Multiple sequence alignment - TraesCS7B01G108900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G108900 chr7B 100.000 2495 0 0 1 2495 125016419 125013925 0.000000e+00 4608
1 TraesCS7B01G108900 chr7B 81.293 727 108 21 277 992 135019326 135018617 4.660000e-157 564
2 TraesCS7B01G108900 chr7B 81.510 649 102 12 322 964 127653256 127652620 3.680000e-143 518
3 TraesCS7B01G108900 chr7B 96.377 138 5 0 18 155 125057300 125057163 6.940000e-56 228
4 TraesCS7B01G108900 chr7B 84.672 137 11 6 2365 2493 601118422 601118556 7.240000e-26 128
5 TraesCS7B01G108900 chr7D 94.153 1009 39 4 1 995 162984454 162983452 0.000000e+00 1519
6 TraesCS7B01G108900 chr7D 93.788 499 28 3 1058 1555 162983299 162982803 0.000000e+00 747
7 TraesCS7B01G108900 chr7D 81.319 728 115 13 277 998 169540541 169539829 2.780000e-159 571
8 TraesCS7B01G108900 chr7D 81.674 693 108 13 277 964 169024508 169025186 2.170000e-155 558
9 TraesCS7B01G108900 chr7D 81.556 694 107 15 277 964 169440954 169440276 1.010000e-153 553
10 TraesCS7B01G108900 chr7D 81.385 693 110 13 277 964 169422584 169421906 4.690000e-152 547
11 TraesCS7B01G108900 chr7D 82.110 654 101 14 313 964 164752733 164752094 1.690000e-151 545
12 TraesCS7B01G108900 chr7D 81.268 694 109 15 277 964 168990957 168991635 2.180000e-150 542
13 TraesCS7B01G108900 chr7D 81.124 694 110 16 277 964 169499002 169498324 1.020000e-148 536
14 TraesCS7B01G108900 chr7D 80.480 333 31 23 2191 2493 529693707 529693379 8.980000e-55 224
15 TraesCS7B01G108900 chr7D 75.185 540 58 35 2001 2469 634722207 634722741 4.240000e-43 185
16 TraesCS7B01G108900 chr7D 86.765 136 18 0 863 998 169449585 169449450 4.300000e-33 152
17 TraesCS7B01G108900 chr7A 89.360 1015 55 17 1 995 163785223 163784242 0.000000e+00 1227
18 TraesCS7B01G108900 chr7A 81.405 726 112 18 277 995 171548298 171547589 2.780000e-159 571
19 TraesCS7B01G108900 chr7A 81.328 723 112 18 280 995 171876855 171876149 1.300000e-157 566
20 TraesCS7B01G108900 chr7A 88.841 466 27 6 1114 1555 163784051 163783587 1.300000e-152 549
21 TraesCS7B01G108900 chr7A 80.663 724 114 19 247 964 166491560 166490857 2.820000e-149 538
22 TraesCS7B01G108900 chr7A 80.663 724 114 19 247 964 166869280 166869983 2.820000e-149 538
23 TraesCS7B01G108900 chr7A 80.836 694 112 15 277 964 171439448 171438770 2.200000e-145 525
24 TraesCS7B01G108900 chr7A 77.374 495 65 21 2003 2456 191203018 191202530 1.480000e-62 250
25 TraesCS7B01G108900 chrUn 81.466 723 111 18 280 995 342997480 342996774 2.780000e-159 571
26 TraesCS7B01G108900 chrUn 79.135 532 57 32 2003 2493 40578863 40578345 4.000000e-83 318
27 TraesCS7B01G108900 chrUn 77.049 366 54 19 2146 2493 113187216 113187569 1.520000e-42 183
28 TraesCS7B01G108900 chr2B 80.266 527 52 23 2003 2489 569126729 569126215 1.420000e-92 350
29 TraesCS7B01G108900 chr2B 89.506 162 14 3 2003 2161 473766186 473766347 4.210000e-48 202
30 TraesCS7B01G108900 chr2B 84.328 134 13 5 2366 2493 180567936 180568067 9.370000e-25 124
31 TraesCS7B01G108900 chr4B 80.000 530 59 31 2004 2493 630640463 630640985 5.110000e-92 348
32 TraesCS7B01G108900 chr4B 74.268 478 65 38 2057 2493 593434530 593434990 5.560000e-32 148
33 TraesCS7B01G108900 chr3A 81.659 458 42 21 2004 2430 7313422 7313868 2.380000e-90 342
34 TraesCS7B01G108900 chr5D 78.277 534 69 28 1998 2489 481772696 481773224 1.450000e-77 300
35 TraesCS7B01G108900 chr5D 77.530 494 59 27 2002 2448 398759215 398758727 1.480000e-62 250
36 TraesCS7B01G108900 chr5D 87.195 164 15 5 2004 2162 441916478 441916640 5.480000e-42 182
37 TraesCS7B01G108900 chr3B 78.142 549 56 32 2003 2493 82825460 82824918 8.730000e-75 291
38 TraesCS7B01G108900 chr3B 86.957 161 18 3 2004 2162 104590772 104590613 7.090000e-41 178
39 TraesCS7B01G108900 chr2D 80.340 412 41 17 2007 2388 624782537 624782136 2.440000e-70 276
40 TraesCS7B01G108900 chr2D 77.821 514 51 24 2003 2458 484379068 484379576 2.460000e-65 259
41 TraesCS7B01G108900 chr2D 89.262 149 12 4 2003 2149 624211929 624212075 1.520000e-42 183
42 TraesCS7B01G108900 chr2A 77.626 514 64 23 2003 2489 628676930 628677419 5.290000e-67 265
43 TraesCS7B01G108900 chr2A 76.628 522 76 31 2007 2493 40471992 40472502 1.920000e-61 246
44 TraesCS7B01G108900 chr2A 77.545 334 39 13 2151 2448 499293849 499294182 4.270000e-38 169
45 TraesCS7B01G108900 chr3D 89.151 212 15 7 2006 2212 495315661 495315869 8.850000e-65 257
46 TraesCS7B01G108900 chr6D 79.534 386 40 22 2133 2486 78818575 78818953 3.210000e-59 239
47 TraesCS7B01G108900 chr5B 85.000 240 26 6 2003 2232 498812550 498812311 4.150000e-58 235
48 TraesCS7B01G108900 chr6A 83.740 246 24 9 2001 2232 583012193 583012436 4.180000e-53 219
49 TraesCS7B01G108900 chr4A 76.827 479 49 24 2037 2463 732857697 732858165 1.940000e-51 213
50 TraesCS7B01G108900 chr4A 76.716 408 36 27 2137 2493 703165706 703166105 3.300000e-39 172
51 TraesCS7B01G108900 chr5A 81.347 193 23 12 2003 2189 546678935 546679120 7.190000e-31 145
52 TraesCS7B01G108900 chr5A 85.714 112 15 1 2290 2400 672335945 672335834 1.570000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G108900 chr7B 125013925 125016419 2494 True 4608 4608 100.0000 1 2495 1 chr7B.!!$R1 2494
1 TraesCS7B01G108900 chr7B 135018617 135019326 709 True 564 564 81.2930 277 992 1 chr7B.!!$R4 715
2 TraesCS7B01G108900 chr7B 127652620 127653256 636 True 518 518 81.5100 322 964 1 chr7B.!!$R3 642
3 TraesCS7B01G108900 chr7D 162982803 162984454 1651 True 1133 1519 93.9705 1 1555 2 chr7D.!!$R8 1554
4 TraesCS7B01G108900 chr7D 169539829 169540541 712 True 571 571 81.3190 277 998 1 chr7D.!!$R6 721
5 TraesCS7B01G108900 chr7D 169024508 169025186 678 False 558 558 81.6740 277 964 1 chr7D.!!$F2 687
6 TraesCS7B01G108900 chr7D 169440276 169440954 678 True 553 553 81.5560 277 964 1 chr7D.!!$R3 687
7 TraesCS7B01G108900 chr7D 169421906 169422584 678 True 547 547 81.3850 277 964 1 chr7D.!!$R2 687
8 TraesCS7B01G108900 chr7D 164752094 164752733 639 True 545 545 82.1100 313 964 1 chr7D.!!$R1 651
9 TraesCS7B01G108900 chr7D 168990957 168991635 678 False 542 542 81.2680 277 964 1 chr7D.!!$F1 687
10 TraesCS7B01G108900 chr7D 169498324 169499002 678 True 536 536 81.1240 277 964 1 chr7D.!!$R5 687
11 TraesCS7B01G108900 chr7A 163783587 163785223 1636 True 888 1227 89.1005 1 1555 2 chr7A.!!$R6 1554
12 TraesCS7B01G108900 chr7A 171547589 171548298 709 True 571 571 81.4050 277 995 1 chr7A.!!$R3 718
13 TraesCS7B01G108900 chr7A 171876149 171876855 706 True 566 566 81.3280 280 995 1 chr7A.!!$R4 715
14 TraesCS7B01G108900 chr7A 166490857 166491560 703 True 538 538 80.6630 247 964 1 chr7A.!!$R1 717
15 TraesCS7B01G108900 chr7A 166869280 166869983 703 False 538 538 80.6630 247 964 1 chr7A.!!$F1 717
16 TraesCS7B01G108900 chr7A 171438770 171439448 678 True 525 525 80.8360 277 964 1 chr7A.!!$R2 687
17 TraesCS7B01G108900 chrUn 342996774 342997480 706 True 571 571 81.4660 280 995 1 chrUn.!!$R2 715
18 TraesCS7B01G108900 chrUn 40578345 40578863 518 True 318 318 79.1350 2003 2493 1 chrUn.!!$R1 490
19 TraesCS7B01G108900 chr2B 569126215 569126729 514 True 350 350 80.2660 2003 2489 1 chr2B.!!$R1 486
20 TraesCS7B01G108900 chr4B 630640463 630640985 522 False 348 348 80.0000 2004 2493 1 chr4B.!!$F2 489
21 TraesCS7B01G108900 chr5D 481772696 481773224 528 False 300 300 78.2770 1998 2489 1 chr5D.!!$F2 491
22 TraesCS7B01G108900 chr3B 82824918 82825460 542 True 291 291 78.1420 2003 2493 1 chr3B.!!$R1 490
23 TraesCS7B01G108900 chr2D 484379068 484379576 508 False 259 259 77.8210 2003 2458 1 chr2D.!!$F1 455
24 TraesCS7B01G108900 chr2A 40471992 40472502 510 False 246 246 76.6280 2007 2493 1 chr2A.!!$F1 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 139 0.593008 GTTTCAAACGGACCGGCAAC 60.593 55.000 20.0 9.19 0.00 4.17 F
1011 1064 1.002624 TGCGTTCATGGAAGGTCCC 60.003 57.895 0.0 0.00 35.03 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1079 0.108804 TGCAAGAGAATCGGTCGTCC 60.109 55.0 0.0 0.0 42.67 4.79 R
1832 2014 0.371989 CGTGCGAACAACTCACAACA 59.628 50.0 0.0 0.0 34.32 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.968335 TCATCAATCAAACGAATAATGCACAG 59.032 34.615 0.00 0.00 0.00 3.66
124 139 0.593008 GTTTCAAACGGACCGGCAAC 60.593 55.000 20.00 9.19 0.00 4.17
176 204 5.187576 AGTGGTTAAATACAACTACGCCCTA 59.812 40.000 0.00 0.00 39.34 3.53
212 240 2.628106 CAATCGCCGCCAATCTCG 59.372 61.111 0.00 0.00 0.00 4.04
215 243 2.298158 AATCGCCGCCAATCTCGTCT 62.298 55.000 0.00 0.00 0.00 4.18
518 556 1.872237 CGACCGCTTCTTCTTCACCAA 60.872 52.381 0.00 0.00 0.00 3.67
868 912 1.546476 CAGAGCACGTAGGAAAGAGGT 59.454 52.381 0.00 0.00 0.00 3.85
921 971 1.152881 GCGCCCCATGAAGAGGATT 60.153 57.895 0.00 0.00 0.00 3.01
1001 1054 3.434319 CTTGCCGGCTGCGTTCAT 61.434 61.111 29.70 0.00 45.60 2.57
1002 1055 3.672255 CTTGCCGGCTGCGTTCATG 62.672 63.158 29.70 3.40 45.60 3.07
1005 1058 2.745884 CCGGCTGCGTTCATGGAA 60.746 61.111 0.00 0.00 0.00 3.53
1006 1059 2.753966 CCGGCTGCGTTCATGGAAG 61.754 63.158 0.00 0.00 0.00 3.46
