Multiple sequence alignment - TraesCS7B01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G107000 chr7B 100.000 3454 0 0 1 3454 123774590 123771137 0.000000e+00 6379.0
1 TraesCS7B01G107000 chr7B 98.075 3117 45 3 338 3454 450591817 450594918 0.000000e+00 5409.0
2 TraesCS7B01G107000 chr7B 97.818 3117 49 2 338 3454 485468510 485465413 0.000000e+00 5361.0
3 TraesCS7B01G107000 chr7B 96.218 2459 92 1 997 3454 152476325 152478783 0.000000e+00 4024.0
4 TraesCS7B01G107000 chr7B 95.575 339 13 1 1 337 615265282 615264944 3.030000e-150 542.0
5 TraesCS7B01G107000 chr7B 96.584 322 9 1 1 320 716355831 716355510 1.820000e-147 532.0
6 TraesCS7B01G107000 chr7B 96.875 32 1 0 925 956 348951053 348951084 2.000000e-03 54.7
7 TraesCS7B01G107000 chr4A 97.754 3117 51 6 338 3454 705708158 705711255 0.000000e+00 5350.0
8 TraesCS7B01G107000 chr4A 97.345 339 7 1 1 337 76718653 76718991 2.990000e-160 575.0
9 TraesCS7B01G107000 chr2B 97.660 3120 41 13 338 3454 338741404 338744494 0.000000e+00 5328.0
10 TraesCS7B01G107000 chr2B 96.221 2461 92 1 995 3454 309476630 309479090 0.000000e+00 4028.0
11 TraesCS7B01G107000 chr2B 96.755 339 9 1 1 337 568855482 568855820 6.470000e-157 564.0
12 TraesCS7B01G107000 chr2B 96.000 275 8 3 338 610 712763515 712763788 8.800000e-121 444.0
13 TraesCS7B01G107000 chr3B 97.345 3126 53 14 338 3454 141746090 141749194 0.000000e+00 5286.0
14 TraesCS7B01G107000 chr3B 94.395 339 14 3 1 337 828398359 828398024 1.840000e-142 516.0
15 TraesCS7B01G107000 chr5B 97.242 3118 64 4 337 3454 560429440 560432535 0.000000e+00 5262.0
16 TraesCS7B01G107000 chr2A 97.621 2900 64 5 338 3233 448506765 448503867 0.000000e+00 4968.0
17 TraesCS7B01G107000 chr2A 90.889 461 21 4 338 797 116443084 116442644 1.770000e-167 599.0
18 TraesCS7B01G107000 chr1A 96.260 2460 92 0 995 3454 440450176 440452635 0.000000e+00 4034.0
19 TraesCS7B01G107000 chrUn 96.755 339 9 1 1 337 301888124 301887786 6.470000e-157 564.0
20 TraesCS7B01G107000 chr5A 96.460 339 10 1 1 337 565664337 565664675 3.010000e-155 558.0
21 TraesCS7B01G107000 chr7A 95.846 337 14 0 1 337 309669953 309670289 2.340000e-151 545.0
22 TraesCS7B01G107000 chr3D 89.408 321 32 1 3 321 49438097 49437777 1.490000e-108 403.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G107000 chr7B 123771137 123774590 3453 True 6379 6379 100.000 1 3454 1 chr7B.!!$R1 3453
1 TraesCS7B01G107000 chr7B 450591817 450594918 3101 False 5409 5409 98.075 338 3454 1 chr7B.!!$F3 3116
2 TraesCS7B01G107000 chr7B 485465413 485468510 3097 True 5361 5361 97.818 338 3454 1 chr7B.!!$R2 3116
3 TraesCS7B01G107000 chr7B 152476325 152478783 2458 False 4024 4024 96.218 997 3454 1 chr7B.!!$F1 2457
4 TraesCS7B01G107000 chr4A 705708158 705711255 3097 False 5350 5350 97.754 338 3454 1 chr4A.!!$F2 3116
5 TraesCS7B01G107000 chr2B 338741404 338744494 3090 False 5328 5328 97.660 338 3454 1 chr2B.!!$F2 3116
6 TraesCS7B01G107000 chr2B 309476630 309479090 2460 False 4028 4028 96.221 995 3454 1 chr2B.!!$F1 2459
7 TraesCS7B01G107000 chr3B 141746090 141749194 3104 False 5286 5286 97.345 338 3454 1 chr3B.!!$F1 3116
8 TraesCS7B01G107000 chr5B 560429440 560432535 3095 False 5262 5262 97.242 337 3454 1 chr5B.!!$F1 3117
9 TraesCS7B01G107000 chr2A 448503867 448506765 2898 True 4968 4968 97.621 338 3233 1 chr2A.!!$R2 2895
10 TraesCS7B01G107000 chr1A 440450176 440452635 2459 False 4034 4034 96.260 995 3454 1 chr1A.!!$F1 2459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 946 0.034059 GTGGTCAGTGCTACTGCTGT 59.966 55.0 10.36 0.66 45.54 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 2533 0.321564 CTTGTCCTCCATGGTCGCAA 60.322 55.0 12.58 11.66 37.07 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.251750 TGTATTTTCCATTACTTTCTCGAGTG 57.748 34.615 13.13 6.80 0.00 3.51
26 27 8.092068 TGTATTTTCCATTACTTTCTCGAGTGA 58.908 33.333 13.13 0.00 0.00 3.41
27 28 6.780706 TTTTCCATTACTTTCTCGAGTGAC 57.219 37.500 13.13 0.00 0.00 3.67
28 29 5.462530 TTCCATTACTTTCTCGAGTGACA 57.537 39.130 13.13 0.00 0.00 3.58
29 30 5.661056 TCCATTACTTTCTCGAGTGACAT 57.339 39.130 13.13 0.00 0.00 3.06
30 31 6.769134 TCCATTACTTTCTCGAGTGACATA 57.231 37.500 13.13 0.00 0.00 2.29
31 32 7.348080 TCCATTACTTTCTCGAGTGACATAT 57.652 36.000 13.13 0.00 0.00 1.78
32 33 8.459911 TCCATTACTTTCTCGAGTGACATATA 57.540 34.615 13.13 0.00 0.00 0.86
33 34 9.078990 TCCATTACTTTCTCGAGTGACATATAT 57.921 33.333 13.13 0.00 0.00 0.86
37 38 9.894783 TTACTTTCTCGAGTGACATATATAAGC 57.105 33.333 13.13 0.00 0.00 3.09
38 39 8.172352 ACTTTCTCGAGTGACATATATAAGCT 57.828 34.615 13.13 0.00 0.00 3.74
39 40 8.634444 ACTTTCTCGAGTGACATATATAAGCTT 58.366 33.333 13.13 3.48 0.00 3.74
40 41 9.123709 CTTTCTCGAGTGACATATATAAGCTTC 57.876 37.037 13.13 0.00 0.00 3.86
41 42 7.745620 TCTCGAGTGACATATATAAGCTTCA 57.254 36.000 13.13 0.00 0.00 3.02
42 43 7.585867 TCTCGAGTGACATATATAAGCTTCAC 58.414 38.462 13.13 2.01 34.78 3.18
43 44 7.228706 TCTCGAGTGACATATATAAGCTTCACA 59.771 37.037 13.13 0.00 36.61 3.58
44 45 7.886338 TCGAGTGACATATATAAGCTTCACAT 58.114 34.615 0.00 0.00 36.61 3.21
45 46 8.023706 TCGAGTGACATATATAAGCTTCACATC 58.976 37.037 0.00 1.93 36.61 3.06
46 47 7.274468 CGAGTGACATATATAAGCTTCACATCC 59.726 40.741 0.00 0.00 36.61 3.51
47 48 7.966812 AGTGACATATATAAGCTTCACATCCA 58.033 34.615 0.00 0.00 36.61 3.41
48 49 7.875041 AGTGACATATATAAGCTTCACATCCAC 59.125 37.037 0.00 3.64 36.61 4.02
49 50 7.657354 GTGACATATATAAGCTTCACATCCACA 59.343 37.037 0.00 0.00 34.71 4.17
50 51 8.377799 TGACATATATAAGCTTCACATCCACAT 58.622 33.333 0.00 0.00 0.00 3.21
51 52 8.783833 ACATATATAAGCTTCACATCCACATC 57.216 34.615 0.00 0.00 0.00 3.06
52 53 8.600668 ACATATATAAGCTTCACATCCACATCT 58.399 33.333 0.00 0.00 0.00 2.90
55 56 4.833478 AAGCTTCACATCCACATCTAGT 57.167 40.909 0.00 0.00 0.00 2.57
56 57 4.399004 AGCTTCACATCCACATCTAGTC 57.601 45.455 0.00 0.00 0.00 2.59
57 58 3.771479 AGCTTCACATCCACATCTAGTCA 59.229 43.478 0.00 0.00 0.00 3.41
58 59 4.223700 AGCTTCACATCCACATCTAGTCAA 59.776 41.667 0.00 0.00 0.00 3.18
59 60 5.104610 AGCTTCACATCCACATCTAGTCAAT 60.105 40.000 0.00 0.00 0.00 2.57
60 61 5.587844 GCTTCACATCCACATCTAGTCAATT 59.412 40.000 0.00 0.00 0.00 2.32
61 62 6.094603 GCTTCACATCCACATCTAGTCAATTT 59.905 38.462 0.00 0.00 0.00 1.82
