503741 GCTACCTGCAAATTTTGAGACA 57.496 40.909 13.26 1.10 42.31 3.41
687 689 8.924315 TGTCACATACAAATGCTACCTGCAAAT 61.924 37.037 0.00 0.00 45.11 2.32
688 690 7.687874 TGTCACATACAAATGCTACCTGCAAA 61.688 38.462 0.00 0.00 45.11 3.68
689 691 6.264274 TGTCACATACAAATGCTACCTGCAA 61.264 40.000 0.00 0.00 45.11 4.08
690 692 4.805609 TGTCACATACAAATGCTACCTGCA 60.806 41.667 0.00 0.00 45.68 4.41
691 693 3.689161 TGTCACATACAAATGCTACCTGC 59.311 43.478 0.00 0.00 36.50 4.85
692 694 5.063944 GTCTGTCACATACAAATGCTACCTG 59.936 44.000 0.00 0.00 37.74 4.00
693 695 5.178797 GTCTGTCACATACAAATGCTACCT 58.821 41.667 0.00 0.00 37.74 3.08
694 696 4.332819 GGTCTGTCACATACAAATGCTACC 59.667 45.833 0.00 0.00 37.74 3.18
695 697 4.935205 TGGTCTGTCACATACAAATGCTAC 59.065 41.667 0.00 0.00 37.74 3.58
696 698 4.935205 GTGGTCTGTCACATACAAATGCTA 59.065 41.667 0.00 0.00 37.74 3.49
697 699 3.753272 GTGGTCTGTCACATACAAATGCT 59.247 43.478 0.00 0.00 37.74 3.79
698 700 3.501828 TGTGGTCTGTCACATACAAATGC 59.498 43.478 0.00 0.00 42.05 3.56
744 746 8.797438 GGGCCCAAAAATAATTTTTCAAATGTA 58.203 29.630 19.95 0.00 40.65 2.29
745 747 7.288621 TGGGCCCAAAAATAATTTTTCAAATGT 59.711 29.630 26.33 0.00 40.65 2.71
746 748 7.664758 TGGGCCCAAAAATAATTTTTCAAATG 58.335 30.769 26.33 0.00 40.65 2.32
747 749 7.846101 TGGGCCCAAAAATAATTTTTCAAAT 57.154 28.000 26.33 0.00 40.65 2.32
748 750 7.664758 CATGGGCCCAAAAATAATTTTTCAAA 58.335 30.769 32.58 0.00 40.65 2.69
749 751 6.294955 GCATGGGCCCAAAAATAATTTTTCAA 60.295 34.615 32.58 0.00 40.65 2.69
750 752 5.184671 GCATGGGCCCAAAAATAATTTTTCA 59.815 36.000 32.58 0.00 40.65 2.69
751 753 5.418524 AGCATGGGCCCAAAAATAATTTTTC 59.581 36.000 32.58 1.71 39.84 2.29
752 754 5.331906 AGCATGGGCCCAAAAATAATTTTT 58.668 33.333 32.58 3.92 41.39 1.94
753 755 4.933134 AGCATGGGCCCAAAAATAATTTT 58.067 34.783 32.58 4.59 42.56 1.82
754 756 4.525996 GAGCATGGGCCCAAAAATAATTT 58.474 39.130 32.58 5.53 42.56 1.82
755 757 3.117926 GGAGCATGGGCCCAAAAATAATT 60.118 43.478 32.58 6.47 42.56 1.40
756 758 2.439135 GGAGCATGGGCCCAAAAATAAT 59.561 45.455 32.58 7.43 42.56 1.28
757 759 1.836802 GGAGCATGGGCCCAAAAATAA 59.163 47.619 32.58 2.38 42.56 1.40
758 760 1.494960 GGAGCATGGGCCCAAAAATA 58.505 50.000 32.58 3.36 42.56 1.40
759 761 1.273986 GGGAGCATGGGCCCAAAAAT 61.274 55.000 32.58 15.73 44.07 1.82
760 762 1.917787 GGGAGCATGGGCCCAAAAA 60.918 57.895 32.58 4.86 44.07 1.94
761 763 2.284552 GGGAGCATGGGCCCAAAA 60.285 61.111 32.58 5.36 44.07 2.44
762 764 4.757355 CGGGAGCATGGGCCCAAA 62.757 66.667 32.58 6.36 44.94 3.28
774 776 0.749454 CTCAATTTGGCTCCCGGGAG 60.749 60.000 41.29 41.29 44.56 4.30
