Multiple sequence alignment - TraesCS7B01G106700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G106700 chr7B 100.000 2589 0 0 561 3149 123655136 123657724 0.000000e+00 4782.0
1 TraesCS7B01G106700 chr7B 100.000 278 0 0 1 278 123654576 123654853 6.020000e-142 514.0
2 TraesCS7B01G106700 chr7B 85.816 141 16 4 6 145 727871972 727872109 2.530000e-31 147.0
3 TraesCS7B01G106700 chr7B 86.567 134 13 5 1 133 727920008 727920137 3.270000e-30 143.0
4 TraesCS7B01G106700 chr7D 96.603 2208 71 2 945 3149 161390597 161392803 0.000000e+00 3659.0
5 TraesCS7B01G106700 chr7D 86.364 176 11 7 764 927 161390436 161390610 2.500000e-41 180.0
6 TraesCS7B01G106700 chr7A 96.490 2108 61 8 1050 3149 162577896 162579998 0.000000e+00 3470.0
7 TraesCS7B01G106700 chr7A 84.651 215 11 9 838 1052 162572410 162572602 8.910000e-46 195.0
8 TraesCS7B01G106700 chr6D 82.155 1188 194 16 979 2154 8967563 8968744 0.000000e+00 1003.0
9 TraesCS7B01G106700 chr6D 80.492 1179 214 13 989 2155 8552807 8551633 0.000000e+00 889.0
10 TraesCS7B01G106700 chr6B 81.065 1183 208 14 979 2150 16428985 16430162 0.000000e+00 929.0
11 TraesCS7B01G106700 chr6B 85.870 92 9 4 643 733 189215284 189215196 9.300000e-16 95.3
12 TraesCS7B01G106700 chr6B 73.932 234 33 14 2520 2733 15747712 15747487 5.640000e-08 69.4
13 TraesCS7B01G106700 chr2B 79.933 1201 221 12 990 2177 89499946 89501139 0.000000e+00 865.0
14 TraesCS7B01G106700 chr2B 74.836 914 205 21 1272 2166 709487499 709486592 1.060000e-104 390.0
15 TraesCS7B01G106700 chr1A 80.314 1148 199 23 1019 2151 589248476 589247341 0.000000e+00 843.0
16 TraesCS7B01G106700 chr6A 78.916 1181 219 24 986 2149 9338938 9340105 0.000000e+00 774.0
17 TraesCS7B01G106700 chr6A 78.541 1193 216 30 994 2173 9350234 9351399 0.000000e+00 749.0
18 TraesCS7B01G106700 chr2D 93.220 177 11 1 563 738 523160568 523160744 3.120000e-65 259.0
19 TraesCS7B01G106700 chr2D 91.057 123 6 4 157 278 523160312 523160430 9.040000e-36 161.0
20 TraesCS7B01G106700 chr2D 86.897 145 14 5 2 145 622307419 622307559 1.170000e-34 158.0
21 TraesCS7B01G106700 chr5D 92.737 179 12 1 563 740 20981812 20981990 1.120000e-64 257.0
22 TraesCS7B01G106700 chr5D 90.244 123 7 4 157 278 20981572 20981690 4.210000e-34 156.0
23 TraesCS7B01G106700 chr3D 92.655 177 12 1 563 738 380977441 380977617 1.450000e-63 254.0
24 TraesCS7B01G106700 chr3D 88.618 123 9 4 157 278 380977212 380977330 9.100000e-31 145.0
25 TraesCS7B01G106700 chr3D 85.714 140 17 3 6 145 610027060 610027196 9.100000e-31 145.0
26 TraesCS7B01G106700 chr4A 94.309 123 6 1 25 147 636669788 636669909 1.490000e-43 187.0
27 TraesCS7B01G106700 chr2A 92.424 132 8 2 149 278 416910109 416910240 1.490000e-43 187.0
28 TraesCS7B01G106700 chr2A 86.331 139 14 5 9 145 753764978 753765113 2.530000e-31 147.0
29 TraesCS7B01G106700 chr1D 87.234 141 12 5 6 145 441735831 441735966 4.210000e-34 156.0
30 TraesCS7B01G106700 chr1D 86.957 138 12 6 9 145 95790770 95790638 1.960000e-32 150.0
31 TraesCS7B01G106700 chr1D 86.525 141 13 5 6 145 441628198 441628333 1.960000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G106700 chr7B 123654576 123657724 3148 False 2648.0 4782 100.0000 1 3149 2 chr7B.!!$F3 3148
1 TraesCS7B01G106700 chr7D 161390436 161392803 2367 False 1919.5 3659 91.4835 764 3149 2 chr7D.!!$F1 2385
2 TraesCS7B01G106700 chr7A 162577896 162579998 2102 False 3470.0 3470 96.4900 1050 3149 1 chr7A.!!$F2 2099
3 TraesCS7B01G106700 chr6D 8967563 8968744 1181 False 1003.0 1003 82.1550 979 2154 1 chr6D.!!$F1 1175
4 TraesCS7B01G106700 chr6D 8551633 8552807 1174 True 889.0 889 80.4920 989 2155 1 chr6D.!!$R1 1166
5 TraesCS7B01G106700 chr6B 16428985 16430162 1177 False 929.0 929 81.0650 979 2150 1 chr6B.!!$F1 1171
6 TraesCS7B01G106700 chr2B 89499946 89501139 1193 False 865.0 865 79.9330 990 2177 1 chr2B.!!$F1 1187
7 TraesCS7B01G106700 chr2B 709486592 709487499 907 True 390.0 390 74.8360 1272 2166 1 chr2B.!!$R1 894
8 TraesCS7B01G106700 chr1A 589247341 589248476 1135 True 843.0 843 80.3140 1019 2151 1 chr1A.!!$R1 1132
9 TraesCS7B01G106700 chr6A 9338938 9340105 1167 False 774.0 774 78.9160 986 2149 1 chr6A.!!$F1 1163
10 TraesCS7B01G106700 chr6A 9350234 9351399 1165 False 749.0 749 78.5410 994 2173 1 chr6A.!!$F2 1179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.033796 CCCCTCATGGCATCACTTGT 60.034 55.0 0.0 0.0 0.0 3.16 F
245 246 0.033796 CAGCATCTGTGGGGGATTGT 60.034 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1769 1.702401 TGGTCCACTTTGGCTGTGATA 59.298 47.619 7.26 0.0 37.47 2.15 R
2228 2264 2.507058 ACAATCCAGCTTAGCTCATGGA 59.493 45.455 14.60 14.6 36.40 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.859517 AAAAACAAAATTGATGCTCCAAAATG 57.140 26.923 0.00 0.00 0.00 2.32
32 33 5.616488 ACAAAATTGATGCTCCAAAATGC 57.384 34.783 0.00 0.00 0.00 3.56
33 34 4.152759 ACAAAATTGATGCTCCAAAATGCG 59.847 37.500 0.00 0.00 0.00 4.73
34 35 3.598019 AATTGATGCTCCAAAATGCGT 57.402 38.095 0.00 0.00 0.00 5.24
35 36 3.598019 ATTGATGCTCCAAAATGCGTT 57.402 38.095 0.00 0.00 0.00 4.84
36 37 3.383620 TTGATGCTCCAAAATGCGTTT 57.616 38.095 0.00 0.00 0.00 3.60
37 38 2.674954 TGATGCTCCAAAATGCGTTTG 58.325 42.857 4.29 5.20 45.36 2.93
53 54 8.779603 AATGCGTTTGAAAATAACATTTTTGG 57.220 26.923 0.00 0.00 0.00 3.28
54 55 7.539712 TGCGTTTGAAAATAACATTTTTGGA 57.460 28.000 0.00 0.00 0.00 3.53
55 56 7.625553 TGCGTTTGAAAATAACATTTTTGGAG 58.374 30.769 0.00 0.00 0.00 3.86
56 57 6.573357 GCGTTTGAAAATAACATTTTTGGAGC 59.427 34.615 0.00 0.00 0.00 4.70
57 58 7.625553 CGTTTGAAAATAACATTTTTGGAGCA 58.374 30.769 0.00 0.00 0.00 4.26
58 59 8.281893 CGTTTGAAAATAACATTTTTGGAGCAT 58.718 29.630 0.00 0.00 0.00 3.79
59 60 9.597999 GTTTGAAAATAACATTTTTGGAGCATC 57.402 29.630 0.00 0.00 0.00 3.91
60 61 8.899427 TTGAAAATAACATTTTTGGAGCATCA 57.101 26.923 0.00 0.00 36.25 3.07
61 62 8.537049 TGAAAATAACATTTTTGGAGCATCAG 57.463 30.769 0.00 0.00 36.25 2.90
62 63 8.149647 TGAAAATAACATTTTTGGAGCATCAGT 58.850 29.630 0.00 0.00 36.25 3.41
63 64 8.907222 AAAATAACATTTTTGGAGCATCAGTT 57.093 26.923 0.00 0.00 36.25 3.16
64 65 8.907222 AAATAACATTTTTGGAGCATCAGTTT 57.093 26.923 0.00 0.00 36.25 2.66
65 66 8.907222 AATAACATTTTTGGAGCATCAGTTTT 57.093 26.923 0.00 0.00 36.25 2.43
66 67 6.607735 AACATTTTTGGAGCATCAGTTTTG 57.392 33.333 0.00 0.00 36.25 2.44
67 68 5.673514 ACATTTTTGGAGCATCAGTTTTGT 58.326 33.333 0.00 0.00 36.25 2.83
68 69 6.114767 ACATTTTTGGAGCATCAGTTTTGTT 58.885 32.000 0.00 0.00 36.25 2.83
69 70 6.598850 ACATTTTTGGAGCATCAGTTTTGTTT 59.401 30.769 0.00 0.00 36.25 2.83
70 71 7.121020 ACATTTTTGGAGCATCAGTTTTGTTTT 59.879 29.630 0.00 0.00 36.25 2.43
71 72 7.446001 TTTTTGGAGCATCAGTTTTGTTTTT 57.554 28.000 0.00 0.00 36.25 1.94
107 108 4.769859 CACAAATGTCATGTGGTGATGA 57.230 40.909 7.91 0.00 43.45 2.92
108 109 5.123805 CACAAATGTCATGTGGTGATGAA 57.876 39.130 7.91 0.00 43.45 2.57