62 63 7.280876 GCTTCACATCCACATCTAGTCAATTTA 59.719 37.037 0.00 0.00 0.00 1.40
63 64 9.166173 CTTCACATCCACATCTAGTCAATTTAA 57.834 33.333 0.00 0.00 0.00 1.52
64 65 8.492673 TCACATCCACATCTAGTCAATTTAAC 57.507 34.615 0.00 0.00 0.00 2.01
65 66 7.552687 TCACATCCACATCTAGTCAATTTAACC 59.447 37.037 0.00 0.00 0.00 2.85
66 67 7.554118 CACATCCACATCTAGTCAATTTAACCT 59.446 37.037 0.00 0.00 0.00 3.50
67 68 8.109634 ACATCCACATCTAGTCAATTTAACCTT 58.890 33.333 0.00 0.00 0.00 3.50
68 69 8.960591 CATCCACATCTAGTCAATTTAACCTTT 58.039 33.333 0.00 0.00 0.00 3.11
69 70 8.561738 TCCACATCTAGTCAATTTAACCTTTC 57.438 34.615 0.00 0.00 0.00 2.62
70 71 8.383175 TCCACATCTAGTCAATTTAACCTTTCT 58.617 33.333 0.00 0.00 0.00 2.52
71 72 8.669243 CCACATCTAGTCAATTTAACCTTTCTC 58.331 37.037 0.00 0.00 0.00 2.87
72 73 8.669243 CACATCTAGTCAATTTAACCTTTCTCC 58.331 37.037 0.00 0.00 0.00 3.71
73 74 8.606830 ACATCTAGTCAATTTAACCTTTCTCCT 58.393 33.333 0.00 0.00 0.00 3.69
74 75 9.454859 CATCTAGTCAATTTAACCTTTCTCCTT 57.545 33.333 0.00 0.00 0.00 3.36
76 77 9.862149 TCTAGTCAATTTAACCTTTCTCCTTTT 57.138 29.630 0.00 0.00 0.00 2.27
78 79 8.768501 AGTCAATTTAACCTTTCTCCTTTTCT 57.231 30.769 0.00 0.00 0.00 2.52
79 80 9.201989 AGTCAATTTAACCTTTCTCCTTTTCTT 57.798 29.630 0.00 0.00 0.00 2.52
80 81 9.817809 GTCAATTTAACCTTTCTCCTTTTCTTT 57.182 29.630 0.00 0.00 0.00 2.52
81 82 9.816354 TCAATTTAACCTTTCTCCTTTTCTTTG 57.184 29.630 0.00 0.00 0.00 2.77
82 83 9.816354 CAATTTAACCTTTCTCCTTTTCTTTGA 57.184 29.630 0.00 0.00 0.00 2.69
85 86 5.521906 ACCTTTCTCCTTTTCTTTGAAGC 57.478 39.130 0.00 0.00 0.00 3.86
86 87 4.342378 ACCTTTCTCCTTTTCTTTGAAGCC 59.658 41.667 0.00 0.00 0.00 4.35
87 88 4.586421 CCTTTCTCCTTTTCTTTGAAGCCT 59.414 41.667 0.00 0.00 0.00 4.58
88 89 5.278709 CCTTTCTCCTTTTCTTTGAAGCCTC 60.279 44.000 0.00 0.00 0.00 4.70
89 90 4.437682 TCTCCTTTTCTTTGAAGCCTCA 57.562 40.909 0.00 0.00 0.00 3.86
90 91 4.792068 TCTCCTTTTCTTTGAAGCCTCAA 58.208 39.130 0.00 0.00 39.87 3.02
91 92 4.580580 TCTCCTTTTCTTTGAAGCCTCAAC 59.419 41.667 0.00 0.00 41.34 3.18
92 93 4.277476 TCCTTTTCTTTGAAGCCTCAACA 58.723 39.130 0.00 0.00 41.34 3.33
93 94 4.709397 TCCTTTTCTTTGAAGCCTCAACAA 59.291 37.500 0.00 0.00 41.34 2.83
94 95 4.805719 CCTTTTCTTTGAAGCCTCAACAAC 59.194 41.667 0.00 0.00 41.34 3.32
95 96 5.398603 TTTTCTTTGAAGCCTCAACAACA 57.601 34.783 0.00 0.00 41.34 3.33
96 97 5.398603 TTTCTTTGAAGCCTCAACAACAA 57.601 34.783 0.00 0.00 41.34 2.83
97 98 4.370364 TCTTTGAAGCCTCAACAACAAC 57.630 40.909 0.00 0.00 41.34 3.32
98 99 3.130340 TCTTTGAAGCCTCAACAACAACC 59.870 43.478 0.00 0.00 41.34 3.77
99 100 2.136298 TGAAGCCTCAACAACAACCA 57.864 45.000 0.00 0.00 0.00 3.67
100 101 2.665165 TGAAGCCTCAACAACAACCAT 58.335 42.857 0.00 0.00 0.00 3.55
101 102 3.826524 TGAAGCCTCAACAACAACCATA 58.173 40.909 0.00 0.00 0.00 2.74
102 103 3.568007 TGAAGCCTCAACAACAACCATAC 59.432 43.478 0.00 0.00 0.00 2.39
103 104 2.514803 AGCCTCAACAACAACCATACC 58.485 47.619 0.00 0.00 0.00 2.73
104 105 2.108250 AGCCTCAACAACAACCATACCT 59.892 45.455 0.00 0.00 0.00 3.08
105 106 2.890945 GCCTCAACAACAACCATACCTT 59.109 45.455 0.00 0.00 0.00 3.50
106 107 3.320826 GCCTCAACAACAACCATACCTTT 59.679 43.478 0.00 0.00 0.00 3.11
107 108 4.558697 GCCTCAACAACAACCATACCTTTC 60.559 45.833 0.00 0.00 0.00 2.62
108 109 4.827284 CCTCAACAACAACCATACCTTTCT 59.173 41.667 0.00 0.00 0.00 2.52
109 110 5.048713 CCTCAACAACAACCATACCTTTCTC 60.049 44.000 0.00 0.00 0.00 2.87
110 111 4.513692 TCAACAACAACCATACCTTTCTCG 59.486 41.667 0.00 0.00 0.00 4.04
111 112 3.408634 ACAACAACCATACCTTTCTCGG 58.591 45.455 0.00 0.00 0.00 4.63
112 113 2.747446 CAACAACCATACCTTTCTCGGG 59.253 50.000 0.00 0.00 0.00 5.14
113 114 2.262637 ACAACCATACCTTTCTCGGGA 58.737 47.619 0.00 0.00 0.00 5.14
114 115 2.027469 ACAACCATACCTTTCTCGGGAC 60.027 50.000 0.00 0.00 0.00 4.46
128 129 3.341263 GGGACGGAAGCCTTCTTTT 57.659 52.632 4.15 0.00 31.48 2.27
129 130 0.881796 GGGACGGAAGCCTTCTTTTG 59.118 55.000 4.15 0.00 31.48 2.44
130 131 0.241213 GGACGGAAGCCTTCTTTTGC 59.759 55.000 4.15 0.00 31.48 3.68
131 132 0.951558 GACGGAAGCCTTCTTTTGCA 59.048 50.000 4.15 0.00 31.48 4.08
132 133 0.668535 ACGGAAGCCTTCTTTTGCAC 59.331 50.000 4.15 0.00 31.48 4.57
133 134 0.667993 CGGAAGCCTTCTTTTGCACA 59.332 50.000 4.15 0.00 31.48 4.57
134 135 1.600413 CGGAAGCCTTCTTTTGCACAC 60.600 52.381 4.15 0.00 31.48 3.82
135 136 1.408702 GGAAGCCTTCTTTTGCACACA 59.591 47.619 4.15 0.00 31.48 3.72
136 137 2.544486 GGAAGCCTTCTTTTGCACACAG 60.544 50.000 4.15 0.00 31.48 3.66
137 138 1.035139 AGCCTTCTTTTGCACACAGG 58.965 50.000 0.00 0.00 0.00 4.00
138 139 1.032014 GCCTTCTTTTGCACACAGGA 58.968 50.000 0.00 0.00 0.00 3.86
139 140 1.408702 GCCTTCTTTTGCACACAGGAA 59.591 47.619 0.00 0.00 0.00 3.36
140 141 2.036346 GCCTTCTTTTGCACACAGGAAT 59.964 45.455 0.00 0.00 0.00 3.01
141 142 3.858503 GCCTTCTTTTGCACACAGGAATC 60.859 47.826 0.00 0.00 0.00 2.52
142 143 3.558505 CTTCTTTTGCACACAGGAATCG 58.441 45.455 0.00 0.00 0.00 3.34
143 144 2.571212 TCTTTTGCACACAGGAATCGT 58.429 42.857 0.00 0.00 0.00 3.73
144 145 2.948979 TCTTTTGCACACAGGAATCGTT 59.051 40.909 0.00 0.00 0.00 3.85
145 146 3.380004 TCTTTTGCACACAGGAATCGTTT 59.620 39.130 0.00 0.00 0.00 3.60
146 147 3.347958 TTTGCACACAGGAATCGTTTC 57.652 42.857 0.00 0.00 0.00 2.78
158 159 4.159377 GAATCGTTTCCATTGAAGCACA 57.841 40.909 0.00 0.00 31.75 4.57
159 160 4.737054 GAATCGTTTCCATTGAAGCACAT 58.263 39.130 0.00 0.00 31.75 3.21
160 161 4.789012 ATCGTTTCCATTGAAGCACATT 57.211 36.364 0.00 0.00 31.75 2.71
161 162 5.895636 ATCGTTTCCATTGAAGCACATTA 57.104 34.783 0.00 0.00 31.75 1.90
162 163 5.895636 TCGTTTCCATTGAAGCACATTAT 57.104 34.783 0.00 0.00 31.75 1.28
163 164 5.879237 TCGTTTCCATTGAAGCACATTATC 58.121 37.500 0.00 0.00 31.75 1.75
164 165 5.647658 TCGTTTCCATTGAAGCACATTATCT 59.352 36.000 0.00 0.00 31.75 1.98
165 166 6.821160 TCGTTTCCATTGAAGCACATTATCTA 59.179 34.615 0.00 0.00 31.75 1.98
166 167 6.907212 CGTTTCCATTGAAGCACATTATCTAC 59.093 38.462 0.00 0.00 31.75 2.59
167 168 6.603237 TTCCATTGAAGCACATTATCTACG 57.397 37.500 0.00 0.00 0.00 3.51
168 169 5.912892 TCCATTGAAGCACATTATCTACGA 58.087 37.500 0.00 0.00 0.00 3.43
169 170 5.753438 TCCATTGAAGCACATTATCTACGAC 59.247 40.000 0.00 0.00 0.00 4.34
170 171 5.050091 CCATTGAAGCACATTATCTACGACC 60.050 44.000 0.00 0.00 0.00 4.79
