AutoCloner

Multiple sequence alignment - TraesCS7B01G107700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G107700	chr7B	100.000	2423	0	0	1	2423	124128449	124130871	0.000000e+00	4475.0
1	TraesCS7B01G107700	chr7B	91.801	683	50	6	1743	2423	697093253	697092575	0.000000e+00	946.0
2	TraesCS7B01G107700	chr7B	83.693	742	50	36	755	1456	124141099	124141809	3.400000e-178	634.0
3	TraesCS7B01G107700	chr7B	88.994	527	39	9	980	1494	124360320	124360839	3.400000e-178	634.0
4	TraesCS7B01G107700	chr7B	88.411	535	39	7	980	1494	124257416	124257947	7.360000e-175	623.0
5	TraesCS7B01G107700	chr7B	88.720	461	37	8	985	1436	124531575	124532029	1.270000e-152	549.0
6	TraesCS7B01G107700	chr7B	79.859	854	91	47	758	1563	124536361	124537181	1.270000e-152	549.0
7	TraesCS7B01G107700	chr7B	91.358	162	12	1	1451	1610	124141833	124141994	1.130000e-53	220.0
8	TraesCS7B01G107700	chr7D	90.568	1145	69	20	503	1615	162114642	162115779	0.000000e+00	1480.0
9	TraesCS7B01G107700	chr7D	89.535	516	39	9	998	1501	162214614	162215126	7.300000e-180	640.0
10	TraesCS7B01G107700	chr7D	86.379	602	50	12	980	1563	162201373	162201960	1.580000e-176	628.0
11	TraesCS7B01G107700	chr7D	90.780	141	12	1	239	378	503636671	503636531	1.140000e-43	187.0
12	TraesCS7B01G107700	chr7D	88.000	75	5	3	1626	1696	162115974	162116048	4.290000e-13	86.1
13	TraesCS7B01G107700	chr7A	88.292	1247	89	21	503	1717	163229278	163230499	0.000000e+00	1441.0
14	TraesCS7B01G107700	chr7A	92.229	682	46	6	1746	2423	547149930	547149252	0.000000e+00	959.0
15	TraesCS7B01G107700	chr7A	91.947	683	49	6	1743	2423	211723900	211723222	0.000000e+00	952.0
16	TraesCS7B01G107700	chr7A	90.476	504	45	3	998	1501	163353203	163353703	0.000000e+00	662.0
17	TraesCS7B01G107700	chr7A	87.638	542	42	9	985	1505	163360995	163361532	7.410000e-170	606.0
18	TraesCS7B01G107700	chr6B	96.318	679	23	2	1746	2423	259073194	259072517	0.000000e+00	1114.0
19	TraesCS7B01G107700	chr4D	93.098	681	42	5	1745	2423	355818481	355817804	0.000000e+00	992.0
20	TraesCS7B01G107700	chr4D	92.962	682	43	5	1744	2423	313885089	313884411	0.000000e+00	989.0
21	TraesCS7B01G107700	chr2D	92.805	681	44	5	1742	2420	568249082	568248405	0.000000e+00	981.0
22	TraesCS7B01G107700	chr2D	88.742	302	29	5	140	439	622337681	622337383	4.920000e-97	364.0
23	TraesCS7B01G107700	chr3A	92.353	680	47	5	1746	2423	33139895	33140571	0.000000e+00	963.0
24	TraesCS7B01G107700	chr6D	92.059	680	40	11	1746	2423	451770619	451769952	0.000000e+00	944.0
25	TraesCS7B01G107700	chr5B	93.898	508	24	5	1	503	636980374	636980879	0.000000e+00	760.0
