Multiple sequence alignment - TraesCS7B01G106300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G106300 chr7B 100.000 2629 0 0 1 2629 123304992 123302364 0.000000e+00 4855
1 TraesCS7B01G106300 chr7B 77.362 561 66 39 904 1431 123311894 123311362 2.580000e-70 276
2 TraesCS7B01G106300 chr7A 86.721 1717 137 37 979 2629 162509478 162507787 0.000000e+00 1823
3 TraesCS7B01G106300 chr7A 77.758 553 62 40 904 1431 162513663 162513147 1.540000e-72 283
4 TraesCS7B01G106300 chr7A 92.025 163 7 4 779 939 162509635 162509477 9.470000e-55 224
5 TraesCS7B01G106300 chr7D 87.558 1077 74 20 779 1829 161144505 161143463 0.000000e+00 1192
6 TraesCS7B01G106300 chr7D 92.683 287 20 1 1846 2132 161143478 161143193 1.880000e-111 412
7 TraesCS7B01G106300 chr7D 83.333 330 52 3 2162 2488 550981240 550980911 4.250000e-78 302
8 TraesCS7B01G106300 chr7D 77.091 550 67 33 907 1431 161187481 161186966 2.010000e-66 263
9 TraesCS7B01G106300 chr2B 97.586 290 3 1 477 762 666454329 666454040 6.540000e-136 494
10 TraesCS7B01G106300 chr2B 99.194 124 1 0 279 402 666455202 666455079 9.470000e-55 224
11 TraesCS7B01G106300 chr2B 98.507 67 0 1 412 477 666454431 666454365 1.650000e-22 117
12 TraesCS7B01G106300 chr5B 97.232 289 4 1 478 762 694315526 694315238 1.090000e-133 486
13 TraesCS7B01G106300 chr5B 85.223 291 37 3 477 762 707261109 707261398 7.120000e-76 294
14 TraesCS7B01G106300 chr5B 82.544 338 49 8 2132 2462 56952639 56952973 3.310000e-74 289
15 TraesCS7B01G106300 chr5B 81.899 337 53 6 2132 2462 56639938 56640272 7.170000e-71 278
16 TraesCS7B01G106300 chr5B 96.591 88 2 1 391 477 694315650 694315563 7.580000e-31 145
17 TraesCS7B01G106300 chr6D 87.889 289 31 3 477 761 423175177 423174889 1.170000e-88 337
18 TraesCS7B01G106300 chr6D 83.014 365 54 6 2135 2493 456332734 456332372 9.080000e-85 324
19 TraesCS7B01G106300 chr1D 86.942 291 32 3 477 762 415804001 415803712 3.260000e-84 322
20 TraesCS7B01G106300 chr6B 82.432 370 52 11 2132 2493 568261044 568261408 7.070000e-81 311
21 TraesCS7B01G106300 chr6A 81.934 393 48 13 2179 2550 446518404 446518794 7.070000e-81 311
22 TraesCS7B01G106300 chr4B 86.411 287 35 1 477 759 537397820 537397534 7.070000e-81 311
23 TraesCS7B01G106300 chr1B 82.016 367 58 6 2132 2493 343997479 343997116 3.290000e-79 305
24 TraesCS7B01G106300 chr1B 86.940 268 32 2 2179 2443 674066726 674066993 5.500000e-77 298
25 TraesCS7B01G106300 chr5D 83.333 312 46 6 2139 2445 54051245 54051555 1.540000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G106300 chr7B 123302364 123304992 2628 True 4855.000000 4855 100.000000 1 2629 1 chr7B.!!$R1 2628
1 TraesCS7B01G106300 chr7B 123311362 123311894 532 True 276.000000 276 77.362000 904 1431 1 chr7B.!!$R2 527
2 TraesCS7B01G106300 chr7A 162507787 162513663 5876 True 776.666667 1823 85.501333 779 2629 3 chr7A.!!$R1 1850
3 TraesCS7B01G106300 chr7D 161143193 161144505 1312 True 802.000000 1192 90.120500 779 2132 2 chr7D.!!$R3 1353
4 TraesCS7B01G106300 chr7D 161186966 161187481 515 True 263.000000 263 77.091000 907 1431 1 chr7D.!!$R1 524
5 TraesCS7B01G106300 chr2B 666454040 666455202 1162 True 278.333333 494 98.429000 279 762 3 chr2B.!!$R1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.173481 CGAGCACTGGAGATTCCGAA 59.827 55.0 0.0 0.0 40.17 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 5532 0.387929 TTCGATGGTCCTATGTCCGC 59.612 55.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.317857 GCTTGTTTTGGATAGAAGCTTACAG 58.682 40.000 0.00 0.00 36.83 2.74
25 26 6.149474 GCTTGTTTTGGATAGAAGCTTACAGA 59.851 38.462 0.00 0.00 36.83 3.41
26 27 7.148171 GCTTGTTTTGGATAGAAGCTTACAGAT 60.148 37.037 0.00 0.00 36.83 2.90
27 28 8.635765 TTGTTTTGGATAGAAGCTTACAGATT 57.364 30.769 0.00 0.00 0.00 2.40
28 29 8.268850 TGTTTTGGATAGAAGCTTACAGATTC 57.731 34.615 0.00 0.00 40.68 2.52
37 38 6.175712 GAAGCTTACAGATTCTTTGGAGTG 57.824 41.667 0.00 0.00 37.62 3.51
38 39 5.489792 AGCTTACAGATTCTTTGGAGTGA 57.510 39.130 0.00 0.00 0.00 3.41
40 41 6.299141 AGCTTACAGATTCTTTGGAGTGAAA 58.701 36.000 0.00 0.00 0.00 2.69
42 43 7.449704 AGCTTACAGATTCTTTGGAGTGAAATT 59.550 33.333 0.00 0.00 0.00 1.82
43 44 7.540055 GCTTACAGATTCTTTGGAGTGAAATTG 59.460 37.037 0.00 0.00 0.00 2.32
47 48 5.305128 AGATTCTTTGGAGTGAAATTGCCAA 59.695 36.000 0.00 0.00 38.54 4.52
49 50 4.214310 TCTTTGGAGTGAAATTGCCAAGA 58.786 39.130 0.00 0.00 41.05 3.02
52 53 2.886523 TGGAGTGAAATTGCCAAGACTG 59.113 45.455 0.00 0.00 0.00 3.51
53 54 3.149196 GGAGTGAAATTGCCAAGACTGA 58.851 45.455 0.00 0.00 0.00 3.41
54 55 3.569701 GGAGTGAAATTGCCAAGACTGAA 59.430 43.478 0.00 0.00 0.00 3.02
56 57 5.382618 AGTGAAATTGCCAAGACTGAATC 57.617 39.130 0.00 0.00 0.00 2.52
57 58 4.219288 AGTGAAATTGCCAAGACTGAATCC 59.781 41.667 0.00 0.00 0.00 3.01
58 59 4.022068 GTGAAATTGCCAAGACTGAATCCA 60.022 41.667 0.00 0.00 0.00 3.41
59 60 4.588106 TGAAATTGCCAAGACTGAATCCAA 59.412 37.500 0.00 0.00 0.00 3.53
60 61 5.246656 TGAAATTGCCAAGACTGAATCCAAT 59.753 36.000 0.00 0.00 0.00 3.16
61 62 6.436847 TGAAATTGCCAAGACTGAATCCAATA 59.563 34.615 0.00 0.00 0.00 1.90
63 64 5.643379 TTGCCAAGACTGAATCCAATAAC 57.357 39.130 0.00 0.00 0.00 1.89
64 65 4.661222 TGCCAAGACTGAATCCAATAACA 58.339 39.130 0.00 0.00 0.00 2.41
65 66 5.263599 TGCCAAGACTGAATCCAATAACAT 58.736 37.500 0.00 0.00 0.00 2.71
66 67 5.125900 TGCCAAGACTGAATCCAATAACATG 59.874 40.000 0.00 0.00 0.00 3.21
67 68 5.450965 GCCAAGACTGAATCCAATAACATGG 60.451 44.000 0.00 0.00 42.12 3.66
68 69 5.068198 CCAAGACTGAATCCAATAACATGGG 59.932 44.000 0.00 0.00 41.05 4.00
69 70 5.456921 AGACTGAATCCAATAACATGGGT 57.543 39.130 0.00 0.00 41.05 4.51
70 71 5.195940 AGACTGAATCCAATAACATGGGTG 58.804 41.667 0.00 0.00 41.05 4.61
71 72 5.044919 AGACTGAATCCAATAACATGGGTGA 60.045 40.000 0.00 0.00 41.05 4.02
72 73 5.579047 ACTGAATCCAATAACATGGGTGAA 58.421 37.500 0.00 0.00 41.05 3.18
73 74 5.653769 ACTGAATCCAATAACATGGGTGAAG 59.346 40.000 0.00 0.00 41.05 3.02
74 75 4.955450 TGAATCCAATAACATGGGTGAAGG 59.045 41.667 0.00 0.00 41.05 3.46
75 76 4.879295 ATCCAATAACATGGGTGAAGGA 57.121 40.909 0.00 0.00 41.05 3.36