109 110 5.530712 CACAAATGTCATGTGGTGATGAAA 58.469 37.500 7.91 0.00 43.45 2.69
110 111 6.160684 CACAAATGTCATGTGGTGATGAAAT 58.839 36.000 7.91 0.00 43.45 2.17
111 112 6.647481 CACAAATGTCATGTGGTGATGAAATT 59.353 34.615 7.91 0.00 40.58 1.82
112 113 7.171848 CACAAATGTCATGTGGTGATGAAATTT 59.828 33.333 7.91 0.00 45.34 1.82
113 114 7.716123 ACAAATGTCATGTGGTGATGAAATTTT 59.284 29.630 7.91 1.07 43.38 1.82
114 115 7.661127 AATGTCATGTGGTGATGAAATTTTG 57.339 32.000 0.00 0.00 37.08 2.44
115 116 4.989797 TGTCATGTGGTGATGAAATTTTGC 59.010 37.500 0.00 0.00 39.48 3.68
116 117 4.090354 GTCATGTGGTGATGAAATTTTGCG 59.910 41.667 0.00 0.00 39.48 4.85
117 118 3.998099 TGTGGTGATGAAATTTTGCGA 57.002 38.095 0.00 0.00 0.00 5.10
118 119 3.899734 TGTGGTGATGAAATTTTGCGAG 58.100 40.909 0.00 0.00 0.00 5.03
119 120 2.663119 GTGGTGATGAAATTTTGCGAGC 59.337 45.455 0.00 0.00 0.00 5.03
120 121 2.557924 TGGTGATGAAATTTTGCGAGCT 59.442 40.909 0.00 0.00 0.00 4.09
121 122 3.755905 TGGTGATGAAATTTTGCGAGCTA 59.244 39.130 0.00 0.00 0.00 3.32
122 123 4.398988 TGGTGATGAAATTTTGCGAGCTAT 59.601 37.500 0.00 0.00 0.00 2.97
123 124 4.972440 GGTGATGAAATTTTGCGAGCTATC 59.028 41.667 0.00 0.00 0.00 2.08
124 125 5.449041 GGTGATGAAATTTTGCGAGCTATCA 60.449 40.000 0.00 0.00 0.00 2.15
125 126 6.029607 GTGATGAAATTTTGCGAGCTATCAA 58.970 36.000 0.00 0.00 0.00 2.57
126 127 6.527722 GTGATGAAATTTTGCGAGCTATCAAA 59.472 34.615 8.33 8.33 0.00 2.69
127 128 7.062138 GTGATGAAATTTTGCGAGCTATCAAAA 59.938 33.333 20.81 20.81 43.55 2.44
128 129 6.689178 TGAAATTTTGCGAGCTATCAAAAC 57.311 33.333 20.90 12.86 42.62 2.43
129 130 6.212235 TGAAATTTTGCGAGCTATCAAAACA 58.788 32.000 20.90 14.57 42.62 2.83
130 131 6.867816 TGAAATTTTGCGAGCTATCAAAACAT 59.132 30.769 20.90 15.05 42.62 2.71
131 132 7.384660 TGAAATTTTGCGAGCTATCAAAACATT 59.615 29.630 20.90 18.62 42.62 2.71
132 133 7.656707 AATTTTGCGAGCTATCAAAACATTT 57.343 28.000 20.90 12.73 42.62 2.32
133 134 6.450845 TTTTGCGAGCTATCAAAACATTTG 57.549 33.333 16.90 0.00 37.29 2.32
134 135 4.764679 TGCGAGCTATCAAAACATTTGT 57.235 36.364 3.06 0.00 0.00 2.83
135 136 4.722194 TGCGAGCTATCAAAACATTTGTC 58.278 39.130 3.06 0.00 0.00 3.18
136 137 4.215185 TGCGAGCTATCAAAACATTTGTCA 59.785 37.500 3.06 0.00 0.00 3.58
137 138 5.153513 GCGAGCTATCAAAACATTTGTCAA 58.846 37.500 3.06 0.00 0.00 3.18
138 139 5.629020 GCGAGCTATCAAAACATTTGTCAAA 59.371 36.000 0.00 0.00 0.00 2.69
139 140 6.183359 GCGAGCTATCAAAACATTTGTCAAAG 60.183 38.462 4.03 0.00 0.00 2.77
140 141 6.857964 CGAGCTATCAAAACATTTGTCAAAGT 59.142 34.615 4.03 0.09 0.00 2.66
141 142 7.379529 CGAGCTATCAAAACATTTGTCAAAGTT 59.620 33.333 4.03 5.89 0.00 2.66
142 143 8.947055 AGCTATCAAAACATTTGTCAAAGTTT 57.053 26.923 14.74 14.74 35.87 2.66
143 144 9.034544 AGCTATCAAAACATTTGTCAAAGTTTC 57.965 29.630 18.13 10.13 33.45 2.78
144 145 8.816144 GCTATCAAAACATTTGTCAAAGTTTCA 58.184 29.630 18.13 12.32 33.45 2.69
156 157 9.581289 TTTGTCAAAGTTTCATAAATAGAGGGA 57.419 29.630 0.00 0.00 0.00 4.20
157 158 8.792830 TGTCAAAGTTTCATAAATAGAGGGAG 57.207 34.615 0.00 0.00 0.00 4.30
158 159 8.602424 TGTCAAAGTTTCATAAATAGAGGGAGA 58.398 33.333 0.00 0.00 0.00 3.71
159 160 9.103861 GTCAAAGTTTCATAAATAGAGGGAGAG 57.896 37.037 0.00 0.00 0.00 3.20
160 161 8.267894 TCAAAGTTTCATAAATAGAGGGAGAGG 58.732 37.037 0.00 0.00 0.00 3.69
161 162 7.996758 AAGTTTCATAAATAGAGGGAGAGGA 57.003 36.000 0.00 0.00 0.00 3.71
162 163 7.610580 AGTTTCATAAATAGAGGGAGAGGAG 57.389 40.000 0.00 0.00 0.00 3.69
163 164 7.366226 AGTTTCATAAATAGAGGGAGAGGAGA 58.634 38.462 0.00 0.00 0.00 3.71
164 165 7.508977 AGTTTCATAAATAGAGGGAGAGGAGAG 59.491 40.741 0.00 0.00 0.00 3.20
165 166 5.898120 TCATAAATAGAGGGAGAGGAGAGG 58.102 45.833 0.00 0.00 0.00 3.69
166 167 3.628832 AAATAGAGGGAGAGGAGAGGG 57.371 52.381 0.00 0.00 0.00 4.30
167 168 2.542257 ATAGAGGGAGAGGAGAGGGA 57.458 55.000 0.00 0.00 0.00 4.20
168 169 1.525175 TAGAGGGAGAGGAGAGGGAC 58.475 60.000 0.00 0.00 0.00 4.46
169 170 1.231928 GAGGGAGAGGAGAGGGACC 59.768 68.421 0.00 0.00 0.00 4.46
170 171 2.123640 GGGAGAGGAGAGGGACCG 60.124 72.222 0.00 0.00 0.00 4.79
171 172 2.691779 GGGAGAGGAGAGGGACCGA 61.692 68.421 0.00 0.00 0.00 4.69
172 173 1.152839 GGAGAGGAGAGGGACCGAG 60.153 68.421 0.00 0.00 0.00 4.63
173 174 1.152839 GAGAGGAGAGGGACCGAGG 60.153 68.421 0.00 0.00 0.00 4.63
174 175 2.123640 GAGGAGAGGGACCGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
175 176 2.617538 AGGAGAGGGACCGAGGGA 60.618 66.667 0.00 0.00 0.00 4.20
176 177 2.123640 GGAGAGGGACCGAGGGAG 60.124 72.222 0.00 0.00 0.00 4.30
177 178 2.123640 GAGAGGGACCGAGGGAGG 60.124 72.222 0.00 0.00 37.30 4.30
178 179 3.742248 GAGAGGGACCGAGGGAGGG 62.742 73.684 0.00 0.00 35.02 4.30
179 180 4.077180 GAGGGACCGAGGGAGGGT 62.077 72.222 0.00 0.00 41.48 4.34
184 185 3.003763 ACCGAGGGAGGGTCAAGC 61.004 66.667 0.00 0.00 29.94 4.01
185 186 2.685380 CCGAGGGAGGGTCAAGCT 60.685 66.667 0.00 0.00 0.00 3.74
186 187 2.581354 CGAGGGAGGGTCAAGCTG 59.419 66.667 0.00 0.00 0.00 4.24
187 188 2.993853 GAGGGAGGGTCAAGCTGG 59.006 66.667 0.00 0.00 0.00 4.85
188 189 1.613630 GAGGGAGGGTCAAGCTGGA 60.614 63.158 0.00 0.00 0.00 3.86
189 190 1.614824 AGGGAGGGTCAAGCTGGAG 60.615 63.158 0.00 0.00 0.00 3.86
190 191 1.613630 GGGAGGGTCAAGCTGGAGA 60.614 63.158 0.00 0.00 0.00 3.71
191 192 1.201429 GGGAGGGTCAAGCTGGAGAA 61.201 60.000 0.00 0.00 0.00 2.87
192 193 0.915364 GGAGGGTCAAGCTGGAGAAT 59.085 55.000 0.00 0.00 0.00 2.40
193 194 1.407989 GGAGGGTCAAGCTGGAGAATG 60.408 57.143 0.00 0.00 0.00 2.67
194 195 0.034670 AGGGTCAAGCTGGAGAATGC 60.035 55.000 0.00 0.00 0.00 3.56
195 196 1.034292 GGGTCAAGCTGGAGAATGCC 61.034 60.000 0.00 0.00 0.00 4.40
196 197 1.034292 GGTCAAGCTGGAGAATGCCC 61.034 60.000 0.00 0.00 0.00 5.36
197 198 1.034292 GTCAAGCTGGAGAATGCCCC 61.034 60.000 0.00 0.00 0.00 5.80
198 199 1.210204 TCAAGCTGGAGAATGCCCCT 61.210 55.000 0.00 0.00 0.00 4.79
199 200 0.750911 CAAGCTGGAGAATGCCCCTC 60.751 60.000 0.00 0.00 0.00 4.30
200 201 1.210204 AAGCTGGAGAATGCCCCTCA 61.210 55.000 0.00 0.00 32.48 3.86
201 202 0.992431 AGCTGGAGAATGCCCCTCAT 60.992 55.000 0.00 0.00 36.87 2.90
202 203 0.822532 GCTGGAGAATGCCCCTCATG 60.823 60.000 0.00 0.00 35.13 3.07
203 204 0.178998 CTGGAGAATGCCCCTCATGG 60.179 60.000 0.00 0.00 35.13 3.66
212 213 2.803203 CCCCTCATGGCATCACTTG 58.197 57.895 0.00 0.00 0.00 3.16
213 214 0.033796 CCCCTCATGGCATCACTTGT 60.034 55.000 0.00 0.00 0.00 3.16
214 215 1.100510 CCCTCATGGCATCACTTGTG 58.899 55.000 0.00 0.00 0.00 3.33
215 216 1.100510 CCTCATGGCATCACTTGTGG 58.899 55.000 0.00 0.00 0.00 4.17
216 217 1.100510 CTCATGGCATCACTTGTGGG 58.899 55.000 0.00 0.00 0.00 4.61
217 218 0.697658 TCATGGCATCACTTGTGGGA 59.302 50.000 0.00 0.00 0.00 4.37
218 219 1.100510 CATGGCATCACTTGTGGGAG 58.899 55.000 0.00 0.00 0.00 4.30
219 220 0.033796 ATGGCATCACTTGTGGGAGG 60.034 55.000 0.00 0.00 0.00 4.30
220 221 1.133181 TGGCATCACTTGTGGGAGGA 61.133 55.000 0.64 0.00 0.00 3.71