26	TraesCS7B01G107700	chr3B	93.275	461	21	9	53	507	474621949	474621493	0.000000e+00	671.0
27	TraesCS7B01G107700	chr2A	81.529	471	49	24	56	503	3517865	3518320	1.070000e-93	353.0
28	TraesCS7B01G107700	chr4A	88.346	266	25	3	71	332	615226740	615226477	5.030000e-82	315.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G107700	chr7B	124128449	124130871	2422	False	4475.00	4475	100.0000	1	2423	1	chr7B.!!$F1	2422
1	TraesCS7B01G107700	chr7B	697092575	697093253	678	True	946.00	946	91.8010	1743	2423	1	chr7B.!!$R1	680
2	TraesCS7B01G107700	chr7B	124360320	124360839	519	False	634.00	634	88.9940	980	1494	1	chr7B.!!$F3	514
3	TraesCS7B01G107700	chr7B	124257416	124257947	531	False	623.00	623	88.4110	980	1494	1	chr7B.!!$F2	514
4	TraesCS7B01G107700	chr7B	124536361	124537181	820	False	549.00	549	79.8590	758	1563	1	chr7B.!!$F5	805
5	TraesCS7B01G107700	chr7B	124141099	124141994	895	False	427.00	634	87.5255	755	1610	2	chr7B.!!$F6	855
6	TraesCS7B01G107700	chr7D	162114642	162116048	1406	False	783.05	1480	89.2840	503	1696	2	chr7D.!!$F3	1193
7	TraesCS7B01G107700	chr7D	162214614	162215126	512	False	640.00	640	89.5350	998	1501	1	chr7D.!!$F2	503
8	TraesCS7B01G107700	chr7D	162201373	162201960	587	False	628.00	628	86.3790	980	1563	1	chr7D.!!$F1	583
9	TraesCS7B01G107700	chr7A	163229278	163230499	1221	False	1441.00	1441	88.2920	503	1717	1	chr7A.!!$F1	1214
10	TraesCS7B01G107700	chr7A	547149252	547149930	678	True	959.00	959	92.2290	1746	2423	1	chr7A.!!$R2	677
11	TraesCS7B01G107700	chr7A	211723222	211723900	678	True	952.00	952	91.9470	1743	2423	1	chr7A.!!$R1	680
12	TraesCS7B01G107700	chr7A	163353203	163353703	500	False	662.00	662	90.4760	998	1501	1	chr7A.!!$F2	503
13	TraesCS7B01G107700	chr7A	163360995	163361532	537	False	606.00	606	87.6380	985	1505	1	chr7A.!!$F3	520
14	TraesCS7B01G107700	chr6B	259072517	259073194	677	True	1114.00	1114	96.3180	1746	2423	1	chr6B.!!$R1	677
15	TraesCS7B01G107700	chr4D	355817804	355818481	677	True	992.00	992	93.0980	1745	2423	1	chr4D.!!$R2	678
16	TraesCS7B01G107700	chr4D	313884411	313885089	678	True	989.00	989	92.9620	1744	2423	1	chr4D.!!$R1	679
17	TraesCS7B01G107700	chr2D	568248405	568249082	677	True	981.00	981	92.8050	1742	2420	1	chr2D.!!$R1	678
18	TraesCS7B01G107700	chr3A	33139895	33140571	676	False	963.00	963	92.3530	1746	2423	1	chr3A.!!$F1	677
19	TraesCS7B01G107700	chr6D	451769952	451770619	667	True	944.00	944	92.0590	1746	2423	1	chr6D.!!$R1	677
20	TraesCS7B01G107700	chr5B	636980374	636980879	505	False	760.00	760	93.8980	1	503	1	chr5B.!!$F1	502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