1007 1060 2.753966 CGGCTGCGTTCATGGAAGG 61.754 63.158 0.00 0.00 0.00 3.46
1008 1061 1.675641 GGCTGCGTTCATGGAAGGT 60.676 57.895 0.00 0.00 31.18 3.50
1009 1062 1.648467 GGCTGCGTTCATGGAAGGTC 61.648 60.000 0.00 0.00 31.18 3.85
1010 1063 1.648467 GCTGCGTTCATGGAAGGTCC 61.648 60.000 0.00 0.00 36.96 4.46
1011 1064 1.002624 TGCGTTCATGGAAGGTCCC 60.003 57.895 0.00 0.00 35.03 4.46
1012 1065 2.106683 GCGTTCATGGAAGGTCCCG 61.107 63.158 0.00 0.00 35.03 5.14
1013 1066 1.449601 CGTTCATGGAAGGTCCCGG 60.450 63.158 0.00 0.00 35.03 5.73
1017 1070 1.825191 CATGGAAGGTCCCGGCATG 60.825 63.158 0.00 0.00 35.03 4.06
1073 1231 1.537202 AGAACTTTTCGGTGATGCTGC 59.463 47.619 0.00 0.00 34.02 5.25
1077 1235 1.129998 CTTTTCGGTGATGCTGCAGAG 59.870 52.381 20.43 0.00 0.00 3.35
1104 1262 2.361104 GGGACTTCCAATGCCGCA 60.361 61.111 0.00 0.00 37.91 5.69
1112 1270 3.204119 CAATGCCGCAGCCGATCA 61.204 61.111 0.00 0.00 38.69 2.92
1162 1320 1.139734 GAAGAGGCGCTCGACATGA 59.860 57.895 7.64 0.00 35.36 3.07
1257 1415 0.967380 CCATGGTCCAAGACAAGCCC 60.967 60.000 2.57 0.00 33.68 5.19
1315 1497 2.475466 AATGCCGCAGCCGATCTTG 61.475 57.895 0.00 0.00 38.69 3.02
1317 1499 3.567797 GCCGCAGCCGATCTTGAC 61.568 66.667 0.00 0.00 36.29 3.18
1332 1514 0.108186 TTGACGCTCCATCGCTTCAT 60.108 50.000 0.00 0.00 37.89 2.57
1354 1536 1.329599 GACACGACCACTTGTTCAACC 59.670 52.381 0.00 0.00 0.00 3.77
1416 1598 1.807573 CGAAGAGGCGCTCCAGAAC 60.808 63.158 7.64 0.00 33.74 3.01
1419 1601 2.493907 AAGAGGCGCTCCAGAACGAC 62.494 60.000 7.64 0.00 37.66 4.34
1425 1607 1.016130 CGCTCCAGAACGACAATGCT 61.016 55.000 0.00 0.00 0.00 3.79
1556 1738 1.609555 GGATACTCAGTCGCTGGTAGG 59.390 57.143 6.95 0.20 31.51 3.18
1557 1739 2.573369 GATACTCAGTCGCTGGTAGGA 58.427 52.381 6.95 0.00 31.51 2.94
1558 1740 2.730934 TACTCAGTCGCTGGTAGGAT 57.269 50.000 6.95 0.00 31.51 3.24
1559 1741 1.107114 ACTCAGTCGCTGGTAGGATG 58.893 55.000 6.95 0.00 31.51 3.51
1560 1742 0.387202 CTCAGTCGCTGGTAGGATGG 59.613 60.000 6.95 0.00 31.51 3.51
1561 1743 1.227380 CAGTCGCTGGTAGGATGGC 60.227 63.158 0.00 0.00 0.00 4.40
1562 1744 2.109181 GTCGCTGGTAGGATGGCC 59.891 66.667 0.00 0.00 0.00 5.36
1563 1745 2.364973 TCGCTGGTAGGATGGCCA 60.365 61.111 8.56 8.56 36.29 5.36
1564 1746 2.203070 CGCTGGTAGGATGGCCAC 60.203 66.667 8.16 1.35 36.29 5.01
1565 1747 2.203070 GCTGGTAGGATGGCCACG 60.203 66.667 8.16 0.00 36.29 4.94
1566 1748 2.505982 CTGGTAGGATGGCCACGG 59.494 66.667 8.16 0.00 36.29 4.94
1567 1749 2.039787 TGGTAGGATGGCCACGGA 59.960 61.111 8.16 0.00 36.29 4.69
1568 1750 1.383943 TGGTAGGATGGCCACGGAT 60.384 57.895 8.16 0.00 36.29 4.18
1569 1751 1.071471 GGTAGGATGGCCACGGATG 59.929 63.158 8.16 0.00 36.29 3.51
1570 1752 1.598130 GTAGGATGGCCACGGATGC 60.598 63.158 8.16 0.00 36.29 3.91
1571 1753 2.069430 TAGGATGGCCACGGATGCA 61.069 57.895 8.16 0.00 36.29 3.96
1572 1754 2.324014 TAGGATGGCCACGGATGCAC 62.324 60.000 8.16 0.00 36.29 4.57
1573 1755 3.211963 GATGGCCACGGATGCACC 61.212 66.667 8.16 0.00 0.00 5.01
1574 1756 3.704231 GATGGCCACGGATGCACCT 62.704 63.158 8.16 0.00 36.31 4.00
1575 1757 3.704231 ATGGCCACGGATGCACCTC 62.704 63.158 8.16 0.00 36.31 3.85
1576 1758 4.101448 GGCCACGGATGCACCTCT 62.101 66.667 0.00 0.00 36.31 3.69
1577 1759 2.821366 GCCACGGATGCACCTCTG 60.821 66.667 0.00 0.00 36.31 3.35
1578 1760 2.981302 CCACGGATGCACCTCTGA 59.019 61.111 3.12 0.00 36.31 3.27
1579 1761 1.153489 CCACGGATGCACCTCTGAG 60.153 63.158 3.12 0.00 36.31 3.35
1580 1762 1.812922 CACGGATGCACCTCTGAGC 60.813 63.158 3.12 0.00 36.31 4.26
1581 1763 2.285773 ACGGATGCACCTCTGAGCA 61.286 57.895 3.12 0.00 45.92 4.26
1582 1764 1.078918 CGGATGCACCTCTGAGCAA 60.079 57.895 0.00 0.00 44.88 3.91
1583 1765 0.463295 CGGATGCACCTCTGAGCAAT 60.463 55.000 0.00 0.00 44.88 3.56
1584 1766 1.760192 GGATGCACCTCTGAGCAATT 58.240 50.000 0.00 0.00 44.88 2.32
1585 1767 2.097825 GGATGCACCTCTGAGCAATTT 58.902 47.619 0.00 0.00 44.88 1.82
1586 1768 2.159282 GGATGCACCTCTGAGCAATTTG 60.159 50.000 0.00 0.00 44.88 2.32
1587 1769 1.250328 TGCACCTCTGAGCAATTTGG 58.750 50.000 0.00 0.00 37.90 3.28
1588 1770 1.251251 GCACCTCTGAGCAATTTGGT 58.749 50.000 0.00 0.00 0.00 3.67
1589 1771 1.200948 GCACCTCTGAGCAATTTGGTC 59.799 52.381 19.20 19.20 44.54 4.02
1590 1772 1.815003 CACCTCTGAGCAATTTGGTCC 59.185 52.381 22.14 8.17 43.72 4.46
1591 1773 1.425066 ACCTCTGAGCAATTTGGTCCA 59.575 47.619 22.14 10.54 43.72 4.02
1592 1774 1.815003 CCTCTGAGCAATTTGGTCCAC 59.185 52.381 22.14 3.00 43.72 4.02
1593 1775 2.553904 CCTCTGAGCAATTTGGTCCACT 60.554 50.000 22.14 0.16 43.72 4.00
1594 1776 3.152341 CTCTGAGCAATTTGGTCCACTT 58.848 45.455 22.14 0.00 43.72 3.16
1595 1777 3.565307 TCTGAGCAATTTGGTCCACTTT 58.435 40.909 22.14 0.00 43.72 2.66
1596 1778 3.318839 TCTGAGCAATTTGGTCCACTTTG 59.681 43.478 22.14 8.13 43.72 2.77
1597 1779 3.030291 TGAGCAATTTGGTCCACTTTGT 58.970 40.909 22.14 2.90 43.72 2.83
1598 1780 3.450457 TGAGCAATTTGGTCCACTTTGTT 59.550 39.130 22.14 7.98 43.72 2.83
1599 1781 4.051237 GAGCAATTTGGTCCACTTTGTTC 58.949 43.478 16.01 11.63 38.84 3.18
1600 1782 3.450457 AGCAATTTGGTCCACTTTGTTCA 59.550 39.130 12.41 0.00 0.00 3.18
1601 1783 4.081198 AGCAATTTGGTCCACTTTGTTCAA 60.081 37.500 12.41 0.00 0.00 2.69
1602 1784 4.270808 GCAATTTGGTCCACTTTGTTCAAG 59.729 41.667 12.41 0.00 38.64 3.02
1603 1785 3.518634 TTTGGTCCACTTTGTTCAAGC 57.481 42.857 0.00 0.00 35.65 4.01
1604 1786 2.136298 TGGTCCACTTTGTTCAAGCA 57.864 45.000 0.00 0.00 35.65 3.91
1605 1787 2.451490 TGGTCCACTTTGTTCAAGCAA 58.549 42.857 0.00 0.00 35.65 3.91
1606 1788 2.828520 TGGTCCACTTTGTTCAAGCAAA 59.171 40.909 0.00 0.00 35.65 3.68
1607 1789 3.186909 GGTCCACTTTGTTCAAGCAAAC 58.813 45.455 0.00 0.00 35.65 2.93
1608 1790 3.119137 GGTCCACTTTGTTCAAGCAAACT 60.119 43.478 0.00 0.00 35.65 2.66
1609 1791 4.097286 GGTCCACTTTGTTCAAGCAAACTA 59.903 41.667 0.00 0.00 35.65 2.24
1610 1792 5.393678 GGTCCACTTTGTTCAAGCAAACTAA 60.394 40.000 0.00 0.00 35.65 2.24
1611 1793 6.096695 GTCCACTTTGTTCAAGCAAACTAAA 58.903 36.000 0.00 0.00 35.65 1.85
1612 1794 6.588373 GTCCACTTTGTTCAAGCAAACTAAAA 59.412 34.615 0.00 0.00 35.65 1.52
1613 1795 6.588373 TCCACTTTGTTCAAGCAAACTAAAAC 59.412 34.615 0.00 0.00 35.65 2.43
1614 1796 6.367422 CCACTTTGTTCAAGCAAACTAAAACA 59.633 34.615 0.00 0.00 35.65 2.83
1615 1797 7.411804 CCACTTTGTTCAAGCAAACTAAAACAG 60.412 37.037 0.00 0.00 35.65 3.16
1616 1798 7.116233 CACTTTGTTCAAGCAAACTAAAACAGT 59.884 33.333 0.00 0.00 35.83 3.55
1617 1799 7.655732 ACTTTGTTCAAGCAAACTAAAACAGTT 59.344 29.630 0.00 0.00 41.86 3.16
1630 1812 8.628882 AACTAAAACAGTTGTTATTCTTGCAC 57.371 30.769 0.00 0.00 46.01 4.57
1631 1813 7.996385 ACTAAAACAGTTGTTATTCTTGCACT 58.004 30.769 0.00 0.00 37.25 4.40
1632 1814 8.466798 ACTAAAACAGTTGTTATTCTTGCACTT 58.533 29.630 0.00 0.00 37.25 3.16
1633 1815 7.524294 AAAACAGTTGTTATTCTTGCACTTG 57.476 32.000 0.00 0.00 37.25 3.16
1634 1816 5.835113 ACAGTTGTTATTCTTGCACTTGT 57.165 34.783 0.00 0.00 0.00 3.16
1635 1817 6.207691 ACAGTTGTTATTCTTGCACTTGTT 57.792 33.333 0.00 0.00 0.00 2.83
1636 1818 7.328277 ACAGTTGTTATTCTTGCACTTGTTA 57.672 32.000 0.00 0.00 0.00 2.41
1637 1819 7.940850 ACAGTTGTTATTCTTGCACTTGTTAT 58.059 30.769 0.00 0.00 0.00 1.89
1638 1820 8.076178 ACAGTTGTTATTCTTGCACTTGTTATC 58.924 33.333 0.00 0.00 0.00 1.75
1639 1821 7.269084 CAGTTGTTATTCTTGCACTTGTTATCG 59.731 37.037 0.00 0.00 0.00 2.92
1640 1822 7.172532 AGTTGTTATTCTTGCACTTGTTATCGA 59.827 33.333 0.00 0.00 0.00 3.59
1641 1823 7.609760 TGTTATTCTTGCACTTGTTATCGAT 57.390 32.000 2.16 2.16 0.00 3.59
1642 1824 7.463544 TGTTATTCTTGCACTTGTTATCGATG 58.536 34.615 8.54 0.00 0.00 3.84
1643 1825 7.119116 TGTTATTCTTGCACTTGTTATCGATGT 59.881 33.333 8.54 0.00 0.00 3.06
1644 1826 5.940192 TTCTTGCACTTGTTATCGATGTT 57.060 34.783 8.54 0.00 0.00 2.71
1645 1827 5.530519 TCTTGCACTTGTTATCGATGTTC 57.469 39.130 8.54 0.00 0.00 3.18
1646 1828 5.237815 TCTTGCACTTGTTATCGATGTTCT 58.762 37.500 8.54 0.00 0.00 3.01
1647 1829 4.926860 TGCACTTGTTATCGATGTTCTG 57.073 40.909 8.54 0.00 0.00 3.02
1648 1830 4.565022 TGCACTTGTTATCGATGTTCTGA 58.435 39.130 8.54 0.00 0.00 3.27
1649 1831 4.994217 TGCACTTGTTATCGATGTTCTGAA 59.006 37.500 8.54 0.00 0.00 3.02
1650 1832 5.107104 TGCACTTGTTATCGATGTTCTGAAC 60.107 40.000 13.49 13.49 0.00 3.18
1651 1833 5.107104 GCACTTGTTATCGATGTTCTGAACA 60.107 40.000 23.94 23.94 46.94 3.18
1662 1844 4.717233 TGTTCTGAACATTGTGTTTGCT 57.283 36.364 18.69 0.00 41.28 3.91
1663 1845 4.422840 TGTTCTGAACATTGTGTTTGCTG 58.577 39.130 18.69 0.00 41.28 4.41
1664 1846 4.082300 TGTTCTGAACATTGTGTTTGCTGT 60.082 37.500 18.69 0.00 41.28 4.40
1665 1847 4.717233 TCTGAACATTGTGTTTGCTGTT 57.283 36.364 0.00 0.00 41.28 3.16
1666 1848 5.070770 TCTGAACATTGTGTTTGCTGTTT 57.929 34.783 0.00 0.00 41.28 2.83
1667 1849 5.477510 TCTGAACATTGTGTTTGCTGTTTT 58.522 33.333 0.00 0.00 41.28 2.43
1668 1850 5.931146 TCTGAACATTGTGTTTGCTGTTTTT 59.069 32.000 0.00 0.00 41.28 1.94
1698 1880 7.100829 TGTACGCTGCAACTTATATATTTCG 57.899 36.000 0.00 0.00 0.00 3.46
1699 1881 5.018695 ACGCTGCAACTTATATATTTCGC 57.981 39.130 0.00 0.00 0.00 4.70
1700 1882 4.509970 ACGCTGCAACTTATATATTTCGCA 59.490 37.500 0.00 0.00 0.00 5.10