221 222 0.257039 GGCATCACTTGTGGGAGGAT 59.743 55.000 0.64 0.00 0.00 3.24
222 223 1.386533 GCATCACTTGTGGGAGGATG 58.613 55.000 0.64 0.00 38.64 3.51
223 224 1.340405 GCATCACTTGTGGGAGGATGT 60.340 52.381 0.00 0.00 38.06 3.06
224 225 2.092968 GCATCACTTGTGGGAGGATGTA 60.093 50.000 0.00 0.00 38.06 2.29
225 226 3.801698 CATCACTTGTGGGAGGATGTAG 58.198 50.000 0.64 0.00 32.68 2.74
226 227 1.555075 TCACTTGTGGGAGGATGTAGC 59.445 52.381 0.64 0.00 0.00 3.58
227 228 1.278985 CACTTGTGGGAGGATGTAGCA 59.721 52.381 0.00 0.00 0.00 3.49
228 229 1.556911 ACTTGTGGGAGGATGTAGCAG 59.443 52.381 0.00 0.00 0.00 4.24
229 230 0.253044 TTGTGGGAGGATGTAGCAGC 59.747 55.000 0.00 0.00 0.00 5.25
230 231 0.909133 TGTGGGAGGATGTAGCAGCA 60.909 55.000 0.00 0.00 0.00 4.41
231 232 0.471617 GTGGGAGGATGTAGCAGCAT 59.528 55.000 0.00 0.00 0.00 3.79
232 233 0.761187 TGGGAGGATGTAGCAGCATC 59.239 55.000 10.81 10.81 43.22 3.91
233 234 1.055040 GGGAGGATGTAGCAGCATCT 58.945 55.000 16.48 6.41 43.41 2.90
234 235 1.270732 GGGAGGATGTAGCAGCATCTG 60.271 57.143 16.48 0.00 43.41 2.90
235 236 1.415659 GGAGGATGTAGCAGCATCTGT 59.584 52.381 16.48 7.63 43.41 3.41
236 237 2.481854 GAGGATGTAGCAGCATCTGTG 58.518 52.381 16.48 0.00 43.41 3.66
237 238 1.140452 AGGATGTAGCAGCATCTGTGG 59.860 52.381 16.48 0.00 43.41 4.17
238 239 1.590932 GATGTAGCAGCATCTGTGGG 58.409 55.000 11.68 0.00 41.35 4.61
239 240 0.182061 ATGTAGCAGCATCTGTGGGG 59.818 55.000 0.00 0.00 33.43 4.96
240 241 1.153086 GTAGCAGCATCTGTGGGGG 60.153 63.158 0.00 0.00 33.43 5.40
241 242 1.306911 TAGCAGCATCTGTGGGGGA 60.307 57.895 0.00 0.00 33.43 4.81
242 243 0.695462 TAGCAGCATCTGTGGGGGAT 60.695 55.000 0.00 0.00 33.43 3.85
243 244 1.076485 GCAGCATCTGTGGGGGATT 60.076 57.895 0.00 0.00 33.43 3.01
244 245 1.389609 GCAGCATCTGTGGGGGATTG 61.390 60.000 0.00 0.00 33.43 2.67
245 246 0.033796 CAGCATCTGTGGGGGATTGT 60.034 55.000 0.00 0.00 0.00 2.71
246 247 1.212688 CAGCATCTGTGGGGGATTGTA 59.787 52.381 0.00 0.00 0.00 2.41
247 248 1.492176 AGCATCTGTGGGGGATTGTAG 59.508 52.381 0.00 0.00 0.00 2.74
248 249 1.972872 CATCTGTGGGGGATTGTAGC 58.027 55.000 0.00 0.00 0.00 3.58
249 250 1.212688 CATCTGTGGGGGATTGTAGCA 59.787 52.381 0.00 0.00 0.00 3.49
250 251 1.367346 TCTGTGGGGGATTGTAGCAA 58.633 50.000 0.00 0.00 0.00 3.91
251 252 1.707989 TCTGTGGGGGATTGTAGCAAA 59.292 47.619 0.00 0.00 0.00 3.68
252 253 2.311542 TCTGTGGGGGATTGTAGCAAAT 59.688 45.455 0.00 0.00 0.00 2.32
253 254 3.099141 CTGTGGGGGATTGTAGCAAATT 58.901 45.455 0.00 0.00 0.00 1.82
254 255 2.830923 TGTGGGGGATTGTAGCAAATTG 59.169 45.455 0.00 0.00 0.00 2.32
255 256 1.830477 TGGGGGATTGTAGCAAATTGC 59.170 47.619 10.41 10.41 45.46 3.56
267 268 3.216147 GCAAATTGCGACTATGGTTGT 57.784 42.857 0.90 0.00 31.71 3.32
268 269 4.349663 GCAAATTGCGACTATGGTTGTA 57.650 40.909 0.90 0.00 31.71 2.41
269 270 4.342772 GCAAATTGCGACTATGGTTGTAG 58.657 43.478 0.90 0.00 31.71 2.74
270 271 4.342772 CAAATTGCGACTATGGTTGTAGC 58.657 43.478 0.00 0.00 36.75 3.58
271 272 2.753055 TTGCGACTATGGTTGTAGCA 57.247 45.000 0.00 0.00 42.48 3.49
272 273 2.293677 TGCGACTATGGTTGTAGCAG 57.706 50.000 0.00 0.00 40.15 4.24
273 274 1.548719 TGCGACTATGGTTGTAGCAGT 59.451 47.619 0.00 0.00 40.15 4.40
274 275 2.028476 TGCGACTATGGTTGTAGCAGTT 60.028 45.455 0.00 0.00 40.15 3.16
275 276 3.000727 GCGACTATGGTTGTAGCAGTTT 58.999 45.455 0.00 0.00 36.36 2.66
276 277 3.062234 GCGACTATGGTTGTAGCAGTTTC 59.938 47.826 0.00 0.00 36.36 2.78
277 278 4.242475 CGACTATGGTTGTAGCAGTTTCA 58.758 43.478 0.00 0.00 0.00 2.69
577 578 4.508065 AGGGGAAGGGATGAGTGG 57.492 61.111 0.00 0.00 0.00 4.00
578 579 1.797472 AGGGGAAGGGATGAGTGGA 59.203 57.895 0.00 0.00 0.00 4.02
579 580 0.327000 AGGGGAAGGGATGAGTGGAG 60.327 60.000 0.00 0.00 0.00 3.86
580 581 1.348775 GGGGAAGGGATGAGTGGAGG 61.349 65.000 0.00 0.00 0.00 4.30
581 582 0.326618 GGGAAGGGATGAGTGGAGGA 60.327 60.000 0.00 0.00 0.00 3.71
582 583 1.127343 GGAAGGGATGAGTGGAGGAG 58.873 60.000 0.00 0.00 0.00 3.69
583 584 1.343478 GGAAGGGATGAGTGGAGGAGA 60.343 57.143 0.00 0.00 0.00 3.71
584 585 2.472029 GAAGGGATGAGTGGAGGAGAA 58.528 52.381 0.00 0.00 0.00 2.87
585 586 2.649742 AGGGATGAGTGGAGGAGAAA 57.350 50.000 0.00 0.00 0.00 2.52
586 587 2.476199 AGGGATGAGTGGAGGAGAAAG 58.524 52.381 0.00 0.00 0.00 2.62
587 588 1.134250 GGGATGAGTGGAGGAGAAAGC 60.134 57.143 0.00 0.00 0.00 3.51
588 589 1.836802 GGATGAGTGGAGGAGAAAGCT 59.163 52.381 0.00 0.00 0.00 3.74
589 590 3.034635 GGATGAGTGGAGGAGAAAGCTA 58.965 50.000 0.00 0.00 0.00 3.32
590 591 3.181470 GGATGAGTGGAGGAGAAAGCTAC 60.181 52.174 0.00 0.00 0.00 3.58
591 592 2.889512 TGAGTGGAGGAGAAAGCTACA 58.110 47.619 0.00 0.00 0.00 2.74
592 593 2.828520 TGAGTGGAGGAGAAAGCTACAG 59.171 50.000 0.00 0.00 0.00 2.74
593 594 3.093057 GAGTGGAGGAGAAAGCTACAGA 58.907 50.000 0.00 0.00 0.00 3.41
594 595 3.096092 AGTGGAGGAGAAAGCTACAGAG 58.904 50.000 0.00 0.00 0.00 3.35
595 596 3.093057 GTGGAGGAGAAAGCTACAGAGA 58.907 50.000 0.00 0.00 0.00 3.10
596 597 3.511934 GTGGAGGAGAAAGCTACAGAGAA 59.488 47.826 0.00 0.00 0.00 2.87
597 598 4.021016 GTGGAGGAGAAAGCTACAGAGAAA 60.021 45.833 0.00 0.00 0.00 2.52
598 599 4.593206 TGGAGGAGAAAGCTACAGAGAAAA 59.407 41.667 0.00 0.00 0.00 2.29
599 600 5.175127 GGAGGAGAAAGCTACAGAGAAAAG 58.825 45.833 0.00 0.00 0.00 2.27
600 601 5.046950 GGAGGAGAAAGCTACAGAGAAAAGA 60.047 44.000 0.00 0.00 0.00 2.52
601 602 6.351796 GGAGGAGAAAGCTACAGAGAAAAGAT 60.352 42.308 0.00 0.00 0.00 2.40
602 603 7.147811 GGAGGAGAAAGCTACAGAGAAAAGATA 60.148 40.741 0.00 0.00 0.00 1.98
603 604 8.140112 AGGAGAAAGCTACAGAGAAAAGATAA 57.860 34.615 0.00 0.00 0.00 1.75
604 605 8.257306 AGGAGAAAGCTACAGAGAAAAGATAAG 58.743 37.037 0.00 0.00 0.00 1.73
605 606 8.254508 GGAGAAAGCTACAGAGAAAAGATAAGA 58.745 37.037 0.00 0.00 0.00 2.10
606 607 9.301153 GAGAAAGCTACAGAGAAAAGATAAGAG 57.699 37.037 0.00 0.00 0.00 2.85
607 608 9.030452 AGAAAGCTACAGAGAAAAGATAAGAGA 57.970 33.333 0.00 0.00 0.00 3.10
608 609 9.646427 GAAAGCTACAGAGAAAAGATAAGAGAA 57.354 33.333 0.00 0.00 0.00 2.87
609 610 9.651913 AAAGCTACAGAGAAAAGATAAGAGAAG 57.348 33.333 0.00 0.00 0.00 2.85
610 611 8.361169 AGCTACAGAGAAAAGATAAGAGAAGT 57.639 34.615 0.00 0.00 0.00 3.01
611 612 9.469097 AGCTACAGAGAAAAGATAAGAGAAGTA 57.531 33.333 0.00 0.00 0.00 2.24
617 618 9.430623 AGAGAAAAGATAAGAGAAGTAAAGTGC 57.569 33.333 0.00 0.00 0.00 4.40
618 619 8.245701 AGAAAAGATAAGAGAAGTAAAGTGCG 57.754 34.615 0.00 0.00 0.00 5.34
619 620 7.873505 AGAAAAGATAAGAGAAGTAAAGTGCGT 59.126 33.333 0.00 0.00 0.00 5.24
620 621 6.952935 AAGATAAGAGAAGTAAAGTGCGTG 57.047 37.500 0.00 0.00 0.00 5.34
621 622 5.411781 AGATAAGAGAAGTAAAGTGCGTGG 58.588 41.667 0.00 0.00 0.00 4.94
622 623 2.457366 AGAGAAGTAAAGTGCGTGGG 57.543 50.000 0.00 0.00 0.00 4.61
623 624 0.796927 GAGAAGTAAAGTGCGTGGGC 59.203 55.000 0.00 0.00 40.52 5.36
624 625 0.396811 AGAAGTAAAGTGCGTGGGCT 59.603 50.000 0.00 0.00 40.82 5.19
625 626 1.621814 AGAAGTAAAGTGCGTGGGCTA 59.378 47.619 0.00 0.00 40.82 3.93