584	597	0.034059	ATTTGCGCCTCCTCTATCGG	59.966	55.0	4.18	0.0	0.0	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1704	2075	1.336795	TGGTGTCTATCTGCACACACG	60.337	52.381	5.39	0.0	44.07	4.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	5.185635	TCAATCCATAAACTGCCTTTTCCAG	59.814	40.000	0.00	0.00	36.41	3.86
30	31	2.562298	CCATAAACTGCCTTTTCCAGCA	59.438	45.455	0.00	0.00	37.46	4.41
36	37	0.478072	TGCCTTTTCCAGCAGGAGAA	59.522	50.000	0.00	0.00	46.74	2.87
43	44	0.979665	TCCAGCAGGAGAAGGAAGTG	59.020	55.000	0.00	0.00	39.61	3.16
65	66	6.205853	AGTGTAAGTGCGAACATTATTTTCCA	59.794	34.615	0.00	0.00	0.00	3.53
89	90	2.220653	ATGGGTAGCAAAGCATGTGT	57.779	45.000	0.00	0.00	0.00	3.72
393	398	3.405170	GTGACACTTGGTTTCACTGTG	57.595	47.619	0.17	0.17	39.33	3.66
418	423	6.879458	GGTGTTGTTATAGAAGACAATGACCT	59.121	38.462	10.62	0.00	37.73	3.85
454	460	7.067494	GGTTGAGTCATGCTTATTGAATTAGGT	59.933	37.037	0.00	0.00	0.00	3.08
455	461	7.792374	TGAGTCATGCTTATTGAATTAGGTC	57.208	36.000	0.00	0.00	0.00	3.85
457	463	7.828717	TGAGTCATGCTTATTGAATTAGGTCAA	59.171	33.333	0.00	0.00	41.59	3.18
462	468	7.936496	TGCTTATTGAATTAGGTCAATGTGA	57.064	32.000	10.02	0.00	45.62	3.58
463	469	8.347004	TGCTTATTGAATTAGGTCAATGTGAA	57.653	30.769	10.02	0.00	45.62	3.18
464	470	8.970020	TGCTTATTGAATTAGGTCAATGTGAAT	58.030	29.630	10.02	0.00	45.62	2.57
510	516	9.391006	CAAGGGCATGTTTTCTAGTATTACTTA	57.609	33.333	0.85	0.00	0.00	2.24
568	575	4.481072	ACCCTCCTACGCTAGATACATTT	58.519	43.478	0.00	0.00	0.00	2.32
576	589	1.801178	GCTAGATACATTTGCGCCTCC	59.199	52.381	4.18	0.00	0.00	4.30
584	597	0.034059	ATTTGCGCCTCCTCTATCGG	59.966	55.000	4.18	0.00	0.00	4.18
656	673	0.459078	TTCTGATCTCTCTGCCTGCG	59.541	55.000	0.00	0.00	0.00	5.18
671	688	1.225376	CTGCGGCCGAGTAAACAACA	61.225	55.000	33.48	13.03	0.00	3.33
682	699	1.328374	GTAAACAACAGAACGTGCGGT	59.672	47.619	0.00	0.00	0.00	5.68
692	709	1.063764	GAACGTGCGGTACTAGAGGAG	59.936	57.143	0.00	0.00	0.00	3.69
759	780	2.596338	TCCGTCGACCAGCTCACA	60.596	61.111	10.58	0.00	0.00	3.58
798	826	1.065854	CAGAGACGGCCAGGAAGAAAT	60.066	52.381	2.24	0.00	0.00	2.17
810	840	1.092348	GAAGAAATACCCCACCACGC	58.908	55.000	0.00	0.00	0.00	5.34
837	876	1.237285	ATTCGACAGCAACAGCCCAC	61.237	55.000	0.00	0.00	0.00	4.61
838	877	2.591429	CGACAGCAACAGCCCACA	60.591	61.111	0.00	0.00	0.00	4.17
839	878	2.610694	CGACAGCAACAGCCCACAG	61.611	63.158	0.00	0.00	0.00	3.66
840	879	2.203394	ACAGCAACAGCCCACAGG	60.203	61.111	0.00	0.00	0.00	4.00
841	880	2.113774	CAGCAACAGCCCACAGGA	59.886	61.111	0.00	0.00	33.47	3.86
842	881	1.970114	CAGCAACAGCCCACAGGAG	60.970	63.158	0.00	0.00	33.47	3.69