171 172 4.054780 TGAAGCACATTATCTACGACCC 57.945 45.455 0.00 0.00 0.00 4.46
172 173 3.704566 TGAAGCACATTATCTACGACCCT 59.295 43.478 0.00 0.00 0.00 4.34
173 174 4.202121 TGAAGCACATTATCTACGACCCTC 60.202 45.833 0.00 0.00 0.00 4.30
174 175 3.567397 AGCACATTATCTACGACCCTCT 58.433 45.455 0.00 0.00 0.00 3.69
175 176 3.319405 AGCACATTATCTACGACCCTCTG 59.681 47.826 0.00 0.00 0.00 3.35
176 177 3.068307 GCACATTATCTACGACCCTCTGT 59.932 47.826 0.00 0.00 0.00 3.41
177 178 4.441634 GCACATTATCTACGACCCTCTGTT 60.442 45.833 0.00 0.00 0.00 3.16
178 179 5.043903 CACATTATCTACGACCCTCTGTTG 58.956 45.833 0.00 0.00 0.00 3.33
179 180 4.710375 ACATTATCTACGACCCTCTGTTGT 59.290 41.667 0.00 0.00 44.12 3.32
180 181 4.978083 TTATCTACGACCCTCTGTTGTC 57.022 45.455 0.00 0.00 40.89 3.18
181 182 1.542492 TCTACGACCCTCTGTTGTCC 58.458 55.000 0.00 0.00 40.89 4.02
182 183 1.202964 TCTACGACCCTCTGTTGTCCA 60.203 52.381 0.00 0.00 40.89 4.02
183 184 1.616865 CTACGACCCTCTGTTGTCCAA 59.383 52.381 0.00 0.00 40.89 3.53
184 185 0.393077 ACGACCCTCTGTTGTCCAAG 59.607 55.000 0.00 0.00 36.89 3.61
185 186 0.679505 CGACCCTCTGTTGTCCAAGA 59.320 55.000 0.00 0.00 0.00 3.02
186 187 1.605712 CGACCCTCTGTTGTCCAAGAC 60.606 57.143 0.00 0.00 0.00 3.01
187 188 0.393077 ACCCTCTGTTGTCCAAGACG 59.607 55.000 0.00 0.00 34.95 4.18
188 189 0.951040 CCCTCTGTTGTCCAAGACGC 60.951 60.000 0.00 0.00 34.95 5.19
189 190 0.249868 CCTCTGTTGTCCAAGACGCA 60.250 55.000 0.00 0.00 34.95 5.24
190 191 0.861837 CTCTGTTGTCCAAGACGCAC 59.138 55.000 0.00 0.00 34.95 5.34
191 192 0.176910 TCTGTTGTCCAAGACGCACA 59.823 50.000 0.00 0.00 34.95 4.57
192 193 0.304705 CTGTTGTCCAAGACGCACAC 59.695 55.000 0.00 0.00 34.95 3.82
193 194 1.092921 TGTTGTCCAAGACGCACACC 61.093 55.000 0.00 0.00 34.95 4.16
194 195 1.092921 GTTGTCCAAGACGCACACCA 61.093 55.000 0.00 0.00 34.95 4.17
195 196 0.393132 TTGTCCAAGACGCACACCAA 60.393 50.000 0.00 0.00 34.95 3.67
196 197 0.393132 TGTCCAAGACGCACACCAAA 60.393 50.000 0.00 0.00 34.95 3.28
197 198 0.951558 GTCCAAGACGCACACCAAAT 59.048 50.000 0.00 0.00 0.00 2.32
198 199 1.336755 GTCCAAGACGCACACCAAATT 59.663 47.619 0.00 0.00 0.00 1.82
199 200 1.606668 TCCAAGACGCACACCAAATTC 59.393 47.619 0.00 0.00 0.00 2.17
200 201 1.662876 CCAAGACGCACACCAAATTCG 60.663 52.381 0.00 0.00 0.00 3.34
201 202 1.262950 CAAGACGCACACCAAATTCGA 59.737 47.619 0.00 0.00 0.00 3.71
202 203 0.865769 AGACGCACACCAAATTCGAC 59.134 50.000 0.00 0.00 0.00 4.20
203 204 0.584396 GACGCACACCAAATTCGACA 59.416 50.000 0.00 0.00 0.00 4.35
204 205 1.196808 GACGCACACCAAATTCGACAT 59.803 47.619 0.00 0.00 0.00 3.06
205 206 1.606668 ACGCACACCAAATTCGACATT 59.393 42.857 0.00 0.00 0.00 2.71
206 207 1.978097 CGCACACCAAATTCGACATTG 59.022 47.619 3.01 3.01 0.00 2.82
207 208 2.604373 CGCACACCAAATTCGACATTGT 60.604 45.455 8.17 0.00 0.00 2.71
208 209 2.725723 GCACACCAAATTCGACATTGTG 59.274 45.455 0.00 6.54 36.72 3.33
209 210 3.795150 GCACACCAAATTCGACATTGTGT 60.795 43.478 0.00 8.61 36.18 3.72
210 211 3.730215 CACACCAAATTCGACATTGTGTG 59.270 43.478 18.20 18.20 34.98 3.82
211 212 2.725723 CACCAAATTCGACATTGTGTGC 59.274 45.455 0.00 0.00 0.00 4.57
212 213 2.360483 ACCAAATTCGACATTGTGTGCA 59.640 40.909 0.00 0.00 0.00 4.57
213 214 3.005684 ACCAAATTCGACATTGTGTGCAT 59.994 39.130 0.00 0.00 0.00 3.96
214 215 4.217334 ACCAAATTCGACATTGTGTGCATA 59.783 37.500 0.00 0.00 0.00 3.14
215 216 5.105797 ACCAAATTCGACATTGTGTGCATAT 60.106 36.000 0.00 0.00 0.00 1.78
216 217 5.230516 CCAAATTCGACATTGTGTGCATATG 59.769 40.000 0.00 0.00 0.00 1.78
217 218 5.565592 AATTCGACATTGTGTGCATATGT 57.434 34.783 4.29 0.00 35.33 2.29
218 219 4.598406 TTCGACATTGTGTGCATATGTC 57.402 40.909 17.28 17.28 42.86 3.06
219 220 2.935849 TCGACATTGTGTGCATATGTCC 59.064 45.455 19.52 0.00 43.18 4.02
220 221 2.938451 CGACATTGTGTGCATATGTCCT 59.062 45.455 19.52 0.00 43.18 3.85
221 222 3.242511 CGACATTGTGTGCATATGTCCTG 60.243 47.826 19.52 9.65 43.18 3.86
222 223 3.689347 ACATTGTGTGCATATGTCCTGT 58.311 40.909 4.29 0.00 0.00 4.00
223 224 4.842574 ACATTGTGTGCATATGTCCTGTA 58.157 39.130 4.29 0.00 0.00 2.74
224 225 5.252547 ACATTGTGTGCATATGTCCTGTAA 58.747 37.500 4.29 0.00 0.00 2.41
225 226 5.709631 ACATTGTGTGCATATGTCCTGTAAA 59.290 36.000 4.29 0.00 0.00 2.01
226 227 6.208402 ACATTGTGTGCATATGTCCTGTAAAA 59.792 34.615 4.29 0.00 0.00 1.52
227 228 6.832520 TTGTGTGCATATGTCCTGTAAAAT 57.167 33.333 4.29 0.00 0.00 1.82
228 229 6.832520 TGTGTGCATATGTCCTGTAAAATT 57.167 33.333 4.29 0.00 0.00 1.82
229 230 6.851609 TGTGTGCATATGTCCTGTAAAATTC 58.148 36.000 4.29 0.00 0.00 2.17
230 231 6.127758 TGTGTGCATATGTCCTGTAAAATTCC 60.128 38.462 4.29 0.00 0.00 3.01
231 232 5.948758 TGTGCATATGTCCTGTAAAATTCCA 59.051 36.000 4.29 0.00 0.00 3.53
232 233 6.095300 TGTGCATATGTCCTGTAAAATTCCAG 59.905 38.462 4.29 0.00 0.00 3.86
233 234 5.067674 TGCATATGTCCTGTAAAATTCCAGC 59.932 40.000 4.29 0.00 0.00 4.85
234 235 5.067674 GCATATGTCCTGTAAAATTCCAGCA 59.932 40.000 4.29 0.00 0.00 4.41
235 236 6.498304 CATATGTCCTGTAAAATTCCAGCAC 58.502 40.000 0.00 0.00 0.00 4.40
236 237 3.153919 TGTCCTGTAAAATTCCAGCACC 58.846 45.455 0.00 0.00 0.00 5.01
237 238 3.153919 GTCCTGTAAAATTCCAGCACCA 58.846 45.455 0.00 0.00 0.00 4.17
238 239 3.572255 GTCCTGTAAAATTCCAGCACCAA 59.428 43.478 0.00 0.00 0.00 3.67
239 240 3.826157 TCCTGTAAAATTCCAGCACCAAG 59.174 43.478 0.00 0.00 0.00 3.61
240 241 3.056607 CCTGTAAAATTCCAGCACCAAGG 60.057 47.826 0.00 0.00 0.00 3.61
241 242 2.298729 TGTAAAATTCCAGCACCAAGGC 59.701 45.455 0.00 0.00 0.00 4.35
242 243 1.422531 AAAATTCCAGCACCAAGGCA 58.577 45.000 0.00 0.00 35.83 4.75
243 244 1.422531 AAATTCCAGCACCAAGGCAA 58.577 45.000 0.00 0.00 35.83 4.52
244 245 1.648116 AATTCCAGCACCAAGGCAAT 58.352 45.000 0.00 0.00 35.83 3.56
245 246 0.899720 ATTCCAGCACCAAGGCAATG 59.100 50.000 0.00 0.00 35.83 2.82
246 247 0.469705 TTCCAGCACCAAGGCAATGT 60.470 50.000 0.00 0.00 35.83 2.71
247 248 0.895100 TCCAGCACCAAGGCAATGTC 60.895 55.000 0.00 0.00 35.83 3.06
248 249 1.180456 CCAGCACCAAGGCAATGTCA 61.180 55.000 0.00 0.00 35.83 3.58
249 250 0.892755 CAGCACCAAGGCAATGTCAT 59.107 50.000 0.00 0.00 35.83 3.06
250 251 1.135199 CAGCACCAAGGCAATGTCATC 60.135 52.381 0.00 0.00 35.83 2.92
251 252 0.889994 GCACCAAGGCAATGTCATCA 59.110 50.000 0.00 0.00 0.00 3.07