626 627 2.000447 GAAGTAAAGTGCGTGGGCTAG 59.000 52.381 0.00 0.00 40.82 3.42
627 628 1.263356 AGTAAAGTGCGTGGGCTAGA 58.737 50.000 0.00 0.00 40.82 2.43
628 629 1.621814 AGTAAAGTGCGTGGGCTAGAA 59.378 47.619 0.00 0.00 40.82 2.10
629 630 2.038033 AGTAAAGTGCGTGGGCTAGAAA 59.962 45.455 0.00 0.00 40.82 2.52
630 631 1.975660 AAAGTGCGTGGGCTAGAAAA 58.024 45.000 0.00 0.00 40.82 2.29
631 632 1.975660 AAGTGCGTGGGCTAGAAAAA 58.024 45.000 0.00 0.00 40.82 1.94
648 649 3.813529 AAAAAGTATGAGTGCGCTGTC 57.186 42.857 3.44 5.72 0.00 3.51
649 650 2.751166 AAAGTATGAGTGCGCTGTCT 57.249 45.000 3.44 4.31 0.00 3.41
650 651 2.285827 AAGTATGAGTGCGCTGTCTC 57.714 50.000 3.44 14.17 0.00 3.36
651 652 0.457851 AGTATGAGTGCGCTGTCTCC 59.542 55.000 3.44 2.26 0.00 3.71
652 653 0.457851 GTATGAGTGCGCTGTCTCCT 59.542 55.000 3.44 9.49 0.00 3.69
653 654 0.457443 TATGAGTGCGCTGTCTCCTG 59.543 55.000 3.44 0.00 0.00 3.86
654 655 2.125753 GAGTGCGCTGTCTCCTGG 60.126 66.667 3.44 0.00 0.00 4.45
655 656 2.919856 AGTGCGCTGTCTCCTGGT 60.920 61.111 9.73 0.00 0.00 4.00
656 657 2.433318 GTGCGCTGTCTCCTGGTC 60.433 66.667 9.73 0.00 0.00 4.02
657 658 4.056125 TGCGCTGTCTCCTGGTCG 62.056 66.667 9.73 0.00 0.00 4.79
658 659 4.057428 GCGCTGTCTCCTGGTCGT 62.057 66.667 0.00 0.00 0.00 4.34
659 660 2.697761 GCGCTGTCTCCTGGTCGTA 61.698 63.158 0.00 0.00 0.00 3.43
660 661 1.136984 CGCTGTCTCCTGGTCGTAC 59.863 63.158 0.00 0.00 0.00 3.67
661 662 1.136984 GCTGTCTCCTGGTCGTACG 59.863 63.158 9.53 9.53 0.00 3.67
662 663 1.303799 GCTGTCTCCTGGTCGTACGA 61.304 60.000 15.28 15.28 0.00 3.43
663 664 1.380524 CTGTCTCCTGGTCGTACGAT 58.619 55.000 22.57 0.00 0.00 3.73
664 665 1.331138 CTGTCTCCTGGTCGTACGATC 59.669 57.143 22.57 22.05 0.00 3.69
665 666 0.662085 GTCTCCTGGTCGTACGATCC 59.338 60.000 24.91 23.36 0.00 3.36
666 667 0.253894 TCTCCTGGTCGTACGATCCA 59.746 55.000 24.91 26.05 0.00 3.41
667 668 0.663688 CTCCTGGTCGTACGATCCAG 59.336 60.000 35.22 35.22 45.67 3.86
668 669 0.034767 TCCTGGTCGTACGATCCAGT 60.035 55.000 36.77 0.00 44.92 4.00
669 670 0.815734 CCTGGTCGTACGATCCAGTT 59.184 55.000 36.77 0.00 44.92 3.16
670 671 1.469251 CCTGGTCGTACGATCCAGTTG 60.469 57.143 36.77 28.02 44.92 3.16
671 672 0.528924 TGGTCGTACGATCCAGTTGG 59.471 55.000 24.91 0.00 0.00 3.77
680 681 2.264480 TCCAGTTGGATCGCGTGG 59.736 61.111 5.77 4.39 39.78 4.94
681 682 3.499737 CCAGTTGGATCGCGTGGC 61.500 66.667 5.77 0.00 37.39 5.01
682 683 3.499737 CAGTTGGATCGCGTGGCC 61.500 66.667 5.77 6.86 0.00 5.36
683 684 4.778143 AGTTGGATCGCGTGGCCC 62.778 66.667 5.77 3.91 0.00 5.80
706 707 4.072088 CGTCTGGCGCAACGGTTC 62.072 66.667 10.83 0.00 35.32 3.62
707 708 4.072088 GTCTGGCGCAACGGTTCG 62.072 66.667 10.83 0.00 0.00 3.95
731 732 2.895372 GCGCCGGATGGAAACGAT 60.895 61.111 5.05 0.00 37.49 3.73
732 733 2.469516 GCGCCGGATGGAAACGATT 61.470 57.895 5.05 0.00 37.49 3.34
733 734 1.641677 CGCCGGATGGAAACGATTC 59.358 57.895 5.05 0.00 37.49 2.52
749 750 8.788409 GAAACGATTCCCTTTATTCATTCATC 57.212 34.615 0.00 0.00 0.00 2.92
750 751 7.880160 AACGATTCCCTTTATTCATTCATCA 57.120 32.000 0.00 0.00 0.00 3.07
751 752 7.880160 ACGATTCCCTTTATTCATTCATCAA 57.120 32.000 0.00 0.00 0.00 2.57
752 753 8.292444 ACGATTCCCTTTATTCATTCATCAAA 57.708 30.769 0.00 0.00 0.00 2.69
753 754 8.748412 ACGATTCCCTTTATTCATTCATCAAAA 58.252 29.630 0.00 0.00 0.00 2.44
754 755 9.754382 CGATTCCCTTTATTCATTCATCAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
787 788 0.812412 TTGGCGCCGGAAGCTAATAC 60.812 55.000 23.90 5.66 40.39 1.89
814 815 3.218453 TGGGCTCGATTTGAACTTTCAA 58.782 40.909 0.07 0.07 44.78 2.69
830 831 9.036671 TGAACTTTCAAAAAGAAAAGAAAACGT 57.963 25.926 6.44 0.00 45.11 3.99
831 832 9.858247 GAACTTTCAAAAAGAAAAGAAAACGTT 57.142 25.926 6.44 0.00 45.11 3.99
832 833 9.644993 AACTTTCAAAAAGAAAAGAAAACGTTG 57.355 25.926 0.00 0.00 45.11 4.10
833 834 8.279800 ACTTTCAAAAAGAAAAGAAAACGTTGG 58.720 29.630 0.00 0.00 45.11 3.77
834 835 6.713792 TCAAAAAGAAAAGAAAACGTTGGG 57.286 33.333 0.00 0.00 0.00 4.12
835 836 5.639931 TCAAAAAGAAAAGAAAACGTTGGGG 59.360 36.000 0.00 0.00 0.00 4.96
839 852 3.958147 AGAAAAGAAAACGTTGGGGTGAT 59.042 39.130 0.00 0.00 0.00 3.06
843 856 2.884639 AGAAAACGTTGGGGTGATTGAG 59.115 45.455 0.00 0.00 0.00 3.02
856 869 2.098117 GTGATTGAGAAGGCCCATTTCG 59.902 50.000 0.00 0.00 0.00 3.46
915 928 3.065371 AGTTTTGCTTTCACCTTCACGAG 59.935 43.478 0.00 0.00 0.00 4.18
916 929 2.325583 TTGCTTTCACCTTCACGAGT 57.674 45.000 0.00 0.00 0.00 4.18
917 930 1.865865 TGCTTTCACCTTCACGAGTC 58.134 50.000 0.00 0.00 0.00 3.36
918 931 1.412710 TGCTTTCACCTTCACGAGTCT 59.587 47.619 0.00 0.00 0.00 3.24
919 932 2.062519 GCTTTCACCTTCACGAGTCTC 58.937 52.381 0.00 0.00 0.00 3.36
920 933 2.288518 GCTTTCACCTTCACGAGTCTCT 60.289 50.000 0.00 0.00 0.00 3.10
921 934 3.570559 CTTTCACCTTCACGAGTCTCTC 58.429 50.000 0.00 0.00 0.00 3.20
922 935 2.570415 TCACCTTCACGAGTCTCTCT 57.430 50.000 0.00 0.00 0.00 3.10
923 936 2.428491 TCACCTTCACGAGTCTCTCTC 58.572 52.381 0.00 0.00 39.62 3.20
932 945 2.256445 GAGTCTCTCTCGCAGTTGTC 57.744 55.000 0.00 0.00 33.25 3.18
933 946 1.810151 GAGTCTCTCTCGCAGTTGTCT 59.190 52.381 0.00 0.00 33.25 3.41
934 947 1.810151 AGTCTCTCTCGCAGTTGTCTC 59.190 52.381 0.00 0.00 0.00 3.36
935 948 1.537638 GTCTCTCTCGCAGTTGTCTCA 59.462 52.381 0.00 0.00 0.00 3.27
936 949 2.030717 GTCTCTCTCGCAGTTGTCTCAA 60.031 50.000 0.00 0.00 0.00 3.02
937 950 2.623416 TCTCTCTCGCAGTTGTCTCAAA 59.377 45.455 0.00 0.00 0.00 2.69
938 951 3.068165 TCTCTCTCGCAGTTGTCTCAAAA 59.932 43.478 0.00 0.00 0.00 2.44
939 952 3.792401 TCTCTCGCAGTTGTCTCAAAAA 58.208 40.909 0.00 0.00 0.00 1.94
962 975 1.846007 AGAGTCTCTCTCGCACCAAT 58.154 50.000 0.00 0.00 46.86 3.16
967 980 2.125552 CTCTCGCACCAATCGGCA 60.126 61.111 0.00 0.00 34.57 5.69
978 991 1.745489 AATCGGCAGCTCGTTTCCC 60.745 57.895 0.00 0.00 0.00 3.97
1701 1733 0.747283 GCTCTGGGATGTTCAGGCAG 60.747 60.000 0.00 0.00 32.55 4.85
1925 1960 1.872952 TCGGTTGACATTGCTCACTTG 59.127 47.619 0.00 0.00 0.00 3.16
2180 2216 9.974980 ACCAGTATGAAATTTCGTAACATTTTT 57.025 25.926 19.31 1.43 39.69 1.94
2203 2239 5.125356 TGCTCTTTGTGTGAGATTCAAGAA 58.875 37.500 0.00 0.00 33.68 2.52
2233 2269 0.528924 CACATGTGGTGGCTTCCATG 59.471 55.000 18.51 0.00 44.04 3.66
2246 2282 2.486907 GCTTCCATGAGCTAAGCTGGAT 60.487 50.000 10.31 0.00 39.88 3.41
2323 2359 2.924757 TGGCTGATTGATCTAGGCAG 57.075 50.000 12.26 8.13 41.33 4.85
2436 2473 8.582433 GAAGTAGTCTTCTATCTATTGTTGGC 57.418 38.462 1.37 0.00 44.58 4.52
2457 2494 3.947834 GCACCTTGCCTTGATGTAGTAAT 59.052 43.478 0.00 0.00 37.42 1.89
2498 2535 2.095768 CCTGCAAGTATGACACGTTTGG 60.096 50.000 0.00 0.00 0.00 3.28
2556 2593 9.155975 GCAAAGAAGAGTGAAATACTTCTATCA 57.844 33.333 0.00 0.00 46.03 2.15
2701 2738 2.092484 TCTTGCTAGCATGCATGGGTTA 60.092 45.455 27.34 4.71 42.96 2.85
2757 2794 2.975851 GCTTCTGTTGAGCAAATGAACG 59.024 45.455 0.00 0.00 0.00 3.95
2763 2800 6.394809 TCTGTTGAGCAAATGAACGATACTA 58.605 36.000 0.00 0.00 0.00 1.82