775 777 1.302949 CTCAATTTGGCTCCCGGGA 59.697 57.895 25.06 25.06 0.00 5.14
776 778 0.611896 AACTCAATTTGGCTCCCGGG 60.612 55.000 16.85 16.85 0.00 5.73
777 779 1.202348 GAAACTCAATTTGGCTCCCGG 59.798 52.381 0.00 0.00 0.00 5.73
778 780 1.202348 GGAAACTCAATTTGGCTCCCG 59.798 52.381 0.00 0.00 0.00 5.14
779 781 2.247358 TGGAAACTCAATTTGGCTCCC 58.753 47.619 0.00 0.00 0.00 4.30
780 782 4.541973 AATGGAAACTCAATTTGGCTCC 57.458 40.909 0.00 0.00 0.00 4.70
781 783 5.540911 TGAAATGGAAACTCAATTTGGCTC 58.459 37.500 0.00 0.00 0.00 4.70
782 784 5.549742 TGAAATGGAAACTCAATTTGGCT 57.450 34.783 0.00 0.00 0.00 4.75
783 785 6.427547 TGATTGAAATGGAAACTCAATTTGGC 59.572 34.615 0.00 0.00 39.34 4.52
784 786 7.966246 TGATTGAAATGGAAACTCAATTTGG 57.034 32.000 0.00 0.00 39.34 3.28
785 787 9.210329 TGATGATTGAAATGGAAACTCAATTTG 57.790 29.630 0.00 0.00 39.34 2.32
786 788 9.953565 ATGATGATTGAAATGGAAACTCAATTT 57.046 25.926 0.00 0.00 39.34 1.82
787 789 9.953565 AATGATGATTGAAATGGAAACTCAATT 57.046 25.926 0.00 0.00 39.34 2.32
788 790 9.953565 AAATGATGATTGAAATGGAAACTCAAT 57.046 25.926 0.00 0.00 41.37 2.57
789 791 9.781633 AAAATGATGATTGAAATGGAAACTCAA 57.218 25.926 0.00 0.00 33.82 3.02
811 813 7.551617 ACGAATCGAACCAAGGAATAGTAAAAT 59.448 33.333 10.55 0.00 0.00 1.82
834 836 0.331954 AGGACCCTCTTAGCTGACGA 59.668 55.000 0.00 0.00 0.00 4.20
865 867 9.985730 TCTTTGCTTTTTGATGATTATCTTTGT 57.014 25.926 0.00 0.00 34.31 2.83
954 962 1.191489 TCATTGGTGACCCGAGCAGA 61.191 55.000 0.00 0.00 0.00 4.26
970 978 3.538591 CGGTGCCATGCTATATCATCAT 58.461 45.455 0.00 0.00 0.00 2.45
1005 1013 3.949754 ACTGCCATGTGATTGATAAGGTG 59.050 43.478 0.00 0.00 0.00 4.00
1102 1119 1.663702 CCAGGTCGACGTTGTCCAC 60.664 63.158 19.44 3.44 0.00 4.02
1104 1121 1.372623 GACCAGGTCGACGTTGTCC 60.373 63.158 24.31 10.77 0.00 4.02
1126 1143 3.790437 CCTCTCAGCCGGCATGGT 61.790 66.667 31.54 4.11 41.21 3.55
1131 1148 2.185608 GAAGACCTCTCAGCCGGC 59.814 66.667 21.89 21.89 0.00 6.13
1132 1149 2.492090 CGAAGACCTCTCAGCCGG 59.508 66.667 0.00 0.00 0.00 6.13
1160 1177 1.740285 GCCGATACCAGGACATCGT 59.260 57.895 19.99 0.00 41.88 3.73
1199 1216 4.600576 TGTTCTGCGTGCTGCCGA 62.601 61.111 13.37 0.00 45.60 5.54
1205 1222 2.558313 GGAGCTTGTTCTGCGTGC 59.442 61.111 0.00 0.00 35.28 5.34
1797 1842 1.853319 CGCGAGCTTTCTCACGTTT 59.147 52.632 0.00 0.00 39.34 3.60
1909 1954 1.004918 CCGTCCTGTTCACCTCCAC 60.005 63.158 0.00 0.00 0.00 4.02
2067 2115 3.701664 TCTCTGAGCTCACTGGAATGTA 58.298 45.455 13.74 0.00 0.00 2.29
2126 2269 8.403236 GCTGGTAATAAAGTTACGGAAATGATT 58.597 33.333 0.00 0.00 0.00 2.57
2149 2292 8.984891 TTATGATAAACTGAAACATTTGGCTG 57.015 30.769 0.00 0.00 0.00 4.85