76 77 4.879295 TCCAATAACATGGGTGAAGGAT 57.121 40.909 0.00 0.00 41.05 3.24
77 78 4.792068 TCCAATAACATGGGTGAAGGATC 58.208 43.478 0.00 0.00 41.05 3.36
78 79 4.478317 TCCAATAACATGGGTGAAGGATCT 59.522 41.667 0.00 0.00 41.05 2.75
81 82 8.339389 CCAATAACATGGGTGAAGGATCTCCT 62.339 46.154 0.00 0.00 41.75 3.69
96 97 5.096443 GATCTCCTTGATCCAGACTTTGT 57.904 43.478 0.00 0.00 44.34 2.83
97 98 6.227298 GATCTCCTTGATCCAGACTTTGTA 57.773 41.667 0.00 0.00 44.34 2.41
100 101 5.544176 TCTCCTTGATCCAGACTTTGTAAGT 59.456 40.000 0.00 0.00 46.38 2.24
101 102 6.724441 TCTCCTTGATCCAGACTTTGTAAGTA 59.276 38.462 0.00 0.00 43.03 2.24
102 103 7.234782 TCTCCTTGATCCAGACTTTGTAAGTAA 59.765 37.037 0.00 0.00 43.03 2.24
103 104 7.741785 TCCTTGATCCAGACTTTGTAAGTAAA 58.258 34.615 0.00 0.00 43.03 2.01
104 105 7.878127 TCCTTGATCCAGACTTTGTAAGTAAAG 59.122 37.037 0.00 0.00 43.03 1.85
105 106 7.878127 CCTTGATCCAGACTTTGTAAGTAAAGA 59.122 37.037 5.36 0.00 43.03 2.52
106 107 9.442047 CTTGATCCAGACTTTGTAAGTAAAGAT 57.558 33.333 5.36 0.00 43.03 2.40
107 108 8.777865 TGATCCAGACTTTGTAAGTAAAGATG 57.222 34.615 5.36 4.07 43.03 2.90
108 109 8.593679 TGATCCAGACTTTGTAAGTAAAGATGA 58.406 33.333 5.36 0.00 43.03 2.92
109 110 9.436957 GATCCAGACTTTGTAAGTAAAGATGAA 57.563 33.333 5.36 0.00 43.03 2.57
111 112 9.436957 TCCAGACTTTGTAAGTAAAGATGAATC 57.563 33.333 5.36 0.00 43.03 2.52
112 113 8.383619 CCAGACTTTGTAAGTAAAGATGAATCG 58.616 37.037 5.36 0.00 43.03 3.34
113 114 8.383619 CAGACTTTGTAAGTAAAGATGAATCGG 58.616 37.037 5.36 0.00 43.03 4.18
114 115 7.064728 AGACTTTGTAAGTAAAGATGAATCGGC 59.935 37.037 5.36 0.00 43.03 5.54
115 116 5.712217 TTGTAAGTAAAGATGAATCGGCG 57.288 39.130 0.00 0.00 0.00 6.46
116 117 4.116961 TGTAAGTAAAGATGAATCGGCGG 58.883 43.478 7.21 0.00 0.00 6.13
117 118 2.981859 AGTAAAGATGAATCGGCGGT 57.018 45.000 7.21 0.00 0.00 5.68
118 119 3.261981 AGTAAAGATGAATCGGCGGTT 57.738 42.857 4.42 4.42 0.00 4.44
120 121 4.957296 AGTAAAGATGAATCGGCGGTTAT 58.043 39.130 4.89 0.00 0.00 1.89
121 122 5.365619 AGTAAAGATGAATCGGCGGTTATT 58.634 37.500 4.89 0.00 0.00 1.40
122 123 6.518493 AGTAAAGATGAATCGGCGGTTATTA 58.482 36.000 4.89 0.00 0.00 0.98
123 124 7.159372 AGTAAAGATGAATCGGCGGTTATTAT 58.841 34.615 4.89 0.39 0.00 1.28
126 127 5.411781 AGATGAATCGGCGGTTATTATCTC 58.588 41.667 4.89 0.00 0.00 2.75
127 128 4.866508 TGAATCGGCGGTTATTATCTCT 57.133 40.909 4.89 0.00 0.00 3.10
128 129 4.556233 TGAATCGGCGGTTATTATCTCTG 58.444 43.478 4.89 0.00 0.00 3.35
129 130 4.038763 TGAATCGGCGGTTATTATCTCTGT 59.961 41.667 4.89 0.00 0.00 3.41
130 131 3.364889 TCGGCGGTTATTATCTCTGTG 57.635 47.619 7.21 0.00 0.00 3.66
131 132 2.035449 TCGGCGGTTATTATCTCTGTGG 59.965 50.000 7.21 0.00 0.00 4.17
133 134 3.131396 GGCGGTTATTATCTCTGTGGTG 58.869 50.000 0.00 0.00 0.00 4.17
134 135 3.431766 GGCGGTTATTATCTCTGTGGTGT 60.432 47.826 0.00 0.00 0.00 4.16
135 136 3.555956 GCGGTTATTATCTCTGTGGTGTG 59.444 47.826 0.00 0.00 0.00 3.82
136 137 4.119862 CGGTTATTATCTCTGTGGTGTGG 58.880 47.826 0.00 0.00 0.00 4.17
138 139 2.717639 ATTATCTCTGTGGTGTGGGC 57.282 50.000 0.00 0.00 0.00 5.36
141 142 1.130054 ATCTCTGTGGTGTGGGCAGT 61.130 55.000 0.00 0.00 0.00 4.40
142 143 1.149174 CTCTGTGGTGTGGGCAGTT 59.851 57.895 0.00 0.00 0.00 3.16
144 145 0.751277 TCTGTGGTGTGGGCAGTTTG 60.751 55.000 0.00 0.00 0.00 2.93
145 146 1.737355 CTGTGGTGTGGGCAGTTTGG 61.737 60.000 0.00 0.00 0.00 3.28
146 147 1.454847 GTGGTGTGGGCAGTTTGGA 60.455 57.895 0.00 0.00 0.00 3.53
147 148 1.152777 TGGTGTGGGCAGTTTGGAG 60.153 57.895 0.00 0.00 0.00 3.86
148 149 2.564721 GGTGTGGGCAGTTTGGAGC 61.565 63.158 0.00 0.00 0.00 4.70
149 150 1.827789 GTGTGGGCAGTTTGGAGCA 60.828 57.895 0.00 0.00 0.00 4.26
150 151 1.076412 TGTGGGCAGTTTGGAGCAA 60.076 52.632 0.00 0.00 0.00 3.91
152 153 1.076412 TGGGCAGTTTGGAGCAACA 60.076 52.632 0.00 0.00 0.00 3.33
153 154 1.108727 TGGGCAGTTTGGAGCAACAG 61.109 55.000 0.00 0.00 0.00 3.16
154 155 1.662044 GGCAGTTTGGAGCAACAGG 59.338 57.895 0.00 0.00 0.00 4.00
155 156 0.823356 GGCAGTTTGGAGCAACAGGA 60.823 55.000 0.00 0.00 0.00 3.86
159 160 2.426738 CAGTTTGGAGCAACAGGAACAA 59.573 45.455 0.00 0.00 0.00 2.83
160 161 2.689983 AGTTTGGAGCAACAGGAACAAG 59.310 45.455 0.00 0.00 0.00 3.16
161 162 2.427095 GTTTGGAGCAACAGGAACAAGT 59.573 45.455 0.00 0.00 0.00 3.16
162 163 3.569194 TTGGAGCAACAGGAACAAGTA 57.431 42.857 0.00 0.00 0.00 2.24
163 164 3.788227 TGGAGCAACAGGAACAAGTAT 57.212 42.857 0.00 0.00 0.00 2.12
165 166 5.435686 TGGAGCAACAGGAACAAGTATAT 57.564 39.130 0.00 0.00 0.00 0.86
166 167 5.185454 TGGAGCAACAGGAACAAGTATATG 58.815 41.667 0.00 0.00 0.00 1.78
167 168 4.035675 GGAGCAACAGGAACAAGTATATGC 59.964 45.833 0.00 0.00 0.00 3.14
168 169 4.588899 AGCAACAGGAACAAGTATATGCA 58.411 39.130 0.00 0.00 33.89 3.96
169 170 5.195940 AGCAACAGGAACAAGTATATGCAT 58.804 37.500 3.79 3.79 33.89 3.96
170 171 5.066893 AGCAACAGGAACAAGTATATGCATG 59.933 40.000 10.16 0.00 33.89 4.06
171 172 5.276270 CAACAGGAACAAGTATATGCATGC 58.724 41.667 11.82 11.82 0.00 4.06
172 173 4.525996 ACAGGAACAAGTATATGCATGCA 58.474 39.130 25.04 25.04 0.00 3.96
173 174 4.577693 ACAGGAACAAGTATATGCATGCAG 59.422 41.667 26.69 12.73 0.00 4.41
174 175 4.818005 CAGGAACAAGTATATGCATGCAGA 59.182 41.667 26.69 22.88 0.00 4.26
175 176 5.049612 CAGGAACAAGTATATGCATGCAGAG 60.050 44.000 26.69 11.58 0.00 3.35
176 177 5.059161 GGAACAAGTATATGCATGCAGAGA 58.941 41.667 26.69 16.82 0.00 3.10
177 178 5.704515 GGAACAAGTATATGCATGCAGAGAT 59.295 40.000 26.69 19.74 0.00 2.75
179 180 6.798315 ACAAGTATATGCATGCAGAGATTC 57.202 37.500 26.69 15.60 0.00 2.52
180 181 6.293698 ACAAGTATATGCATGCAGAGATTCA 58.706 36.000 26.69 0.00 0.00 2.57
182 183 7.447545 ACAAGTATATGCATGCAGAGATTCAAT 59.552 33.333 26.69 8.22 0.00 2.57
183 184 8.943002 CAAGTATATGCATGCAGAGATTCAATA 58.057 33.333 26.69 10.32 0.00 1.90
184 185 9.682465 AAGTATATGCATGCAGAGATTCAATAT 57.318 29.630 26.69 16.51 0.00 1.28
186 187 9.106070 GTATATGCATGCAGAGATTCAATATCA 57.894 33.333 26.69 0.00 0.00 2.15
187 188 6.894339 ATGCATGCAGAGATTCAATATCAA 57.106 33.333 26.69 0.00 0.00 2.57