843	882	2.149383	AGCAACAGCCCACAGGAGA	61.149	57.895	0.00	0.00	33.47	3.71
884	942	7.619302	TCCTATAAAGCAAACCCATCAATTTCT	59.381	33.333	0.00	0.00	0.00	2.52
888	946	5.813513	AGCAAACCCATCAATTTCTTTCT	57.186	34.783	0.00	0.00	0.00	2.52
892	950	6.073058	GCAAACCCATCAATTTCTTTCTTTCC	60.073	38.462	0.00	0.00	0.00	3.13
893	951	7.219322	CAAACCCATCAATTTCTTTCTTTCCT	58.781	34.615	0.00	0.00	0.00	3.36
936	1011	2.743718	CTCCCCACTGCGACACTT	59.256	61.111	0.00	0.00	0.00	3.16
954	1029	0.608130	TTCAAGCTCGCTAGGCTTCA	59.392	50.000	0.00	0.00	46.59	3.02
1449	1594	1.763968	TCATGCGTGGTAGAGTAGCT	58.236	50.000	5.98	0.00	0.00	3.32
1456	1630	3.242804	GCGTGGTAGAGTAGCTTGAGTAG	60.243	52.174	0.00	0.00	0.00	2.57
1704	2075	1.477014	GCTACTATTCCCCACTTGGCC	60.477	57.143	0.00	0.00	0.00	5.36
1710	2081	4.579384	CCCCACTTGGCCGTGTGT	62.579	66.667	21.39	5.71	33.07	3.72
1717	2088	0.673333	CTTGGCCGTGTGTGCAGATA	60.673	55.000	0.00	0.00	0.00	1.98
1718	2089	0.673333	TTGGCCGTGTGTGCAGATAG	60.673	55.000	0.00	0.00	0.00	2.08
1719	2090	1.218047	GGCCGTGTGTGCAGATAGA	59.782	57.895	0.00	0.00	0.00	1.98
1720	2091	1.084370	GGCCGTGTGTGCAGATAGAC	61.084	60.000	0.00	0.00	0.00	2.59
1721	2092	0.389817	GCCGTGTGTGCAGATAGACA	60.390	55.000	0.00	0.00	0.00	3.41
1722	2093	1.350193	CCGTGTGTGCAGATAGACAC	58.650	55.000	0.00	0.00	42.40	3.67
1723	2094	1.350193	CGTGTGTGCAGATAGACACC	58.650	55.000	0.00	0.00	40.57	4.16
1724	2095	1.336795	CGTGTGTGCAGATAGACACCA	60.337	52.381	0.00	0.00	40.57	4.17
1725	2096	2.675032	CGTGTGTGCAGATAGACACCAT	60.675	50.000	0.00	0.00	40.57	3.55
1726	2097	2.674852	GTGTGTGCAGATAGACACCATG	59.325	50.000	0.00	0.00	41.55	3.66
1727	2098	1.667724	GTGTGCAGATAGACACCATGC	59.332	52.381	0.00	0.00	37.15	4.06
1728	2099	1.556451	TGTGCAGATAGACACCATGCT	59.444	47.619	0.00	0.00	37.76	3.79
1729	2100	2.765699	TGTGCAGATAGACACCATGCTA	59.234	45.455	0.00	0.00	37.76	3.49
1730	2101	3.181472	TGTGCAGATAGACACCATGCTAG	60.181	47.826	0.00	0.00	37.76	3.42
1731	2102	3.068732	GTGCAGATAGACACCATGCTAGA	59.931	47.826	0.00	0.00	37.76	2.43
1732	2103	3.320256	TGCAGATAGACACCATGCTAGAG	59.680	47.826	0.00	0.00	37.76	2.43
1733	2104	3.860378	GCAGATAGACACCATGCTAGAGC	60.860	52.174	0.00	0.00	42.50	4.09
1895	2266	7.050970	ACGTTGAATATGCTTACCAGAGATA	57.949	36.000	0.00	0.00	0.00	1.98
1970	2342	2.960384	TGTAGAAGAACCGAAGTGTCCA	59.040	45.455	0.00	0.00	0.00	4.02
2011	2387	9.730420	GTATAACCGATAACAAGAAAATGCAAT	57.270	29.630	0.00	0.00	0.00	3.56
2318	2697	6.279513	TCACGAAATAATTCATTTGGGCTT	57.720	33.333	0.00	0.00	36.96	4.35