1701 1883 5.075448 CGCTGCAACTTATATATTTCGCAG 58.925 41.667 15.26 15.26 46.41 5.18
1702 1884 5.333339 CGCTGCAACTTATATATTTCGCAGT 60.333 40.000 18.36 2.84 45.64 4.40
1703 1885 6.074005 GCTGCAACTTATATATTTCGCAGTC 58.926 40.000 18.36 11.41 45.64 3.51
1704 1886 6.073548 GCTGCAACTTATATATTTCGCAGTCT 60.074 38.462 18.36 0.00 45.64 3.24
1705 1887 7.177498 TGCAACTTATATATTTCGCAGTCTG 57.823 36.000 0.00 0.00 0.00 3.51
1706 1888 6.983890 TGCAACTTATATATTTCGCAGTCTGA 59.016 34.615 3.32 0.00 0.00 3.27
1707 1889 7.042725 TGCAACTTATATATTTCGCAGTCTGAC 60.043 37.037 3.32 0.00 0.00 3.51
1708 1890 7.169982 GCAACTTATATATTTCGCAGTCTGACT 59.830 37.037 4.06 4.06 0.00 3.41
1709 1891 8.695284 CAACTTATATATTTCGCAGTCTGACTC 58.305 37.037 7.49 2.53 0.00 3.36
1710 1892 7.941919 ACTTATATATTTCGCAGTCTGACTCA 58.058 34.615 7.49 0.00 0.00 3.41
1711 1893 8.079203 ACTTATATATTTCGCAGTCTGACTCAG 58.921 37.037 7.49 5.08 0.00 3.35
1712 1894 4.727507 ATATTTCGCAGTCTGACTCAGT 57.272 40.909 7.49 0.00 32.61 3.41
1713 1895 2.890808 TTTCGCAGTCTGACTCAGTT 57.109 45.000 7.49 0.00 32.61 3.16
1714 1896 2.423926 TTCGCAGTCTGACTCAGTTC 57.576 50.000 7.49 1.73 32.61 3.01
1715 1897 0.598562 TCGCAGTCTGACTCAGTTCC 59.401 55.000 7.49 0.00 32.61 3.62
1716 1898 0.315251 CGCAGTCTGACTCAGTTCCA 59.685 55.000 7.49 0.00 32.61 3.53
1717 1899 1.269778 CGCAGTCTGACTCAGTTCCAA 60.270 52.381 7.49 0.00 32.61 3.53
1718 1900 2.803133 CGCAGTCTGACTCAGTTCCAAA 60.803 50.000 7.49 0.00 32.61 3.28
1719 1901 2.545946 GCAGTCTGACTCAGTTCCAAAC 59.454 50.000 7.49 0.00 32.61 2.93
1720 1902 3.742640 GCAGTCTGACTCAGTTCCAAACT 60.743 47.826 7.49 0.00 44.06 2.66
1721 1903 4.446371 CAGTCTGACTCAGTTCCAAACTT 58.554 43.478 7.49 0.00 40.46 2.66
1722 1904 4.878397 CAGTCTGACTCAGTTCCAAACTTT 59.122 41.667 7.49 0.00 40.46 2.66
1723 1905 5.355350 CAGTCTGACTCAGTTCCAAACTTTT 59.645 40.000 7.49 0.00 40.46 2.27
1724 1906 5.946377 AGTCTGACTCAGTTCCAAACTTTTT 59.054 36.000 4.06 0.00 40.46 1.94
1725 1907 7.065803 CAGTCTGACTCAGTTCCAAACTTTTTA 59.934 37.037 7.49 0.00 40.46 1.52
1726 1908 7.281100 AGTCTGACTCAGTTCCAAACTTTTTAG 59.719 37.037 4.06 0.00 40.46 1.85
1727 1909 7.065923 GTCTGACTCAGTTCCAAACTTTTTAGT 59.934 37.037 5.94 0.00 40.46 2.24
1728 1910 7.280205 TCTGACTCAGTTCCAAACTTTTTAGTC 59.720 37.037 5.94 0.00 40.46 2.59
1729 1911 6.882140 TGACTCAGTTCCAAACTTTTTAGTCA 59.118 34.615 14.09 14.09 40.46 3.41
1730 1912 7.065803 TGACTCAGTTCCAAACTTTTTAGTCAG 59.934 37.037 14.09 0.00 40.46 3.51
1731 1913 7.110155 ACTCAGTTCCAAACTTTTTAGTCAGA 58.890 34.615 0.00 0.00 40.46 3.27
1732 1914 7.610305 ACTCAGTTCCAAACTTTTTAGTCAGAA 59.390 33.333 0.00 0.00 40.46 3.02
1733 1915 7.758495 TCAGTTCCAAACTTTTTAGTCAGAAC 58.242 34.615 0.00 0.00 40.46 3.01
1734 1916 7.610305 TCAGTTCCAAACTTTTTAGTCAGAACT 59.390 33.333 0.00 0.00 40.46 3.01
1735 1917 8.244113 CAGTTCCAAACTTTTTAGTCAGAACTT 58.756 33.333 11.59 1.56 40.46 2.66
1736 1918 8.244113 AGTTCCAAACTTTTTAGTCAGAACTTG 58.756 33.333 0.00 0.00 39.04 3.16
1737 1919 7.696992 TCCAAACTTTTTAGTCAGAACTTGT 57.303 32.000 0.00 0.00 36.92 3.16
1738 1920 8.117813 TCCAAACTTTTTAGTCAGAACTTGTT 57.882 30.769 0.00 0.00 36.92 2.83
1739 1921 8.241367 TCCAAACTTTTTAGTCAGAACTTGTTC 58.759 33.333 5.44 5.44 36.92 3.18
1740 1922 8.026607 CCAAACTTTTTAGTCAGAACTTGTTCA 58.973 33.333 14.80 0.00 36.92 3.18
1741 1923 9.405587 CAAACTTTTTAGTCAGAACTTGTTCAA 57.594 29.630 14.80 1.27 36.92 2.69
1743 1925 9.573133 AACTTTTTAGTCAGAACTTGTTCAATG 57.427 29.630 14.80 6.39 36.92 2.82
1744 1926 8.739972 ACTTTTTAGTCAGAACTTGTTCAATGT 58.260 29.630 14.80 5.24 36.92 2.71
1745 1927 9.573133 CTTTTTAGTCAGAACTTGTTCAATGTT 57.427 29.630 14.80 0.00 36.92 2.71
1746 1928 8.909708 TTTTAGTCAGAACTTGTTCAATGTTG 57.090 30.769 14.80 5.15 36.92 3.33
1747 1929 7.857734 TTAGTCAGAACTTGTTCAATGTTGA 57.142 32.000 14.80 7.15 36.92 3.18
1748 1930 6.949352 AGTCAGAACTTGTTCAATGTTGAT 57.051 33.333 14.80 0.12 32.01 2.57
1749 1931 7.338800 AGTCAGAACTTGTTCAATGTTGATT 57.661 32.000 14.80 4.64 32.01 2.57
1750 1932 7.775120 AGTCAGAACTTGTTCAATGTTGATTT 58.225 30.769 14.80 1.86 32.01 2.17
1751 1933 7.703621 AGTCAGAACTTGTTCAATGTTGATTTG 59.296 33.333 14.80 2.10 32.01 2.32
1752 1934 7.489113 GTCAGAACTTGTTCAATGTTGATTTGT 59.511 33.333 14.80 0.00 37.00 2.83
1753 1935 8.681806 TCAGAACTTGTTCAATGTTGATTTGTA 58.318 29.630 14.80 0.00 37.00 2.41
1754 1936 8.745837 CAGAACTTGTTCAATGTTGATTTGTAC 58.254 33.333 14.80 0.00 37.00 2.90
1755 1937 8.686334 AGAACTTGTTCAATGTTGATTTGTACT 58.314 29.630 14.80 0.00 37.00 2.73
1756 1938 9.944663 GAACTTGTTCAATGTTGATTTGTACTA 57.055 29.630 8.45 0.00 37.00 1.82
1758 1940 9.950680 ACTTGTTCAATGTTGATTTGTACTAAG 57.049 29.630 0.00 0.00 37.00 2.18
1765 1947 9.669353 CAATGTTGATTTGTACTAAGATATGGC 57.331 33.333 0.00 0.00 0.00 4.40
1766 1948 8.978874 ATGTTGATTTGTACTAAGATATGGCA 57.021 30.769 0.00 0.00 0.00 4.92
1767 1949 8.437360 TGTTGATTTGTACTAAGATATGGCAG 57.563 34.615 0.00 0.00 0.00 4.85
1768 1950 8.046708 TGTTGATTTGTACTAAGATATGGCAGT 58.953 33.333 0.00 0.00 0.00 4.40
1769 1951 8.338259 GTTGATTTGTACTAAGATATGGCAGTG 58.662 37.037 0.00 0.00 0.00 3.66
1770 1952 7.791029 TGATTTGTACTAAGATATGGCAGTGA 58.209 34.615 0.00 0.00 0.00 3.41
1771 1953 7.710907 TGATTTGTACTAAGATATGGCAGTGAC 59.289 37.037 0.00 0.00 0.00 3.67
1772 1954 6.791867 TTGTACTAAGATATGGCAGTGACT 57.208 37.500 0.00 0.00 0.00 3.41
1773 1955 6.791867 TGTACTAAGATATGGCAGTGACTT 57.208 37.500 0.00 0.00 0.00 3.01
1774 1956 7.182817 TGTACTAAGATATGGCAGTGACTTT 57.817 36.000 0.00 0.00 0.00 2.66
1775 1957 7.265673 TGTACTAAGATATGGCAGTGACTTTC 58.734 38.462 0.00 0.00 0.00 2.62
1776 1958 6.552445 ACTAAGATATGGCAGTGACTTTCT 57.448 37.500 0.00 0.00 0.00 2.52
1777 1959 7.661536 ACTAAGATATGGCAGTGACTTTCTA 57.338 36.000 0.00 0.00 0.00 2.10
1778 1960 8.256356 ACTAAGATATGGCAGTGACTTTCTAT 57.744 34.615 0.00 0.00 0.00 1.98
1779 1961 8.147058 ACTAAGATATGGCAGTGACTTTCTATG 58.853 37.037 0.00 0.00 0.00 2.23
1780 1962 5.862845 AGATATGGCAGTGACTTTCTATGG 58.137 41.667 0.00 0.00 0.00 2.74
1781 1963 2.787473 TGGCAGTGACTTTCTATGGG 57.213 50.000 0.00 0.00 0.00 4.00
1782 1964 2.265367 TGGCAGTGACTTTCTATGGGA 58.735 47.619 0.00 0.00 0.00 4.37
1783 1965 2.846206 TGGCAGTGACTTTCTATGGGAT 59.154 45.455 0.00 0.00 0.00 3.85
1784 1966 3.266772 TGGCAGTGACTTTCTATGGGATT 59.733 43.478 0.00 0.00 0.00 3.01
1785 1967 3.879892 GGCAGTGACTTTCTATGGGATTC 59.120 47.826 0.00 0.00 0.00 2.52
1786 1968 4.384647 GGCAGTGACTTTCTATGGGATTCT 60.385 45.833 0.00 0.00 0.00 2.40
1787 1969 4.574013 GCAGTGACTTTCTATGGGATTCTG 59.426 45.833 0.00 0.00 0.00 3.02
1788 1970 5.627735 GCAGTGACTTTCTATGGGATTCTGA 60.628 44.000 0.00 0.00 0.00 3.27
1789 1971 6.047870 CAGTGACTTTCTATGGGATTCTGAG 58.952 44.000 0.00 0.00 0.00 3.35
1790 1972 4.813697 GTGACTTTCTATGGGATTCTGAGC 59.186 45.833 0.00 0.00 0.00 4.26
1791 1973 4.718774 TGACTTTCTATGGGATTCTGAGCT 59.281 41.667 0.00 0.00 0.00 4.09
1792 1974 5.190528 TGACTTTCTATGGGATTCTGAGCTT 59.809 40.000 0.00 0.00 0.00 3.74
1793 1975 5.435291 ACTTTCTATGGGATTCTGAGCTTG 58.565 41.667 0.00 0.00 0.00 4.01
1794 1976 5.045286 ACTTTCTATGGGATTCTGAGCTTGT 60.045 40.000 0.00 0.00 0.00 3.16
1795 1977 4.412796 TCTATGGGATTCTGAGCTTGTG 57.587 45.455 0.00 0.00 0.00 3.33
1796 1978 4.033009 TCTATGGGATTCTGAGCTTGTGA 58.967 43.478 0.00 0.00 0.00 3.58
1797 1979 3.947612 ATGGGATTCTGAGCTTGTGAT 57.052 42.857 0.00 0.00 0.00 3.06
1798 1980 3.272574 TGGGATTCTGAGCTTGTGATC 57.727 47.619 0.00 0.00 0.00 2.92
1799 1981 2.092753 TGGGATTCTGAGCTTGTGATCC 60.093 50.000 10.14 10.14 0.00 3.36
1800 1982 2.172293 GGGATTCTGAGCTTGTGATCCT 59.828 50.000 15.38 0.00 0.00 3.24
1801 1983 3.371380 GGGATTCTGAGCTTGTGATCCTT 60.371 47.826 15.38 0.00 0.00 3.36
1802 1984 4.268359 GGATTCTGAGCTTGTGATCCTTT 58.732 43.478 10.95 0.00 0.00 3.11
1803 1985 4.704057 GGATTCTGAGCTTGTGATCCTTTT 59.296 41.667 10.95 0.00 0.00 2.27
1804 1986 5.882557 GGATTCTGAGCTTGTGATCCTTTTA 59.117 40.000 10.95 0.00 0.00 1.52
1805 1987 6.038050 GGATTCTGAGCTTGTGATCCTTTTAG 59.962 42.308 10.95 0.00 0.00 1.85
1806 1988 4.836825 TCTGAGCTTGTGATCCTTTTAGG 58.163 43.478 0.00 0.00 36.46 2.69
1807 1989 3.347216 TGAGCTTGTGATCCTTTTAGGC 58.653 45.455 0.00 0.00 34.61 3.93
1808 1990 3.244875 TGAGCTTGTGATCCTTTTAGGCA 60.245 43.478 0.00 0.00 34.61 4.75
1809 1991 3.950395 GAGCTTGTGATCCTTTTAGGCAT 59.050 43.478 0.00 0.00 34.61 4.40
1810 1992 3.698040 AGCTTGTGATCCTTTTAGGCATG 59.302 43.478 0.00 0.00 34.61 4.06
1811 1993 3.445096 GCTTGTGATCCTTTTAGGCATGT 59.555 43.478 0.00 0.00 34.61 3.21
1812 1994 4.640201 GCTTGTGATCCTTTTAGGCATGTA 59.360 41.667 0.00 0.00 34.61 2.29
1813 1995 5.449177 GCTTGTGATCCTTTTAGGCATGTAC 60.449 44.000 0.00 0.00 34.61 2.90
1814 1996 5.435686 TGTGATCCTTTTAGGCATGTACT 57.564 39.130 0.00 0.00 34.61 2.73
1815 1997 6.553953 TGTGATCCTTTTAGGCATGTACTA 57.446 37.500 0.00 0.00 34.61 1.82
1816 1998 7.136822 TGTGATCCTTTTAGGCATGTACTAT 57.863 36.000 0.00 0.00 34.61 2.12
1817 1999 7.217200 TGTGATCCTTTTAGGCATGTACTATC 58.783 38.462 0.00 0.00 34.61 2.08
1818 2000 7.071196 TGTGATCCTTTTAGGCATGTACTATCT 59.929 37.037 0.00 0.00 34.61 1.98