252 253 1.273048 GCACCAAGGCAATGTCATCAA 59.727 47.619 0.00 0.00 0.00 2.57
253 254 2.288948 GCACCAAGGCAATGTCATCAAA 60.289 45.455 0.00 0.00 0.00 2.69
254 255 3.618019 GCACCAAGGCAATGTCATCAAAT 60.618 43.478 0.00 0.00 0.00 2.32
255 256 4.381825 GCACCAAGGCAATGTCATCAAATA 60.382 41.667 0.00 0.00 0.00 1.40
256 257 5.682990 GCACCAAGGCAATGTCATCAAATAT 60.683 40.000 0.00 0.00 0.00 1.28
257 258 5.981315 CACCAAGGCAATGTCATCAAATATC 59.019 40.000 0.00 0.00 0.00 1.63
258 259 5.657745 ACCAAGGCAATGTCATCAAATATCA 59.342 36.000 0.00 0.00 0.00 2.15
259 260 6.325545 ACCAAGGCAATGTCATCAAATATCAT 59.674 34.615 0.00 0.00 0.00 2.45
260 261 6.866770 CCAAGGCAATGTCATCAAATATCATC 59.133 38.462 0.00 0.00 0.00 2.92
261 262 6.585695 AGGCAATGTCATCAAATATCATCC 57.414 37.500 0.00 0.00 0.00 3.51
262 263 5.479375 AGGCAATGTCATCAAATATCATCCC 59.521 40.000 0.00 0.00 0.00 3.85
263 264 5.479375 GGCAATGTCATCAAATATCATCCCT 59.521 40.000 0.00 0.00 0.00 4.20
264 265 6.660521 GGCAATGTCATCAAATATCATCCCTA 59.339 38.462 0.00 0.00 0.00 3.53
265 266 7.362401 GGCAATGTCATCAAATATCATCCCTAC 60.362 40.741 0.00 0.00 0.00 3.18
266 267 7.392673 GCAATGTCATCAAATATCATCCCTACT 59.607 37.037 0.00 0.00 0.00 2.57
267 268 9.293404 CAATGTCATCAAATATCATCCCTACTT 57.707 33.333 0.00 0.00 0.00 2.24
268 269 9.872684 AATGTCATCAAATATCATCCCTACTTT 57.127 29.630 0.00 0.00 0.00 2.66
269 270 9.872684 ATGTCATCAAATATCATCCCTACTTTT 57.127 29.630 0.00 0.00 0.00 2.27
270 271 9.123902 TGTCATCAAATATCATCCCTACTTTTG 57.876 33.333 0.00 0.00 0.00 2.44
271 272 8.571336 GTCATCAAATATCATCCCTACTTTTGG 58.429 37.037 0.00 0.00 0.00 3.28
272 273 6.959639 TCAAATATCATCCCTACTTTTGGC 57.040 37.500 0.00 0.00 0.00 4.52
273 274 6.672593 TCAAATATCATCCCTACTTTTGGCT 58.327 36.000 0.00 0.00 0.00 4.75
274 275 7.125391 TCAAATATCATCCCTACTTTTGGCTT 58.875 34.615 0.00 0.00 0.00 4.35
275 276 7.285401 TCAAATATCATCCCTACTTTTGGCTTC 59.715 37.037 0.00 0.00 0.00 3.86
276 277 4.591321 ATCATCCCTACTTTTGGCTTCA 57.409 40.909 0.00 0.00 0.00 3.02
277 278 4.380843 TCATCCCTACTTTTGGCTTCAA 57.619 40.909 0.00 0.00 0.00 2.69
278 279 4.934356 TCATCCCTACTTTTGGCTTCAAT 58.066 39.130 0.00 0.00 0.00 2.57
279 280 5.332743 TCATCCCTACTTTTGGCTTCAATT 58.667 37.500 0.00 0.00 0.00 2.32
280 281 5.418840 TCATCCCTACTTTTGGCTTCAATTC 59.581 40.000 0.00 0.00 0.00 2.17
281 282 4.086457 TCCCTACTTTTGGCTTCAATTCC 58.914 43.478 0.00 0.00 0.00 3.01
282 283 4.089361 CCCTACTTTTGGCTTCAATTCCT 58.911 43.478 0.00 0.00 0.00 3.36
283 284 4.158579 CCCTACTTTTGGCTTCAATTCCTC 59.841 45.833 0.00 0.00 0.00 3.71
284 285 3.923017 ACTTTTGGCTTCAATTCCTCG 57.077 42.857 0.00 0.00 0.00 4.63
285 286 3.222603 ACTTTTGGCTTCAATTCCTCGT 58.777 40.909 0.00 0.00 0.00 4.18
286 287 3.253432 ACTTTTGGCTTCAATTCCTCGTC 59.747 43.478 0.00 0.00 0.00 4.20
287 288 2.559698 TTGGCTTCAATTCCTCGTCA 57.440 45.000 0.00 0.00 0.00 4.35
288 289 1.808411 TGGCTTCAATTCCTCGTCAC 58.192 50.000 0.00 0.00 0.00 3.67
289 290 1.071542 TGGCTTCAATTCCTCGTCACA 59.928 47.619 0.00 0.00 0.00 3.58
290 291 1.464997 GGCTTCAATTCCTCGTCACAC 59.535 52.381 0.00 0.00 0.00 3.82
291 292 2.417719 GCTTCAATTCCTCGTCACACT 58.582 47.619 0.00 0.00 0.00 3.55
292 293 2.158449 GCTTCAATTCCTCGTCACACTG 59.842 50.000 0.00 0.00 0.00 3.66
293 294 2.455674 TCAATTCCTCGTCACACTGG 57.544 50.000 0.00 0.00 0.00 4.00
294 295 1.001974 TCAATTCCTCGTCACACTGGG 59.998 52.381 0.00 0.00 0.00 4.45
295 296 0.324943 AATTCCTCGTCACACTGGGG 59.675 55.000 0.00 0.00 0.00 4.96
296 297 0.836400 ATTCCTCGTCACACTGGGGT 60.836 55.000 0.00 0.00 0.00 4.95
297 298 1.052124 TTCCTCGTCACACTGGGGTT 61.052 55.000 0.00 0.00 0.00 4.11
298 299 1.052124 TCCTCGTCACACTGGGGTTT 61.052 55.000 0.00 0.00 0.00 3.27
299 300 0.682852 CCTCGTCACACTGGGGTTTA 59.317 55.000 0.00 0.00 0.00 2.01
300 301 1.278127 CCTCGTCACACTGGGGTTTAT 59.722 52.381 0.00 0.00 0.00 1.40
301 302 2.498481 CCTCGTCACACTGGGGTTTATA 59.502 50.000 0.00 0.00 0.00 0.98
302 303 3.518590 CTCGTCACACTGGGGTTTATAC 58.481 50.000 0.00 0.00 0.00 1.47
303 304 2.898612 TCGTCACACTGGGGTTTATACA 59.101 45.455 0.00 0.00 0.00 2.29
304 305 3.324268 TCGTCACACTGGGGTTTATACAA 59.676 43.478 0.00 0.00 0.00 2.41
305 306 4.066490 CGTCACACTGGGGTTTATACAAA 58.934 43.478 0.00 0.00 0.00 2.83
306 307 4.153475 CGTCACACTGGGGTTTATACAAAG 59.847 45.833 0.00 0.00 0.00 2.77
307 308 5.310451 GTCACACTGGGGTTTATACAAAGA 58.690 41.667 0.00 0.00 0.00 2.52
308 309 5.766174 GTCACACTGGGGTTTATACAAAGAA 59.234 40.000 0.00 0.00 0.00 2.52
309 310 5.766174 TCACACTGGGGTTTATACAAAGAAC 59.234 40.000 0.00 0.00 0.00 3.01
310 311 5.048294 CACACTGGGGTTTATACAAAGAACC 60.048 44.000 0.00 0.00 41.60 3.62
316 317 5.715434 GGTTTATACAAAGAACCCTGCAA 57.285 39.130 0.00 0.00 37.45 4.08
317 318 5.466819 GGTTTATACAAAGAACCCTGCAAC 58.533 41.667 0.00 0.00 37.45 4.17
318 319 5.010213 GGTTTATACAAAGAACCCTGCAACA 59.990 40.000 0.00 0.00 37.45 3.33
319 320 6.295067 GGTTTATACAAAGAACCCTGCAACAT 60.295 38.462 0.00 0.00 37.45 2.71
320 321 6.909550 TTATACAAAGAACCCTGCAACATT 57.090 33.333 0.00 0.00 0.00 2.71
321 322 3.457610 ACAAAGAACCCTGCAACATTG 57.542 42.857 0.00 0.00 0.00 2.82
322 323 3.030291 ACAAAGAACCCTGCAACATTGA 58.970 40.909 0.00 0.00 0.00 2.57
323 324 3.642848 ACAAAGAACCCTGCAACATTGAT 59.357 39.130 0.00 0.00 0.00 2.57
324 325 4.101430 ACAAAGAACCCTGCAACATTGATT 59.899 37.500 0.00 0.00 0.00 2.57
325 326 3.947910 AGAACCCTGCAACATTGATTG 57.052 42.857 0.00 0.00 0.00 2.67
783 804 0.886490 CGAGGTGCTGCTGGAGTTTT 60.886 55.000 0.00 0.00 0.00 2.43
834 864 0.335361 GGAGGTAGGAGAGGTGGTCA 59.665 60.000 0.00 0.00 0.00 4.02
916 946 0.034059 GTGGTCAGTGCTACTGCTGT 59.966 55.000 10.36 0.66 45.54 4.40
923 953 0.250295 GTGCTACTGCTGTTGTGGGA 60.250 55.000 0.09 0.00 40.48 4.37
1074 1104 1.521681 GGAGTCGAAATCTGGGGCG 60.522 63.158 0.00 0.00 0.00 6.13
1078 1108 0.179084 GTCGAAATCTGGGGCGATCA 60.179 55.000 0.00 0.00 35.08 2.92
1215 1245 1.200948 GAGCTTGATGGGCACTTGTTC 59.799 52.381 0.00 0.00 0.00 3.18
1218 1248 1.523154 TTGATGGGCACTTGTTCGGC 61.523 55.000 0.00 0.00 0.00 5.54
1358 1388 1.447643 GGCTATCCACATCCGCTGT 59.552 57.895 0.00 0.00 39.20 4.40
1391 1421 3.157881 CTCTGTCCACCTTGTACTCAGA 58.842 50.000 0.00 0.00 0.00 3.27
1438 1468 4.107072 TCAGATTGAGGGGAAGATCAGTT 58.893 43.478 0.00 0.00 0.00 3.16