2775 2812 4.081917 TGAACGATACTACACTGATGGCAA 60.082 41.667 0.00 0.00 0.00 4.52
2776 2813 4.672587 ACGATACTACACTGATGGCAAT 57.327 40.909 0.00 0.00 0.00 3.56
2793 2830 3.434739 GGCAATCCCATCTTCAGATCTGT 60.435 47.826 21.92 0.00 31.21 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.435784 GCATTTTGGAGCATCAATTTTGTTTTT 59.564 29.630 0.00 0.00 36.25 1.94
7 8 6.919115 GCATTTTGGAGCATCAATTTTGTTTT 59.081 30.769 0.00 0.00 36.25 2.43
8 9 6.440436 GCATTTTGGAGCATCAATTTTGTTT 58.560 32.000 0.00 0.00 36.25 2.83
9 10 5.334260 CGCATTTTGGAGCATCAATTTTGTT 60.334 36.000 0.00 0.00 36.25 2.83
10 11 4.152759 CGCATTTTGGAGCATCAATTTTGT 59.847 37.500 0.00 0.00 36.25 2.83
11 12 4.152759 ACGCATTTTGGAGCATCAATTTTG 59.847 37.500 0.00 0.00 36.25 2.44
12 13 4.317488 ACGCATTTTGGAGCATCAATTTT 58.683 34.783 0.00 0.00 36.25 1.82
13 14 3.929094 ACGCATTTTGGAGCATCAATTT 58.071 36.364 0.00 0.00 36.25 1.82
14 15 3.598019 ACGCATTTTGGAGCATCAATT 57.402 38.095 0.00 0.00 36.25 2.32
15 16 3.598019 AACGCATTTTGGAGCATCAAT 57.402 38.095 0.00 0.00 36.25 2.57
16 17 3.058450 CAAACGCATTTTGGAGCATCAA 58.942 40.909 0.66 0.00 40.98 2.57
17 18 2.295629 TCAAACGCATTTTGGAGCATCA 59.704 40.909 7.70 0.00 44.30 3.07
18 19 2.945278 TCAAACGCATTTTGGAGCATC 58.055 42.857 7.70 0.00 44.30 3.91
19 20 3.383620 TTCAAACGCATTTTGGAGCAT 57.616 38.095 7.70 0.00 44.30 3.79
20 21 2.879002 TTCAAACGCATTTTGGAGCA 57.121 40.000 7.70 0.00 44.30 4.26
21 22 4.730600 ATTTTCAAACGCATTTTGGAGC 57.269 36.364 7.70 0.00 44.30 4.70
22 23 7.171447 TGTTATTTTCAAACGCATTTTGGAG 57.829 32.000 7.70 0.00 44.30 3.86
23 24 7.721286 ATGTTATTTTCAAACGCATTTTGGA 57.279 28.000 7.70 0.00 44.30 3.53
24 25 8.779603 AAATGTTATTTTCAAACGCATTTTGG 57.220 26.923 7.70 0.00 44.30 3.28
27 28 9.230932 CCAAAAATGTTATTTTCAAACGCATTT 57.769 25.926 0.53 0.00 36.87 2.32
28 29 8.616076 TCCAAAAATGTTATTTTCAAACGCATT 58.384 25.926 0.53 0.00 30.31 3.56
29 30 8.147642 TCCAAAAATGTTATTTTCAAACGCAT 57.852 26.923 0.53 0.00 30.31 4.73
30 31 7.539712 TCCAAAAATGTTATTTTCAAACGCA 57.460 28.000 0.53 0.00 30.31 5.24
31 32 6.573357 GCTCCAAAAATGTTATTTTCAAACGC 59.427 34.615 0.53 0.00 30.31 4.84
32 33 7.625553 TGCTCCAAAAATGTTATTTTCAAACG 58.374 30.769 0.53 0.00 30.31 3.60
33 34 9.597999 GATGCTCCAAAAATGTTATTTTCAAAC 57.402 29.630 0.53 0.00 30.31 2.93
34 35 9.334947 TGATGCTCCAAAAATGTTATTTTCAAA 57.665 25.926 0.53 0.00 30.31 2.69
35 36 8.899427 TGATGCTCCAAAAATGTTATTTTCAA 57.101 26.923 0.53 0.00 30.31 2.69
36 37 8.149647 ACTGATGCTCCAAAAATGTTATTTTCA 58.850 29.630 0.53 0.00 30.31 2.69
37 38 8.538409 ACTGATGCTCCAAAAATGTTATTTTC 57.462 30.769 0.53 0.00 30.31 2.29
38 39 8.907222 AACTGATGCTCCAAAAATGTTATTTT 57.093 26.923 0.00 0.00 32.89 1.82
39 40 8.907222 AAACTGATGCTCCAAAAATGTTATTT 57.093 26.923 0.00 0.00 0.00 1.40
40 41 8.776470 CAAAACTGATGCTCCAAAAATGTTATT 58.224 29.630 0.00 0.00 0.00 1.40
41 42 7.933033 ACAAAACTGATGCTCCAAAAATGTTAT 59.067 29.630 0.00 0.00 0.00 1.89
42 43 7.271511 ACAAAACTGATGCTCCAAAAATGTTA 58.728 30.769 0.00 0.00 0.00 2.41
43 44 6.114767 ACAAAACTGATGCTCCAAAAATGTT 58.885 32.000 0.00 0.00 0.00 2.71
44 45 5.673514 ACAAAACTGATGCTCCAAAAATGT 58.326 33.333 0.00 0.00 0.00 2.71
45 46 6.607735 AACAAAACTGATGCTCCAAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
46 47 7.628769 AAAACAAAACTGATGCTCCAAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
47 48 7.446001 AAAAACAAAACTGATGCTCCAAAAA 57.554 28.000 0.00 0.00 0.00 1.94
79 80 7.495901 TCACCACATGACATTTGTGTAAAAAT 58.504 30.769 0.00 0.00 42.30 1.82
80 81 6.867550 TCACCACATGACATTTGTGTAAAAA 58.132 32.000 0.00 0.00 42.30 1.94
81 82 6.456795 TCACCACATGACATTTGTGTAAAA 57.543 33.333 0.00 0.00 42.30 1.52
82 83 6.264067 TCATCACCACATGACATTTGTGTAAA 59.736 34.615 0.00 0.00 42.30 2.01
83 84 5.767168 TCATCACCACATGACATTTGTGTAA 59.233 36.000 0.00 0.00 42.30 2.41
84 85 5.312079 TCATCACCACATGACATTTGTGTA 58.688 37.500 0.00 0.00 42.30 2.90
85 86 4.143543 TCATCACCACATGACATTTGTGT 58.856 39.130 0.00 0.64 42.30 3.72
86 87 4.769859 TCATCACCACATGACATTTGTG 57.230 40.909 0.00 2.70 41.24 3.33
87 88 5.787953 TTTCATCACCACATGACATTTGT 57.212 34.783 0.00 0.00 41.24 2.83
88 89 7.661127 AAATTTCATCACCACATGACATTTG 57.339 32.000 0.00 0.00 39.80 2.32
89 90 7.308109 GCAAAATTTCATCACCACATGACATTT 60.308 33.333 0.00 2.97 41.65 2.32
90 91 6.148150 GCAAAATTTCATCACCACATGACATT 59.852 34.615 0.00 0.00 41.24 2.71
91 92 5.640357 GCAAAATTTCATCACCACATGACAT 59.360 36.000 0.00 0.00 41.24 3.06
92 93 4.989797 GCAAAATTTCATCACCACATGACA 59.010 37.500 0.00 0.00 41.24 3.58
93 94 4.090354 CGCAAAATTTCATCACCACATGAC 59.910 41.667 0.00 0.00 41.24 3.06
94 95 4.022503 TCGCAAAATTTCATCACCACATGA 60.023 37.500 0.00 0.00 43.13 3.07
95 96 4.236147 TCGCAAAATTTCATCACCACATG 58.764 39.130 0.00 0.00 0.00 3.21
96 97 4.487948 CTCGCAAAATTTCATCACCACAT 58.512 39.130 0.00 0.00 0.00 3.21
97 98 3.856638 GCTCGCAAAATTTCATCACCACA 60.857 43.478 0.00 0.00 0.00 4.17
98 99 2.663119 GCTCGCAAAATTTCATCACCAC 59.337 45.455 0.00 0.00 0.00 4.16
99 100 2.557924 AGCTCGCAAAATTTCATCACCA 59.442 40.909 0.00 0.00 0.00 4.17
100 101 3.221964 AGCTCGCAAAATTTCATCACC 57.778 42.857 0.00 0.00 0.00 4.02
101 102 5.572211 TGATAGCTCGCAAAATTTCATCAC 58.428 37.500 0.00 0.00 0.00 3.06
102 103 5.816449 TGATAGCTCGCAAAATTTCATCA 57.184 34.783 0.00 0.00 0.00 3.07
103 104 7.062138 TGTTTTGATAGCTCGCAAAATTTCATC 59.938 33.333 21.96 12.82 43.37 2.92
104 105 6.867816 TGTTTTGATAGCTCGCAAAATTTCAT 59.132 30.769 21.96 0.00 43.37 2.57
105 106 6.212235 TGTTTTGATAGCTCGCAAAATTTCA 58.788 32.000 21.96 15.50 43.37 2.69
106 107 6.689178 TGTTTTGATAGCTCGCAAAATTTC 57.311 33.333 21.96 13.81 43.37 2.17
107 108 7.656707 AATGTTTTGATAGCTCGCAAAATTT 57.343 28.000 21.96 17.23 43.37 1.82
108 109 7.171337 ACAAATGTTTTGATAGCTCGCAAAATT 59.829 29.630 21.96 14.20 43.37 1.82
109 110 6.646240 ACAAATGTTTTGATAGCTCGCAAAAT 59.354 30.769 21.96 10.35 43.37 1.82
110 111 5.982516 ACAAATGTTTTGATAGCTCGCAAAA 59.017 32.000 17.68 17.68 40.50 2.44
111 112 5.527951 ACAAATGTTTTGATAGCTCGCAAA 58.472 33.333 9.18 9.18 32.63 3.68
112 113 5.119931 ACAAATGTTTTGATAGCTCGCAA 57.880 34.783 6.96 0.00 0.00 4.85
113 114 4.215185 TGACAAATGTTTTGATAGCTCGCA 59.785 37.500 6.96 0.00 0.00 5.10
114 115 4.722194 TGACAAATGTTTTGATAGCTCGC 58.278 39.130 6.96 0.00 0.00 5.03
115 116 6.857964 ACTTTGACAAATGTTTTGATAGCTCG 59.142 34.615 0.05 0.00 0.00 5.03
116 117 8.579682 AACTTTGACAAATGTTTTGATAGCTC 57.420 30.769 0.05 0.00 31.52 4.09
117 118 8.947055 AAACTTTGACAAATGTTTTGATAGCT 57.053 26.923 16.25 0.00 39.38 3.32
118 119 8.816144 TGAAACTTTGACAAATGTTTTGATAGC 58.184 29.630 19.95 12.08 41.29 2.97
130 131 9.581289 TCCCTCTATTTATGAAACTTTGACAAA 57.419 29.630 0.00 0.00 0.00 2.83
131 132 9.231297 CTCCCTCTATTTATGAAACTTTGACAA 57.769 33.333 0.00 0.00 0.00 3.18
132 133 8.602424 TCTCCCTCTATTTATGAAACTTTGACA 58.398 33.333 0.00 0.00 0.00 3.58
133 134 9.103861 CTCTCCCTCTATTTATGAAACTTTGAC 57.896 37.037 0.00 0.00 0.00 3.18