188 189 6.068473 TGCATGCAGAGATTCAATATCAAC 57.932 37.500 18.46 0.00 0.00 3.18
189 190 5.009310 TGCATGCAGAGATTCAATATCAACC 59.991 40.000 18.46 0.00 0.00 3.77
190 191 5.009310 GCATGCAGAGATTCAATATCAACCA 59.991 40.000 14.21 0.00 0.00 3.67
192 193 7.658261 CATGCAGAGATTCAATATCAACCAAT 58.342 34.615 0.00 0.00 0.00 3.16
193 194 7.649533 TGCAGAGATTCAATATCAACCAATT 57.350 32.000 0.00 0.00 0.00 2.32
195 196 6.854892 GCAGAGATTCAATATCAACCAATTCG 59.145 38.462 0.00 0.00 0.00 3.34
197 198 8.400947 CAGAGATTCAATATCAACCAATTCGTT 58.599 33.333 0.00 0.00 0.00 3.85
198 199 8.616076 AGAGATTCAATATCAACCAATTCGTTC 58.384 33.333 0.00 0.00 0.00 3.95
199 200 7.409697 AGATTCAATATCAACCAATTCGTTCG 58.590 34.615 0.00 0.00 0.00 3.95
200 201 6.729391 TTCAATATCAACCAATTCGTTCGA 57.271 33.333 0.00 0.00 0.00 3.71
202 203 6.714492 TCAATATCAACCAATTCGTTCGATG 58.286 36.000 9.44 0.00 0.00 3.84
203 204 5.673337 ATATCAACCAATTCGTTCGATGG 57.327 39.130 11.66 11.66 38.91 3.51
205 206 3.403968 TCAACCAATTCGTTCGATGGAA 58.596 40.909 17.84 4.46 36.75 3.53
206 207 3.815962 TCAACCAATTCGTTCGATGGAAA 59.184 39.130 17.84 4.19 36.75 3.13
207 208 4.457603 TCAACCAATTCGTTCGATGGAAAT 59.542 37.500 17.84 0.00 36.75 2.17
208 209 4.616181 ACCAATTCGTTCGATGGAAATC 57.384 40.909 17.84 0.00 36.75 2.17
209 210 4.006989 ACCAATTCGTTCGATGGAAATCA 58.993 39.130 17.84 0.00 36.75 2.57
210 211 4.640201 ACCAATTCGTTCGATGGAAATCAT 59.360 37.500 17.84 0.00 39.13 2.45
211 212 5.207768 CCAATTCGTTCGATGGAAATCATC 58.792 41.667 8.59 0.00 46.63 2.92
226 227 3.912496 ATCATCCAGGAACACATTCGA 57.088 42.857 0.00 0.00 35.48 3.71
227 228 3.251479 TCATCCAGGAACACATTCGAG 57.749 47.619 0.00 0.00 35.48 4.04
228 229 1.667724 CATCCAGGAACACATTCGAGC 59.332 52.381 0.00 0.00 35.48 5.03
231 232 1.609061 CCAGGAACACATTCGAGCACT 60.609 52.381 0.00 0.00 35.48 4.40
235 236 1.728971 GAACACATTCGAGCACTGGAG 59.271 52.381 0.00 0.00 0.00 3.86
236 237 0.969149 ACACATTCGAGCACTGGAGA 59.031 50.000 0.00 0.00 0.00 3.71
237 238 1.552337 ACACATTCGAGCACTGGAGAT 59.448 47.619 0.00 0.00 0.00 2.75
238 239 2.027745 ACACATTCGAGCACTGGAGATT 60.028 45.455 0.00 0.00 0.00 2.40
239 240 2.606725 CACATTCGAGCACTGGAGATTC 59.393 50.000 0.00 0.00 0.00 2.52
240 241 2.208431 CATTCGAGCACTGGAGATTCC 58.792 52.381 0.00 0.00 36.96 3.01
242 243 0.679960 TCGAGCACTGGAGATTCCGA 60.680 55.000 0.00 0.00 40.17 4.55
243 244 0.173481 CGAGCACTGGAGATTCCGAA 59.827 55.000 0.00 0.00 40.17 4.30
244 245 1.202463 CGAGCACTGGAGATTCCGAAT 60.202 52.381 0.00 0.00 40.17 3.34
245 246 2.208431 GAGCACTGGAGATTCCGAATG 58.792 52.381 0.00 0.00 40.17 2.67
246 247 1.833630 AGCACTGGAGATTCCGAATGA 59.166 47.619 0.00 0.00 40.17 2.57
248 249 2.159043 GCACTGGAGATTCCGAATGAGA 60.159 50.000 0.00 0.00 40.17 3.27
249 250 3.679917 GCACTGGAGATTCCGAATGAGAA 60.680 47.826 0.00 0.00 40.17 2.87
250 251 4.118410 CACTGGAGATTCCGAATGAGAAG 58.882 47.826 0.00 0.00 40.17 2.85
251 252 4.026744 ACTGGAGATTCCGAATGAGAAGA 58.973 43.478 0.00 0.00 40.17 2.87
252 253 4.467795 ACTGGAGATTCCGAATGAGAAGAA 59.532 41.667 0.00 0.00 40.17 2.52
253 254 5.016051 TGGAGATTCCGAATGAGAAGAAG 57.984 43.478 0.00 0.00 40.17 2.85
254 255 3.807071 GGAGATTCCGAATGAGAAGAAGC 59.193 47.826 0.00 0.00 0.00 3.86
255 256 4.437239 GAGATTCCGAATGAGAAGAAGCA 58.563 43.478 0.00 0.00 0.00 3.91
256 257 4.440880 AGATTCCGAATGAGAAGAAGCAG 58.559 43.478 0.00 0.00 0.00 4.24
258 259 1.276138 TCCGAATGAGAAGAAGCAGCA 59.724 47.619 0.00 0.00 0.00 4.41
259 260 1.664659 CCGAATGAGAAGAAGCAGCAG 59.335 52.381 0.00 0.00 0.00 4.24
261 262 2.348059 CGAATGAGAAGAAGCAGCAGTC 59.652 50.000 0.00 0.00 0.00 3.51
262 263 3.598299 GAATGAGAAGAAGCAGCAGTCT 58.402 45.455 0.00 0.00 0.00 3.24
263 264 2.739885 TGAGAAGAAGCAGCAGTCTC 57.260 50.000 0.00 1.54 36.17 3.36
264 265 1.966354 TGAGAAGAAGCAGCAGTCTCA 59.034 47.619 11.32 11.32 41.76 3.27
265 266 2.366590 TGAGAAGAAGCAGCAGTCTCAA 59.633 45.455 12.44 1.28 41.22 3.02
266 267 2.995258 GAGAAGAAGCAGCAGTCTCAAG 59.005 50.000 0.00 0.00 35.77 3.02
267 268 2.368221 AGAAGAAGCAGCAGTCTCAAGT 59.632 45.455 0.00 0.00 0.00 3.16
268 269 3.576118 AGAAGAAGCAGCAGTCTCAAGTA 59.424 43.478 0.00 0.00 0.00 2.24
269 270 4.222588 AGAAGAAGCAGCAGTCTCAAGTAT 59.777 41.667 0.00 0.00 0.00 2.12
270 271 4.550076 AGAAGCAGCAGTCTCAAGTATT 57.450 40.909 0.00 0.00 0.00 1.89
403 404 1.080434 GAACTTCCTCTCAGCGCGT 60.080 57.895 8.43 0.00 0.00 6.01
405 406 0.601558 AACTTCCTCTCAGCGCGTTA 59.398 50.000 8.43 0.00 0.00 3.18
409 410 1.080772 CCTCTCAGCGCGTTACACA 60.081 57.895 8.43 0.00 0.00 3.72
410 411 0.666274 CCTCTCAGCGCGTTACACAA 60.666 55.000 8.43 0.00 0.00 3.33
411 412 0.435008 CTCTCAGCGCGTTACACAAC 59.565 55.000 8.43 0.00 0.00 3.32
412 413 0.249114 TCTCAGCGCGTTACACAACA 60.249 50.000 8.43 0.00 34.05 3.33
414 415 1.989864 CTCAGCGCGTTACACAACATA 59.010 47.619 8.43 0.00 34.05 2.29
415 416 1.722464 TCAGCGCGTTACACAACATAC 59.278 47.619 8.43 0.00 34.05 2.39
650 1330 5.607119 TTAGCTAAGCACTGTTTACAAGC 57.393 39.130 0.86 0.00 0.00 4.01
683 1363 7.684317 TGTAACCTATGATGTAATCCCTGAA 57.316 36.000 0.00 0.00 44.73 3.02
775 1455 1.301637 AAAAACATTGCCAGGCCGC 60.302 52.632 9.64 0.00 0.00 6.53
776 1456 1.757423 AAAAACATTGCCAGGCCGCT 61.757 50.000 9.64 0.00 0.00 5.52
777 1457 0.897863 AAAACATTGCCAGGCCGCTA 60.898 50.000 9.64 0.00 0.00 4.26
794 4045 4.676018 GCCGCTAAAGAAGAAGAGTATACG 59.324 45.833 0.00 0.00 0.00 3.06
796 4047 6.493116 CCGCTAAAGAAGAAGAGTATACGAA 58.507 40.000 0.00 0.00 0.00 3.85
803 4056 7.383102 AGAAGAAGAGTATACGAACCGTTTA 57.617 36.000 0.00 0.00 41.54 2.01
804 4057 7.994194 AGAAGAAGAGTATACGAACCGTTTAT 58.006 34.615 0.00 0.00 41.54 1.40
896 4150 3.932313 AAACTTGCGCGCGAACGT 61.932 55.556 37.18 26.16 42.83 3.99
938 4192 2.351157 GCAACTGTCATGCAACTTCCTC 60.351 50.000 0.00 0.00 43.29 3.71
939 4193 2.191128 ACTGTCATGCAACTTCCTCC 57.809 50.000 0.00 0.00 0.00 4.30
940 4194 1.271597 ACTGTCATGCAACTTCCTCCC 60.272 52.381 0.00 0.00 0.00 4.30
941 4195 1.004044 CTGTCATGCAACTTCCTCCCT 59.996 52.381 0.00 0.00 0.00 4.20
942 4196 1.425066 TGTCATGCAACTTCCTCCCTT 59.575 47.619 0.00 0.00 0.00 3.95