1583 1613 3.364441 GTGGATTGCACGCAGGCA 61.364 61.111 0.00 0.00 43.19 4.75
1763 1793 2.413112 CGTCTTCGACATTTGCAGTCAT 59.587 45.455 5.54 0.00 39.71 3.06
1768 1798 3.402110 TCGACATTTGCAGTCATTGAGT 58.598 40.909 5.54 0.00 35.77 3.41
1780 1810 1.100510 CATTGAGTGCATGGAGTGGG 58.899 55.000 0.00 0.00 0.00 4.61
1813 1843 3.498774 AATGTCATATCTGTGGGGAGC 57.501 47.619 0.00 0.00 0.00 4.70
2372 2403 7.067372 CAGTGCCCTAATTGATCAAATTGACTA 59.933 37.037 13.09 0.00 38.93 2.59
2501 2533 2.203153 GCCGGACTTGGTGTGTGT 60.203 61.111 5.05 0.00 0.00 3.72
3229 3261 4.021016 TGTTTGGCAGTACCTGTTTTGTTT 60.021 37.500 0.00 0.00 40.22 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.092068 TCACTCGAGAAAGTAATGGAAAATACA 58.908 33.333 21.68 0.00 0.00 2.29
1 2 8.381387 GTCACTCGAGAAAGTAATGGAAAATAC 58.619 37.037 21.68 0.00 0.00 1.89
2 3 8.092068 TGTCACTCGAGAAAGTAATGGAAAATA 58.908 33.333 21.68 0.00 0.00 1.40
3 4 6.934645 TGTCACTCGAGAAAGTAATGGAAAAT 59.065 34.615 21.68 0.00 0.00 1.82
4 5 6.285224 TGTCACTCGAGAAAGTAATGGAAAA 58.715 36.000 21.68 0.00 0.00 2.29
5 6 5.849510 TGTCACTCGAGAAAGTAATGGAAA 58.150 37.500 21.68 0.00 0.00 3.13
6 7 5.462530 TGTCACTCGAGAAAGTAATGGAA 57.537 39.130 21.68 0.00 0.00 3.53
7 8 5.661056 ATGTCACTCGAGAAAGTAATGGA 57.339 39.130 21.68 0.00 0.00 3.41
11 12 9.894783 GCTTATATATGTCACTCGAGAAAGTAA 57.105 33.333 21.68 0.32 0.00 2.24
12 13 9.286170 AGCTTATATATGTCACTCGAGAAAGTA 57.714 33.333 21.68 5.67 0.00 2.24
13 14 8.172352 AGCTTATATATGTCACTCGAGAAAGT 57.828 34.615 21.68 3.47 0.00 2.66
14 15 9.123709 GAAGCTTATATATGTCACTCGAGAAAG 57.876 37.037 21.68 8.68 0.00 2.62
15 16 8.630037 TGAAGCTTATATATGTCACTCGAGAAA 58.370 33.333 21.68 3.11 0.00 2.52
16 17 8.076781 GTGAAGCTTATATATGTCACTCGAGAA 58.923 37.037 21.68 3.52 34.05 2.87
17 18 7.228706 TGTGAAGCTTATATATGTCACTCGAGA 59.771 37.037 21.68 0.00 37.02 4.04
18 19 7.363431 TGTGAAGCTTATATATGTCACTCGAG 58.637 38.462 11.84 11.84 37.02 4.04
19 20 7.272037 TGTGAAGCTTATATATGTCACTCGA 57.728 36.000 0.00 0.00 37.02 4.04
20 21 7.274468 GGATGTGAAGCTTATATATGTCACTCG 59.726 40.741 0.00 0.00 37.02 4.18
21 22 8.090831 TGGATGTGAAGCTTATATATGTCACTC 58.909 37.037 0.00 1.13 37.02 3.51
22 23 7.875041 GTGGATGTGAAGCTTATATATGTCACT 59.125 37.037 0.00 0.00 37.02 3.41
23 24 7.657354 TGTGGATGTGAAGCTTATATATGTCAC 59.343 37.037 0.00 0.91 36.71 3.67
24 25 7.734942 TGTGGATGTGAAGCTTATATATGTCA 58.265 34.615 0.00 0.00 0.00 3.58
25 26 8.783833 ATGTGGATGTGAAGCTTATATATGTC 57.216 34.615 0.00 0.00 0.00 3.06
26 27 8.600668 AGATGTGGATGTGAAGCTTATATATGT 58.399 33.333 0.00 0.00 0.00 2.29
29 30 9.314133 ACTAGATGTGGATGTGAAGCTTATATA 57.686 33.333 0.00 0.00 0.00 0.86
30 31 8.200024 ACTAGATGTGGATGTGAAGCTTATAT 57.800 34.615 0.00 0.00 0.00 0.86
31 32 7.287696 TGACTAGATGTGGATGTGAAGCTTATA 59.712 37.037 0.00 0.00 0.00 0.98
32 33 6.098838 TGACTAGATGTGGATGTGAAGCTTAT 59.901 38.462 0.00 0.00 0.00 1.73
33 34 5.422012 TGACTAGATGTGGATGTGAAGCTTA 59.578 40.000 0.00 0.00 0.00 3.09
34 35 4.223700 TGACTAGATGTGGATGTGAAGCTT 59.776 41.667 0.00 0.00 0.00 3.74
35 36 3.771479 TGACTAGATGTGGATGTGAAGCT 59.229 43.478 0.00 0.00 0.00 3.74
36 37 4.128925 TGACTAGATGTGGATGTGAAGC 57.871 45.455 0.00 0.00 0.00 3.86
37 38 7.621428 AAATTGACTAGATGTGGATGTGAAG 57.379 36.000 0.00 0.00 0.00 3.02
38 39 8.946085 GTTAAATTGACTAGATGTGGATGTGAA 58.054 33.333 0.00 0.00 0.00 3.18
39 40 7.552687 GGTTAAATTGACTAGATGTGGATGTGA 59.447 37.037 0.00 0.00 0.00 3.58
40 41 7.554118 AGGTTAAATTGACTAGATGTGGATGTG 59.446 37.037 0.00 0.00 0.00 3.21
41 42 7.633789 AGGTTAAATTGACTAGATGTGGATGT 58.366 34.615 0.00 0.00 0.00 3.06
42 43 8.511604 AAGGTTAAATTGACTAGATGTGGATG 57.488 34.615 0.00 0.00 0.00 3.51
43 44 9.178758 GAAAGGTTAAATTGACTAGATGTGGAT 57.821 33.333 0.00 0.00 0.00 3.41
44 45 8.383175 AGAAAGGTTAAATTGACTAGATGTGGA 58.617 33.333 0.00 0.00 0.00 4.02
45 46 8.567285 AGAAAGGTTAAATTGACTAGATGTGG 57.433 34.615 0.00 0.00 0.00 4.17
46 47 8.669243 GGAGAAAGGTTAAATTGACTAGATGTG 58.331 37.037 0.00 0.00 0.00 3.21
47 48 8.606830 AGGAGAAAGGTTAAATTGACTAGATGT 58.393 33.333 0.00 0.00 0.00 3.06
48 49 9.454859 AAGGAGAAAGGTTAAATTGACTAGATG 57.545 33.333 0.00 0.00 0.00 2.90
50 51 9.862149 AAAAGGAGAAAGGTTAAATTGACTAGA 57.138 29.630 0.00 0.00 0.00 2.43
52 53 9.862149 AGAAAAGGAGAAAGGTTAAATTGACTA 57.138 29.630 0.00 0.00 0.00 2.59
53 54 8.768501 AGAAAAGGAGAAAGGTTAAATTGACT 57.231 30.769 0.00 0.00 0.00 3.41
54 55 9.817809 AAAGAAAAGGAGAAAGGTTAAATTGAC 57.182 29.630 0.00 0.00 0.00 3.18
55 56 9.816354 CAAAGAAAAGGAGAAAGGTTAAATTGA 57.184 29.630 0.00 0.00 0.00 2.57
56 57 9.816354 TCAAAGAAAAGGAGAAAGGTTAAATTG 57.184 29.630 0.00 0.00 0.00 2.32
59 60 7.979537 GCTTCAAAGAAAAGGAGAAAGGTTAAA 59.020 33.333 0.00 0.00 0.00 1.52
60 61 7.417456 GGCTTCAAAGAAAAGGAGAAAGGTTAA 60.417 37.037 0.00 0.00 0.00 2.01
61 62 6.040504 GGCTTCAAAGAAAAGGAGAAAGGTTA 59.959 38.462 0.00 0.00 0.00 2.85
62 63 5.163405 GGCTTCAAAGAAAAGGAGAAAGGTT 60.163 40.000 0.00 0.00 0.00 3.50
63 64 4.342378 GGCTTCAAAGAAAAGGAGAAAGGT 59.658 41.667 0.00 0.00 0.00 3.50
64 65 4.586421 AGGCTTCAAAGAAAAGGAGAAAGG 59.414 41.667 0.00 0.00 0.00 3.11
65 66 5.300286 TGAGGCTTCAAAGAAAAGGAGAAAG 59.700 40.000 0.00 0.00 0.00 2.62
66 67 5.200483 TGAGGCTTCAAAGAAAAGGAGAAA 58.800 37.500 0.00 0.00 0.00 2.52
67 68 4.792068 TGAGGCTTCAAAGAAAAGGAGAA 58.208 39.130 0.00 0.00 0.00 2.87
68 69 4.437682 TGAGGCTTCAAAGAAAAGGAGA 57.562 40.909 0.00 0.00 0.00 3.71
69 70 4.339247 TGTTGAGGCTTCAAAGAAAAGGAG 59.661 41.667 13.42 0.00 44.49 3.69
70 71 4.277476 TGTTGAGGCTTCAAAGAAAAGGA 58.723 39.130 13.42 0.00 44.49 3.36
71 72 4.654091 TGTTGAGGCTTCAAAGAAAAGG 57.346 40.909 13.42 0.00 44.49 3.11
72 73 5.410067 TGTTGTTGAGGCTTCAAAGAAAAG 58.590 37.500 13.42 0.00 44.49 2.27
73 74 5.398603 TGTTGTTGAGGCTTCAAAGAAAA 57.601 34.783 13.42 1.85 44.49 2.29
74 75 5.167845 GTTGTTGTTGAGGCTTCAAAGAAA 58.832 37.500 13.42 5.75 44.49 2.52
75 76 4.381505 GGTTGTTGTTGAGGCTTCAAAGAA 60.382 41.667 13.42 6.51 44.49 2.52
76 77 3.130340 GGTTGTTGTTGAGGCTTCAAAGA 59.870 43.478 13.42 1.97 44.49 2.52
77 78 3.119173 TGGTTGTTGTTGAGGCTTCAAAG 60.119 43.478 13.42 0.00 44.49 2.77
78 79 2.828520 TGGTTGTTGTTGAGGCTTCAAA 59.171 40.909 13.42 1.33 44.49 2.69
79 80 2.451490 TGGTTGTTGTTGAGGCTTCAA 58.549 42.857 7.24 7.24 40.92 2.69