134 135 8.267894 CCTCTCCCTCTATTTATGAAACTTTGA 58.732 37.037 0.00 0.00 0.00 2.69
135 136 8.267894 TCCTCTCCCTCTATTTATGAAACTTTG 58.732 37.037 0.00 0.00 0.00 2.77
136 137 8.393959 TCCTCTCCCTCTATTTATGAAACTTT 57.606 34.615 0.00 0.00 0.00 2.66
137 138 7.846823 TCTCCTCTCCCTCTATTTATGAAACTT 59.153 37.037 0.00 0.00 0.00 2.66
138 139 7.366226 TCTCCTCTCCCTCTATTTATGAAACT 58.634 38.462 0.00 0.00 0.00 2.66
139 140 7.256154 CCTCTCCTCTCCCTCTATTTATGAAAC 60.256 44.444 0.00 0.00 0.00 2.78
140 141 6.784969 CCTCTCCTCTCCCTCTATTTATGAAA 59.215 42.308 0.00 0.00 0.00 2.69
141 142 6.318913 CCTCTCCTCTCCCTCTATTTATGAA 58.681 44.000 0.00 0.00 0.00 2.57
142 143 5.222442 CCCTCTCCTCTCCCTCTATTTATGA 60.222 48.000 0.00 0.00 0.00 2.15
143 144 5.022787 CCCTCTCCTCTCCCTCTATTTATG 58.977 50.000 0.00 0.00 0.00 1.90
144 145 4.929502 TCCCTCTCCTCTCCCTCTATTTAT 59.070 45.833 0.00 0.00 0.00 1.40
145 146 4.106663 GTCCCTCTCCTCTCCCTCTATTTA 59.893 50.000 0.00 0.00 0.00 1.40
146 147 3.116900 GTCCCTCTCCTCTCCCTCTATTT 60.117 52.174 0.00 0.00 0.00 1.40
147 148 2.449345 GTCCCTCTCCTCTCCCTCTATT 59.551 54.545 0.00 0.00 0.00 1.73
148 149 2.070573 GTCCCTCTCCTCTCCCTCTAT 58.929 57.143 0.00 0.00 0.00 1.98
149 150 1.525175 GTCCCTCTCCTCTCCCTCTA 58.475 60.000 0.00 0.00 0.00 2.43
150 151 1.293683 GGTCCCTCTCCTCTCCCTCT 61.294 65.000 0.00 0.00 0.00 3.69
151 152 1.231928 GGTCCCTCTCCTCTCCCTC 59.768 68.421 0.00 0.00 0.00 4.30
152 153 2.695970 CGGTCCCTCTCCTCTCCCT 61.696 68.421 0.00 0.00 0.00 4.20
153 154 2.123640 CGGTCCCTCTCCTCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
154 155 1.152839 CTCGGTCCCTCTCCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
155 156 1.152839 CCTCGGTCCCTCTCCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
156 157 2.695970 CCCTCGGTCCCTCTCCTCT 61.696 68.421 0.00 0.00 0.00 3.69
157 158 2.123640 CCCTCGGTCCCTCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
158 159 2.617538 TCCCTCGGTCCCTCTCCT 60.618 66.667 0.00 0.00 0.00 3.69
159 160 2.123640 CTCCCTCGGTCCCTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
160 161 2.123640 CCTCCCTCGGTCCCTCTC 60.124 72.222 0.00 0.00 0.00 3.20
161 162 3.756783 CCCTCCCTCGGTCCCTCT 61.757 72.222 0.00 0.00 0.00 3.69
162 163 4.077180 ACCCTCCCTCGGTCCCTC 62.077 72.222 0.00 0.00 0.00 4.30
163 164 4.077180 GACCCTCCCTCGGTCCCT 62.077 72.222 0.00 0.00 43.48 4.20
167 168 3.003763 GCTTGACCCTCCCTCGGT 61.004 66.667 0.00 0.00 35.88 4.69
168 169 2.685380 AGCTTGACCCTCCCTCGG 60.685 66.667 0.00 0.00 0.00 4.63
169 170 2.581354 CAGCTTGACCCTCCCTCG 59.419 66.667 0.00 0.00 0.00 4.63
170 171 1.613630 TCCAGCTTGACCCTCCCTC 60.614 63.158 0.00 0.00 0.00 4.30
171 172 1.614824 CTCCAGCTTGACCCTCCCT 60.615 63.158 0.00 0.00 0.00 4.20
172 173 1.201429 TTCTCCAGCTTGACCCTCCC 61.201 60.000 0.00 0.00 0.00 4.30
173 174 0.915364 ATTCTCCAGCTTGACCCTCC 59.085 55.000 0.00 0.00 0.00 4.30
174 175 2.016096 GCATTCTCCAGCTTGACCCTC 61.016 57.143 0.00 0.00 0.00 4.30
175 176 0.034670 GCATTCTCCAGCTTGACCCT 60.035 55.000 0.00 0.00 0.00 4.34
176 177 1.034292 GGCATTCTCCAGCTTGACCC 61.034 60.000 0.00 0.00 0.00 4.46
177 178 1.034292 GGGCATTCTCCAGCTTGACC 61.034 60.000 0.00 0.00 0.00 4.02
178 179 1.034292 GGGGCATTCTCCAGCTTGAC 61.034 60.000 0.00 0.00 0.00 3.18
179 180 1.210204 AGGGGCATTCTCCAGCTTGA 61.210 55.000 0.00 0.00 0.00 3.02
180 181 0.750911 GAGGGGCATTCTCCAGCTTG 60.751 60.000 0.00 0.00 0.00 4.01
181 182 1.210204 TGAGGGGCATTCTCCAGCTT 61.210 55.000 0.00 0.00 0.00 3.74
182 183 0.992431 ATGAGGGGCATTCTCCAGCT 60.992 55.000 0.00 0.00 31.73 4.24
183 184 0.822532 CATGAGGGGCATTCTCCAGC 60.823 60.000 0.00 0.00 34.15 4.85
184 185 0.178998 CCATGAGGGGCATTCTCCAG 60.179 60.000 0.00 0.00 34.15 3.86
185 186 1.925120 CCATGAGGGGCATTCTCCA 59.075 57.895 0.00 0.00 34.15 3.86
186 187 4.916358 CCATGAGGGGCATTCTCC 57.084 61.111 0.00 0.00 34.15 3.71
194 195 0.033796 ACAAGTGATGCCATGAGGGG 60.034 55.000 0.00 0.00 37.04 4.79
195 196 1.100510 CACAAGTGATGCCATGAGGG 58.899 55.000 0.00 0.00 40.85 4.30
196 197 1.100510 CCACAAGTGATGCCATGAGG 58.899 55.000 0.94 0.00 38.23 3.86
197 198 1.100510 CCCACAAGTGATGCCATGAG 58.899 55.000 0.94 0.00 0.00 2.90
198 199 0.697658 TCCCACAAGTGATGCCATGA 59.302 50.000 0.94 0.00 0.00 3.07
199 200 1.100510 CTCCCACAAGTGATGCCATG 58.899 55.000 0.94 0.00 0.00 3.66
200 201 0.033796 CCTCCCACAAGTGATGCCAT 60.034 55.000 0.94 0.00 0.00 4.40
201 202 1.133181 TCCTCCCACAAGTGATGCCA 61.133 55.000 0.94 0.00 0.00 4.92
202 203 0.257039 ATCCTCCCACAAGTGATGCC 59.743 55.000 0.94 0.00 0.00 4.40
203 204 1.340405 ACATCCTCCCACAAGTGATGC 60.340 52.381 0.94 0.00 37.02 3.91
204 205 2.795231 ACATCCTCCCACAAGTGATG 57.205 50.000 0.94 0.00 38.94 3.07
205 206 2.171448 GCTACATCCTCCCACAAGTGAT 59.829 50.000 0.94 0.00 0.00 3.06
206 207 1.555075 GCTACATCCTCCCACAAGTGA 59.445 52.381 0.94 0.00 0.00 3.41
207 208 1.278985 TGCTACATCCTCCCACAAGTG 59.721 52.381 0.00 0.00 0.00 3.16
208 209 1.556911 CTGCTACATCCTCCCACAAGT 59.443 52.381 0.00 0.00 0.00 3.16
209 210 1.745141 GCTGCTACATCCTCCCACAAG 60.745 57.143 0.00 0.00 0.00 3.16
210 211 0.253044 GCTGCTACATCCTCCCACAA 59.747 55.000 0.00 0.00 0.00 3.33
211 212 0.909133 TGCTGCTACATCCTCCCACA 60.909 55.000 0.00 0.00 0.00 4.17
212 213 0.471617 ATGCTGCTACATCCTCCCAC 59.528 55.000 0.00 0.00 0.00 4.61
213 214 0.761187 GATGCTGCTACATCCTCCCA 59.239 55.000 0.00 0.00 40.52 4.37
214 215 1.055040 AGATGCTGCTACATCCTCCC 58.945 55.000 13.72 0.00 46.29 4.30
215 216 1.415659 ACAGATGCTGCTACATCCTCC 59.584 52.381 13.72 0.00 46.29 4.30
216 217 2.481854 CACAGATGCTGCTACATCCTC 58.518 52.381 13.72 0.00 46.29 3.71
217 218 1.140452 CCACAGATGCTGCTACATCCT 59.860 52.381 13.72 2.30 46.29 3.24
218 219 1.590932 CCACAGATGCTGCTACATCC 58.409 55.000 13.72 0.44 46.29 3.51
219 220 1.590932 CCCACAGATGCTGCTACATC 58.409 55.000 10.47 10.47 45.62 3.06
220 221 0.182061 CCCCACAGATGCTGCTACAT 59.818 55.000 0.00 0.00 34.37 2.29
221 222 1.603842 CCCCACAGATGCTGCTACA 59.396 57.895 0.00 0.00 34.37 2.74
222 223 1.153086 CCCCCACAGATGCTGCTAC 60.153 63.158 0.00 0.00 34.37 3.58
223 224 0.695462 ATCCCCCACAGATGCTGCTA 60.695 55.000 0.00 0.00 34.37 3.49
224 225 1.578215 AATCCCCCACAGATGCTGCT 61.578 55.000 0.00 0.00 34.37 4.24
225 226 1.076485 AATCCCCCACAGATGCTGC 60.076 57.895 0.00 0.00 34.37 5.25
226 227 0.033796 ACAATCCCCCACAGATGCTG 60.034 55.000 0.00 0.00 37.52 4.41
227 228 1.492176 CTACAATCCCCCACAGATGCT 59.508 52.381 0.00 0.00 0.00 3.79
228 229 1.972872 CTACAATCCCCCACAGATGC 58.027 55.000 0.00 0.00 0.00 3.91
229 230 1.212688 TGCTACAATCCCCCACAGATG 59.787 52.381 0.00 0.00 0.00 2.90
230 231 1.595311 TGCTACAATCCCCCACAGAT 58.405 50.000 0.00 0.00 0.00 2.90
231 232 1.367346 TTGCTACAATCCCCCACAGA 58.633 50.000 0.00 0.00 0.00 3.41
232 233 2.214376 TTTGCTACAATCCCCCACAG 57.786 50.000 0.00 0.00 0.00 3.66
233 234 2.830923 CAATTTGCTACAATCCCCCACA 59.169 45.455 0.00 0.00 0.00 4.17