1819 2001 7.934120 GTGATCCTTTTAGGCATGTACTATCTT 59.066 37.037 0.00 0.00 34.61 2.40
1820 2002 7.933577 TGATCCTTTTAGGCATGTACTATCTTG 59.066 37.037 0.00 0.00 34.61 3.02
1821 2003 6.055588 TCCTTTTAGGCATGTACTATCTTGC 58.944 40.000 0.00 0.00 34.61 4.01
1822 2004 5.050091 CCTTTTAGGCATGTACTATCTTGCG 60.050 44.000 0.00 0.00 38.70 4.85
1823 2005 4.665833 TTAGGCATGTACTATCTTGCGT 57.334 40.909 0.00 0.00 38.70 5.24
1824 2006 3.099267 AGGCATGTACTATCTTGCGTC 57.901 47.619 0.00 0.00 38.70 5.19
1825 2007 2.135933 GGCATGTACTATCTTGCGTCC 58.864 52.381 0.00 0.00 38.70 4.79
1826 2008 2.135933 GCATGTACTATCTTGCGTCCC 58.864 52.381 0.00 0.00 0.00 4.46
1827 2009 2.224066 GCATGTACTATCTTGCGTCCCT 60.224 50.000 0.00 0.00 0.00 4.20
1828 2010 3.005472 GCATGTACTATCTTGCGTCCCTA 59.995 47.826 0.00 0.00 0.00 3.53
1829 2011 4.322049 GCATGTACTATCTTGCGTCCCTAT 60.322 45.833 0.00 0.00 0.00 2.57
1830 2012 4.848562 TGTACTATCTTGCGTCCCTATG 57.151 45.455 0.00 0.00 0.00 2.23
1831 2013 4.466827 TGTACTATCTTGCGTCCCTATGA 58.533 43.478 0.00 0.00 0.00 2.15
1832 2014 5.077564 TGTACTATCTTGCGTCCCTATGAT 58.922 41.667 0.00 0.00 0.00 2.45
1833 2015 4.527509 ACTATCTTGCGTCCCTATGATG 57.472 45.455 0.00 0.00 0.00 3.07
1834 2016 3.898123 ACTATCTTGCGTCCCTATGATGT 59.102 43.478 0.00 0.00 32.20 3.06
1835 2017 3.845781 ATCTTGCGTCCCTATGATGTT 57.154 42.857 0.00 0.00 32.20 2.71
1836 2018 2.905075 TCTTGCGTCCCTATGATGTTG 58.095 47.619 0.00 0.00 32.20 3.33
1837 2019 2.236146 TCTTGCGTCCCTATGATGTTGT 59.764 45.455 0.00 0.00 32.20 3.32
1838 2020 2.022764 TGCGTCCCTATGATGTTGTG 57.977 50.000 0.00 0.00 32.20 3.33
1839 2021 1.552792 TGCGTCCCTATGATGTTGTGA 59.447 47.619 0.00 0.00 32.20 3.58
1840 2022 2.205074 GCGTCCCTATGATGTTGTGAG 58.795 52.381 0.00 0.00 32.20 3.51
1841 2023 2.418746 GCGTCCCTATGATGTTGTGAGT 60.419 50.000 0.00 0.00 32.20 3.41
1842 2024 3.861840 CGTCCCTATGATGTTGTGAGTT 58.138 45.455 0.00 0.00 0.00 3.01
1843 2025 3.618594 CGTCCCTATGATGTTGTGAGTTG 59.381 47.826 0.00 0.00 0.00 3.16
1844 2026 4.579869 GTCCCTATGATGTTGTGAGTTGT 58.420 43.478 0.00 0.00 0.00 3.32
1845 2027 5.003804 GTCCCTATGATGTTGTGAGTTGTT 58.996 41.667 0.00 0.00 0.00 2.83
1846 2028 5.122396 GTCCCTATGATGTTGTGAGTTGTTC 59.878 44.000 0.00 0.00 0.00 3.18
1847 2029 4.093408 CCCTATGATGTTGTGAGTTGTTCG 59.907 45.833 0.00 0.00 0.00 3.95
1848 2030 3.542712 ATGATGTTGTGAGTTGTTCGC 57.457 42.857 0.00 0.00 36.83 4.70
1849 2031 2.284190 TGATGTTGTGAGTTGTTCGCA 58.716 42.857 0.00 0.00 44.27 5.10
1850 2032 2.031560 TGATGTTGTGAGTTGTTCGCAC 59.968 45.455 0.00 0.00 45.53 5.34
1853 2035 3.010767 GTGAGTTGTTCGCACGCA 58.989 55.556 0.00 0.00 37.15 5.24
1854 2036 1.367665 GTGAGTTGTTCGCACGCAC 60.368 57.895 0.00 0.00 37.15 5.34
1855 2037 2.128128 GAGTTGTTCGCACGCACG 60.128 61.111 0.00 0.00 0.00 5.34
1856 2038 2.867091 GAGTTGTTCGCACGCACGT 61.867 57.895 0.00 0.00 0.00 4.49
1857 2039 2.022207 GTTGTTCGCACGCACGTT 59.978 55.556 0.00 0.00 0.00 3.99
1858 2040 1.581657 GTTGTTCGCACGCACGTTT 60.582 52.632 0.00 0.00 0.00 3.60
1859 2041 1.581402 TTGTTCGCACGCACGTTTG 60.581 52.632 0.00 0.00 0.00 2.93
1860 2042 2.720750 GTTCGCACGCACGTTTGG 60.721 61.111 0.00 0.00 0.00 3.28
1861 2043 3.196394 TTCGCACGCACGTTTGGT 61.196 55.556 0.00 0.00 0.00 3.67
1862 2044 2.751913 TTCGCACGCACGTTTGGTT 61.752 52.632 0.00 0.00 0.00 3.67
1863 2045 2.634702 TTCGCACGCACGTTTGGTTC 62.635 55.000 0.00 0.00 0.00 3.62
1864 2046 2.713154 GCACGCACGTTTGGTTCT 59.287 55.556 0.00 0.00 0.00 3.01
1865 2047 1.823260 CGCACGCACGTTTGGTTCTA 61.823 55.000 0.00 0.00 0.00 2.10
1866 2048 0.515564 GCACGCACGTTTGGTTCTAT 59.484 50.000 0.00 0.00 0.00 1.98
1867 2049 1.724654 GCACGCACGTTTGGTTCTATG 60.725 52.381 0.00 0.00 0.00 2.23
1868 2050 1.795872 CACGCACGTTTGGTTCTATGA 59.204 47.619 0.00 0.00 0.00 2.15
1869 2051 2.222213 CACGCACGTTTGGTTCTATGAA 59.778 45.455 0.00 0.00 0.00 2.57
1870 2052 3.071479 ACGCACGTTTGGTTCTATGAAT 58.929 40.909 0.00 0.00 0.00 2.57
1871 2053 3.124636 ACGCACGTTTGGTTCTATGAATC 59.875 43.478 0.00 0.00 0.00 2.52
1872 2054 3.124466 CGCACGTTTGGTTCTATGAATCA 59.876 43.478 0.00 0.00 0.00 2.57
1873 2055 4.377943 CGCACGTTTGGTTCTATGAATCAA 60.378 41.667 2.30 2.30 0.00 2.57
1874 2056 5.088739 GCACGTTTGGTTCTATGAATCAAG 58.911 41.667 6.18 0.24 0.00 3.02
1875 2057 5.334879 GCACGTTTGGTTCTATGAATCAAGT 60.335 40.000 6.18 0.76 0.00 3.16
1876 2058 6.307155 CACGTTTGGTTCTATGAATCAAGTC 58.693 40.000 6.18 4.25 0.00 3.01
1877 2059 6.147821 CACGTTTGGTTCTATGAATCAAGTCT 59.852 38.462 6.18 0.00 0.00 3.24
1878 2060 6.147821 ACGTTTGGTTCTATGAATCAAGTCTG 59.852 38.462 6.18 2.13 0.00 3.51
1879 2061 6.368791 CGTTTGGTTCTATGAATCAAGTCTGA 59.631 38.462 6.18 0.00 35.56 3.27
1880 2062 7.095229 CGTTTGGTTCTATGAATCAAGTCTGAA 60.095 37.037 6.18 0.00 34.49 3.02
1881 2063 7.912056 TTGGTTCTATGAATCAAGTCTGAAG 57.088 36.000 2.30 0.00 34.49 3.02
1882 2064 5.877012 TGGTTCTATGAATCAAGTCTGAAGC 59.123 40.000 0.00 0.00 34.49 3.86
1883 2065 5.877012 GGTTCTATGAATCAAGTCTGAAGCA 59.123 40.000 0.00 0.00 34.49 3.91
1884 2066 6.036953 GGTTCTATGAATCAAGTCTGAAGCAG 59.963 42.308 0.00 0.00 34.49 4.24
1885 2067 6.291648 TCTATGAATCAAGTCTGAAGCAGT 57.708 37.500 0.00 0.00 34.49 4.40
1886 2068 6.705302 TCTATGAATCAAGTCTGAAGCAGTT 58.295 36.000 0.00 0.00 34.49 3.16
1887 2069 7.164122 TCTATGAATCAAGTCTGAAGCAGTTT 58.836 34.615 0.00 0.00 34.49 2.66
1888 2070 5.428496 TGAATCAAGTCTGAAGCAGTTTG 57.572 39.130 0.00 0.00 34.49 2.93
1889 2071 4.276678 TGAATCAAGTCTGAAGCAGTTTGG 59.723 41.667 0.00 0.00 34.49 3.28
1890 2072 3.281727 TCAAGTCTGAAGCAGTTTGGT 57.718 42.857 0.00 0.00 32.55 3.67
1891 2073 2.945008 TCAAGTCTGAAGCAGTTTGGTG 59.055 45.455 0.00 0.00 32.55 4.17
1892 2074 2.945008 CAAGTCTGAAGCAGTTTGGTGA 59.055 45.455 0.00 0.00 32.61 4.02
1893 2075 2.843701 AGTCTGAAGCAGTTTGGTGAG 58.156 47.619 0.00 0.00 32.61 3.51
1894 2076 1.876156 GTCTGAAGCAGTTTGGTGAGG 59.124 52.381 0.00 0.00 32.61 3.86
1895 2077 1.490490 TCTGAAGCAGTTTGGTGAGGT 59.510 47.619 0.00 0.00 32.61 3.85
1896 2078 2.092429 TCTGAAGCAGTTTGGTGAGGTT 60.092 45.455 0.00 0.00 32.61 3.50
1897 2079 2.689983 CTGAAGCAGTTTGGTGAGGTTT 59.310 45.455 0.00 0.00 0.00 3.27
1898 2080 3.096092 TGAAGCAGTTTGGTGAGGTTTT 58.904 40.909 0.00 0.00 0.00 2.43
1899 2081 3.513515 TGAAGCAGTTTGGTGAGGTTTTT 59.486 39.130 0.00 0.00 0.00 1.94
1918 2100 5.403897 TTTTTGCTCTGTACTCTCGTTTG 57.596 39.130 0.00 0.00 0.00 2.93
1919 2101 4.316205 TTTGCTCTGTACTCTCGTTTGA 57.684 40.909 0.00 0.00 0.00 2.69
1920 2102 3.560902 TGCTCTGTACTCTCGTTTGAG 57.439 47.619 0.00 0.00 43.99 3.02
1921 2103 2.255316 GCTCTGTACTCTCGTTTGAGC 58.745 52.381 0.00 0.00 42.26 4.26
1922 2104 2.351835 GCTCTGTACTCTCGTTTGAGCA 60.352 50.000 0.00 0.00 43.18 4.26
1923 2105 3.238441 CTCTGTACTCTCGTTTGAGCAC 58.762 50.000 0.00 0.00 42.26 4.40
1924 2106 2.621526 TCTGTACTCTCGTTTGAGCACA 59.378 45.455 0.00 7.99 42.26 4.57
1925 2107 2.726760 CTGTACTCTCGTTTGAGCACAC 59.273 50.000 0.00 0.00 42.26 3.82
1926 2108 2.361119 TGTACTCTCGTTTGAGCACACT 59.639 45.455 0.00 0.00 42.26 3.55
1927 2109 2.604046 ACTCTCGTTTGAGCACACTT 57.396 45.000 0.00 0.00 42.26 3.16
1928 2110 3.728076 ACTCTCGTTTGAGCACACTTA 57.272 42.857 0.00 0.00 42.26 2.24
1929 2111 4.054780 ACTCTCGTTTGAGCACACTTAA 57.945 40.909 0.00 0.00 42.26 1.85
1930 2112 4.051922 ACTCTCGTTTGAGCACACTTAAG 58.948 43.478 0.00 0.00 42.26 1.85
1931 2113 2.800544 TCTCGTTTGAGCACACTTAAGC 59.199 45.455 1.29 0.00 42.26 3.09
1932 2114 2.543848 CTCGTTTGAGCACACTTAAGCA 59.456 45.455 1.29 0.00 34.96 3.91
1933 2115 2.939756 TCGTTTGAGCACACTTAAGCAA 59.060 40.909 1.29 0.00 0.00 3.91
1934 2116 3.002246 TCGTTTGAGCACACTTAAGCAAG 59.998 43.478 1.29 0.00 37.81 4.01
1935 2117 3.242739 CGTTTGAGCACACTTAAGCAAGT 60.243 43.478 1.29 0.00 46.15 3.16
1936 2118 4.025229 CGTTTGAGCACACTTAAGCAAGTA 60.025 41.667 1.29 0.00 43.30 2.24
1937 2119 5.334105 CGTTTGAGCACACTTAAGCAAGTAT 60.334 40.000 1.29 0.00 43.30 2.12
1938 2120 6.438763 GTTTGAGCACACTTAAGCAAGTATT 58.561 36.000 1.29 0.00 43.30 1.89
1939 2121 6.633500 TTGAGCACACTTAAGCAAGTATTT 57.367 33.333 1.29 0.00 43.30 1.40
1940 2122 6.000891 TGAGCACACTTAAGCAAGTATTTG 57.999 37.500 1.29 0.00 43.30 2.32
1941 2123 5.530915 TGAGCACACTTAAGCAAGTATTTGT 59.469 36.000 1.29 0.00 43.30 2.83
1942 2124 5.762045 AGCACACTTAAGCAAGTATTTGTG 58.238 37.500 12.00 12.00 43.30 3.33
1943 2125 4.917415 GCACACTTAAGCAAGTATTTGTGG 59.083 41.667 15.97 3.69 43.30 4.17
1944 2126 5.278266 GCACACTTAAGCAAGTATTTGTGGA 60.278 40.000 15.97 0.00 43.30 4.02
1945 2127 6.734137 CACACTTAAGCAAGTATTTGTGGAA 58.266 36.000 1.29 0.00 43.30 3.53
1946 2128 6.636850 CACACTTAAGCAAGTATTTGTGGAAC 59.363 38.462 1.29 0.00 43.30 3.62
1947 2129 6.320164 ACACTTAAGCAAGTATTTGTGGAACA 59.680 34.615 1.29 0.00 44.53 3.18
1964 2146 7.541122 GTGGAACAACCTCTGTATCTTAATC 57.459 40.000 0.00 0.00 44.16 1.75
1965 2147 7.331791 GTGGAACAACCTCTGTATCTTAATCT 58.668 38.462 0.00 0.00 44.16 2.40
1966 2148 7.492994 GTGGAACAACCTCTGTATCTTAATCTC 59.507 40.741 0.00 0.00 44.16 2.75
1967 2149 7.400339 TGGAACAACCTCTGTATCTTAATCTCT 59.600 37.037 0.00 0.00 37.23 3.10