80 81 2.136298 TGGTTGTTGTTGAGGCTTCA 57.864 45.000 0.00 0.00 0.00 3.02
81 82 3.057526 GGTATGGTTGTTGTTGAGGCTTC 60.058 47.826 0.00 0.00 0.00 3.86
82 83 2.890945 GGTATGGTTGTTGTTGAGGCTT 59.109 45.455 0.00 0.00 0.00 4.35
83 84 2.108250 AGGTATGGTTGTTGTTGAGGCT 59.892 45.455 0.00 0.00 0.00 4.58
84 85 2.514803 AGGTATGGTTGTTGTTGAGGC 58.485 47.619 0.00 0.00 0.00 4.70
85 86 4.827284 AGAAAGGTATGGTTGTTGTTGAGG 59.173 41.667 0.00 0.00 0.00 3.86
86 87 5.334105 CGAGAAAGGTATGGTTGTTGTTGAG 60.334 44.000 0.00 0.00 0.00 3.02
87 88 4.513692 CGAGAAAGGTATGGTTGTTGTTGA 59.486 41.667 0.00 0.00 0.00 3.18
88 89 4.320202 CCGAGAAAGGTATGGTTGTTGTTG 60.320 45.833 0.00 0.00 0.00 3.33
89 90 3.818773 CCGAGAAAGGTATGGTTGTTGTT 59.181 43.478 0.00 0.00 0.00 2.83
90 91 3.408634 CCGAGAAAGGTATGGTTGTTGT 58.591 45.455 0.00 0.00 0.00 3.32
91 92 2.747446 CCCGAGAAAGGTATGGTTGTTG 59.253 50.000 0.00 0.00 0.00 3.33
92 93 2.640826 TCCCGAGAAAGGTATGGTTGTT 59.359 45.455 0.00 0.00 0.00 2.83
93 94 2.027469 GTCCCGAGAAAGGTATGGTTGT 60.027 50.000 0.00 0.00 0.00 3.32
94 95 2.629051 GTCCCGAGAAAGGTATGGTTG 58.371 52.381 0.00 0.00 0.00 3.77
95 96 1.206371 CGTCCCGAGAAAGGTATGGTT 59.794 52.381 0.00 0.00 0.00 3.67
96 97 0.822164 CGTCCCGAGAAAGGTATGGT 59.178 55.000 0.00 0.00 0.00 3.55
97 98 0.104304 CCGTCCCGAGAAAGGTATGG 59.896 60.000 0.00 0.00 0.00 2.74
98 99 1.108776 TCCGTCCCGAGAAAGGTATG 58.891 55.000 0.00 0.00 0.00 2.39
99 100 1.755380 CTTCCGTCCCGAGAAAGGTAT 59.245 52.381 0.00 0.00 0.00 2.73
100 101 1.180029 CTTCCGTCCCGAGAAAGGTA 58.820 55.000 0.00 0.00 0.00 3.08
101 102 1.972978 CTTCCGTCCCGAGAAAGGT 59.027 57.895 0.00 0.00 0.00 3.50
102 103 1.448013 GCTTCCGTCCCGAGAAAGG 60.448 63.158 0.00 0.00 0.00 3.11
103 104 1.448013 GGCTTCCGTCCCGAGAAAG 60.448 63.158 0.00 0.00 0.00 2.62
104 105 1.477685 AAGGCTTCCGTCCCGAGAAA 61.478 55.000 0.00 0.00 0.00 2.52
105 106 1.885163 GAAGGCTTCCGTCCCGAGAA 61.885 60.000 16.50 0.00 0.00 2.87
106 107 2.283676 AAGGCTTCCGTCCCGAGA 60.284 61.111 0.00 0.00 0.00 4.04
107 108 1.889530 AAGAAGGCTTCCGTCCCGAG 61.890 60.000 23.09 0.00 32.53 4.63
108 109 1.477685 AAAGAAGGCTTCCGTCCCGA 61.478 55.000 23.09 0.00 32.53 5.14
109 110 0.605589 AAAAGAAGGCTTCCGTCCCG 60.606 55.000 23.09 0.00 32.53 5.14
110 111 0.881796 CAAAAGAAGGCTTCCGTCCC 59.118 55.000 23.09 0.00 32.53 4.46
111 112 0.241213 GCAAAAGAAGGCTTCCGTCC 59.759 55.000 23.09 5.33 32.53 4.79
112 113 0.951558 TGCAAAAGAAGGCTTCCGTC 59.048 50.000 23.09 9.18 31.82 4.79
113 114 0.668535 GTGCAAAAGAAGGCTTCCGT 59.331 50.000 23.09 9.36 31.82 4.69
114 115 0.667993 TGTGCAAAAGAAGGCTTCCG 59.332 50.000 23.09 10.83 31.82 4.30
115 116 1.408702 TGTGTGCAAAAGAAGGCTTCC 59.591 47.619 23.09 8.44 31.82 3.46
116 117 2.544486 CCTGTGTGCAAAAGAAGGCTTC 60.544 50.000 19.53 19.53 31.82 3.86
117 118 1.410153 CCTGTGTGCAAAAGAAGGCTT 59.590 47.619 0.00 0.00 35.37 4.35
118 119 1.035139 CCTGTGTGCAAAAGAAGGCT 58.965 50.000 0.00 0.00 0.00 4.58
119 120 1.032014 TCCTGTGTGCAAAAGAAGGC 58.968 50.000 0.00 0.00 0.00 4.35
120 121 3.610114 CGATTCCTGTGTGCAAAAGAAGG 60.610 47.826 0.00 0.00 0.00 3.46
121 122 3.003689 ACGATTCCTGTGTGCAAAAGAAG 59.996 43.478 0.00 0.00 0.00 2.85
122 123 2.948979 ACGATTCCTGTGTGCAAAAGAA 59.051 40.909 0.00 0.00 0.00 2.52
123 124 2.571212 ACGATTCCTGTGTGCAAAAGA 58.429 42.857 0.00 0.00 0.00 2.52
124 125 3.354089 AACGATTCCTGTGTGCAAAAG 57.646 42.857 0.00 0.00 0.00 2.27
125 126 3.701241 GAAACGATTCCTGTGTGCAAAA 58.299 40.909 0.00 0.00 0.00 2.44
126 127 3.347958 GAAACGATTCCTGTGTGCAAA 57.652 42.857 0.00 0.00 0.00 3.68
137 138 4.159377 TGTGCTTCAATGGAAACGATTC 57.841 40.909 0.00 0.00 31.35 2.52
138 139 4.789012 ATGTGCTTCAATGGAAACGATT 57.211 36.364 0.00 0.00 31.35 3.34
139 140 4.789012 AATGTGCTTCAATGGAAACGAT 57.211 36.364 0.00 0.00 31.35 3.73
140 141 5.647658 AGATAATGTGCTTCAATGGAAACGA 59.352 36.000 0.00 0.00 31.35 3.85
141 142 5.883661 AGATAATGTGCTTCAATGGAAACG 58.116 37.500 0.00 0.00 31.35 3.60
142 143 6.907212 CGTAGATAATGTGCTTCAATGGAAAC 59.093 38.462 0.00 0.00 31.35 2.78
143 144 6.821160 TCGTAGATAATGTGCTTCAATGGAAA 59.179 34.615 0.00 0.00 31.35 3.13
144 145 6.257849 GTCGTAGATAATGTGCTTCAATGGAA 59.742 38.462 0.00 0.00 40.67 3.53
145 146 5.753438 GTCGTAGATAATGTGCTTCAATGGA 59.247 40.000 0.00 0.00 40.67 3.41
146 147 5.050091 GGTCGTAGATAATGTGCTTCAATGG 60.050 44.000 0.00 0.00 40.67 3.16
147 148 5.050091 GGGTCGTAGATAATGTGCTTCAATG 60.050 44.000 0.00 0.00 40.67 2.82
148 149 5.057149 GGGTCGTAGATAATGTGCTTCAAT 58.943 41.667 0.00 0.00 40.67 2.57
149 150 4.161565 AGGGTCGTAGATAATGTGCTTCAA 59.838 41.667 0.00 0.00 40.67 2.69
150 151 3.704566 AGGGTCGTAGATAATGTGCTTCA 59.295 43.478 0.00 0.00 40.67 3.02
151 152 4.038162 AGAGGGTCGTAGATAATGTGCTTC 59.962 45.833 0.00 0.00 40.67 3.86
152 153 3.961408 AGAGGGTCGTAGATAATGTGCTT 59.039 43.478 0.00 0.00 40.67 3.91
153 154 3.319405 CAGAGGGTCGTAGATAATGTGCT 59.681 47.826 0.00 0.00 40.67 4.40
154 155 3.068307 ACAGAGGGTCGTAGATAATGTGC 59.932 47.826 0.00 0.00 40.67 4.57
155 156 4.920640 ACAGAGGGTCGTAGATAATGTG 57.079 45.455 0.00 0.00 40.67 3.21
156 157 4.710375 ACAACAGAGGGTCGTAGATAATGT 59.290 41.667 0.00 0.00 40.67 2.71
157 158 5.263968 ACAACAGAGGGTCGTAGATAATG 57.736 43.478 0.00 0.00 40.67 1.90
158 159 4.341520 GGACAACAGAGGGTCGTAGATAAT 59.658 45.833 0.00 0.00 40.67 1.28
159 160 3.698040 GGACAACAGAGGGTCGTAGATAA 59.302 47.826 0.00 0.00 40.67 1.75
160 161 3.285484 GGACAACAGAGGGTCGTAGATA 58.715 50.000 0.00 0.00 40.67 1.98
161 162 2.100989 GGACAACAGAGGGTCGTAGAT 58.899 52.381 0.00 0.00 40.67 1.98
162 163 1.202964 TGGACAACAGAGGGTCGTAGA 60.203 52.381 0.00 0.00 34.87 2.59
163 164 1.254026 TGGACAACAGAGGGTCGTAG 58.746 55.000 0.00 0.00 34.87 3.51
164 165 1.616865 CTTGGACAACAGAGGGTCGTA 59.383 52.381 0.00 0.00 34.87 3.43
165 166 0.393077 CTTGGACAACAGAGGGTCGT 59.607 55.000 0.00 0.00 34.87 4.34
166 167 0.679505 TCTTGGACAACAGAGGGTCG 59.320 55.000 0.00 0.00 34.87 4.79
167 168 1.605712 CGTCTTGGACAACAGAGGGTC 60.606 57.143 0.00 0.00 32.09 4.46
168 169 0.393077 CGTCTTGGACAACAGAGGGT 59.607 55.000 0.00 0.00 32.09 4.34
169 170 0.951040 GCGTCTTGGACAACAGAGGG 60.951 60.000 0.00 0.00 32.09 4.30
170 171 0.249868 TGCGTCTTGGACAACAGAGG 60.250 55.000 0.00 0.00 32.09 3.69
171 172 0.861837 GTGCGTCTTGGACAACAGAG 59.138 55.000 0.00 0.00 39.04 3.35