2369	2748	5.447818	AGAATTTTTCTCCGCGAAGCTATTG	60.448	40.000	8.23	0.00	45.43	1.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	0.979665	CACTTCCTTCTCCTGCTGGA	59.020	55.000	12.29	12.29	40.69	3.86
28	29	3.330267	CACTTACACTTCCTTCTCCTGC	58.670	50.000	0.00	0.00	0.00	4.85
30	31	2.028930	CGCACTTACACTTCCTTCTCCT	60.029	50.000	0.00	0.00	0.00	3.69
36	37	2.902705	TGTTCGCACTTACACTTCCT	57.097	45.000	0.00	0.00	0.00	3.36
43	44	5.798434	GGTGGAAAATAATGTTCGCACTTAC	59.202	40.000	0.00	0.00	31.92	2.34
141	145	3.135895	CCGGTGTTGGGATCTACCTAAAT	59.864	47.826	0.00	0.00	40.69	1.40
147	151	0.611714	ACACCGGTGTTGGGATCTAC	59.388	55.000	34.41	0.00	41.83	2.59
297	301	8.451245	ACTCATTATCCACAATATTCTTGGGAT	58.549	33.333	11.25	10.63	38.58	3.85
351	356	6.994496	TCACTTCTTCTCACTCATGACAAAAT	59.006	34.615	0.00	0.00	0.00	1.82
393	398	6.879458	AGGTCATTGTCTTCTATAACAACACC	59.121	38.462	8.92	8.92	39.65	4.16
418	423	0.105194	TGACTCAACCCCCTCTCACA	60.105	55.000	0.00	0.00	0.00	3.58
454	460	7.439356	TGCAACGGAAAAATAAATTCACATTGA	59.561	29.630	0.00	0.00	0.00	2.57
455	461	7.571026	TGCAACGGAAAAATAAATTCACATTG	58.429	30.769	0.00	0.00	0.00	2.82
457	463	7.571892	GTTGCAACGGAAAAATAAATTCACAT	58.428	30.769	14.90	0.00	0.00	3.21
486	492	9.969001	TTTAAGTAATACTAGAAAACATGCCCT	57.031	29.630	0.00	0.00	0.00	5.19
547	554	4.810790	CAAATGTATCTAGCGTAGGAGGG	58.189	47.826	0.00	0.00	0.00	4.30
558	565	2.965831	AGAGGAGGCGCAAATGTATCTA	59.034	45.455	10.83	0.00	0.00	1.98
559	566	1.765314	AGAGGAGGCGCAAATGTATCT	59.235	47.619	10.83	0.00	0.00	1.98
568	575	2.123854	ACCGATAGAGGAGGCGCA	60.124	61.111	10.83	0.00	39.76	6.09
571	578	2.042800	GGTCACCGATAGAGGAGGC	58.957	63.158	0.00	0.00	39.76	4.70
656	673	1.193874	CGTTCTGTTGTTTACTCGGCC	59.806	52.381	0.00	0.00	0.00	6.13
671	688	1.093159	CCTCTAGTACCGCACGTTCT	58.907	55.000	0.00	0.00	0.00	3.01
682	699	2.091994	GGTGGCTGGTACTCCTCTAGTA	60.092	54.545	0.00	0.00	39.80	1.82
692	709	0.533308	TTCAACGTGGTGGCTGGTAC	60.533	55.000	0.00	0.00	0.00	3.34
837	876	2.125753	GCAGCGTGTCCTCTCCTG	60.126	66.667	0.00	0.00	0.00	3.86
838	877	3.753434	CGCAGCGTGTCCTCTCCT	61.753	66.667	6.65	0.00	0.00	3.69
839	878	2.564553	AATCGCAGCGTGTCCTCTCC	62.565	60.000	15.93	0.00	0.00	3.71
840	879	1.142778	GAATCGCAGCGTGTCCTCTC	61.143	60.000	15.93	0.00	0.00	3.20
841	880	1.153745	GAATCGCAGCGTGTCCTCT	60.154	57.895	15.93	0.00	0.00	3.69
842	881	2.167861	GGAATCGCAGCGTGTCCTC	61.168	63.158	23.94	11.92	31.78	3.71
843	882	1.320344	TAGGAATCGCAGCGTGTCCT	61.320	55.000	31.29	31.29	41.33	3.85
884	942	2.373836	TGATCGGGTTGGAGGAAAGAAA	59.626	45.455	0.00	0.00	0.00	2.52
888	946	1.613255	GCTTGATCGGGTTGGAGGAAA	60.613	52.381	0.00	0.00	0.00	3.13