1968 2150 7.923878 GGAACAACCTCTGTATCTTAATCTCTC 59.076 40.741 0.00 0.00 37.23 3.20
1969 2151 8.602472 AACAACCTCTGTATCTTAATCTCTCT 57.398 34.615 0.00 0.00 37.23 3.10
1970 2152 8.006298 ACAACCTCTGTATCTTAATCTCTCTG 57.994 38.462 0.00 0.00 36.10 3.35
1971 2153 7.069331 ACAACCTCTGTATCTTAATCTCTCTGG 59.931 40.741 0.00 0.00 36.10 3.86
1972 2154 6.678547 ACCTCTGTATCTTAATCTCTCTGGT 58.321 40.000 0.00 0.00 0.00 4.00
1973 2155 6.549364 ACCTCTGTATCTTAATCTCTCTGGTG 59.451 42.308 0.00 0.00 0.00 4.17
1974 2156 6.549364 CCTCTGTATCTTAATCTCTCTGGTGT 59.451 42.308 0.00 0.00 0.00 4.16
1975 2157 7.721842 CCTCTGTATCTTAATCTCTCTGGTGTA 59.278 40.741 0.00 0.00 0.00 2.90
1976 2158 8.684386 TCTGTATCTTAATCTCTCTGGTGTAG 57.316 38.462 0.00 0.00 0.00 2.74
1977 2159 8.275758 TCTGTATCTTAATCTCTCTGGTGTAGT 58.724 37.037 0.00 0.00 0.00 2.73
1978 2160 8.824756 TGTATCTTAATCTCTCTGGTGTAGTT 57.175 34.615 0.00 0.00 0.00 2.24
1979 2161 9.256228 TGTATCTTAATCTCTCTGGTGTAGTTT 57.744 33.333 0.00 0.00 0.00 2.66
1984 2166 8.773404 TTAATCTCTCTGGTGTAGTTTAAAGC 57.227 34.615 0.00 0.00 0.00 3.51
1985 2167 5.801531 TCTCTCTGGTGTAGTTTAAAGCA 57.198 39.130 0.00 0.00 0.00 3.91
1986 2168 5.539048 TCTCTCTGGTGTAGTTTAAAGCAC 58.461 41.667 8.25 8.25 0.00 4.40
1987 2169 5.069914 TCTCTCTGGTGTAGTTTAAAGCACA 59.930 40.000 15.09 8.19 33.88 4.57
1988 2170 5.676552 TCTCTGGTGTAGTTTAAAGCACAA 58.323 37.500 15.09 6.95 33.88 3.33
1989 2171 5.758296 TCTCTGGTGTAGTTTAAAGCACAAG 59.242 40.000 15.09 13.70 34.98 3.16
1990 2172 4.274950 TCTGGTGTAGTTTAAAGCACAAGC 59.725 41.667 15.09 0.00 42.56 4.01
1991 2173 3.316868 TGGTGTAGTTTAAAGCACAAGCC 59.683 43.478 15.09 9.32 43.56 4.35
1992 2174 3.305131 GGTGTAGTTTAAAGCACAAGCCC 60.305 47.826 15.09 5.97 43.56 5.19
1993 2175 3.568430 GTGTAGTTTAAAGCACAAGCCCT 59.432 43.478 10.70 0.00 43.56 5.19
1994 2176 4.037565 GTGTAGTTTAAAGCACAAGCCCTT 59.962 41.667 10.70 0.00 43.56 3.95
1995 2177 4.277423 TGTAGTTTAAAGCACAAGCCCTTC 59.723 41.667 0.00 0.00 43.56 3.46
1996 2178 3.566351 AGTTTAAAGCACAAGCCCTTCT 58.434 40.909 0.00 0.00 43.56 2.85
1997 2179 4.725490 AGTTTAAAGCACAAGCCCTTCTA 58.275 39.130 0.00 0.00 43.56 2.10
1998 2180 5.137551 AGTTTAAAGCACAAGCCCTTCTAA 58.862 37.500 0.00 0.00 43.56 2.10
1999 2181 5.009710 AGTTTAAAGCACAAGCCCTTCTAAC 59.990 40.000 0.00 0.00 43.56 2.34
2062 2246 5.590818 AGTATAGACTTGGTCCCTCAAGAA 58.409 41.667 10.99 0.00 44.98 2.52
2093 2278 5.183904 GCATACATTTGGTCCTTCAAGTCTT 59.816 40.000 0.00 0.00 0.00 3.01
2108 2297 7.820872 CCTTCAAGTCTTAAAACCGGATAAGTA 59.179 37.037 9.46 2.14 32.27 2.24
2113 2302 7.270779 AGTCTTAAAACCGGATAAGTATGGTC 58.729 38.462 9.46 3.48 32.37 4.02
2149 2376 0.887933 GCATGTTGACCGGGTTTGAT 59.112 50.000 6.32 0.00 0.00 2.57
2161 2398 2.556189 CGGGTTTGATCATGTTTGACCA 59.444 45.455 0.00 0.00 33.85 4.02
2173 2410 7.523293 TCATGTTTGACCAATGAACAGTAAT 57.477 32.000 0.00 0.00 36.80 1.89
2175 2412 8.081633 TCATGTTTGACCAATGAACAGTAATTC 58.918 33.333 0.00 0.00 36.80 2.17
2176 2413 6.434596 TGTTTGACCAATGAACAGTAATTCG 58.565 36.000 0.00 0.00 0.00 3.34
2268 2548 4.338815 TCGACATCCGAGGAGCTT 57.661 55.556 0.00 0.00 43.23 3.74
2272 2552 0.532573 GACATCCGAGGAGCTTGTGA 59.467 55.000 1.97 0.00 0.00 3.58
2273 2553 0.976641 ACATCCGAGGAGCTTGTGAA 59.023 50.000 0.00 0.00 0.00 3.18
2337 2642 4.006989 CTCCACGGATGTTATTTGACCAA 58.993 43.478 0.00 0.00 0.00 3.67
2357 2662 3.703286 AAAAAGGTTACAAGCACCGAC 57.297 42.857 0.00 0.00 39.56 4.79
2449 2795 6.449698 GTTCATCAGTCAAACATGGTCAAAT 58.550 36.000 0.00 0.00 0.00 2.32
2453 2799 3.501828 CAGTCAAACATGGTCAAATCCGA 59.498 43.478 0.00 0.00 0.00 4.55
2473 2829 1.820481 CAAACCCCGGTCAACGTGT 60.820 57.895 0.00 0.00 42.24 4.49
2489 2846 5.802956 TCAACGTGTTCAAAATCTGGTTTTC 59.197 36.000 0.00 0.00 37.93 2.29
2493 2850 5.578776 GTGTTCAAAATCTGGTTTTCGACT 58.421 37.500 0.00 0.00 37.93 4.18
2494 2851 6.510478 CGTGTTCAAAATCTGGTTTTCGACTA 60.510 38.462 0.00 0.00 37.93 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.028354 TGCATTATTCGTTTGATTGATGAAACT 58.972 29.630 4.91 0.00 32.76 2.66
64 71 1.402456 GCAAACTCTACGCTCTTCCGA 60.402 52.381 0.00 0.00 0.00 4.55
124 139 1.296056 CCGGTTACCAAACGGAGCTG 61.296 60.000 9.77 0.00 37.97 4.24
212 240 2.761195 GCCGGCGATTTGGGAAGAC 61.761 63.158 12.58 0.00 0.00 3.01
215 243 4.396271 TCGCCGGCGATTTGGGAA 62.396 61.111 45.37 23.24 44.01 3.97
495 533 1.374252 GAAGAAGAAGCGGTCGCCA 60.374 57.895 11.95 0.00 43.17 5.69
759 797 4.724602 TCGTCAGGAGCGTGCTGC 62.725 66.667 5.10 5.10 46.98 5.25
843 887 0.320374 TTCCTACGTGCTCTGGTTGG 59.680 55.000 0.00 0.00 0.00 3.77
948 1001 3.698463 GTGAACGACGGTGTGGCG 61.698 66.667 0.00 0.00 0.00 5.69
995 1048 1.449601 CCGGGACCTTCCATGAACG 60.450 63.158 0.00 0.00 38.64 3.95
998 1051 2.000701 ATGCCGGGACCTTCCATGA 61.001 57.895 2.18 0.00 38.64 3.07
999 1052 1.825191 CATGCCGGGACCTTCCATG 60.825 63.158 2.18 2.21 38.64 3.66
1000 1053 2.597340 CATGCCGGGACCTTCCAT 59.403 61.111 2.18 0.00 38.64 3.41
1001 1054 4.424711 GCATGCCGGGACCTTCCA 62.425 66.667 6.36 0.00 38.64 3.53
1003 1056 4.115199 AGGCATGCCGGGACCTTC 62.115 66.667 30.50 3.75 41.95 3.46
1004 1057 4.431131 CAGGCATGCCGGGACCTT 62.431 66.667 30.50 8.98 41.95 3.50
1006 1059 4.424711 TTCAGGCATGCCGGGACC 62.425 66.667 32.49 9.10 41.95 4.46
1007 1060 2.825836 CTTCAGGCATGCCGGGAC 60.826 66.667 32.49 9.85 41.95 4.46
1008 1061 4.802051 GCTTCAGGCATGCCGGGA 62.802 66.667 32.49 28.36 41.95 5.14
1012 1065 3.512516 GTCCGCTTCAGGCATGCC 61.513 66.667 30.12 30.12 41.91 4.40
1013 1066 3.869272 CGTCCGCTTCAGGCATGC 61.869 66.667 9.90 9.90 41.91 4.06
1026 1079 0.108804 TGCAAGAGAATCGGTCGTCC 60.109 55.000 0.00 0.00 42.67 4.79
1029 1082 1.428448 TTGTGCAAGAGAATCGGTCG 58.572 50.000 0.00 0.00 42.67 4.79
1033 1086 3.686241 TCTTCCATTGTGCAAGAGAATCG 59.314 43.478 0.00 0.00 42.67 3.34
1034 1087 5.182760 AGTTCTTCCATTGTGCAAGAGAATC 59.817 40.000 0.00 0.00 0.00 2.52
1035 1088 5.075493 AGTTCTTCCATTGTGCAAGAGAAT 58.925 37.500 0.00 0.00 0.00 2.40
1036 1089 4.464008 AGTTCTTCCATTGTGCAAGAGAA 58.536 39.130 0.00 0.00 0.00 2.87
1060 1122 1.078918 CCTCTGCAGCATCACCGAA 60.079 57.895 9.47 0.00 0.00 4.30
1073 1231 0.905357 AGTCCCCACGATTTCCTCTG 59.095 55.000 0.00 0.00 0.00 3.35
1077 1235 3.170360 GGAAGTCCCCACGATTTCC 57.830 57.895 0.00 0.00 46.52 3.13
1104 1262 1.752358 ATGGAGCGTGATGATCGGCT 61.752 55.000 10.06 10.06 32.36 5.52
1112 1270 1.741706 CTGCTTCAAATGGAGCGTGAT 59.258 47.619 9.07 0.00 0.00 3.06
1233 1391 2.859165 TGTCTTGGACCATGGAAGAC 57.141 50.000 26.72 26.72 43.91 3.01
1257 1415 4.643463 CTTCAGATGGATGGAGGAAGATG 58.357 47.826 0.00 0.00 35.04 2.90
1315 1497 1.493950 CCATGAAGCGATGGAGCGTC 61.494 60.000 6.60 0.00 45.24 5.19
1317 1499 1.227350 TCCATGAAGCGATGGAGCG 60.227 57.895 10.18 0.00 45.85 5.03
1332 1514 0.537653 TGAACAAGTGGTCGTGTCCA 59.462 50.000 0.00 0.00 35.43 4.02
1411 1593 1.133253 CCGCAGCATTGTCGTTCTG 59.867 57.895 0.00 0.00 0.00 3.02
1416 1598 2.924922 GATTGGCCGCAGCATTGTCG 62.925 60.000 0.00 0.00 42.56 4.35
1419 1601 0.526954 GAAGATTGGCCGCAGCATTG 60.527 55.000 0.00 0.00 42.56 2.82
1425 1607 2.751436 GCCTGAAGATTGGCCGCA 60.751 61.111 0.00 0.00 43.11 5.69
1540 1722 1.107114 CATCCTACCAGCGACTGAGT 58.893 55.000 8.20 0.00 32.44 3.41
1550 1732 1.383943 ATCCGTGGCCATCCTACCA 60.384 57.895 9.72 0.00 0.00 3.25
1555 1737 3.211963 GTGCATCCGTGGCCATCC 61.212 66.667 9.72 0.00 0.00 3.51
1556 1738 3.211963 GGTGCATCCGTGGCCATC 61.212 66.667 9.72 1.29 0.00 3.51
1557 1739 3.704231 GAGGTGCATCCGTGGCCAT 62.704 63.158 9.72 0.00 41.99 4.40
1558 1740 4.408821 GAGGTGCATCCGTGGCCA 62.409 66.667 0.00 0.00 41.99 5.36
1559 1741 4.101448 AGAGGTGCATCCGTGGCC 62.101 66.667 0.00 0.00 41.99 5.36
1560 1742 2.821366 CAGAGGTGCATCCGTGGC 60.821 66.667 0.00 0.00 41.99 5.01
1561 1743 1.153489 CTCAGAGGTGCATCCGTGG 60.153 63.158 0.00 0.00 41.99 4.94
1562 1744 1.812922 GCTCAGAGGTGCATCCGTG 60.813 63.158 0.00 0.00 41.99 4.94
1563 1745 1.830587 TTGCTCAGAGGTGCATCCGT 61.831 55.000 0.00 0.00 42.49 4.69
1564 1746 0.463295 ATTGCTCAGAGGTGCATCCG 60.463 55.000 0.00 0.00 42.49 4.18
1565 1747 1.760192 AATTGCTCAGAGGTGCATCC 58.240 50.000 0.00 0.00 42.49 3.51
1566 1748 2.159282 CCAAATTGCTCAGAGGTGCATC 60.159 50.000 0.00 0.00 42.49 3.91
1567 1749 1.822990 CCAAATTGCTCAGAGGTGCAT 59.177 47.619 0.00 0.00 42.49 3.96
1568 1750 1.250328 CCAAATTGCTCAGAGGTGCA 58.750 50.000 0.00 0.00 41.39 4.57
1569 1751 1.200948 GACCAAATTGCTCAGAGGTGC 59.799 52.381 0.00 0.00 0.00 5.01
1570 1752 1.815003 GGACCAAATTGCTCAGAGGTG 59.185 52.381 0.00 0.00 0.00 4.00
1571 1753 1.425066 TGGACCAAATTGCTCAGAGGT 59.575 47.619 0.00 0.00 0.00 3.85
1572 1754 1.815003 GTGGACCAAATTGCTCAGAGG 59.185 52.381 0.00 0.00 0.00 3.69
1573 1755 2.787994 AGTGGACCAAATTGCTCAGAG 58.212 47.619 0.00 0.00 0.00 3.35
1574 1756 2.957402 AGTGGACCAAATTGCTCAGA 57.043 45.000 0.00 0.00 0.00 3.27
1575 1757 3.068590 ACAAAGTGGACCAAATTGCTCAG 59.931 43.478 16.61 1.43 0.00 3.35
1576 1758 3.030291 ACAAAGTGGACCAAATTGCTCA 58.970 40.909 16.61 0.00 0.00 4.26
1577 1759 3.733443 ACAAAGTGGACCAAATTGCTC 57.267 42.857 16.61 0.00 0.00 4.26
1578 1760 3.450457 TGAACAAAGTGGACCAAATTGCT 59.550 39.130 16.61 7.90 0.00 3.91