172 173 0.176910 TGTGCGTCTTGGACAACAGA 59.823 50.000 0.00 0.00 46.80 3.41
173 174 2.689083 TGTGCGTCTTGGACAACAG 58.311 52.632 0.00 0.00 46.80 3.16
174 175 4.943822 TGTGCGTCTTGGACAACA 57.056 50.000 0.00 0.00 46.80 3.33
178 179 0.951558 ATTTGGTGTGCGTCTTGGAC 59.048 50.000 0.00 0.00 39.78 4.02
179 180 1.606668 GAATTTGGTGTGCGTCTTGGA 59.393 47.619 0.00 0.00 0.00 3.53
180 181 1.662876 CGAATTTGGTGTGCGTCTTGG 60.663 52.381 0.00 0.00 0.00 3.61
181 182 1.262950 TCGAATTTGGTGTGCGTCTTG 59.737 47.619 0.00 0.00 0.00 3.02
182 183 1.263217 GTCGAATTTGGTGTGCGTCTT 59.737 47.619 0.00 0.00 0.00 3.01
183 184 0.865769 GTCGAATTTGGTGTGCGTCT 59.134 50.000 0.00 0.00 0.00 4.18
184 185 0.584396 TGTCGAATTTGGTGTGCGTC 59.416 50.000 0.00 0.00 0.00 5.19
185 186 1.234821 ATGTCGAATTTGGTGTGCGT 58.765 45.000 0.00 0.00 0.00 5.24
186 187 1.978097 CAATGTCGAATTTGGTGTGCG 59.022 47.619 0.00 0.00 0.00 5.34
187 188 2.725723 CACAATGTCGAATTTGGTGTGC 59.274 45.455 11.87 0.00 0.00 4.57
188 189 3.730215 CACACAATGTCGAATTTGGTGTG 59.270 43.478 18.03 18.03 40.48 3.82
189 190 3.795150 GCACACAATGTCGAATTTGGTGT 60.795 43.478 19.44 14.00 31.93 4.16
190 191 2.725723 GCACACAATGTCGAATTTGGTG 59.274 45.455 16.88 16.88 32.21 4.17
191 192 2.360483 TGCACACAATGTCGAATTTGGT 59.640 40.909 11.87 5.62 0.00 3.67
192 193 3.010624 TGCACACAATGTCGAATTTGG 57.989 42.857 11.87 5.14 0.00 3.28
193 194 5.801444 ACATATGCACACAATGTCGAATTTG 59.199 36.000 1.58 6.96 0.00 2.32
194 195 5.953183 ACATATGCACACAATGTCGAATTT 58.047 33.333 1.58 0.00 0.00 1.82
195 196 5.449041 GGACATATGCACACAATGTCGAATT 60.449 40.000 19.08 0.00 46.75 2.17
196 197 4.035558 GGACATATGCACACAATGTCGAAT 59.964 41.667 19.08 0.00 46.75 3.34
197 198 3.373748 GGACATATGCACACAATGTCGAA 59.626 43.478 19.08 0.00 46.75 3.71
198 199 2.935849 GGACATATGCACACAATGTCGA 59.064 45.455 19.08 0.00 46.75 4.20
199 200 2.938451 AGGACATATGCACACAATGTCG 59.062 45.455 19.08 0.00 46.75 4.35
200 201 3.691118 ACAGGACATATGCACACAATGTC 59.309 43.478 18.21 18.21 45.64 3.06
201 202 3.689347 ACAGGACATATGCACACAATGT 58.311 40.909 1.58 5.73 36.57 2.71
202 203 5.816449 TTACAGGACATATGCACACAATG 57.184 39.130 1.58 0.00 0.00 2.82
203 204 6.832520 TTTTACAGGACATATGCACACAAT 57.167 33.333 1.58 0.00 0.00 2.71
204 205 6.832520 ATTTTACAGGACATATGCACACAA 57.167 33.333 1.58 0.00 0.00 3.33
205 206 6.127758 GGAATTTTACAGGACATATGCACACA 60.128 38.462 1.58 0.00 0.00 3.72
206 207 6.127758 TGGAATTTTACAGGACATATGCACAC 60.128 38.462 1.58 0.00 0.00 3.82
207 208 5.948758 TGGAATTTTACAGGACATATGCACA 59.051 36.000 1.58 0.00 0.00 4.57
208 209 6.449635 TGGAATTTTACAGGACATATGCAC 57.550 37.500 1.58 0.00 0.00 4.57
209 210 5.067674 GCTGGAATTTTACAGGACATATGCA 59.932 40.000 1.58 0.00 39.59 3.96
210 211 5.067674 TGCTGGAATTTTACAGGACATATGC 59.932 40.000 1.58 0.00 39.59 3.14
211 212 6.698008 TGCTGGAATTTTACAGGACATATG 57.302 37.500 0.00 0.00 39.59 1.78
217 218 3.517296 TGGTGCTGGAATTTTACAGGA 57.483 42.857 4.75 0.00 39.59 3.86
218 219 3.056607 CCTTGGTGCTGGAATTTTACAGG 60.057 47.826 4.75 0.00 39.59 4.00
219 220 3.614870 GCCTTGGTGCTGGAATTTTACAG 60.615 47.826 0.00 0.00 42.20 2.74
220 221 2.298729 GCCTTGGTGCTGGAATTTTACA 59.701 45.455 0.00 0.00 0.00 2.41
221 222 2.298729 TGCCTTGGTGCTGGAATTTTAC 59.701 45.455 0.00 0.00 0.00 2.01
222 223 2.603021 TGCCTTGGTGCTGGAATTTTA 58.397 42.857 0.00 0.00 0.00 1.52
223 224 1.422531 TGCCTTGGTGCTGGAATTTT 58.577 45.000 0.00 0.00 0.00 1.82
224 225 1.422531 TTGCCTTGGTGCTGGAATTT 58.577 45.000 0.00 0.00 0.00 1.82
225 226 1.276989 CATTGCCTTGGTGCTGGAATT 59.723 47.619 0.00 0.00 0.00 2.17
226 227 0.899720 CATTGCCTTGGTGCTGGAAT 59.100 50.000 0.00 0.00 0.00 3.01
227 228 0.469705 ACATTGCCTTGGTGCTGGAA 60.470 50.000 0.00 0.00 0.00 3.53
228 229 0.895100 GACATTGCCTTGGTGCTGGA 60.895 55.000 0.00 0.00 0.00 3.86
229 230 1.180456 TGACATTGCCTTGGTGCTGG 61.180 55.000 0.00 0.00 0.00 4.85
230 231 0.892755 ATGACATTGCCTTGGTGCTG 59.107 50.000 0.00 0.00 0.00 4.41
231 232 1.180029 GATGACATTGCCTTGGTGCT 58.820 50.000 0.00 0.00 0.00 4.40
232 233 0.889994 TGATGACATTGCCTTGGTGC 59.110 50.000 0.00 0.00 0.00 5.01
233 234 3.663995 TTTGATGACATTGCCTTGGTG 57.336 42.857 0.00 0.00 0.00 4.17
234 235 5.657745 TGATATTTGATGACATTGCCTTGGT 59.342 36.000 0.00 0.00 0.00 3.67
235 236 6.151663 TGATATTTGATGACATTGCCTTGG 57.848 37.500 0.00 0.00 0.00 3.61
236 237 6.866770 GGATGATATTTGATGACATTGCCTTG 59.133 38.462 0.00 0.00 0.00 3.61
237 238 6.014840 GGGATGATATTTGATGACATTGCCTT 60.015 38.462 0.00 0.00 0.00 4.35
238 239 5.479375 GGGATGATATTTGATGACATTGCCT 59.521 40.000 0.00 0.00 0.00 4.75
239 240 5.479375 AGGGATGATATTTGATGACATTGCC 59.521 40.000 0.00 0.00 0.00 4.52
240 241 6.585695 AGGGATGATATTTGATGACATTGC 57.414 37.500 0.00 0.00 0.00 3.56
241 242 8.859236 AGTAGGGATGATATTTGATGACATTG 57.141 34.615 0.00 0.00 0.00 2.82
242 243 9.872684 AAAGTAGGGATGATATTTGATGACATT 57.127 29.630 0.00 0.00 0.00 2.71
243 244 9.872684 AAAAGTAGGGATGATATTTGATGACAT 57.127 29.630 0.00 0.00 0.00 3.06
244 245 9.123902 CAAAAGTAGGGATGATATTTGATGACA 57.876 33.333 0.00 0.00 0.00 3.58
245 246 8.571336 CCAAAAGTAGGGATGATATTTGATGAC 58.429 37.037 0.00 0.00 0.00 3.06
246 247 7.231317 GCCAAAAGTAGGGATGATATTTGATGA 59.769 37.037 0.00 0.00 0.00 2.92
247 248 7.232127 AGCCAAAAGTAGGGATGATATTTGATG 59.768 37.037 0.00 0.00 0.00 3.07
248 249 7.300658 AGCCAAAAGTAGGGATGATATTTGAT 58.699 34.615 0.00 0.00 0.00 2.57
249 250 6.672593 AGCCAAAAGTAGGGATGATATTTGA 58.327 36.000 0.00 0.00 0.00 2.69
250 251 6.966534 AGCCAAAAGTAGGGATGATATTTG 57.033 37.500 0.00 0.00 0.00 2.32
251 252 7.125391 TGAAGCCAAAAGTAGGGATGATATTT 58.875 34.615 0.00 0.00 0.00 1.40
252 253 6.672593 TGAAGCCAAAAGTAGGGATGATATT 58.327 36.000 0.00 0.00 0.00 1.28
253 254 6.266131 TGAAGCCAAAAGTAGGGATGATAT 57.734 37.500 0.00 0.00 0.00 1.63
254 255 5.708736 TGAAGCCAAAAGTAGGGATGATA 57.291 39.130 0.00 0.00 0.00 2.15
255 256 4.591321 TGAAGCCAAAAGTAGGGATGAT 57.409 40.909 0.00 0.00 0.00 2.45
256 257 4.380843 TTGAAGCCAAAAGTAGGGATGA 57.619 40.909 0.00 0.00 0.00 2.92
257 258 5.394553 GGAATTGAAGCCAAAAGTAGGGATG 60.395 44.000 0.00 0.00 35.67 3.51
258 259 4.711846 GGAATTGAAGCCAAAAGTAGGGAT 59.288 41.667 0.00 0.00 35.67 3.85
259 260 4.086457 GGAATTGAAGCCAAAAGTAGGGA 58.914 43.478 0.00 0.00 35.67 4.20
260 261 4.089361 AGGAATTGAAGCCAAAAGTAGGG 58.911 43.478 0.00 0.00 35.67 3.53