947 4201 2.344592 TGCAACTTCCTCCCTTCCTAA 58.655 47.619 0.00 0.00 0.00 2.69
959 4213 1.486726 CCTTCCTAATCTCCACGCCTT 59.513 52.381 0.00 0.00 0.00 4.35
960 4214 2.483889 CCTTCCTAATCTCCACGCCTTC 60.484 54.545 0.00 0.00 0.00 3.46
962 4216 1.123928 CCTAATCTCCACGCCTTCCT 58.876 55.000 0.00 0.00 0.00 3.36
963 4217 1.069358 CCTAATCTCCACGCCTTCCTC 59.931 57.143 0.00 0.00 0.00 3.71
964 4218 1.069358 CTAATCTCCACGCCTTCCTCC 59.931 57.143 0.00 0.00 0.00 4.30
965 4219 1.961180 AATCTCCACGCCTTCCTCCG 61.961 60.000 0.00 0.00 0.00 4.63
966 4220 3.382832 CTCCACGCCTTCCTCCGT 61.383 66.667 0.00 0.00 38.35 4.69
967 4221 2.920912 TCCACGCCTTCCTCCGTT 60.921 61.111 0.00 0.00 35.17 4.44
968 4222 2.742372 CCACGCCTTCCTCCGTTG 60.742 66.667 0.00 0.00 35.17 4.10
969 4223 2.342279 CACGCCTTCCTCCGTTGA 59.658 61.111 0.00 0.00 35.17 3.18
973 4227 1.602237 GCCTTCCTCCGTTGATCCA 59.398 57.895 0.00 0.00 0.00 3.41
986 4240 1.115326 TGATCCATCCATCGACCGCT 61.115 55.000 0.00 0.00 0.00 5.52
993 4252 2.427245 CCATCGACCGCTTCTCCCT 61.427 63.158 0.00 0.00 0.00 4.20
1051 4312 4.252570 AGGCCATATAGCTACCTCGTAT 57.747 45.455 5.01 0.00 0.00 3.06
1069 4330 4.096231 TCGTATAGCGTACAAAGTTGCCTA 59.904 41.667 0.00 0.00 42.13 3.93
1123 4409 3.088532 ACACACTTGTTGCAAAGAGGAA 58.911 40.909 0.00 0.00 28.43 3.36
1182 4475 2.123251 GGGGAGGATGAGGCTCGA 60.123 66.667 10.42 0.00 0.00 4.04
1187 4480 1.614996 GAGGATGAGGCTCGATCTGA 58.385 55.000 19.37 0.65 0.00 3.27
1448 4761 2.576317 GCGTACGTCCTCTCGTGC 60.576 66.667 17.90 0.00 43.93 5.34
1451 4764 0.520827 CGTACGTCCTCTCGTGCTTC 60.521 60.000 7.22 0.00 43.93 3.86
1474 4790 0.179134 TTCCAACGTGTTTTTGGCGG 60.179 50.000 0.00 0.00 42.96 6.13
1498 4814 0.616111 AGGTGGTAGGCTCTGGTGAG 60.616 60.000 0.00 0.00 42.96 3.51
1590 4909 5.182487 TGGCACTTTGTACATACATACAGG 58.818 41.667 0.00 0.00 36.45 4.00
1591 4910 4.574828 GGCACTTTGTACATACATACAGGG 59.425 45.833 0.00 0.00 36.45 4.45
1596 4915 7.065803 CACTTTGTACATACATACAGGGGAAAG 59.934 40.741 0.00 0.00 36.45 2.62
1677 5029 9.734620 GAGCATCAGCAATACATTTGTATTTAA 57.265 29.630 12.17 1.42 41.99 1.52
1777 5134 8.308207 AGTCTACTTCCTCATAAGTTCTCAAAC 58.692 37.037 0.00 0.00 40.20 2.93
1799 5156 5.751586 ACCTTGACCAAGAAAAGTTCTGTA 58.248 37.500 11.06 0.00 40.59 2.74
1832 5190 2.352503 ATGCATGCGTGGAAGTTTTC 57.647 45.000 12.68 0.00 0.00 2.29
1848 5206 7.064490 TGGAAGTTTTCTTTTTGAGACAAATGC 59.936 33.333 0.00 0.00 40.61 3.56
1855 5213 5.243507 TCTTTTTGAGACAAATGCATGCCTA 59.756 36.000 16.68 0.00 0.00 3.93
1920 5278 3.006672 CCAAGAGGCAGAACGTGTT 57.993 52.632 0.00 0.00 0.00 3.32
2152 5532 3.002348 GCGGACTTCTCAAATTAATCGGG 59.998 47.826 0.00 0.00 0.00 5.14
2164 5544 0.963962 TAATCGGGCGGACATAGGAC 59.036 55.000 0.00 0.00 0.00 3.85
2165 5545 1.755393 AATCGGGCGGACATAGGACC 61.755 60.000 0.00 0.00 0.00 4.46
2166 5546 2.939760 ATCGGGCGGACATAGGACCA 62.940 60.000 0.00 0.00 0.00 4.02
2167 5547 2.507854 CGGGCGGACATAGGACCAT 61.508 63.158 0.00 0.00 0.00 3.55
2169 5549 1.006102 GGCGGACATAGGACCATCG 60.006 63.158 0.00 0.00 0.00 3.84
2170 5550 1.461091 GGCGGACATAGGACCATCGA 61.461 60.000 0.00 0.00 0.00 3.59
2173 5553 1.599667 CGGACATAGGACCATCGAACG 60.600 57.143 0.00 0.00 0.00 3.95
2176 5556 1.407979 ACATAGGACCATCGAACGGAC 59.592 52.381 10.99 4.88 0.00 4.79
2177 5557 1.681793 CATAGGACCATCGAACGGACT 59.318 52.381 10.99 10.22 0.00 3.85
2179 5559 1.390565 AGGACCATCGAACGGACTAG 58.609 55.000 10.99 0.00 0.00 2.57
2183 5566 2.288458 GACCATCGAACGGACTAGAGAG 59.712 54.545 10.99 0.00 0.00 3.20
2196 5579 8.401490 ACGGACTAGAGAGAAGTAAAAAGTAA 57.599 34.615 0.00 0.00 0.00 2.24
2197 5580 8.296000 ACGGACTAGAGAGAAGTAAAAAGTAAC 58.704 37.037 0.00 0.00 0.00 2.50
2229 5612 1.768870 CCAACCGAACCCCTCATATCT 59.231 52.381 0.00 0.00 0.00 1.98
2231 5614 3.371595 CCAACCGAACCCCTCATATCTTT 60.372 47.826 0.00 0.00 0.00 2.52
2246 5629 5.413833 TCATATCTTTCCTATACGTCCGGAC 59.586 44.000 25.28 25.28 0.00 4.79
2251 5634 0.950116 CCTATACGTCCGGACTGTCC 59.050 60.000 30.92 16.99 0.00 4.02
2266 5649 0.387929 TGTCCGCGAACCCTCATATC 59.612 55.000 8.23 0.00 0.00 1.63
2279 5662 7.279536 CGAACCCTCATATCCATCTCAAATATG 59.720 40.741 0.00 0.00 35.58 1.78
2290 5673 6.159222 TCCATCTCAAATATGGGGAGGATATG 59.841 42.308 2.45 0.00 43.52 1.78
2297 5680 0.178891 TGGGGAGGATATGAGGGCTC 60.179 60.000 0.00 0.00 0.00 4.70
2298 5681 0.178891 GGGGAGGATATGAGGGCTCA 60.179 60.000 0.00 0.00 44.59 4.26
2300 5683 1.722034 GGAGGATATGAGGGCTCACA 58.278 55.000 0.00 0.00 43.11 3.58
2304 5687 1.000283 GGATATGAGGGCTCACAGACG 60.000 57.143 0.00 0.00 43.11 4.18
2306 5689 2.004808 TATGAGGGCTCACAGACGCG 62.005 60.000 3.53 3.53 43.11 6.01
2342 5725 2.890371 GTCCGCCACATAGGACGT 59.110 61.111 0.00 0.00 46.08 4.34
2354 5737 3.006728 GGACGTGTCCCCATCCCA 61.007 66.667 7.86 0.00 43.94 4.37
2355 5738 2.375345 GGACGTGTCCCCATCCCAT 61.375 63.158 7.86 0.00 43.94 4.00
2360 5743 0.182775 GTGTCCCCATCCCATACCAC 59.817 60.000 0.00 0.00 0.00 4.16
2361 5744 0.253394 TGTCCCCATCCCATACCACA 60.253 55.000 0.00 0.00 0.00 4.17
2366 5749 2.965147 CCCCATCCCATACCACATTTTC 59.035 50.000 0.00 0.00 0.00 2.29
2367 5750 3.374098 CCCCATCCCATACCACATTTTCT 60.374 47.826 0.00 0.00 0.00 2.52
2368 5751 3.891366 CCCATCCCATACCACATTTTCTC 59.109 47.826 0.00 0.00 0.00 2.87
2369 5752 4.386761 CCCATCCCATACCACATTTTCTCT 60.387 45.833 0.00 0.00 0.00 3.10
2402 5787 9.790344 TTCATTCTTTTCTTTCTCTCTTCATCT 57.210 29.630 0.00 0.00 0.00 2.90
2403 5788 9.434420 TCATTCTTTTCTTTCTCTCTTCATCTC 57.566 33.333 0.00 0.00 0.00 2.75
2404 5789 8.667463 CATTCTTTTCTTTCTCTCTTCATCTCC 58.333 37.037 0.00 0.00 0.00 3.71
2405 5790 7.308450 TCTTTTCTTTCTCTCTTCATCTCCA 57.692 36.000 0.00 0.00 0.00 3.86
2409 5798 7.434927 TTCTTTCTCTCTTCATCTCCATCAT 57.565 36.000 0.00 0.00 0.00 2.45
2426 5815 0.168788 CATTCACATGCACGTGACCC 59.831 55.000 22.23 1.56 45.36 4.46
2429 5818 1.741401 CACATGCACGTGACCCGAT 60.741 57.895 22.23 0.00 39.34 4.18
2434 5823 2.432206 TGCACGTGACCCGATATATG 57.568 50.000 22.23 0.00 40.70 1.78
2445 5834 7.096023 CGTGACCCGATATATGAGAAAGAAAAG 60.096 40.741 0.00 0.00 39.56 2.27
2446 5835 7.926555 GTGACCCGATATATGAGAAAGAAAAGA 59.073 37.037 0.00 0.00 0.00 2.52