1579 1761 3.791245 TGAACAAAGTGGACCAAATTGC 58.209 40.909 16.61 6.03 0.00 3.56
1580 1762 4.270808 GCTTGAACAAAGTGGACCAAATTG 59.729 41.667 15.56 15.56 38.25 2.32
1581 1763 4.081198 TGCTTGAACAAAGTGGACCAAATT 60.081 37.500 0.00 0.00 38.25 1.82
1582 1764 3.450457 TGCTTGAACAAAGTGGACCAAAT 59.550 39.130 0.00 0.00 38.25 2.32
1583 1765 2.828520 TGCTTGAACAAAGTGGACCAAA 59.171 40.909 0.00 0.00 38.25 3.28
1584 1766 2.451490 TGCTTGAACAAAGTGGACCAA 58.549 42.857 0.00 0.00 38.25 3.67
1585 1767 2.136298 TGCTTGAACAAAGTGGACCA 57.864 45.000 0.00 0.00 38.25 4.02
1586 1768 3.119137 AGTTTGCTTGAACAAAGTGGACC 60.119 43.478 0.00 0.00 40.74 4.46
1587 1769 4.110036 AGTTTGCTTGAACAAAGTGGAC 57.890 40.909 0.00 0.00 40.74 4.02
1588 1770 5.906113 TTAGTTTGCTTGAACAAAGTGGA 57.094 34.783 7.43 0.00 41.93 4.02
1589 1771 6.367422 TGTTTTAGTTTGCTTGAACAAAGTGG 59.633 34.615 7.43 0.00 41.93 4.00
1590 1772 7.116233 ACTGTTTTAGTTTGCTTGAACAAAGTG 59.884 33.333 7.43 0.00 41.93 3.16
1591 1773 7.151976 ACTGTTTTAGTTTGCTTGAACAAAGT 58.848 30.769 3.17 3.17 43.72 2.66
1592 1774 7.581011 ACTGTTTTAGTTTGCTTGAACAAAG 57.419 32.000 0.00 0.00 40.07 2.77
1606 1788 7.996385 AGTGCAAGAATAACAACTGTTTTAGT 58.004 30.769 0.00 0.00 42.89 2.24
1607 1789 8.745837 CAAGTGCAAGAATAACAACTGTTTTAG 58.254 33.333 0.00 0.00 39.31 1.85
1608 1790 8.247562 ACAAGTGCAAGAATAACAACTGTTTTA 58.752 29.630 0.00 0.00 39.31 1.52
1609 1791 7.096551 ACAAGTGCAAGAATAACAACTGTTTT 58.903 30.769 0.00 0.00 39.31 2.43
1610 1792 6.630071 ACAAGTGCAAGAATAACAACTGTTT 58.370 32.000 0.00 0.00 39.31 2.83
1611 1793 6.207691 ACAAGTGCAAGAATAACAACTGTT 57.792 33.333 0.07 0.07 41.73 3.16
1612 1794 5.835113 ACAAGTGCAAGAATAACAACTGT 57.165 34.783 0.00 0.00 0.00 3.55
1613 1795 7.269084 CGATAACAAGTGCAAGAATAACAACTG 59.731 37.037 0.00 0.00 0.00 3.16
1614 1796 7.172532 TCGATAACAAGTGCAAGAATAACAACT 59.827 33.333 0.00 0.00 0.00 3.16
1615 1797 7.295201 TCGATAACAAGTGCAAGAATAACAAC 58.705 34.615 0.00 0.00 0.00 3.32
1616 1798 7.428282 TCGATAACAAGTGCAAGAATAACAA 57.572 32.000 0.00 0.00 0.00 2.83
1617 1799 7.119116 ACATCGATAACAAGTGCAAGAATAACA 59.881 33.333 0.00 0.00 0.00 2.41
1618 1800 7.464358 ACATCGATAACAAGTGCAAGAATAAC 58.536 34.615 0.00 0.00 0.00 1.89
1619 1801 7.609760 ACATCGATAACAAGTGCAAGAATAA 57.390 32.000 0.00 0.00 0.00 1.40
1620 1802 7.549134 AGAACATCGATAACAAGTGCAAGAATA 59.451 33.333 0.00 0.00 0.00 1.75
1621 1803 6.372659 AGAACATCGATAACAAGTGCAAGAAT 59.627 34.615 0.00 0.00 0.00 2.40
1622 1804 5.700832 AGAACATCGATAACAAGTGCAAGAA 59.299 36.000 0.00 0.00 0.00 2.52
1623 1805 5.120674 CAGAACATCGATAACAAGTGCAAGA 59.879 40.000 0.00 0.00 0.00 3.02
1624 1806 5.120674 TCAGAACATCGATAACAAGTGCAAG 59.879 40.000 0.00 0.00 0.00 4.01
1625 1807 4.994217 TCAGAACATCGATAACAAGTGCAA 59.006 37.500 0.00 0.00 0.00 4.08
1626 1808 4.565022 TCAGAACATCGATAACAAGTGCA 58.435 39.130 0.00 0.00 0.00 4.57
1627 1809 5.107104 TGTTCAGAACATCGATAACAAGTGC 60.107 40.000 12.24 0.00 36.25 4.40
1628 1810 6.466308 TGTTCAGAACATCGATAACAAGTG 57.534 37.500 12.24 0.00 36.25 3.16
1641 1823 4.082300 ACAGCAAACACAATGTTCAGAACA 60.082 37.500 18.42 18.42 40.14 3.18
1642 1824 4.423732 ACAGCAAACACAATGTTCAGAAC 58.576 39.130 6.32 6.32 40.14 3.01
1643 1825 4.717233 ACAGCAAACACAATGTTCAGAA 57.283 36.364 0.00 0.00 40.14 3.02
1644 1826 4.717233 AACAGCAAACACAATGTTCAGA 57.283 36.364 0.00 0.00 40.14 3.27
1645 1827 5.783100 AAAACAGCAAACACAATGTTCAG 57.217 34.783 0.00 0.00 40.14 3.02
1672 1854 8.856247 CGAAATATATAAGTTGCAGCGTACATA 58.144 33.333 0.00 0.00 0.00 2.29
1673 1855 7.621426 GCGAAATATATAAGTTGCAGCGTACAT 60.621 37.037 0.00 0.00 0.00 2.29
1674 1856 6.346279 GCGAAATATATAAGTTGCAGCGTACA 60.346 38.462 0.00 0.00 0.00 2.90
1675 1857 6.007677 GCGAAATATATAAGTTGCAGCGTAC 58.992 40.000 0.00 0.00 0.00 3.67
1676 1858 5.692654 TGCGAAATATATAAGTTGCAGCGTA 59.307 36.000 0.00 0.00 0.00 4.42
1677 1859 4.509970 TGCGAAATATATAAGTTGCAGCGT 59.490 37.500 6.79 0.00 0.00 5.07
1678 1860 5.017484 TGCGAAATATATAAGTTGCAGCG 57.983 39.130 6.79 0.00 0.00 5.18
1681 1863 6.983890 TCAGACTGCGAAATATATAAGTTGCA 59.016 34.615 0.00 9.47 0.00 4.08
1682 1864 7.169982 AGTCAGACTGCGAAATATATAAGTTGC 59.830 37.037 0.91 0.00 0.00 4.17
1683 1865 8.581057 AGTCAGACTGCGAAATATATAAGTTG 57.419 34.615 0.91 0.00 0.00 3.16
1684 1866 8.414003 TGAGTCAGACTGCGAAATATATAAGTT 58.586 33.333 8.15 0.00 0.00 2.66
1685 1867 7.941919 TGAGTCAGACTGCGAAATATATAAGT 58.058 34.615 8.15 0.00 0.00 2.24
1686 1868 8.079203 ACTGAGTCAGACTGCGAAATATATAAG 58.921 37.037 26.86 0.00 35.18 1.73
1687 1869 7.941919 ACTGAGTCAGACTGCGAAATATATAA 58.058 34.615 26.86 0.00 35.18 0.98
1688 1870 7.511959 ACTGAGTCAGACTGCGAAATATATA 57.488 36.000 26.86 0.00 35.18 0.86
1689 1871 6.398234 ACTGAGTCAGACTGCGAAATATAT 57.602 37.500 26.86 0.00 35.18 0.86
1690 1872 5.836821 ACTGAGTCAGACTGCGAAATATA 57.163 39.130 26.86 0.00 35.18 0.86
1691 1873 4.727507 ACTGAGTCAGACTGCGAAATAT 57.272 40.909 26.86 0.00 35.18 1.28
1692 1874 4.486090 GAACTGAGTCAGACTGCGAAATA 58.514 43.478 26.86 0.00 35.18 1.40
1693 1875 3.321497 GAACTGAGTCAGACTGCGAAAT 58.679 45.455 26.86 0.00 35.18 2.17
1694 1876 2.545952 GGAACTGAGTCAGACTGCGAAA 60.546 50.000 26.86 0.00 35.18 3.46
1695 1877 1.000163 GGAACTGAGTCAGACTGCGAA 60.000 52.381 26.86 0.00 35.18 4.70
1696 1878 0.598562 GGAACTGAGTCAGACTGCGA 59.401 55.000 26.86 0.00 35.18 5.10
1697 1879 0.315251 TGGAACTGAGTCAGACTGCG 59.685 55.000 26.86 0.75 35.18 5.18
1698 1880 2.533266 TTGGAACTGAGTCAGACTGC 57.467 50.000 26.86 17.22 35.18 4.40
1699 1881 4.065321 AGTTTGGAACTGAGTCAGACTG 57.935 45.455 26.86 0.91 41.01 3.51
1700 1882 4.762289 AAGTTTGGAACTGAGTCAGACT 57.238 40.909 26.86 14.75 41.91 3.24
1701 1883 5.819825 AAAAGTTTGGAACTGAGTCAGAC 57.180 39.130 26.86 17.94 41.91 3.51
1702 1884 7.110155 ACTAAAAAGTTTGGAACTGAGTCAGA 58.890 34.615 26.86 0.64 41.91 3.27
1703 1885 7.065803 TGACTAAAAAGTTTGGAACTGAGTCAG 59.934 37.037 18.83 18.83 41.91 3.51
1704 1886 6.882140 TGACTAAAAAGTTTGGAACTGAGTCA 59.118 34.615 16.10 16.10 41.91 3.41
1705 1887 7.280205 TCTGACTAAAAAGTTTGGAACTGAGTC 59.720 37.037 13.16 13.16 41.91 3.36
1706 1888 7.110155 TCTGACTAAAAAGTTTGGAACTGAGT 58.890 34.615 0.00 0.00 41.91 3.41
1707 1889 7.553881 TCTGACTAAAAAGTTTGGAACTGAG 57.446 36.000 0.00 0.00 41.91 3.35
1708 1890 7.610305 AGTTCTGACTAAAAAGTTTGGAACTGA 59.390 33.333 14.65 0.00 36.65 3.41
1709 1891 7.762382 AGTTCTGACTAAAAAGTTTGGAACTG 58.238 34.615 14.65 0.00 36.65 3.16
1710 1892 7.939784 AGTTCTGACTAAAAAGTTTGGAACT 57.060 32.000 0.00 0.00 37.62 3.01
1711 1893 8.027189 ACAAGTTCTGACTAAAAAGTTTGGAAC 58.973 33.333 0.00 0.00 34.21 3.62
1712 1894 8.117813 ACAAGTTCTGACTAAAAAGTTTGGAA 57.882 30.769 0.00 0.00 34.21 3.53
1713 1895 7.696992 ACAAGTTCTGACTAAAAAGTTTGGA 57.303 32.000 0.00 0.00 34.21 3.53
1714 1896 8.026607 TGAACAAGTTCTGACTAAAAAGTTTGG 58.973 33.333 13.49 0.00 40.14 3.28
1715 1897 8.964420 TGAACAAGTTCTGACTAAAAAGTTTG 57.036 30.769 13.49 0.00 40.14 2.93
1717 1899 9.573133 CATTGAACAAGTTCTGACTAAAAAGTT 57.427 29.630 13.49 0.00 40.14 2.66
1718 1900 8.739972 ACATTGAACAAGTTCTGACTAAAAAGT 58.260 29.630 13.49 0.00 40.14 2.66
1719 1901 9.573133 AACATTGAACAAGTTCTGACTAAAAAG 57.427 29.630 13.49 0.00 40.14 2.27
1720 1902 9.352784 CAACATTGAACAAGTTCTGACTAAAAA 57.647 29.630 13.49 0.00 40.14 1.94
1721 1903 8.735315 TCAACATTGAACAAGTTCTGACTAAAA 58.265 29.630 13.49 0.00 40.14 1.52
1722 1904 8.275015 TCAACATTGAACAAGTTCTGACTAAA 57.725 30.769 13.49 0.01 40.14 1.85
1723 1905 7.857734 TCAACATTGAACAAGTTCTGACTAA 57.142 32.000 13.49 0.66 40.14 2.24
1724 1906 8.450578 AATCAACATTGAACAAGTTCTGACTA 57.549 30.769 13.49 0.00 41.13 2.59
1725 1907 6.949352 ATCAACATTGAACAAGTTCTGACT 57.051 33.333 13.49 0.00 41.13 3.41
1726 1908 7.489113 ACAAATCAACATTGAACAAGTTCTGAC 59.511 33.333 13.49 0.00 41.13 3.51
1727 1909 7.546358 ACAAATCAACATTGAACAAGTTCTGA 58.454 30.769 13.49 8.85 41.13 3.27
1728 1910 7.760131 ACAAATCAACATTGAACAAGTTCTG 57.240 32.000 13.49 7.41 41.13 3.02
1729 1911 8.686334 AGTACAAATCAACATTGAACAAGTTCT 58.314 29.630 13.49 0.00 41.13 3.01
1730 1912 8.856490 AGTACAAATCAACATTGAACAAGTTC 57.144 30.769 6.01 6.01 41.13 3.01
1732 1914 9.950680 CTTAGTACAAATCAACATTGAACAAGT 57.049 29.630 0.00 0.00 41.13 3.16
1739 1921 9.669353 GCCATATCTTAGTACAAATCAACATTG 57.331 33.333 0.00 0.00 0.00 2.82
1740 1922 9.407380 TGCCATATCTTAGTACAAATCAACATT 57.593 29.630 0.00 0.00 0.00 2.71
1741 1923 8.978874 TGCCATATCTTAGTACAAATCAACAT 57.021 30.769 0.00 0.00 0.00 2.71
1742 1924 8.046708 ACTGCCATATCTTAGTACAAATCAACA 58.953 33.333 0.00 0.00 0.00 3.33
1743 1925 8.338259 CACTGCCATATCTTAGTACAAATCAAC 58.662 37.037 0.00 0.00 0.00 3.18
1744 1926 8.264347 TCACTGCCATATCTTAGTACAAATCAA 58.736 33.333 0.00 0.00 0.00 2.57
1745 1927 7.710907 GTCACTGCCATATCTTAGTACAAATCA 59.289 37.037 0.00 0.00 0.00 2.57
1746 1928 7.928706 AGTCACTGCCATATCTTAGTACAAATC 59.071 37.037 0.00 0.00 0.00 2.17
1747 1929 7.796054 AGTCACTGCCATATCTTAGTACAAAT 58.204 34.615 0.00 0.00 0.00 2.32
1748 1930 7.182817 AGTCACTGCCATATCTTAGTACAAA 57.817 36.000 0.00 0.00 0.00 2.83