234 235 2.418609 GCAATTTGCTACAATCCCCCAC 60.419 50.000 14.11 0.00 40.96 4.61
235 236 1.830477 GCAATTTGCTACAATCCCCCA 59.170 47.619 14.11 0.00 40.96 4.96
236 237 1.202405 CGCAATTTGCTACAATCCCCC 60.202 52.381 18.57 0.00 42.25 5.40
237 238 1.748493 TCGCAATTTGCTACAATCCCC 59.252 47.619 18.57 0.00 42.25 4.81
238 239 2.423538 AGTCGCAATTTGCTACAATCCC 59.576 45.455 23.09 0.96 40.96 3.85
239 240 3.764885 AGTCGCAATTTGCTACAATCC 57.235 42.857 23.09 1.58 40.96 3.01
240 241 5.207768 CCATAGTCGCAATTTGCTACAATC 58.792 41.667 23.09 7.27 40.96 2.67
241 242 4.640201 ACCATAGTCGCAATTTGCTACAAT 59.360 37.500 23.09 9.92 40.96 2.71
242 243 4.006989 ACCATAGTCGCAATTTGCTACAA 58.993 39.130 23.09 7.17 40.96 2.41
243 244 3.605634 ACCATAGTCGCAATTTGCTACA 58.394 40.909 23.09 12.44 40.96 2.74
244 245 4.142687 ACAACCATAGTCGCAATTTGCTAC 60.143 41.667 18.57 17.22 42.25 3.58
245 246 4.006989 ACAACCATAGTCGCAATTTGCTA 58.993 39.130 18.57 5.65 42.25 3.49
246 247 2.819608 ACAACCATAGTCGCAATTTGCT 59.180 40.909 18.57 3.52 42.25 3.91
247 248 3.216147 ACAACCATAGTCGCAATTTGC 57.784 42.857 11.42 11.42 40.69 3.68
248 249 4.142708 TGCTACAACCATAGTCGCAATTTG 60.143 41.667 0.00 0.00 35.17 2.32
249 250 4.006989 TGCTACAACCATAGTCGCAATTT 58.993 39.130 0.00 0.00 35.17 1.82
250 251 3.605634 TGCTACAACCATAGTCGCAATT 58.394 40.909 0.00 0.00 35.17 2.32
251 252 3.198068 CTGCTACAACCATAGTCGCAAT 58.802 45.455 0.00 0.00 37.26 3.56
252 253 2.028476 ACTGCTACAACCATAGTCGCAA 60.028 45.455 0.00 0.00 37.26 4.85
253 254 1.548719 ACTGCTACAACCATAGTCGCA 59.451 47.619 0.00 0.00 35.65 5.10
254 255 2.295253 ACTGCTACAACCATAGTCGC 57.705 50.000 0.00 0.00 0.00 5.19
255 256 4.242475 TGAAACTGCTACAACCATAGTCG 58.758 43.478 0.00 0.00 0.00 4.18
560 561 0.327000 CTCCACTCATCCCTTCCCCT 60.327 60.000 0.00 0.00 0.00 4.79
561 562 1.348775 CCTCCACTCATCCCTTCCCC 61.349 65.000 0.00 0.00 0.00 4.81
562 563 0.326618 TCCTCCACTCATCCCTTCCC 60.327 60.000 0.00 0.00 0.00 3.97
563 564 1.127343 CTCCTCCACTCATCCCTTCC 58.873 60.000 0.00 0.00 0.00 3.46
564 565 2.166907 TCTCCTCCACTCATCCCTTC 57.833 55.000 0.00 0.00 0.00 3.46
565 566 2.649742 TTCTCCTCCACTCATCCCTT 57.350 50.000 0.00 0.00 0.00 3.95
566 567 2.476199 CTTTCTCCTCCACTCATCCCT 58.524 52.381 0.00 0.00 0.00 4.20
567 568 1.134250 GCTTTCTCCTCCACTCATCCC 60.134 57.143 0.00 0.00 0.00 3.85
568 569 1.836802 AGCTTTCTCCTCCACTCATCC 59.163 52.381 0.00 0.00 0.00 3.51
569 570 3.449018 TGTAGCTTTCTCCTCCACTCATC 59.551 47.826 0.00 0.00 0.00 2.92
570 571 3.445008 TGTAGCTTTCTCCTCCACTCAT 58.555 45.455 0.00 0.00 0.00 2.90
571 572 2.828520 CTGTAGCTTTCTCCTCCACTCA 59.171 50.000 0.00 0.00 0.00 3.41
572 573 3.093057 TCTGTAGCTTTCTCCTCCACTC 58.907 50.000 0.00 0.00 0.00 3.51
573 574 3.096092 CTCTGTAGCTTTCTCCTCCACT 58.904 50.000 0.00 0.00 0.00 4.00
574 575 3.093057 TCTCTGTAGCTTTCTCCTCCAC 58.907 50.000 0.00 0.00 0.00 4.02
575 576 3.458044 TCTCTGTAGCTTTCTCCTCCA 57.542 47.619 0.00 0.00 0.00 3.86
576 577 4.810191 TTTCTCTGTAGCTTTCTCCTCC 57.190 45.455 0.00 0.00 0.00 4.30
577 578 6.031751 TCTTTTCTCTGTAGCTTTCTCCTC 57.968 41.667 0.00 0.00 0.00 3.71
578 579 6.619329 ATCTTTTCTCTGTAGCTTTCTCCT 57.381 37.500 0.00 0.00 0.00 3.69
579 580 8.254508 TCTTATCTTTTCTCTGTAGCTTTCTCC 58.745 37.037 0.00 0.00 0.00 3.71
580 581 9.301153 CTCTTATCTTTTCTCTGTAGCTTTCTC 57.699 37.037 0.00 0.00 0.00 2.87
581 582 9.030452 TCTCTTATCTTTTCTCTGTAGCTTTCT 57.970 33.333 0.00 0.00 0.00 2.52
582 583 9.646427 TTCTCTTATCTTTTCTCTGTAGCTTTC 57.354 33.333 0.00 0.00 0.00 2.62
583 584 9.651913 CTTCTCTTATCTTTTCTCTGTAGCTTT 57.348 33.333 0.00 0.00 0.00 3.51
584 585 8.811994 ACTTCTCTTATCTTTTCTCTGTAGCTT 58.188 33.333 0.00 0.00 0.00 3.74
585 586 8.361169 ACTTCTCTTATCTTTTCTCTGTAGCT 57.639 34.615 0.00 0.00 0.00 3.32
591 592 9.430623 GCACTTTACTTCTCTTATCTTTTCTCT 57.569 33.333 0.00 0.00 0.00 3.10
592 593 8.376942 CGCACTTTACTTCTCTTATCTTTTCTC 58.623 37.037 0.00 0.00 0.00 2.87
593 594 7.873505 ACGCACTTTACTTCTCTTATCTTTTCT 59.126 33.333 0.00 0.00 0.00 2.52
594 595 7.952637 CACGCACTTTACTTCTCTTATCTTTTC 59.047 37.037 0.00 0.00 0.00 2.29
595 596 7.095187 CCACGCACTTTACTTCTCTTATCTTTT 60.095 37.037 0.00 0.00 0.00 2.27
596 597 6.369065 CCACGCACTTTACTTCTCTTATCTTT 59.631 38.462 0.00 0.00 0.00 2.52
597 598 5.869888 CCACGCACTTTACTTCTCTTATCTT 59.130 40.000 0.00 0.00 0.00 2.40
598 599 5.411781 CCACGCACTTTACTTCTCTTATCT 58.588 41.667 0.00 0.00 0.00 1.98
599 600 4.567159 CCCACGCACTTTACTTCTCTTATC 59.433 45.833 0.00 0.00 0.00 1.75
600 601 4.504858 CCCACGCACTTTACTTCTCTTAT 58.495 43.478 0.00 0.00 0.00 1.73
601 602 3.863400 GCCCACGCACTTTACTTCTCTTA 60.863 47.826 0.00 0.00 34.03 2.10
602 603 2.767505 CCCACGCACTTTACTTCTCTT 58.232 47.619 0.00 0.00 0.00 2.85
603 604 1.608283 GCCCACGCACTTTACTTCTCT 60.608 52.381 0.00 0.00 34.03 3.10
604 605 0.796927 GCCCACGCACTTTACTTCTC 59.203 55.000 0.00 0.00 34.03 2.87
605 606 0.396811 AGCCCACGCACTTTACTTCT 59.603 50.000 0.00 0.00 37.52 2.85
606 607 2.000447 CTAGCCCACGCACTTTACTTC 59.000 52.381 0.00 0.00 37.52 3.01
607 608 1.621814 TCTAGCCCACGCACTTTACTT 59.378 47.619 0.00 0.00 37.52 2.24
608 609 1.263356 TCTAGCCCACGCACTTTACT 58.737 50.000 0.00 0.00 37.52 2.24
609 610 2.088950 TTCTAGCCCACGCACTTTAC 57.911 50.000 0.00 0.00 37.52 2.01
610 611 2.843401 TTTCTAGCCCACGCACTTTA 57.157 45.000 0.00 0.00 37.52 1.85
611 612 1.975660 TTTTCTAGCCCACGCACTTT 58.024 45.000 0.00 0.00 37.52 2.66
612 613 1.975660 TTTTTCTAGCCCACGCACTT 58.024 45.000 0.00 0.00 37.52 3.16
613 614 3.717842 TTTTTCTAGCCCACGCACT 57.282 47.368 0.00 0.00 37.52 4.40
628 629 3.403038 AGACAGCGCACTCATACTTTTT 58.597 40.909 11.47 0.00 0.00 1.94
629 630 2.996621 GAGACAGCGCACTCATACTTTT 59.003 45.455 11.47 0.00 33.86 2.27
630 631 2.611518 GAGACAGCGCACTCATACTTT 58.388 47.619 11.47 0.00 33.86 2.66
631 632 1.134965 GGAGACAGCGCACTCATACTT 60.135 52.381 23.07 0.00 35.17 2.24
632 633 0.457851 GGAGACAGCGCACTCATACT 59.542 55.000 23.07 8.65 35.17 2.12
633 634 0.457851 AGGAGACAGCGCACTCATAC 59.542 55.000 23.07 11.40 35.17 2.39
634 635 0.457443 CAGGAGACAGCGCACTCATA 59.543 55.000 23.07 0.00 35.17 2.15
635 636 1.217511 CAGGAGACAGCGCACTCAT 59.782 57.895 23.07 17.00 35.17 2.90
636 637 2.653115 CAGGAGACAGCGCACTCA 59.347 61.111 23.07 0.00 35.17 3.41
637 638 2.125753 CCAGGAGACAGCGCACTC 60.126 66.667 11.47 14.98 0.00 3.51
638 639 2.919856 ACCAGGAGACAGCGCACT 60.920 61.111 11.47 5.73 0.00 4.40
639 640 2.433318 GACCAGGAGACAGCGCAC 60.433 66.667 11.47 0.00 0.00 5.34
640 641 4.056125 CGACCAGGAGACAGCGCA 62.056 66.667 11.47 0.00 0.00 6.09
641 642 2.697761 TACGACCAGGAGACAGCGC 61.698 63.158 0.00 0.00 0.00 5.92
642 643 1.136984 GTACGACCAGGAGACAGCG 59.863 63.158 0.00 0.00 0.00 5.18
643 644 1.136984 CGTACGACCAGGAGACAGC 59.863 63.158 10.44 0.00 0.00 4.40
644 645 1.331138 GATCGTACGACCAGGAGACAG 59.669 57.143 22.14 0.00 0.00 3.51
645 646 1.376543 GATCGTACGACCAGGAGACA 58.623 55.000 22.14 0.00 0.00 3.41