2447 5836 8.482943 TGACCCGATATATGAGAAAGAAAAGAA 58.517 33.333 0.00 0.00 0.00 2.52
2448 5837 9.326413 GACCCGATATATGAGAAAGAAAAGAAA 57.674 33.333 0.00 0.00 0.00 2.52
2449 5838 9.331282 ACCCGATATATGAGAAAGAAAAGAAAG 57.669 33.333 0.00 0.00 0.00 2.62
2450 5839 9.547753 CCCGATATATGAGAAAGAAAAGAAAGA 57.452 33.333 0.00 0.00 0.00 2.52
2457 5846 6.180472 TGAGAAAGAAAAGAAAGAGTGTGGT 58.820 36.000 0.00 0.00 0.00 4.16
2461 5850 5.567138 AGAAAAGAAAGAGTGTGGTTGTG 57.433 39.130 0.00 0.00 0.00 3.33
2463 5852 2.418368 AGAAAGAGTGTGGTTGTGCA 57.582 45.000 0.00 0.00 0.00 4.57
2464 5853 2.292267 AGAAAGAGTGTGGTTGTGCAG 58.708 47.619 0.00 0.00 0.00 4.41
2466 5855 1.668419 AAGAGTGTGGTTGTGCAGAC 58.332 50.000 0.00 0.00 0.00 3.51
2467 5856 0.541392 AGAGTGTGGTTGTGCAGACA 59.459 50.000 0.00 0.00 0.00 3.41
2468 5857 0.940126 GAGTGTGGTTGTGCAGACAG 59.060 55.000 0.00 0.00 32.26 3.51
2476 5865 6.094048 GTGTGGTTGTGCAGACAGATAAATAT 59.906 38.462 0.00 0.00 32.26 1.28
2477 5866 6.093909 TGTGGTTGTGCAGACAGATAAATATG 59.906 38.462 0.00 0.00 32.26 1.78
2480 5869 5.372343 TGTGCAGACAGATAAATATGGGT 57.628 39.130 0.00 0.00 0.00 4.51
2482 5871 5.822519 TGTGCAGACAGATAAATATGGGTTC 59.177 40.000 0.00 0.00 0.00 3.62
2499 5903 0.806884 TTCAAAACGTGACCGAGCGT 60.807 50.000 0.00 0.00 43.64 5.07
2504 5908 4.337060 CGTGACCGAGCGTGTCCA 62.337 66.667 8.33 0.00 35.63 4.02
2506 5910 3.220658 TGACCGAGCGTGTCCACA 61.221 61.111 0.00 0.00 31.60 4.17
2507 5911 2.430921 GACCGAGCGTGTCCACAG 60.431 66.667 0.00 0.00 0.00 3.66
2520 5924 3.685139 GTCCACAGACATTTGAGGAGA 57.315 47.619 0.00 0.00 42.99 3.71
2521 5925 3.330267 GTCCACAGACATTTGAGGAGAC 58.670 50.000 0.00 0.00 42.99 3.36
2522 5926 2.029020 TCCACAGACATTTGAGGAGACG 60.029 50.000 0.00 0.00 33.65 4.18
2531 5935 6.595716 AGACATTTGAGGAGACGAATTAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
2532 5936 6.238648 ACATTTGAGGAGACGAATTAAAGGT 58.761 36.000 0.00 0.00 0.00 3.50
2537 5941 5.647658 TGAGGAGACGAATTAAAGGTACGTA 59.352 40.000 0.00 0.00 37.32 3.57
2539 5943 4.737279 GGAGACGAATTAAAGGTACGTAGC 59.263 45.833 16.85 16.85 37.32 3.58
2550 5954 2.761208 AGGTACGTAGCTGAAGATGCTT 59.239 45.455 25.50 0.00 41.46 3.91
2552 5956 3.933332 GGTACGTAGCTGAAGATGCTTTT 59.067 43.478 17.27 0.00 41.46 2.27
2556 5960 5.238583 ACGTAGCTGAAGATGCTTTTACTT 58.761 37.500 0.00 0.00 41.46 2.24
2572 5976 6.366332 GCTTTTACTTCTCATCTTTCTCGTCA 59.634 38.462 0.00 0.00 0.00 4.35
2604 6008 1.282157 CACCCCTGGTCTTCCTTTAGG 59.718 57.143 0.00 0.00 31.02 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.149474 TCTGTAAGCTTCTATCCAAAACAAGC 59.851 38.462 0.00 0.00 39.87 4.01
2 3 8.635765 AATCTGTAAGCTTCTATCCAAAACAA 57.364 30.769 0.00 0.00 0.00 2.83
3 4 8.103305 AGAATCTGTAAGCTTCTATCCAAAACA 58.897 33.333 0.00 0.00 46.64 2.83
15 16 5.869579 TCACTCCAAAGAATCTGTAAGCTT 58.130 37.500 3.48 3.48 0.00 3.74
17 18 6.560253 TTTCACTCCAAAGAATCTGTAAGC 57.440 37.500 0.00 0.00 0.00 3.09
19 20 7.370383 GCAATTTCACTCCAAAGAATCTGTAA 58.630 34.615 0.00 0.00 0.00 2.41
20 21 6.071952 GGCAATTTCACTCCAAAGAATCTGTA 60.072 38.462 0.00 0.00 0.00 2.74
21 22 5.279156 GGCAATTTCACTCCAAAGAATCTGT 60.279 40.000 0.00 0.00 0.00 3.41
24 25 5.138125 TGGCAATTTCACTCCAAAGAATC 57.862 39.130 0.00 0.00 0.00 2.52
25 26 5.305128 TCTTGGCAATTTCACTCCAAAGAAT 59.695 36.000 0.00 0.00 38.04 2.40
26 27 4.648762 TCTTGGCAATTTCACTCCAAAGAA 59.351 37.500 0.00 0.00 38.04 2.52
27 28 4.037923 GTCTTGGCAATTTCACTCCAAAGA 59.962 41.667 0.00 0.00 38.04 2.52
28 29 4.038402 AGTCTTGGCAATTTCACTCCAAAG 59.962 41.667 0.00 0.00 38.04 2.77
29 30 3.960102 AGTCTTGGCAATTTCACTCCAAA 59.040 39.130 0.00 0.00 38.04 3.28
32 33 3.149196 TCAGTCTTGGCAATTTCACTCC 58.851 45.455 0.00 0.00 0.00 3.85
33 34 4.836125 TTCAGTCTTGGCAATTTCACTC 57.164 40.909 0.00 0.00 0.00 3.51
34 35 4.219288 GGATTCAGTCTTGGCAATTTCACT 59.781 41.667 0.00 0.00 0.00 3.41
36 37 4.151121 TGGATTCAGTCTTGGCAATTTCA 58.849 39.130 0.00 0.00 0.00 2.69
37 38 4.789012 TGGATTCAGTCTTGGCAATTTC 57.211 40.909 0.00 0.00 0.00 2.17
38 39 5.750352 ATTGGATTCAGTCTTGGCAATTT 57.250 34.783 0.00 0.00 0.00 1.82
40 41 5.716228 TGTTATTGGATTCAGTCTTGGCAAT 59.284 36.000 0.00 0.00 0.00 3.56
42 43 4.661222 TGTTATTGGATTCAGTCTTGGCA 58.339 39.130 0.00 0.00 0.00 4.92
43 44 5.450965 CCATGTTATTGGATTCAGTCTTGGC 60.451 44.000 0.00 0.00 39.25 4.52
47 48 5.044919 TCACCCATGTTATTGGATTCAGTCT 60.045 40.000 0.00 0.00 39.25 3.24
49 50 5.191727 TCACCCATGTTATTGGATTCAGT 57.808 39.130 0.00 0.00 39.25 3.41
52 53 5.200483 TCCTTCACCCATGTTATTGGATTC 58.800 41.667 0.00 0.00 39.25 2.52
53 54 5.205517 TCCTTCACCCATGTTATTGGATT 57.794 39.130 0.00 0.00 39.25 3.01
54 55 4.879295 TCCTTCACCCATGTTATTGGAT 57.121 40.909 0.00 0.00 39.25 3.41
56 57 4.796606 AGATCCTTCACCCATGTTATTGG 58.203 43.478 0.00 0.00 36.46 3.16
57 58 4.823989 GGAGATCCTTCACCCATGTTATTG 59.176 45.833 0.00 0.00 0.00 1.90
58 59 4.728860 AGGAGATCCTTCACCCATGTTATT 59.271 41.667 0.00 0.00 46.09 1.40
59 60 4.310740 AGGAGATCCTTCACCCATGTTAT 58.689 43.478 0.00 0.00 46.09 1.89
60 61 3.736094 AGGAGATCCTTCACCCATGTTA 58.264 45.455 0.00 0.00 46.09 2.41
61 62 2.566746 AGGAGATCCTTCACCCATGTT 58.433 47.619 0.00 0.00 46.09 2.71
74 75 7.580495 ACTTACAAAGTCTGGATCAAGGAGATC 60.580 40.741 0.00 0.00 44.42 2.75
75 76 6.214412 ACTTACAAAGTCTGGATCAAGGAGAT 59.786 38.462 0.00 0.00 37.02 2.75
76 77 5.544176 ACTTACAAAGTCTGGATCAAGGAGA 59.456 40.000 0.00 0.00 37.02 3.71
77 78 5.799213 ACTTACAAAGTCTGGATCAAGGAG 58.201 41.667 0.00 0.00 37.02 3.69
78 79 5.825593 ACTTACAAAGTCTGGATCAAGGA 57.174 39.130 0.00 0.00 37.02 3.36
81 82 9.219603 CATCTTTACTTACAAAGTCTGGATCAA 57.780 33.333 0.00 0.00 41.77 2.57
84 85 9.965902 ATTCATCTTTACTTACAAAGTCTGGAT 57.034 29.630 0.00 0.00 41.77 3.41
85 86 9.436957 GATTCATCTTTACTTACAAAGTCTGGA 57.563 33.333 0.00 0.00 41.77 3.86
86 87 8.383619 CGATTCATCTTTACTTACAAAGTCTGG 58.616 37.037 0.00 0.00 41.77 3.86
87 88 8.383619 CCGATTCATCTTTACTTACAAAGTCTG 58.616 37.037 0.00 0.00 41.77 3.51
88 89 7.064728 GCCGATTCATCTTTACTTACAAAGTCT 59.935 37.037 0.00 0.00 41.77 3.24