1749 1931 6.791867 AGTCACTGCCATATCTTAGTACAA 57.208 37.500 0.00 0.00 0.00 2.41
1750 1932 6.791867 AAGTCACTGCCATATCTTAGTACA 57.208 37.500 0.00 0.00 0.00 2.90
1751 1933 7.493367 AGAAAGTCACTGCCATATCTTAGTAC 58.507 38.462 0.00 0.00 0.00 2.73
1752 1934 7.661536 AGAAAGTCACTGCCATATCTTAGTA 57.338 36.000 0.00 0.00 0.00 1.82
1753 1935 6.552445 AGAAAGTCACTGCCATATCTTAGT 57.448 37.500 0.00 0.00 0.00 2.24
1754 1936 7.601886 CCATAGAAAGTCACTGCCATATCTTAG 59.398 40.741 0.00 0.00 0.00 2.18
1755 1937 7.445121 CCATAGAAAGTCACTGCCATATCTTA 58.555 38.462 0.00 0.00 0.00 2.10
1756 1938 6.294473 CCATAGAAAGTCACTGCCATATCTT 58.706 40.000 0.00 0.00 0.00 2.40
1757 1939 5.221803 CCCATAGAAAGTCACTGCCATATCT 60.222 44.000 0.00 0.00 0.00 1.98
1758 1940 4.999950 CCCATAGAAAGTCACTGCCATATC 59.000 45.833 0.00 0.00 0.00 1.63
1759 1941 4.660303 TCCCATAGAAAGTCACTGCCATAT 59.340 41.667 0.00 0.00 0.00 1.78
1760 1942 4.037222 TCCCATAGAAAGTCACTGCCATA 58.963 43.478 0.00 0.00 0.00 2.74
1761 1943 2.846206 TCCCATAGAAAGTCACTGCCAT 59.154 45.455 0.00 0.00 0.00 4.40
1762 1944 2.265367 TCCCATAGAAAGTCACTGCCA 58.735 47.619 0.00 0.00 0.00 4.92
1763 1945 3.567478 ATCCCATAGAAAGTCACTGCC 57.433 47.619 0.00 0.00 0.00 4.85
1764 1946 4.574013 CAGAATCCCATAGAAAGTCACTGC 59.426 45.833 0.00 0.00 0.00 4.40
1765 1947 5.982356 TCAGAATCCCATAGAAAGTCACTG 58.018 41.667 0.00 0.00 0.00 3.66
1766 1948 5.396213 GCTCAGAATCCCATAGAAAGTCACT 60.396 44.000 0.00 0.00 0.00 3.41
1767 1949 4.813697 GCTCAGAATCCCATAGAAAGTCAC 59.186 45.833 0.00 0.00 0.00 3.67
1768 1950 4.718774 AGCTCAGAATCCCATAGAAAGTCA 59.281 41.667 0.00 0.00 0.00 3.41
1769 1951 5.289083 AGCTCAGAATCCCATAGAAAGTC 57.711 43.478 0.00 0.00 0.00 3.01
1770 1952 5.045286 ACAAGCTCAGAATCCCATAGAAAGT 60.045 40.000 0.00 0.00 0.00 2.66
1771 1953 5.296283 CACAAGCTCAGAATCCCATAGAAAG 59.704 44.000 0.00 0.00 0.00 2.62
1772 1954 5.045651 TCACAAGCTCAGAATCCCATAGAAA 60.046 40.000 0.00 0.00 0.00 2.52
1773 1955 4.471025 TCACAAGCTCAGAATCCCATAGAA 59.529 41.667 0.00 0.00 0.00 2.10
1774 1956 4.033009 TCACAAGCTCAGAATCCCATAGA 58.967 43.478 0.00 0.00 0.00 1.98
1775 1957 4.412796 TCACAAGCTCAGAATCCCATAG 57.587 45.455 0.00 0.00 0.00 2.23
1776 1958 4.202398 GGATCACAAGCTCAGAATCCCATA 60.202 45.833 0.00 0.00 0.00 2.74
1777 1959 3.434739 GGATCACAAGCTCAGAATCCCAT 60.435 47.826 0.00 0.00 0.00 4.00
1778 1960 2.092753 GGATCACAAGCTCAGAATCCCA 60.093 50.000 0.00 0.00 0.00 4.37
1779 1961 2.172293 AGGATCACAAGCTCAGAATCCC 59.828 50.000 12.20 4.09 0.00 3.85
1780 1962 3.557228 AGGATCACAAGCTCAGAATCC 57.443 47.619 9.14 9.14 0.00 3.01
1781 1963 5.893897 AAAAGGATCACAAGCTCAGAATC 57.106 39.130 0.00 0.00 0.00 2.52
1782 1964 5.884792 CCTAAAAGGATCACAAGCTCAGAAT 59.115 40.000 0.00 0.00 37.67 2.40
1783 1965 5.248640 CCTAAAAGGATCACAAGCTCAGAA 58.751 41.667 0.00 0.00 37.67 3.02
1784 1966 4.836825 CCTAAAAGGATCACAAGCTCAGA 58.163 43.478 0.00 0.00 37.67 3.27
1785 1967 3.376546 GCCTAAAAGGATCACAAGCTCAG 59.623 47.826 0.00 0.00 37.67 3.35
1786 1968 3.244875 TGCCTAAAAGGATCACAAGCTCA 60.245 43.478 0.00 0.00 37.67 4.26
1787 1969 3.347216 TGCCTAAAAGGATCACAAGCTC 58.653 45.455 0.00 0.00 37.67 4.09
1788 1970 3.439857 TGCCTAAAAGGATCACAAGCT 57.560 42.857 0.00 0.00 37.67 3.74
1789 1971 3.445096 ACATGCCTAAAAGGATCACAAGC 59.555 43.478 0.00 0.00 37.67 4.01
1790 1972 5.882557 AGTACATGCCTAAAAGGATCACAAG 59.117 40.000 0.00 0.00 37.67 3.16
1791 1973 5.815581 AGTACATGCCTAAAAGGATCACAA 58.184 37.500 0.00 0.00 37.67 3.33
1792 1974 5.435686 AGTACATGCCTAAAAGGATCACA 57.564 39.130 0.00 0.00 37.67 3.58
1793 1975 7.445945 AGATAGTACATGCCTAAAAGGATCAC 58.554 38.462 0.00 0.00 37.67 3.06
1794 1976 7.618019 AGATAGTACATGCCTAAAAGGATCA 57.382 36.000 0.00 0.00 37.67 2.92
1795 1977 7.095017 GCAAGATAGTACATGCCTAAAAGGATC 60.095 40.741 0.00 0.00 37.67 3.36
1796 1978 6.712547 GCAAGATAGTACATGCCTAAAAGGAT 59.287 38.462 0.00 0.00 37.67 3.24
1797 1979 6.055588 GCAAGATAGTACATGCCTAAAAGGA 58.944 40.000 0.00 0.00 37.67 3.36
1798 1980 5.050091 CGCAAGATAGTACATGCCTAAAAGG 60.050 44.000 0.00 0.00 43.02 3.11
1799 1981 5.523916 ACGCAAGATAGTACATGCCTAAAAG 59.476 40.000 0.00 0.00 43.62 2.27
1800 1982 5.424757 ACGCAAGATAGTACATGCCTAAAA 58.575 37.500 0.00 0.00 43.62 1.52
1801 1983 5.018539 ACGCAAGATAGTACATGCCTAAA 57.981 39.130 0.00 0.00 43.62 1.85
1802 1984 4.500887 GGACGCAAGATAGTACATGCCTAA 60.501 45.833 0.00 0.00 43.62 2.69
1803 1985 3.005472 GGACGCAAGATAGTACATGCCTA 59.995 47.826 0.00 0.00 43.62 3.93
1804 1986 2.224066 GGACGCAAGATAGTACATGCCT 60.224 50.000 0.00 0.00 43.62 4.75
1805 1987 2.135933 GGACGCAAGATAGTACATGCC 58.864 52.381 0.00 0.00 43.62 4.40
1806 1988 2.135933 GGGACGCAAGATAGTACATGC 58.864 52.381 0.00 0.00 43.62 4.06
1807 1989 3.735237 AGGGACGCAAGATAGTACATG 57.265 47.619 0.00 0.00 43.62 3.21
1808 1990 5.077564 TCATAGGGACGCAAGATAGTACAT 58.922 41.667 0.00 0.00 43.62 2.29
1809 1991 4.466827 TCATAGGGACGCAAGATAGTACA 58.533 43.478 0.00 0.00 43.62 2.90
1810 1992 5.047943 ACATCATAGGGACGCAAGATAGTAC 60.048 44.000 0.00 0.00 43.62 2.73
1811 1993 5.077564 ACATCATAGGGACGCAAGATAGTA 58.922 41.667 0.00 0.00 43.62 1.82
1812 1994 3.898123 ACATCATAGGGACGCAAGATAGT 59.102 43.478 0.00 0.00 43.62 2.12
1813 1995 4.527509 ACATCATAGGGACGCAAGATAG 57.472 45.455 0.00 0.00 43.62 2.08
1814 1996 4.100963 ACAACATCATAGGGACGCAAGATA 59.899 41.667 0.00 0.00 43.62 1.98
1815 1997 3.118261 ACAACATCATAGGGACGCAAGAT 60.118 43.478 0.00 0.00 43.62 2.40
1816 1998 2.236146 ACAACATCATAGGGACGCAAGA 59.764 45.455 0.00 0.00 43.62 3.02
1818 2000 2.027653 TCACAACATCATAGGGACGCAA 60.028 45.455 0.00 0.00 0.00 4.85
1819 2001 1.552792 TCACAACATCATAGGGACGCA 59.447 47.619 0.00 0.00 0.00 5.24
1820 2002 2.205074 CTCACAACATCATAGGGACGC 58.795 52.381 0.00 0.00 0.00 5.19
1821 2003 3.526931 ACTCACAACATCATAGGGACG 57.473 47.619 0.00 0.00 0.00 4.79
1822 2004 4.579869 ACAACTCACAACATCATAGGGAC 58.420 43.478 0.00 0.00 0.00 4.46
1823 2005 4.908601 ACAACTCACAACATCATAGGGA 57.091 40.909 0.00 0.00 0.00 4.20
1824 2006 4.093408 CGAACAACTCACAACATCATAGGG 59.907 45.833 0.00 0.00 0.00 3.53
1825 2007 4.436050 GCGAACAACTCACAACATCATAGG 60.436 45.833 0.00 0.00 0.00 2.57
1826 2008 4.152223 TGCGAACAACTCACAACATCATAG 59.848 41.667 0.00 0.00 0.00 2.23
1827 2009 4.061596 TGCGAACAACTCACAACATCATA 58.938 39.130 0.00 0.00 0.00 2.15
1828 2010 2.877786 TGCGAACAACTCACAACATCAT 59.122 40.909 0.00 0.00 0.00 2.45
1829 2011 2.031560 GTGCGAACAACTCACAACATCA 59.968 45.455 0.00 0.00 34.74 3.07
1830 2012 2.639751 GTGCGAACAACTCACAACATC 58.360 47.619 0.00 0.00 34.74 3.06
1831 2013 1.003972 CGTGCGAACAACTCACAACAT 60.004 47.619 0.00 0.00 34.32 2.71
1832 2014 0.371989 CGTGCGAACAACTCACAACA 59.628 50.000 0.00 0.00 34.32 3.33
1833 2015 0.923911 GCGTGCGAACAACTCACAAC 60.924 55.000 0.00 0.00 34.32 3.32
1834 2016 1.350319 GCGTGCGAACAACTCACAA 59.650 52.632 0.00 0.00 34.32 3.33
1835 2017 1.811679 TGCGTGCGAACAACTCACA 60.812 52.632 0.00 0.00 34.32 3.58
1836 2018 1.367665 GTGCGTGCGAACAACTCAC 60.368 57.895 0.00 0.00 0.00 3.51
1837 2019 2.866010 CGTGCGTGCGAACAACTCA 61.866 57.895 3.48 0.00 0.00 3.41
1838 2020 2.128128 CGTGCGTGCGAACAACTC 60.128 61.111 3.48 0.00 0.00 3.01
1839 2021 1.973137 AAACGTGCGTGCGAACAACT 61.973 50.000 3.48 0.00 35.59 3.16
1840 2022 1.581657 AAACGTGCGTGCGAACAAC 60.582 52.632 3.48 0.00 35.59 3.32
1841 2023 1.581402 CAAACGTGCGTGCGAACAA 60.581 52.632 3.48 0.00 35.59 2.83
1842 2024 2.022069 CAAACGTGCGTGCGAACA 59.978 55.556 3.48 0.00 35.59 3.18
1843 2025 2.720750 CCAAACGTGCGTGCGAAC 60.721 61.111 7.67 0.00 35.59 3.95
1844 2026 2.634702 GAACCAAACGTGCGTGCGAA 62.635 55.000 7.67 0.00 35.59 4.70
1845 2027 3.158011 GAACCAAACGTGCGTGCGA 62.158 57.895 7.67 0.00 35.59 5.10
1846 2028 1.823260 TAGAACCAAACGTGCGTGCG 61.823 55.000 0.00 0.00 37.94 5.34
1847 2029 0.515564 ATAGAACCAAACGTGCGTGC 59.484 50.000 0.00 0.00 0.00 5.34
1848 2030 1.795872 TCATAGAACCAAACGTGCGTG 59.204 47.619 0.00 0.00 0.00 5.34
1849 2031 2.157834 TCATAGAACCAAACGTGCGT 57.842 45.000 0.00 0.00 0.00 5.24
1850 2032 3.124466 TGATTCATAGAACCAAACGTGCG 59.876 43.478 0.00 0.00 0.00 5.34
1851 2033 4.678509 TGATTCATAGAACCAAACGTGC 57.321 40.909 0.00 0.00 0.00 5.34
1852 2034 6.147821 AGACTTGATTCATAGAACCAAACGTG 59.852 38.462 0.00 0.00 0.00 4.49
1853 2035 6.147821 CAGACTTGATTCATAGAACCAAACGT 59.852 38.462 0.00 0.00 0.00 3.99
1854 2036 6.368791 TCAGACTTGATTCATAGAACCAAACG 59.631 38.462 0.00 0.00 0.00 3.60
1855 2037 7.672983 TCAGACTTGATTCATAGAACCAAAC 57.327 36.000 0.00 0.00 0.00 2.93
1856 2038 7.094634 GCTTCAGACTTGATTCATAGAACCAAA 60.095 37.037 0.00 0.00 32.27 3.28
1857 2039 6.372659 GCTTCAGACTTGATTCATAGAACCAA 59.627 38.462 0.00 0.00 32.27 3.67
1858 2040 5.877012 GCTTCAGACTTGATTCATAGAACCA 59.123 40.000 0.00 0.00 32.27 3.67
1859 2041 5.877012 TGCTTCAGACTTGATTCATAGAACC 59.123 40.000 0.00 0.00 32.27 3.62
1860 2042 6.593382 ACTGCTTCAGACTTGATTCATAGAAC 59.407 38.462 0.29 0.00 35.18 3.01
1861 2043 6.705302 ACTGCTTCAGACTTGATTCATAGAA 58.295 36.000 0.29 0.00 35.18 2.10
1862 2044 6.291648 ACTGCTTCAGACTTGATTCATAGA 57.708 37.500 0.29 0.00 35.18 1.98