646 647 0.662085 GGATCGTACGACCAGGAGAC 59.338 60.000 22.14 4.81 0.00 3.36
647 648 0.253894 TGGATCGTACGACCAGGAGA 59.746 55.000 25.68 10.80 0.00 3.71
648 649 0.663688 CTGGATCGTACGACCAGGAG 59.336 60.000 34.91 22.82 44.96 3.69
649 650 2.789842 CTGGATCGTACGACCAGGA 58.210 57.895 34.91 19.00 44.96 3.86
652 653 0.528924 CCAACTGGATCGTACGACCA 59.471 55.000 26.80 26.80 37.39 4.02
653 654 0.813184 TCCAACTGGATCGTACGACC 59.187 55.000 22.14 22.21 39.78 4.79
664 665 3.499737 GCCACGCGATCCAACTGG 61.500 66.667 15.93 9.56 0.00 4.00
665 666 3.499737 GGCCACGCGATCCAACTG 61.500 66.667 15.93 0.00 0.00 3.16
666 667 4.778143 GGGCCACGCGATCCAACT 62.778 66.667 15.93 0.00 0.00 3.16
690 691 4.072088 CGAACCGTTGCGCCAGAC 62.072 66.667 4.18 0.00 0.00 3.51
714 715 2.374877 GAATCGTTTCCATCCGGCGC 62.375 60.000 0.00 0.00 0.00 6.53
715 716 1.641677 GAATCGTTTCCATCCGGCG 59.358 57.895 0.00 0.00 0.00 6.46
724 725 8.405531 TGATGAATGAATAAAGGGAATCGTTTC 58.594 33.333 0.00 0.00 33.64 2.78
725 726 8.292444 TGATGAATGAATAAAGGGAATCGTTT 57.708 30.769 0.00 0.00 35.48 3.60
726 727 7.880160 TGATGAATGAATAAAGGGAATCGTT 57.120 32.000 0.00 0.00 0.00 3.85
727 728 7.880160 TTGATGAATGAATAAAGGGAATCGT 57.120 32.000 0.00 0.00 0.00 3.73
728 729 9.754382 ATTTTGATGAATGAATAAAGGGAATCG 57.246 29.630 0.00 0.00 0.00 3.34
741 742 7.155655 TCATTCGGTTCATTTTGATGAATGA 57.844 32.000 17.29 17.29 41.75 2.57
742 743 7.815398 TTCATTCGGTTCATTTTGATGAATG 57.185 32.000 14.79 14.79 41.88 2.67
743 744 9.439500 AAATTCATTCGGTTCATTTTGATGAAT 57.561 25.926 5.26 0.00 41.88 2.57
744 745 8.710551 CAAATTCATTCGGTTCATTTTGATGAA 58.289 29.630 0.00 0.00 38.14 2.57
745 746 7.331440 CCAAATTCATTCGGTTCATTTTGATGA 59.669 33.333 0.00 0.00 0.00 2.92
746 747 7.457868 CCAAATTCATTCGGTTCATTTTGATG 58.542 34.615 0.00 0.00 0.00 3.07
747 748 6.092533 GCCAAATTCATTCGGTTCATTTTGAT 59.907 34.615 0.00 0.00 0.00 2.57
748 749 5.407995 GCCAAATTCATTCGGTTCATTTTGA 59.592 36.000 0.00 0.00 0.00 2.69
749 750 5.620467 GCCAAATTCATTCGGTTCATTTTG 58.380 37.500 0.00 0.00 0.00 2.44
750 751 4.388469 CGCCAAATTCATTCGGTTCATTTT 59.612 37.500 0.00 0.00 0.00 1.82
751 752 3.925913 CGCCAAATTCATTCGGTTCATTT 59.074 39.130 0.00 0.00 0.00 2.32
752 753 3.510719 CGCCAAATTCATTCGGTTCATT 58.489 40.909 0.00 0.00 0.00 2.57
753 754 2.735126 GCGCCAAATTCATTCGGTTCAT 60.735 45.455 0.00 0.00 0.00 2.57
754 755 1.402194 GCGCCAAATTCATTCGGTTCA 60.402 47.619 0.00 0.00 0.00 3.18
755 756 1.268265 GCGCCAAATTCATTCGGTTC 58.732 50.000 0.00 0.00 0.00 3.62
756 757 0.108851 GGCGCCAAATTCATTCGGTT 60.109 50.000 24.80 0.00 0.00 4.44
757 758 1.510844 GGCGCCAAATTCATTCGGT 59.489 52.632 24.80 0.00 0.00 4.69
758 759 1.586042 CGGCGCCAAATTCATTCGG 60.586 57.895 28.98 0.37 0.00 4.30
759 760 1.586042 CCGGCGCCAAATTCATTCG 60.586 57.895 28.98 7.88 0.00 3.34
760 761 0.172352 TTCCGGCGCCAAATTCATTC 59.828 50.000 28.98 0.00 0.00 2.67
761 762 0.173255 CTTCCGGCGCCAAATTCATT 59.827 50.000 28.98 0.00 0.00 2.57
762 763 1.809207 CTTCCGGCGCCAAATTCAT 59.191 52.632 28.98 0.00 0.00 2.57
787 788 0.953471 TCAAATCGAGCCCAACGTGG 60.953 55.000 0.00 0.00 37.25 4.94
814 815 4.932799 CACCCCAACGTTTTCTTTTCTTTT 59.067 37.500 0.00 0.00 0.00 2.27
823 824 2.882137 TCTCAATCACCCCAACGTTTTC 59.118 45.455 0.00 0.00 0.00 2.29
824 825 2.938838 TCTCAATCACCCCAACGTTTT 58.061 42.857 0.00 0.00 0.00 2.43
825 826 2.649531 TCTCAATCACCCCAACGTTT 57.350 45.000 0.00 0.00 0.00 3.60
826 827 2.504367 CTTCTCAATCACCCCAACGTT 58.496 47.619 0.00 0.00 0.00 3.99
827 828 1.271379 CCTTCTCAATCACCCCAACGT 60.271 52.381 0.00 0.00 0.00 3.99
828 829 1.453155 CCTTCTCAATCACCCCAACG 58.547 55.000 0.00 0.00 0.00 4.10
830 831 0.039618 GGCCTTCTCAATCACCCCAA 59.960 55.000 0.00 0.00 0.00 4.12
831 832 1.691219 GGCCTTCTCAATCACCCCA 59.309 57.895 0.00 0.00 0.00 4.96
832 833 1.076705 GGGCCTTCTCAATCACCCC 60.077 63.158 0.84 0.00 0.00 4.95
833 834 0.259938 ATGGGCCTTCTCAATCACCC 59.740 55.000 4.53 0.00 37.88 4.61
834 835 2.149973 AATGGGCCTTCTCAATCACC 57.850 50.000 4.53 0.00 0.00 4.02
835 836 2.098117 CGAAATGGGCCTTCTCAATCAC 59.902 50.000 4.53 0.00 0.00 3.06
839 852 0.038166 AGCGAAATGGGCCTTCTCAA 59.962 50.000 4.53 0.00 0.00 3.02
843 856 0.383231 CATGAGCGAAATGGGCCTTC 59.617 55.000 4.53 0.00 0.00 3.46
897 910 2.158957 AGACTCGTGAAGGTGAAAGCAA 60.159 45.455 0.00 0.00 36.26 3.91
915 928 1.537638 TGAGACAACTGCGAGAGAGAC 59.462 52.381 0.00 0.00 0.00 3.36
916 929 1.897560 TGAGACAACTGCGAGAGAGA 58.102 50.000 0.00 0.00 0.00 3.10
917 930 2.713895 TTGAGACAACTGCGAGAGAG 57.286 50.000 0.00 0.00 0.00 3.20
918 931 3.452755 TTTTGAGACAACTGCGAGAGA 57.547 42.857 0.00 0.00 0.00 3.10
939 952 2.365617 TGGTGCGAGAGAGACTCTTTTT 59.634 45.455 6.40 0.00 41.35 1.94
940 953 1.964223 TGGTGCGAGAGAGACTCTTTT 59.036 47.619 6.40 0.00 41.35 2.27
941 954 1.621992 TGGTGCGAGAGAGACTCTTT 58.378 50.000 6.40 0.00 41.35 2.52
942 955 1.621992 TTGGTGCGAGAGAGACTCTT 58.378 50.000 6.40 0.00 41.35 2.85
943 956 1.748493 GATTGGTGCGAGAGAGACTCT 59.252 52.381 4.14 4.14 44.28 3.24
944 957 1.532921 CGATTGGTGCGAGAGAGACTC 60.533 57.143 0.00 0.00 41.79 3.36
945 958 0.453793 CGATTGGTGCGAGAGAGACT 59.546 55.000 0.00 0.00 0.00 3.24
946 959 0.526524 CCGATTGGTGCGAGAGAGAC 60.527 60.000 0.00 0.00 0.00 3.36
962 975 4.388499 GGGGAAACGAGCTGCCGA 62.388 66.667 15.53 0.00 0.00 5.54
967 980 3.647771 GGGGTGGGGAAACGAGCT 61.648 66.667 0.00 0.00 0.00 4.09
1317 1337 4.423209 GGGGCCAGGGTCCTCTCT 62.423 72.222 9.17 0.00 40.34 3.10
1734 1769 1.702401 TGGTCCACTTTGGCTGTGATA 59.298 47.619 7.26 0.00 37.47 2.15
1951 1986 9.431887 CTTAAGAAACTTTACAGCATAGTACCA 57.568 33.333 0.00 0.00 0.00 3.25
2180 2216 4.707105 TCTTGAATCTCACACAAAGAGCA 58.293 39.130 0.00 0.00 33.15 4.26
2181 2217 5.679734 TTCTTGAATCTCACACAAAGAGC 57.320 39.130 0.00 0.00 33.15 4.09
2228 2264 2.507058 ACAATCCAGCTTAGCTCATGGA 59.493 45.455 14.60 14.60 36.40 3.41
2233 2269 2.586258 TCGACAATCCAGCTTAGCTC 57.414 50.000 2.68 0.00 36.40 4.09
2300 2336 4.645535 TGCCTAGATCAATCAGCCATTAC 58.354 43.478 0.00 0.00 0.00 1.89
2307 2343 1.350351 CCCCCTGCCTAGATCAATCAG 59.650 57.143 0.00 0.00 0.00 2.90
2323 2359 1.227383 CACAGGAGCCATTACCCCC 59.773 63.158 0.00 0.00 0.00 5.40
2436 2473 6.515272 AAATTACTACATCAAGGCAAGGTG 57.485 37.500 0.00 0.00 0.00 4.00
2457 2494 8.275015 TGCAGGAAATCAAATATCTCGTAAAA 57.725 30.769 0.00 0.00 0.00 1.52
2475 2512 2.831685 ACGTGTCATACTTGCAGGAA 57.168 45.000 1.40 0.00 0.00 3.36
2629 2666 6.866010 TCCCTTCATTGATTAATCACGATG 57.134 37.500 17.76 18.07 36.36 3.84
2633 2670 7.830739 ACAACTTCCCTTCATTGATTAATCAC 58.169 34.615 17.76 0.00 36.36 3.06
2701 2738 3.766051 GAGATCCACTTGGCTGGAAAAAT 59.234 43.478 0.00 0.00 43.79 1.82
2757 2794 4.202357 TGGGATTGCCATCAGTGTAGTATC 60.202 45.833 0.00 0.00 35.15 2.24
2763 2800 1.567649 AGATGGGATTGCCATCAGTGT 59.432 47.619 31.32 13.79 44.43 3.55
2793 2830 6.769608 CAGTATGCATATTCGCTTAACAGA 57.230 37.500 10.16 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.