90 91 6.183360 CGCCGATTCATCTTTACTTACAAAGT 60.183 38.462 0.00 0.00 45.40 2.66
91 92 6.185399 CGCCGATTCATCTTTACTTACAAAG 58.815 40.000 0.00 0.00 36.95 2.77
92 93 5.064198 CCGCCGATTCATCTTTACTTACAAA 59.936 40.000 0.00 0.00 0.00 2.83
94 95 4.116961 CCGCCGATTCATCTTTACTTACA 58.883 43.478 0.00 0.00 0.00 2.41
95 96 4.117685 ACCGCCGATTCATCTTTACTTAC 58.882 43.478 0.00 0.00 0.00 2.34
96 97 4.395959 ACCGCCGATTCATCTTTACTTA 57.604 40.909 0.00 0.00 0.00 2.24
97 98 3.261981 ACCGCCGATTCATCTTTACTT 57.738 42.857 0.00 0.00 0.00 2.24
100 101 7.383687 AGATAATAACCGCCGATTCATCTTTA 58.616 34.615 0.00 0.00 0.00 1.85
101 102 6.231211 AGATAATAACCGCCGATTCATCTTT 58.769 36.000 0.00 0.00 0.00 2.52
102 103 5.794894 AGATAATAACCGCCGATTCATCTT 58.205 37.500 0.00 0.00 0.00 2.40
103 104 5.186021 AGAGATAATAACCGCCGATTCATCT 59.814 40.000 0.00 0.00 0.00 2.90
104 105 5.289675 CAGAGATAATAACCGCCGATTCATC 59.710 44.000 0.00 0.00 0.00 2.92
105 106 5.171476 CAGAGATAATAACCGCCGATTCAT 58.829 41.667 0.00 0.00 0.00 2.57
106 107 4.038763 ACAGAGATAATAACCGCCGATTCA 59.961 41.667 0.00 0.00 0.00 2.57
107 108 4.386049 CACAGAGATAATAACCGCCGATTC 59.614 45.833 0.00 0.00 0.00 2.52
108 109 4.307432 CACAGAGATAATAACCGCCGATT 58.693 43.478 0.00 0.00 0.00 3.34
109 110 3.306088 CCACAGAGATAATAACCGCCGAT 60.306 47.826 0.00 0.00 0.00 4.18
111 112 2.223971 ACCACAGAGATAATAACCGCCG 60.224 50.000 0.00 0.00 0.00 6.46
112 113 3.131396 CACCACAGAGATAATAACCGCC 58.869 50.000 0.00 0.00 0.00 6.13
113 114 3.555956 CACACCACAGAGATAATAACCGC 59.444 47.826 0.00 0.00 0.00 5.68
114 115 4.119862 CCACACCACAGAGATAATAACCG 58.880 47.826 0.00 0.00 0.00 4.44
115 116 4.451900 CCCACACCACAGAGATAATAACC 58.548 47.826 0.00 0.00 0.00 2.85
116 117 3.877508 GCCCACACCACAGAGATAATAAC 59.122 47.826 0.00 0.00 0.00 1.89
117 118 3.521531 TGCCCACACCACAGAGATAATAA 59.478 43.478 0.00 0.00 0.00 1.40
118 119 3.111484 TGCCCACACCACAGAGATAATA 58.889 45.455 0.00 0.00 0.00 0.98
120 121 1.278985 CTGCCCACACCACAGAGATAA 59.721 52.381 0.00 0.00 33.10 1.75
121 122 0.904649 CTGCCCACACCACAGAGATA 59.095 55.000 0.00 0.00 33.10 1.98
122 123 1.130054 ACTGCCCACACCACAGAGAT 61.130 55.000 0.00 0.00 35.38 2.75
123 124 1.344953 AACTGCCCACACCACAGAGA 61.345 55.000 0.00 0.00 35.38 3.10
126 127 1.735360 CAAACTGCCCACACCACAG 59.265 57.895 0.00 0.00 37.45 3.66
127 128 1.756172 CCAAACTGCCCACACCACA 60.756 57.895 0.00 0.00 0.00 4.17
128 129 1.454847 TCCAAACTGCCCACACCAC 60.455 57.895 0.00 0.00 0.00 4.16
129 130 1.152777 CTCCAAACTGCCCACACCA 60.153 57.895 0.00 0.00 0.00 4.17
130 131 2.564721 GCTCCAAACTGCCCACACC 61.565 63.158 0.00 0.00 0.00 4.16
131 132 1.391157 TTGCTCCAAACTGCCCACAC 61.391 55.000 0.00 0.00 0.00 3.82
133 134 1.363807 GTTGCTCCAAACTGCCCAC 59.636 57.895 0.00 0.00 0.00 4.61
134 135 1.076412 TGTTGCTCCAAACTGCCCA 60.076 52.632 0.00 0.00 0.00 5.36
135 136 1.662044 CTGTTGCTCCAAACTGCCC 59.338 57.895 0.00 0.00 0.00 5.36
136 137 0.823356 TCCTGTTGCTCCAAACTGCC 60.823 55.000 0.00 0.00 0.00 4.85
138 139 2.023673 TGTTCCTGTTGCTCCAAACTG 58.976 47.619 0.00 0.00 0.00 3.16
141 142 2.733956 ACTTGTTCCTGTTGCTCCAAA 58.266 42.857 0.00 0.00 0.00 3.28
142 143 2.435372 ACTTGTTCCTGTTGCTCCAA 57.565 45.000 0.00 0.00 0.00 3.53
144 145 4.035675 GCATATACTTGTTCCTGTTGCTCC 59.964 45.833 0.00 0.00 0.00 4.70
145 146 4.635765 TGCATATACTTGTTCCTGTTGCTC 59.364 41.667 0.00 0.00 0.00 4.26
146 147 4.588899 TGCATATACTTGTTCCTGTTGCT 58.411 39.130 0.00 0.00 0.00 3.91
147 148 4.963276 TGCATATACTTGTTCCTGTTGC 57.037 40.909 0.00 0.00 0.00 4.17
148 149 5.163632 TGCATGCATATACTTGTTCCTGTTG 60.164 40.000 18.46 0.00 0.00 3.33
149 150 4.949238 TGCATGCATATACTTGTTCCTGTT 59.051 37.500 18.46 0.00 0.00 3.16
150 151 4.525996 TGCATGCATATACTTGTTCCTGT 58.474 39.130 18.46 0.00 0.00 4.00
152 153 5.039920 TCTGCATGCATATACTTGTTCCT 57.960 39.130 22.97 0.00 0.00 3.36
153 154 5.059161 TCTCTGCATGCATATACTTGTTCC 58.941 41.667 22.97 0.00 0.00 3.62
154 155 6.798315 ATCTCTGCATGCATATACTTGTTC 57.202 37.500 22.97 0.00 0.00 3.18
155 156 6.769341 TGAATCTCTGCATGCATATACTTGTT 59.231 34.615 22.97 8.25 0.00 2.83
159 160 9.327628 GATATTGAATCTCTGCATGCATATACT 57.672 33.333 22.97 6.12 0.00 2.12
160 161 9.106070 TGATATTGAATCTCTGCATGCATATAC 57.894 33.333 22.97 11.21 0.00 1.47
161 162 9.675464 TTGATATTGAATCTCTGCATGCATATA 57.325 29.630 22.97 7.28 0.00 0.86
162 163 8.459635 GTTGATATTGAATCTCTGCATGCATAT 58.540 33.333 22.97 12.41 0.00 1.78
163 164 7.094506 GGTTGATATTGAATCTCTGCATGCATA 60.095 37.037 22.97 13.76 0.00 3.14
165 166 5.009310 GGTTGATATTGAATCTCTGCATGCA 59.991 40.000 21.29 21.29 0.00 3.96
166 167 5.009310 TGGTTGATATTGAATCTCTGCATGC 59.991 40.000 11.82 11.82 0.00 4.06
167 168 6.628919 TGGTTGATATTGAATCTCTGCATG 57.371 37.500 0.00 0.00 0.00 4.06
168 169 7.834881 ATTGGTTGATATTGAATCTCTGCAT 57.165 32.000 0.00 0.00 0.00 3.96
169 170 7.467675 CGAATTGGTTGATATTGAATCTCTGCA 60.468 37.037 0.00 0.00 0.00 4.41
170 171 6.854892 CGAATTGGTTGATATTGAATCTCTGC 59.145 38.462 0.00 0.00 0.00 4.26
171 172 7.923888 ACGAATTGGTTGATATTGAATCTCTG 58.076 34.615 0.00 0.00 0.00 3.35
172 173 8.511604 AACGAATTGGTTGATATTGAATCTCT 57.488 30.769 4.92 0.00 0.00 3.10
173 174 7.584123 CGAACGAATTGGTTGATATTGAATCTC 59.416 37.037 10.82 0.00 0.00 2.75
174 175 7.279981 TCGAACGAATTGGTTGATATTGAATCT 59.720 33.333 10.82 0.00 0.00 2.40
175 176 7.406553 TCGAACGAATTGGTTGATATTGAATC 58.593 34.615 10.82 0.00 0.00 2.52
176 177 7.315247 TCGAACGAATTGGTTGATATTGAAT 57.685 32.000 10.82 0.00 0.00 2.57
177 178 6.729391 TCGAACGAATTGGTTGATATTGAA 57.271 33.333 10.82 0.00 0.00 2.69
179 180 5.909054 CCATCGAACGAATTGGTTGATATTG 59.091 40.000 10.82 4.83 0.00 1.90
180 181 5.820423 TCCATCGAACGAATTGGTTGATATT 59.180 36.000 10.82 0.00 0.00 1.28
182 183 4.760878 TCCATCGAACGAATTGGTTGATA 58.239 39.130 10.82 0.00 0.00 2.15
183 184 3.605634 TCCATCGAACGAATTGGTTGAT 58.394 40.909 10.82 10.50 0.00 2.57
184 185 3.046968 TCCATCGAACGAATTGGTTGA 57.953 42.857 10.82 8.81 0.00 3.18
186 187 4.457603 TGATTTCCATCGAACGAATTGGTT 59.542 37.500 5.44 5.44 31.08 3.67
187 188 4.006989 TGATTTCCATCGAACGAATTGGT 58.993 39.130 13.88 0.00 31.08 3.67