892	950	0.250234	TCTGCTTGATCGGGTTGGAG	59.750	55.000	0.00	0.00	0.00	3.86
893	951	0.250234	CTCTGCTTGATCGGGTTGGA	59.750	55.000	0.00	0.00	0.00	3.53
933	1008	2.281830	AGCCTAGCGAGCTTGAAGT	58.718	52.632	4.70	0.00	37.24	3.01
954	1029	1.313812	CGGTCTCCCTGTACGCTCTT	61.314	60.000	0.00	0.00	0.00	2.85
1384	1512	2.047560	GTTACAGGAGGCCGCGTT	60.048	61.111	4.92	0.00	0.00	4.84
1449	1594	4.877378	ACATGGACCGTAAACTACTCAA	57.123	40.909	0.00	0.00	0.00	3.02
1456	1630	5.387279	CACACATTTACATGGACCGTAAAC	58.613	41.667	6.81	0.00	40.57	2.01
1631	2001	3.580895	GGATTGCTTTTAACCCTCCCAAA	59.419	43.478	0.00	0.00	0.00	3.28
1632	2002	3.169908	GGATTGCTTTTAACCCTCCCAA	58.830	45.455	0.00	0.00	0.00	4.12
1633	2003	2.110899	TGGATTGCTTTTAACCCTCCCA	59.889	45.455	0.00	0.00	0.00	4.37
1647	2017	2.231964	TGAAGCAAAGACCATGGATTGC	59.768	45.455	30.04	30.04	46.43	3.56
1704	2075	1.336795	TGGTGTCTATCTGCACACACG	60.337	52.381	5.39	0.00	44.07	4.49
1710	2081	3.299503	TCTAGCATGGTGTCTATCTGCA	58.700	45.455	7.89	0.00	35.32	4.41
1726	2097	6.519213	GCCCCTGGTTATATATATGCTCTAGC	60.519	46.154	5.44	0.00	42.50	3.42
1727	2098	6.294787	CGCCCCTGGTTATATATATGCTCTAG	60.295	46.154	5.44	3.57	0.00	2.43
1728	2099	5.538813	CGCCCCTGGTTATATATATGCTCTA	59.461	44.000	5.44	0.00	0.00	2.43
1729	2100	4.345257	CGCCCCTGGTTATATATATGCTCT	59.655	45.833	5.44	0.00	0.00	4.09
1730	2101	4.503296	CCGCCCCTGGTTATATATATGCTC	60.503	50.000	5.44	0.00	0.00	4.26
1731	2102	3.391296	CCGCCCCTGGTTATATATATGCT	59.609	47.826	5.44	0.00	0.00	3.79
1732	2103	3.389983	TCCGCCCCTGGTTATATATATGC	59.610	47.826	5.44	0.00	0.00	3.14
1733	2104	4.202326	GGTCCGCCCCTGGTTATATATATG	60.202	50.000	5.44	0.00	0.00	1.78
1734	2105	3.971971	GGTCCGCCCCTGGTTATATATAT	59.028	47.826	0.00	0.00	0.00	0.86
1735	2106	3.377573	GGTCCGCCCCTGGTTATATATA	58.622	50.000	0.00	0.00	0.00	0.86
1736	2107	2.193993	GGTCCGCCCCTGGTTATATAT	58.806	52.381	0.00	0.00	0.00	0.86
1737	2108	1.648116	GGTCCGCCCCTGGTTATATA	58.352	55.000	0.00	0.00	0.00	0.86
1738	2109	2.460027	GGTCCGCCCCTGGTTATAT	58.540	57.895	0.00	0.00	0.00	0.86
1739	2110	3.975025	GGTCCGCCCCTGGTTATA	58.025	61.111	0.00	0.00	0.00	0.98
1926	2298	7.318141	ACAATGTTCAATTTCCTGCTATCAAG	58.682	34.615	0.00	0.00	0.00	3.02
2011	2387	8.704668	TGATTTGTAGGCAATCAAGATCTAGTA	58.295	33.333	0.00	0.00	34.18	1.82
2077	2453	6.588204	TGGTTTATCGGACTTACTATTGCAT	58.412	36.000	0.00	0.00	0.00	3.96
2085	2461	4.476628	TCCCTTGGTTTATCGGACTTAC	57.523	45.455	0.00	0.00	0.00	2.34
2266	2644	6.674694	ACATAGTGCATTTGATGAGTCTTC	57.325	37.500	0.00	0.00	0.00	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.