261 262 4.142600 CGAGGAATTGAAGCCAAAAGTAGG 60.143 45.833 0.00 0.00 35.67 3.18
262 263 4.455877 ACGAGGAATTGAAGCCAAAAGTAG 59.544 41.667 0.00 0.00 35.67 2.57
263 264 4.394729 ACGAGGAATTGAAGCCAAAAGTA 58.605 39.130 0.00 0.00 35.67 2.24
264 265 3.222603 ACGAGGAATTGAAGCCAAAAGT 58.777 40.909 0.00 0.00 35.67 2.66
265 266 3.253188 TGACGAGGAATTGAAGCCAAAAG 59.747 43.478 0.00 0.00 35.67 2.27
266 267 3.004315 GTGACGAGGAATTGAAGCCAAAA 59.996 43.478 0.00 0.00 35.67 2.44
267 268 2.552315 GTGACGAGGAATTGAAGCCAAA 59.448 45.455 0.00 0.00 35.67 3.28
268 269 2.151202 GTGACGAGGAATTGAAGCCAA 58.849 47.619 0.00 0.00 36.61 4.52
269 270 1.071542 TGTGACGAGGAATTGAAGCCA 59.928 47.619 0.00 0.00 0.00 4.75
270 271 1.464997 GTGTGACGAGGAATTGAAGCC 59.535 52.381 0.00 0.00 0.00 4.35
271 272 2.158449 CAGTGTGACGAGGAATTGAAGC 59.842 50.000 0.00 0.00 0.00 3.86
272 273 2.738846 CCAGTGTGACGAGGAATTGAAG 59.261 50.000 0.00 0.00 0.00 3.02
273 274 2.549992 CCCAGTGTGACGAGGAATTGAA 60.550 50.000 0.00 0.00 0.00 2.69
274 275 1.001974 CCCAGTGTGACGAGGAATTGA 59.998 52.381 0.00 0.00 0.00 2.57
275 276 1.442769 CCCAGTGTGACGAGGAATTG 58.557 55.000 0.00 0.00 0.00 2.32
276 277 0.324943 CCCCAGTGTGACGAGGAATT 59.675 55.000 0.00 0.00 0.00 2.17
277 278 0.836400 ACCCCAGTGTGACGAGGAAT 60.836 55.000 0.00 0.00 0.00 3.01
278 279 1.052124 AACCCCAGTGTGACGAGGAA 61.052 55.000 0.00 0.00 0.00 3.36
279 280 1.052124 AAACCCCAGTGTGACGAGGA 61.052 55.000 0.00 0.00 0.00 3.71
280 281 0.682852 TAAACCCCAGTGTGACGAGG 59.317 55.000 0.00 0.00 0.00 4.63
281 282 2.762535 ATAAACCCCAGTGTGACGAG 57.237 50.000 0.00 0.00 0.00 4.18
282 283 2.898612 TGTATAAACCCCAGTGTGACGA 59.101 45.455 0.00 0.00 0.00 4.20
283 284 3.322211 TGTATAAACCCCAGTGTGACG 57.678 47.619 0.00 0.00 0.00 4.35
284 285 5.310451 TCTTTGTATAAACCCCAGTGTGAC 58.690 41.667 0.00 0.00 0.00 3.67
285 286 5.570205 TCTTTGTATAAACCCCAGTGTGA 57.430 39.130 0.00 0.00 0.00 3.58
286 287 5.048294 GGTTCTTTGTATAAACCCCAGTGTG 60.048 44.000 0.00 0.00 37.13 3.82
287 288 5.074804 GGTTCTTTGTATAAACCCCAGTGT 58.925 41.667 0.00 0.00 37.13 3.55
288 289 5.638596 GGTTCTTTGTATAAACCCCAGTG 57.361 43.478 0.00 0.00 37.13 3.66
294 295 5.010213 TGTTGCAGGGTTCTTTGTATAAACC 59.990 40.000 0.00 0.00 41.41 3.27
295 296 6.079424 TGTTGCAGGGTTCTTTGTATAAAC 57.921 37.500 0.00 0.00 0.00 2.01
296 297 6.909550 ATGTTGCAGGGTTCTTTGTATAAA 57.090 33.333 0.00 0.00 0.00 1.40
297 298 6.491745 TCAATGTTGCAGGGTTCTTTGTATAA 59.508 34.615 0.00 0.00 0.00 0.98
298 299 6.007076 TCAATGTTGCAGGGTTCTTTGTATA 58.993 36.000 0.00 0.00 0.00 1.47
299 300 4.832266 TCAATGTTGCAGGGTTCTTTGTAT 59.168 37.500 0.00 0.00 0.00 2.29
300 301 4.211125 TCAATGTTGCAGGGTTCTTTGTA 58.789 39.130 0.00 0.00 0.00 2.41
301 302 3.030291 TCAATGTTGCAGGGTTCTTTGT 58.970 40.909 0.00 0.00 0.00 2.83
302 303 3.731652 TCAATGTTGCAGGGTTCTTTG 57.268 42.857 0.00 0.00 0.00 2.77
303 304 4.634199 CAATCAATGTTGCAGGGTTCTTT 58.366 39.130 0.00 0.00 0.00 2.52
304 305 4.261578 CAATCAATGTTGCAGGGTTCTT 57.738 40.909 0.00 0.00 0.00 2.52
305 306 3.947910 CAATCAATGTTGCAGGGTTCT 57.052 42.857 0.00 0.00 0.00 3.01
314 315 8.246908 ACATACTGAAATTGCAATCAATGTTG 57.753 30.769 13.38 8.22 41.77 3.33
315 316 8.714179 CAACATACTGAAATTGCAATCAATGTT 58.286 29.630 18.69 18.69 41.77 2.71
316 317 8.089597 TCAACATACTGAAATTGCAATCAATGT 58.910 29.630 13.38 12.40 41.77 2.71
317 318 8.468720 TCAACATACTGAAATTGCAATCAATG 57.531 30.769 13.38 11.80 41.77 2.82
318 319 8.928733 GTTCAACATACTGAAATTGCAATCAAT 58.071 29.630 13.38 0.33 44.32 2.57
319 320 7.384660 GGTTCAACATACTGAAATTGCAATCAA 59.615 33.333 13.38 0.42 37.08 2.57
320 321 6.867816 GGTTCAACATACTGAAATTGCAATCA 59.132 34.615 13.38 7.51 37.08 2.57
321 322 6.033831 CGGTTCAACATACTGAAATTGCAATC 59.966 38.462 13.38 2.34 37.08 2.67
322 323 5.863397 CGGTTCAACATACTGAAATTGCAAT 59.137 36.000 5.99 5.99 37.08 3.56
323 324 5.218885 CGGTTCAACATACTGAAATTGCAA 58.781 37.500 0.00 0.00 37.08 4.08
324 325 4.320861 CCGGTTCAACATACTGAAATTGCA 60.321 41.667 0.00 0.00 37.08 4.08
325 326 4.165779 CCGGTTCAACATACTGAAATTGC 58.834 43.478 0.00 0.00 37.08 3.56
326 327 5.371115 ACCGGTTCAACATACTGAAATTG 57.629 39.130 0.00 0.00 37.08 2.32
327 328 6.094881 CCATACCGGTTCAACATACTGAAATT 59.905 38.462 15.04 0.00 37.08 1.82
328 329 5.588648 CCATACCGGTTCAACATACTGAAAT 59.411 40.000 15.04 0.00 37.08 2.17
329 330 4.938832 CCATACCGGTTCAACATACTGAAA 59.061 41.667 15.04 0.00 37.08 2.69
330 331 4.509616 CCATACCGGTTCAACATACTGAA 58.490 43.478 15.04 0.00 32.89 3.02
331 332 3.118555 CCCATACCGGTTCAACATACTGA 60.119 47.826 15.04 0.00 0.00 3.41
332 333 3.202906 CCCATACCGGTTCAACATACTG 58.797 50.000 15.04 0.00 0.00 2.74
333 334 2.420967 GCCCATACCGGTTCAACATACT 60.421 50.000 15.04 0.00 0.00 2.12
334 335 1.944709 GCCCATACCGGTTCAACATAC 59.055 52.381 15.04 0.00 0.00 2.39
335 336 1.134037 GGCCCATACCGGTTCAACATA 60.134 52.381 15.04 0.00 0.00 2.29
721 742 0.179032 TTCGCATGGACAACACCTGT 60.179 50.000 0.00 0.00 42.61 4.00
808 832 2.522193 CTCCTACCTCCTCCCGCC 60.522 72.222 0.00 0.00 0.00 6.13
834 864 2.749044 CAGCAACGGCAGCTCCAT 60.749 61.111 0.00 0.00 44.61 3.41
916 946 1.039068 CCAACAACAGCATCCCACAA 58.961 50.000 0.00 0.00 0.00 3.33
923 953 2.158682 TCTACACACCCAACAACAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
1215 1245 2.051345 GGTTCAGCAACAACGCCG 60.051 61.111 0.00 0.00 33.70 6.46
1218 1248 0.588252 CTCCTGGTTCAGCAACAACG 59.412 55.000 0.00 0.00 33.70 4.10
1391 1421 5.510179 GCAATTAGCATGACATTGCCCTTAT 60.510 40.000 19.00 0.00 44.70 1.73
1438 1468 2.747460 GTCGCCTTGATGCAGCCA 60.747 61.111 0.00 0.00 0.00 4.75
1583 1613 2.233271 CCTCCAACAGTTTCAGCACAT 58.767 47.619 0.00 0.00 0.00 3.21
1763 1793 1.379916 CCCCACTCCATGCACTCAA 59.620 57.895 0.00 0.00 0.00 3.02
1768 1798 3.405093 GATCGCCCCACTCCATGCA 62.405 63.158 0.00 0.00 0.00 3.96
1780 1810 1.173043 TGACATTTGTTGGGATCGCC 58.827 50.000 7.38 0.12 0.00 5.54
2128 2158 0.969894 CCAGAGTCGAGAACCCACTT 59.030 55.000 0.00 0.00 0.00 3.16
2372 2403 5.335897 CCAAATTTGTCAAGGATCACACGAT 60.336 40.000 16.73 0.00 33.31 3.73
2501 2533 0.321564 CTTGTCCTCCATGGTCGCAA 60.322 55.000 12.58 11.66 37.07 4.85
3229 3261 1.338107 ACAGAAGGACGGTGATCACA 58.662 50.000 26.47 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.