188 189 4.614555 TGATTTCCATCGAACGAATTGG 57.385 40.909 9.65 9.65 31.08 3.16
202 203 4.201950 CGAATGTGTTCCTGGATGATTTCC 60.202 45.833 0.00 0.00 45.69 3.13
203 204 4.635765 TCGAATGTGTTCCTGGATGATTTC 59.364 41.667 0.00 0.00 0.00 2.17
205 206 4.194640 CTCGAATGTGTTCCTGGATGATT 58.805 43.478 0.00 0.00 0.00 2.57
206 207 3.801698 CTCGAATGTGTTCCTGGATGAT 58.198 45.455 0.00 0.00 0.00 2.45
207 208 2.677902 GCTCGAATGTGTTCCTGGATGA 60.678 50.000 0.00 0.00 0.00 2.92
208 209 1.667724 GCTCGAATGTGTTCCTGGATG 59.332 52.381 0.00 0.00 0.00 3.51
209 210 1.278985 TGCTCGAATGTGTTCCTGGAT 59.721 47.619 0.00 0.00 0.00 3.41
210 211 0.684535 TGCTCGAATGTGTTCCTGGA 59.315 50.000 0.00 0.00 0.00 3.86
211 212 0.798776 GTGCTCGAATGTGTTCCTGG 59.201 55.000 0.00 0.00 0.00 4.45
212 213 1.462283 CAGTGCTCGAATGTGTTCCTG 59.538 52.381 0.00 0.00 0.00 3.86
214 215 0.798776 CCAGTGCTCGAATGTGTTCC 59.201 55.000 0.00 0.00 0.00 3.62
216 217 1.344438 TCTCCAGTGCTCGAATGTGTT 59.656 47.619 0.00 0.00 0.00 3.32
218 219 2.306341 ATCTCCAGTGCTCGAATGTG 57.694 50.000 0.00 0.00 0.00 3.21
219 220 2.419297 GGAATCTCCAGTGCTCGAATGT 60.419 50.000 0.00 0.00 36.28 2.71
221 222 1.202463 CGGAATCTCCAGTGCTCGAAT 60.202 52.381 0.00 0.00 35.91 3.34
222 223 0.173481 CGGAATCTCCAGTGCTCGAA 59.827 55.000 0.00 0.00 35.91 3.71
223 224 0.679960 TCGGAATCTCCAGTGCTCGA 60.680 55.000 0.00 0.00 35.91 4.04
224 225 0.173481 TTCGGAATCTCCAGTGCTCG 59.827 55.000 0.00 0.00 35.91 5.03
226 227 1.833630 TCATTCGGAATCTCCAGTGCT 59.166 47.619 0.00 0.00 35.91 4.40
227 228 2.159043 TCTCATTCGGAATCTCCAGTGC 60.159 50.000 0.00 0.00 35.91 4.40
228 229 3.808466 TCTCATTCGGAATCTCCAGTG 57.192 47.619 0.00 0.00 35.91 3.66
231 232 4.681781 GCTTCTTCTCATTCGGAATCTCCA 60.682 45.833 0.00 0.00 35.91 3.86
235 236 3.002144 GCTGCTTCTTCTCATTCGGAATC 59.998 47.826 0.00 0.00 0.00 2.52
236 237 2.941720 GCTGCTTCTTCTCATTCGGAAT 59.058 45.455 0.00 0.00 0.00 3.01
237 238 2.289631 TGCTGCTTCTTCTCATTCGGAA 60.290 45.455 0.00 0.00 0.00 4.30
238 239 1.276138 TGCTGCTTCTTCTCATTCGGA 59.724 47.619 0.00 0.00 0.00 4.55
239 240 1.664659 CTGCTGCTTCTTCTCATTCGG 59.335 52.381 0.00 0.00 0.00 4.30
240 241 2.344950 ACTGCTGCTTCTTCTCATTCG 58.655 47.619 0.00 0.00 0.00 3.34
242 243 3.007723 TGAGACTGCTGCTTCTTCTCATT 59.992 43.478 14.66 0.00 38.20 2.57
243 244 2.566279 TGAGACTGCTGCTTCTTCTCAT 59.434 45.455 14.66 0.00 38.20 2.90
244 245 1.966354 TGAGACTGCTGCTTCTTCTCA 59.034 47.619 14.66 14.66 40.26 3.27
245 246 2.739885 TGAGACTGCTGCTTCTTCTC 57.260 50.000 0.00 7.23 34.48 2.87
246 247 2.368221 ACTTGAGACTGCTGCTTCTTCT 59.632 45.455 0.00 0.00 0.00 2.85
248 249 2.926778 ACTTGAGACTGCTGCTTCTT 57.073 45.000 0.00 0.00 0.00 2.52
249 250 4.020751 TCAATACTTGAGACTGCTGCTTCT 60.021 41.667 0.00 2.39 34.08 2.85
250 251 4.248859 TCAATACTTGAGACTGCTGCTTC 58.751 43.478 0.00 0.00 34.08 3.86
251 252 4.277515 TCAATACTTGAGACTGCTGCTT 57.722 40.909 0.00 0.00 34.08 3.91
252 253 3.969287 TCAATACTTGAGACTGCTGCT 57.031 42.857 0.00 0.00 34.08 4.24
253 254 3.181512 GCTTCAATACTTGAGACTGCTGC 60.182 47.826 0.00 0.00 41.38 5.25
254 255 3.373439 GGCTTCAATACTTGAGACTGCTG 59.627 47.826 0.00 0.00 41.38 4.41
255 256 3.262915 AGGCTTCAATACTTGAGACTGCT 59.737 43.478 0.00 0.00 41.38 4.24
256 257 3.373439 CAGGCTTCAATACTTGAGACTGC 59.627 47.826 8.32 4.57 41.38 4.40
258 259 3.840666 TCCAGGCTTCAATACTTGAGACT 59.159 43.478 0.00 0.00 41.38 3.24
259 260 4.207891 TCCAGGCTTCAATACTTGAGAC 57.792 45.455 0.00 0.00 41.38 3.36
261 262 3.881688 CCATCCAGGCTTCAATACTTGAG 59.118 47.826 0.00 0.00 41.38 3.02
262 263 3.523157 TCCATCCAGGCTTCAATACTTGA 59.477 43.478 0.00 0.00 35.95 3.02
263 264 3.629398 GTCCATCCAGGCTTCAATACTTG 59.371 47.826 0.00 0.00 37.29 3.16
264 265 3.525199 AGTCCATCCAGGCTTCAATACTT 59.475 43.478 0.00 0.00 37.29 2.24
265 266 3.118531 AGTCCATCCAGGCTTCAATACT 58.881 45.455 0.00 0.00 37.29 2.12
266 267 3.567478 AGTCCATCCAGGCTTCAATAC 57.433 47.619 0.00 0.00 37.29 1.89
267 268 3.648067 CCTAGTCCATCCAGGCTTCAATA 59.352 47.826 0.00 0.00 37.29 1.90
268 269 2.441001 CCTAGTCCATCCAGGCTTCAAT 59.559 50.000 0.00 0.00 37.29 2.57
269 270 1.839994 CCTAGTCCATCCAGGCTTCAA 59.160 52.381 0.00 0.00 37.29 2.69
270 271 1.500474 CCTAGTCCATCCAGGCTTCA 58.500 55.000 0.00 0.00 37.29 3.02
276 277 1.340399 TGCTGGCCTAGTCCATCCAG 61.340 60.000 3.32 2.94 46.63 3.86
277 278 1.306911 TGCTGGCCTAGTCCATCCA 60.307 57.895 3.32 0.00 35.22 3.41
335 336 1.113788 CCAGCTCTTCCTCTCTCCAG 58.886 60.000 0.00 0.00 0.00 3.86
403 404 4.830046 AGTTTGCCCATGTATGTTGTGTAA 59.170 37.500 0.00 0.00 0.00 2.41
405 406 3.005684 CAGTTTGCCCATGTATGTTGTGT 59.994 43.478 0.00 0.00 0.00 3.72
409 410 3.701040 GGATCAGTTTGCCCATGTATGTT 59.299 43.478 0.00 0.00 0.00 2.71
410 411 3.290710 GGATCAGTTTGCCCATGTATGT 58.709 45.455 0.00 0.00 0.00 2.29
411 412 3.289836 TGGATCAGTTTGCCCATGTATG 58.710 45.455 0.00 0.00 0.00 2.39
412 413 3.668141 TGGATCAGTTTGCCCATGTAT 57.332 42.857 0.00 0.00 0.00 2.29
414 415 2.537633 ATGGATCAGTTTGCCCATGT 57.462 45.000 0.00 0.00 37.94 3.21
415 416 3.893200 ACATATGGATCAGTTTGCCCATG 59.107 43.478 7.80 0.00 39.52 3.66
477 1117 3.747854 TCTGCCACATTTTTGCAATCA 57.252 38.095 0.00 0.00 34.06 2.57
478 1118 4.247258 TCATCTGCCACATTTTTGCAATC 58.753 39.130 0.00 0.00 34.06 2.67
480 1120 3.747854 TCATCTGCCACATTTTTGCAA 57.252 38.095 0.00 0.00 34.06 4.08
650 1330 5.879237 ACATCATAGGTTACATTTTGCACG 58.121 37.500 0.00 0.00 0.00 5.34
683 1363 1.165270 GCACCACCGCACTTAAGAAT 58.835 50.000 10.09 0.00 0.00 2.40
762 1442 1.031571 TCTTTAGCGGCCTGGCAATG 61.032 55.000 22.05 10.67 34.64 2.82
764 1444 0.960364 CTTCTTTAGCGGCCTGGCAA 60.960 55.000 22.05 2.65 34.64 4.52
765 1445 1.377202 CTTCTTTAGCGGCCTGGCA 60.377 57.895 22.05 0.00 34.64 4.92
766 1446 0.676782 TTCTTCTTTAGCGGCCTGGC 60.677 55.000 11.05 11.05 0.00 4.85
769 1449 1.903183 ACTCTTCTTCTTTAGCGGCCT 59.097 47.619 0.00 0.00 0.00 5.19
770 1450 2.388310 ACTCTTCTTCTTTAGCGGCC 57.612 50.000 0.00 0.00 0.00 6.13
771 1451 4.676018 CGTATACTCTTCTTCTTTAGCGGC 59.324 45.833 0.56 0.00 0.00 6.53
772 1452 6.057627 TCGTATACTCTTCTTCTTTAGCGG 57.942 41.667 0.56 0.00 0.00 5.52