2151 2294 7.545265 TGCTTATGATAAACTGAAACATTTGGC 59.455 33.333 0.00 0.00 0.00 4.52
2263 2461 2.205074 GTATGCTTGTGTATGCGAGCT 58.795 47.619 6.83 0.00 44.20 4.09
2277 2475 1.275291 ACTGTTACTGCGGTGTATGCT 59.725 47.619 8.92 0.00 0.00 3.79
2278 2476 1.722011 ACTGTTACTGCGGTGTATGC 58.278 50.000 8.92 0.00 0.00 3.14
2280 2478 3.129988 GGAGTACTGTTACTGCGGTGTAT 59.870 47.826 8.92 0.00 38.77 2.29
2281 2479 2.489329 GGAGTACTGTTACTGCGGTGTA 59.511 50.000 8.92 0.00 38.77 2.90
2314 2512 3.134127 GTGAGGCCGCCATGAACC 61.134 66.667 13.15 0.00 0.00 3.62
2316 2514 2.046023 CTGTGAGGCCGCCATGAA 60.046 61.111 13.15 0.00 0.00 2.57
2317 2515 4.783621 GCTGTGAGGCCGCCATGA 62.784 66.667 13.15 0.00 0.00 3.07
2515 2713 2.168666 AACGAGGGAAACGAGGAGGC 62.169 60.000 0.00 0.00 34.70 4.70
2532 2730 0.960861 CGGCCAAGGAGAAGGGAAAC 60.961 60.000 2.24 0.00 0.00 2.78
2630 2828 2.675423 CGACCTCCCACGTCCTCA 60.675 66.667 0.00 0.00 0.00 3.86
2685 2883 2.836360 CTCTACGCCCGCCCCTTA 60.836 66.667 0.00 0.00 0.00 2.69
2748 2946 1.040339 AGCTAGCTCTCCCGTTCCAG 61.040 60.000 12.68 0.00 0.00 3.86
2784 2982 1.143305 CAAGACCTCAACTGCAGTCG 58.857 55.000 21.95 9.74 34.41 4.18
2793 2991 1.066858 GTGCGATCCTCAAGACCTCAA 60.067 52.381 0.00 0.00 0.00 3.02
2794 2992 0.532573 GTGCGATCCTCAAGACCTCA 59.467 55.000 0.00 0.00 0.00 3.86
2795 2993 0.526524 CGTGCGATCCTCAAGACCTC 60.527 60.000 0.00 0.00 0.00 3.85
2796 2994 1.513158 CGTGCGATCCTCAAGACCT 59.487 57.895 0.00 0.00 0.00 3.85
2797 2995 1.519455 CCGTGCGATCCTCAAGACC 60.519 63.158 0.00 0.00 0.00 3.85
2798 2996 0.389948 AACCGTGCGATCCTCAAGAC 60.390 55.000 0.00 0.00 0.00 3.01
2799 2997 0.389817 CAACCGTGCGATCCTCAAGA 60.390 55.000 0.00 0.00 0.00 3.02
2800 2998 1.361668 CCAACCGTGCGATCCTCAAG 61.362 60.000 0.00 0.00 0.00 3.02
2851 3049 1.065851 GTTCGTTCGCCTTTTTCCCAA 59.934 47.619 0.00 0.00 0.00 4.12
2867 3066 1.449601 CCCCCATCGTTCCAGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
2887 3086 3.066760 CCGCAAACCCTTCCAGATTTATC 59.933 47.826 0.00 0.00 0.00 1.75
2895 3094 4.572571 ACGCCGCAAACCCTTCCA 62.573 61.111 0.00 0.00 0.00 3.53
2928 3127 2.077627 CTCTCTCCGTGTCTCTCGAAA 58.922 52.381 0.00 0.00 0.00 3.46
2937 3137 1.003112 AGTCGCTCTCTCTCCGTGT 60.003 57.895 0.00 0.00 0.00 4.49
3013 3215 3.584406 CTGTTCCACAGGAGTACAGAG 57.416 52.381 10.86 0.00 40.87 3.35
3049 3251 2.712984 GGCTGAAGATGCCCTAAGC 58.287 57.895 0.00 0.00 44.32 3.09
3055 3257 3.056313 GCCAACGGCTGAAGATGCC 62.056 63.158 0.00 0.00 46.69 4.40
3056 3258 2.486966 GCCAACGGCTGAAGATGC 59.513 61.111 0.00 0.00 46.69 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.