1863 2045 6.981762 AACTGCTTCAGACTTGATTCATAG 57.018 37.500 0.29 0.00 35.18 2.23
1864 2046 6.149973 CCAAACTGCTTCAGACTTGATTCATA 59.850 38.462 0.29 0.00 33.30 2.15
1865 2047 5.048224 CCAAACTGCTTCAGACTTGATTCAT 60.048 40.000 0.29 0.00 33.30 2.57
1866 2048 4.276678 CCAAACTGCTTCAGACTTGATTCA 59.723 41.667 0.29 0.00 33.30 2.57
1867 2049 4.276926 ACCAAACTGCTTCAGACTTGATTC 59.723 41.667 0.29 0.00 33.30 2.52
1868 2050 4.037208 CACCAAACTGCTTCAGACTTGATT 59.963 41.667 0.29 0.00 33.30 2.57
1869 2051 3.567164 CACCAAACTGCTTCAGACTTGAT 59.433 43.478 0.29 0.00 33.30 2.57
1870 2052 2.945008 CACCAAACTGCTTCAGACTTGA 59.055 45.455 0.29 0.00 33.30 3.02
1871 2053 2.945008 TCACCAAACTGCTTCAGACTTG 59.055 45.455 0.29 4.20 35.18 3.16
1872 2054 3.209410 CTCACCAAACTGCTTCAGACTT 58.791 45.455 0.29 0.00 35.18 3.01
1873 2055 2.486191 CCTCACCAAACTGCTTCAGACT 60.486 50.000 0.29 0.00 35.18 3.24
1874 2056 1.876156 CCTCACCAAACTGCTTCAGAC 59.124 52.381 0.29 0.00 35.18 3.51
1875 2057 1.490490 ACCTCACCAAACTGCTTCAGA 59.510 47.619 0.29 0.00 35.18 3.27
1876 2058 1.972872 ACCTCACCAAACTGCTTCAG 58.027 50.000 0.00 0.00 37.52 3.02
1877 2059 2.435372 AACCTCACCAAACTGCTTCA 57.565 45.000 0.00 0.00 0.00 3.02
1878 2060 3.801114 AAAACCTCACCAAACTGCTTC 57.199 42.857 0.00 0.00 0.00 3.86
1909 2091 3.120854 GCTTAAGTGTGCTCAAACGAGAG 60.121 47.826 4.02 0.00 38.68 3.20
1910 2092 2.800544 GCTTAAGTGTGCTCAAACGAGA 59.199 45.455 4.02 0.00 31.68 4.04
1911 2093 2.543848 TGCTTAAGTGTGCTCAAACGAG 59.456 45.455 4.02 0.00 0.00 4.18
1912 2094 2.556257 TGCTTAAGTGTGCTCAAACGA 58.444 42.857 4.02 0.00 0.00 3.85
1913 2095 3.242739 ACTTGCTTAAGTGTGCTCAAACG 60.243 43.478 4.02 0.00 0.00 3.60
1914 2096 4.292977 ACTTGCTTAAGTGTGCTCAAAC 57.707 40.909 4.02 0.00 0.00 2.93
1915 2097 6.633500 AATACTTGCTTAAGTGTGCTCAAA 57.367 33.333 4.02 0.00 34.37 2.69
1916 2098 6.039270 ACAAATACTTGCTTAAGTGTGCTCAA 59.961 34.615 4.02 0.00 35.84 3.02
1917 2099 5.530915 ACAAATACTTGCTTAAGTGTGCTCA 59.469 36.000 4.02 0.00 35.84 4.26
1918 2100 5.853282 CACAAATACTTGCTTAAGTGTGCTC 59.147 40.000 4.02 0.00 35.84 4.26
1919 2101 5.278463 CCACAAATACTTGCTTAAGTGTGCT 60.278 40.000 4.02 0.00 35.84 4.40
1920 2102 4.917415 CCACAAATACTTGCTTAAGTGTGC 59.083 41.667 4.02 0.00 35.84 4.57
1921 2103 6.312399 TCCACAAATACTTGCTTAAGTGTG 57.688 37.500 4.02 7.81 35.84 3.82
1922 2104 6.320164 TGTTCCACAAATACTTGCTTAAGTGT 59.680 34.615 4.02 4.04 35.84 3.55
1923 2105 6.734137 TGTTCCACAAATACTTGCTTAAGTG 58.266 36.000 4.02 0.00 35.84 3.16
1924 2106 6.952773 TGTTCCACAAATACTTGCTTAAGT 57.047 33.333 4.02 0.00 35.84 2.24
1925 2107 6.640907 GGTTGTTCCACAAATACTTGCTTAAG 59.359 38.462 0.00 0.00 40.15 1.85
1926 2108 6.322712 AGGTTGTTCCACAAATACTTGCTTAA 59.677 34.615 0.00 0.00 40.15 1.85
1927 2109 5.830991 AGGTTGTTCCACAAATACTTGCTTA 59.169 36.000 0.00 0.00 40.15 3.09
1928 2110 4.649218 AGGTTGTTCCACAAATACTTGCTT 59.351 37.500 0.00 0.00 40.15 3.91
1929 2111 4.215109 AGGTTGTTCCACAAATACTTGCT 58.785 39.130 0.00 0.00 40.15 3.91
1930 2112 4.278419 AGAGGTTGTTCCACAAATACTTGC 59.722 41.667 0.00 0.00 40.15 4.01
1931 2113 5.299279 ACAGAGGTTGTTCCACAAATACTTG 59.701 40.000 0.00 0.00 40.15 3.16
1932 2114 5.445964 ACAGAGGTTGTTCCACAAATACTT 58.554 37.500 0.00 0.00 40.15 2.24
1933 2115 5.048846 ACAGAGGTTGTTCCACAAATACT 57.951 39.130 0.00 0.00 40.15 2.12
1934 2116 6.879458 AGATACAGAGGTTGTTCCACAAATAC 59.121 38.462 0.00 0.00 40.15 1.89
1935 2117 7.016153 AGATACAGAGGTTGTTCCACAAATA 57.984 36.000 0.00 0.00 40.15 1.40
1936 2118 5.880901 AGATACAGAGGTTGTTCCACAAAT 58.119 37.500 0.00 0.00 40.15 2.32
1937 2119 5.304686 AGATACAGAGGTTGTTCCACAAA 57.695 39.130 0.00 0.00 40.15 2.83
1938 2120 4.974645 AGATACAGAGGTTGTTCCACAA 57.025 40.909 0.00 0.00 41.29 3.33
1939 2121 4.974645 AAGATACAGAGGTTGTTCCACA 57.025 40.909 0.00 0.00 41.29 4.17
1940 2122 7.331791 AGATTAAGATACAGAGGTTGTTCCAC 58.668 38.462 0.00 0.00 41.29 4.02
1941 2123 7.400339 AGAGATTAAGATACAGAGGTTGTTCCA 59.600 37.037 0.00 0.00 41.29 3.53
1942 2124 7.787028 AGAGATTAAGATACAGAGGTTGTTCC 58.213 38.462 0.00 0.00 41.29 3.62
1943 2125 8.691797 AGAGAGATTAAGATACAGAGGTTGTTC 58.308 37.037 0.00 0.00 41.29 3.18
1944 2126 8.474025 CAGAGAGATTAAGATACAGAGGTTGTT 58.526 37.037 0.00 0.00 41.29 2.83
1945 2127 7.069331 CCAGAGAGATTAAGATACAGAGGTTGT 59.931 40.741 0.00 0.00 43.96 3.32
1946 2128 7.069331 ACCAGAGAGATTAAGATACAGAGGTTG 59.931 40.741 0.00 0.00 0.00 3.77
1947 2129 7.069331 CACCAGAGAGATTAAGATACAGAGGTT 59.931 40.741 0.00 0.00 0.00 3.50
1948 2130 6.549364 CACCAGAGAGATTAAGATACAGAGGT 59.451 42.308 0.00 0.00 0.00 3.85
1949 2131 6.549364 ACACCAGAGAGATTAAGATACAGAGG 59.451 42.308 0.00 0.00 0.00 3.69
1950 2132 7.581213 ACACCAGAGAGATTAAGATACAGAG 57.419 40.000 0.00 0.00 0.00 3.35
1951 2133 8.275758 ACTACACCAGAGAGATTAAGATACAGA 58.724 37.037 0.00 0.00 0.00 3.41
1952 2134 8.458573 ACTACACCAGAGAGATTAAGATACAG 57.541 38.462 0.00 0.00 0.00 2.74
1953 2135 8.824756 AACTACACCAGAGAGATTAAGATACA 57.175 34.615 0.00 0.00 0.00 2.29
1958 2140 8.874816 GCTTTAAACTACACCAGAGAGATTAAG 58.125 37.037 0.00 0.00 0.00 1.85
1959 2141 8.372459 TGCTTTAAACTACACCAGAGAGATTAA 58.628 33.333 0.00 0.00 0.00 1.40
1960 2142 7.817962 GTGCTTTAAACTACACCAGAGAGATTA 59.182 37.037 1.52 0.00 0.00 1.75
1961 2143 6.651225 GTGCTTTAAACTACACCAGAGAGATT 59.349 38.462 1.52 0.00 0.00 2.40
1962 2144 6.166982 GTGCTTTAAACTACACCAGAGAGAT 58.833 40.000 1.52 0.00 0.00 2.75
1963 2145 5.069914 TGTGCTTTAAACTACACCAGAGAGA 59.930 40.000 8.16 0.00 31.98 3.10
1964 2146 5.297547 TGTGCTTTAAACTACACCAGAGAG 58.702 41.667 8.16 0.00 31.98 3.20
1965 2147 5.284861 TGTGCTTTAAACTACACCAGAGA 57.715 39.130 8.16 0.00 31.98 3.10
1966 2148 5.560953 GCTTGTGCTTTAAACTACACCAGAG 60.561 44.000 12.78 8.17 36.03 3.35
1967 2149 4.274950 GCTTGTGCTTTAAACTACACCAGA 59.725 41.667 12.78 1.00 36.03 3.86
1968 2150 4.537015 GCTTGTGCTTTAAACTACACCAG 58.463 43.478 8.16 7.80 36.03 4.00
1969 2151 3.316868 GGCTTGTGCTTTAAACTACACCA 59.683 43.478 8.16 0.00 39.59 4.17
1970 2152 3.305131 GGGCTTGTGCTTTAAACTACACC 60.305 47.826 8.16 4.50 39.59 4.16
1971 2153 3.568430 AGGGCTTGTGCTTTAAACTACAC 59.432 43.478 4.91 4.91 39.59 2.90
1972 2154 3.827722 AGGGCTTGTGCTTTAAACTACA 58.172 40.909 0.00 0.00 39.59 2.74
1973 2155 4.519350 AGAAGGGCTTGTGCTTTAAACTAC 59.481 41.667 0.00 0.00 39.59 2.73
1974 2156 4.725490 AGAAGGGCTTGTGCTTTAAACTA 58.275 39.130 0.00 0.00 39.59 2.24
1975 2157 3.566351 AGAAGGGCTTGTGCTTTAAACT 58.434 40.909 0.00 0.00 39.59 2.66
1976 2158 5.009710 AGTTAGAAGGGCTTGTGCTTTAAAC 59.990 40.000 0.00 0.00 39.59 2.01
1977 2159 5.137551 AGTTAGAAGGGCTTGTGCTTTAAA 58.862 37.500 0.00 0.00 39.59 1.52
1978 2160 4.725490 AGTTAGAAGGGCTTGTGCTTTAA 58.275 39.130 0.00 0.00 39.59 1.52
1979 2161 4.367039 AGTTAGAAGGGCTTGTGCTTTA 57.633 40.909 0.00 0.00 39.59 1.85
1980 2162 3.229697 AGTTAGAAGGGCTTGTGCTTT 57.770 42.857 0.00 0.00 39.59 3.51
1981 2163 2.959465 AGTTAGAAGGGCTTGTGCTT 57.041 45.000 0.00 0.00 39.59 3.91
1982 2164 2.959465 AAGTTAGAAGGGCTTGTGCT 57.041 45.000 0.00 0.00 39.59 4.40
1983 2165 3.935828 CTCTAAGTTAGAAGGGCTTGTGC 59.064 47.826 13.51 0.00 33.75 4.57
1984 2166 5.407407 TCTCTAAGTTAGAAGGGCTTGTG 57.593 43.478 13.51 0.00 33.75 3.33
1985 2167 6.435292 TTTCTCTAAGTTAGAAGGGCTTGT 57.565 37.500 13.51 0.00 34.59 3.16
1986 2168 6.937465 ACTTTTCTCTAAGTTAGAAGGGCTTG 59.063 38.462 13.51 1.05 34.81 4.01
1987 2169 7.080653 ACTTTTCTCTAAGTTAGAAGGGCTT 57.919 36.000 13.51 0.00 34.81 4.35
1988 2170 6.689663 ACTTTTCTCTAAGTTAGAAGGGCT 57.310 37.500 13.51 0.00 34.81 5.19
1989 2171 8.041919 ACATACTTTTCTCTAAGTTAGAAGGGC 58.958 37.037 13.51 0.00 39.08 5.19
1990 2172 9.945904 AACATACTTTTCTCTAAGTTAGAAGGG 57.054 33.333 13.51 3.07 39.08 3.95
1998 2180 8.847196 GGGACAAAAACATACTTTTCTCTAAGT 58.153 33.333 0.00 0.00 41.13 2.24
1999 2181 9.067986 AGGGACAAAAACATACTTTTCTCTAAG 57.932 33.333 0.00 0.00 0.00 2.18
2062 2246 5.760484 AGGACCAAATGTATGCCAAAAAT 57.240 34.783 0.00 0.00 0.00 1.82
2093 2278 5.954153 TGGACCATACTTATCCGGTTTTA 57.046 39.130 0.00 0.00 35.06 1.52
2113 2302 8.442384 GTCAACATGCATAAAATTAGGTTTTGG 58.558 33.333 0.00 0.00 40.17 3.28
2121 2311 4.707448 ACCCGGTCAACATGCATAAAATTA 59.293 37.500 0.00 0.00 0.00 1.40
2122 2312 3.513515 ACCCGGTCAACATGCATAAAATT 59.486 39.130 0.00 0.00 0.00 1.82
2129 2319 0.466372 TCAAACCCGGTCAACATGCA 60.466 50.000 0.00 0.00 0.00 3.96
2149 2376 6.951062 TTACTGTTCATTGGTCAAACATGA 57.049 33.333 0.00 0.00 32.85 3.07
2232 2492 7.033530 TGTCGAAATACCACAAATTTTCACT 57.966 32.000 0.00 0.00 0.00 3.41
2337 2642 2.359848 GGTCGGTGCTTGTAACCTTTTT 59.640 45.455 0.00 0.00 35.39 1.94
2343 2648 1.957186 TGCGGTCGGTGCTTGTAAC 60.957 57.895 0.00 0.00 0.00 2.50
2357 2662 2.259204 CAACATGCTTGGGTGCGG 59.741 61.111 4.44 0.00 35.36 5.69
2420 2737 4.635765 CCATGTTTGACTGATGAACCGTAT 59.364 41.667 0.00 0.00 0.00 3.06
2424 2741 3.820467 TGACCATGTTTGACTGATGAACC 59.180 43.478 0.00 0.00 0.00 3.62
2449 2795 1.481901 TTGACCGGGGTTTGATCGGA 61.482 55.000 6.32 0.00 45.96 4.55
2453 2799 0.887387 CACGTTGACCGGGGTTTGAT 60.887 55.000 6.32 0.00 42.24 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.