774 1454 6.414402 CGGTTCGTATACTCTTCTTCTTTAGC 59.586 42.308 0.56 0.00 0.00 3.09
775 1455 7.470900 ACGGTTCGTATACTCTTCTTCTTTAG 58.529 38.462 0.56 0.00 38.73 1.85
776 1456 7.383102 ACGGTTCGTATACTCTTCTTCTTTA 57.617 36.000 0.56 0.00 38.73 1.85
777 1457 6.264841 ACGGTTCGTATACTCTTCTTCTTT 57.735 37.500 0.56 0.00 38.73 2.52
794 4045 7.357859 CGTCGTAGAATTCCATATAAACGGTTC 60.358 40.741 0.65 0.00 39.69 3.62
796 4047 5.916883 CGTCGTAGAATTCCATATAAACGGT 59.083 40.000 0.65 0.00 39.69 4.83
803 4056 4.537135 ATGGCGTCGTAGAATTCCATAT 57.463 40.909 0.65 0.00 39.29 1.78
804 4057 5.647589 GATATGGCGTCGTAGAATTCCATA 58.352 41.667 0.65 7.62 43.33 2.74
896 4150 0.320858 TGCGGCGACTTGGTATTTCA 60.321 50.000 12.98 0.00 0.00 2.69
924 4178 1.004745 GGAAGGGAGGAAGTTGCATGA 59.995 52.381 0.00 0.00 0.00 3.07
938 4192 0.106894 GGCGTGGAGATTAGGAAGGG 59.893 60.000 0.00 0.00 0.00 3.95
939 4193 1.123928 AGGCGTGGAGATTAGGAAGG 58.876 55.000 0.00 0.00 0.00 3.46
940 4194 2.483889 GGAAGGCGTGGAGATTAGGAAG 60.484 54.545 0.00 0.00 0.00 3.46
941 4195 1.485066 GGAAGGCGTGGAGATTAGGAA 59.515 52.381 0.00 0.00 0.00 3.36
942 4196 1.120530 GGAAGGCGTGGAGATTAGGA 58.879 55.000 0.00 0.00 0.00 2.94
947 4201 2.427245 CGGAGGAAGGCGTGGAGAT 61.427 63.158 0.00 0.00 0.00 2.75
959 4213 1.694150 GATGGATGGATCAACGGAGGA 59.306 52.381 0.00 0.00 0.00 3.71
960 4214 1.606480 CGATGGATGGATCAACGGAGG 60.606 57.143 0.00 0.00 0.00 4.30
962 4216 1.068588 GTCGATGGATGGATCAACGGA 59.931 52.381 0.00 0.00 0.00 4.69
963 4217 1.502231 GTCGATGGATGGATCAACGG 58.498 55.000 0.00 0.00 0.00 4.44
964 4218 1.502231 GGTCGATGGATGGATCAACG 58.498 55.000 0.00 0.00 0.00 4.10
965 4219 1.502231 CGGTCGATGGATGGATCAAC 58.498 55.000 0.00 0.00 0.00 3.18
966 4220 0.249868 GCGGTCGATGGATGGATCAA 60.250 55.000 0.00 0.00 0.00 2.57
967 4221 1.115326 AGCGGTCGATGGATGGATCA 61.115 55.000 0.00 0.00 0.00 2.92
968 4222 0.034059 AAGCGGTCGATGGATGGATC 59.966 55.000 0.00 0.00 0.00 3.36
969 4223 0.034059 GAAGCGGTCGATGGATGGAT 59.966 55.000 0.00 0.00 0.00 3.41
973 4227 1.742768 GGAGAAGCGGTCGATGGAT 59.257 57.895 0.00 0.00 0.00 3.41
986 4240 5.009710 CCTATATATAATGCGCGAGGGAGAA 59.990 44.000 12.10 0.00 0.00 2.87
1069 4330 1.138661 CTGGGTTTTGGCAATGTGTGT 59.861 47.619 0.00 0.00 0.00 3.72
1123 4409 5.095097 ACCTTAGCTTTCTTCTAACCCTCT 58.905 41.667 0.00 0.00 0.00 3.69
1166 4459 0.541764 AGATCGAGCCTCATCCTCCC 60.542 60.000 0.00 0.00 0.00 4.30
1448 4761 5.434514 CAAAAACACGTTGGAACTTGAAG 57.565 39.130 3.25 0.00 33.00 3.02
1474 4790 3.798511 GAGCCTACCACCTGGGGC 61.799 72.222 0.00 0.01 42.91 5.80
1498 4814 1.499049 GAATCCAATCCTACGGTCGC 58.501 55.000 0.00 0.00 0.00 5.19
1503 4819 2.550978 AGCAACGAATCCAATCCTACG 58.449 47.619 0.00 0.00 0.00 3.51
1590 4909 7.224522 ACGTACTATATGTGTATCCTTTCCC 57.775 40.000 0.00 0.00 0.00 3.97
1591 4910 8.457261 CCTACGTACTATATGTGTATCCTTTCC 58.543 40.741 0.00 0.00 0.00 3.13
1596 4915 9.393512 AGAATCCTACGTACTATATGTGTATCC 57.606 37.037 0.00 0.00 0.00 2.59
1651 4978 9.734620 TTAAATACAAATGTATTGCTGATGCTC 57.265 29.630 17.08 0.00 46.98 4.26
1777 5134 6.884280 ATACAGAACTTTTCTTGGTCAAGG 57.116 37.500 10.39 0.00 38.11 3.61
1799 5156 4.213270 ACGCATGCATACGTAGCAAAATAT 59.787 37.500 23.01 0.00 46.27 1.28
1832 5190 4.312443 AGGCATGCATTTGTCTCAAAAAG 58.688 39.130 21.36 0.00 0.00 2.27
1848 5206 2.093288 TCAGCTTCCACTTCTAGGCATG 60.093 50.000 0.00 0.00 0.00 4.06
1855 5213 2.693069 CGAATGTCAGCTTCCACTTCT 58.307 47.619 0.00 0.00 0.00 2.85
1880 5238 1.303948 CATGAGGCCATGGGTGACA 59.696 57.895 15.13 0.00 44.88 3.58
1920 5278 2.282827 CCTCACACGTGGGGTCATA 58.717 57.895 19.60 0.00 46.17 2.15
2092 5450 5.758337 CAGCTACGGTGAACTGAGGTCAG 62.758 56.522 0.00 5.40 40.44 3.51
2152 5532 0.387929 TTCGATGGTCCTATGTCCGC 59.612 55.000 0.00 0.00 0.00 5.54
2164 5544 2.562635 TCTCTCTAGTCCGTTCGATGG 58.437 52.381 0.00 0.00 0.00 3.51
2165 5545 3.623960 ACTTCTCTCTAGTCCGTTCGATG 59.376 47.826 0.00 0.00 0.00 3.84
2166 5546 3.876341 ACTTCTCTCTAGTCCGTTCGAT 58.124 45.455 0.00 0.00 0.00 3.59
2167 5547 3.331478 ACTTCTCTCTAGTCCGTTCGA 57.669 47.619 0.00 0.00 0.00 3.71
2169 5549 7.369607 ACTTTTTACTTCTCTCTAGTCCGTTC 58.630 38.462 0.00 0.00 0.00 3.95
2170 5550 7.287512 ACTTTTTACTTCTCTCTAGTCCGTT 57.712 36.000 0.00 0.00 0.00 4.44
2173 5553 9.978044 TTGTTACTTTTTACTTCTCTCTAGTCC 57.022 33.333 0.00 0.00 0.00 3.85
2210 5593 3.560636 AAGATATGAGGGGTTCGGTTG 57.439 47.619 0.00 0.00 0.00 3.77
2214 5597 5.746990 ATAGGAAAGATATGAGGGGTTCG 57.253 43.478 0.00 0.00 0.00 3.95
2216 5599 6.082707 ACGTATAGGAAAGATATGAGGGGTT 58.917 40.000 0.00 0.00 0.00 4.11
2229 5612 2.684881 GACAGTCCGGACGTATAGGAAA 59.315 50.000 28.26 0.00 35.60 3.13
2231 5614 1.475751 GGACAGTCCGGACGTATAGGA 60.476 57.143 28.26 2.43 36.20 2.94
2246 5629 0.389391 ATATGAGGGTTCGCGGACAG 59.611 55.000 21.18 0.00 0.00 3.51
2251 5634 1.273606 AGATGGATATGAGGGTTCGCG 59.726 52.381 0.00 0.00 0.00 5.87
2254 5637 7.555554 CCATATTTGAGATGGATATGAGGGTTC 59.444 40.741 0.00 0.00 45.89 3.62
2266 5649 4.942363 ATCCTCCCCATATTTGAGATGG 57.058 45.455 0.00 0.00 43.12 3.51
2279 5662 0.178891 TGAGCCCTCATATCCTCCCC 60.179 60.000 0.00 0.00 34.14 4.81
2309 5692 4.657824 ACAGACCGAACACGCCCG 62.658 66.667 0.00 0.00 0.00 6.13
2346 5729 3.891366 GAGAAAATGTGGTATGGGATGGG 59.109 47.826 0.00 0.00 0.00 4.00
2397 5782 3.881089 GTGCATGTGAATGATGGAGATGA 59.119 43.478 0.00 0.00 0.00 2.92
2398 5783 3.303791 CGTGCATGTGAATGATGGAGATG 60.304 47.826 0.00 0.00 0.00 2.90
2399 5784 2.876550 CGTGCATGTGAATGATGGAGAT 59.123 45.455 0.00 0.00 0.00 2.75
2401 5786 2.011947 ACGTGCATGTGAATGATGGAG 58.988 47.619 11.65 0.00 0.00 3.86
2402 5787 1.738908 CACGTGCATGTGAATGATGGA 59.261 47.619 31.17 0.00 42.55 3.41
2403 5788 1.738908 TCACGTGCATGTGAATGATGG 59.261 47.619 33.96 10.48 45.40 3.51
2434 5823 6.685527 ACCACACTCTTTCTTTTCTTTCTC 57.314 37.500 0.00 0.00 0.00 2.87
2445 5834 2.032178 GTCTGCACAACCACACTCTTTC 59.968 50.000 0.00 0.00 0.00 2.62
2446 5835 2.017049 GTCTGCACAACCACACTCTTT 58.983 47.619 0.00 0.00 0.00 2.52
2447 5836 1.065491 TGTCTGCACAACCACACTCTT 60.065 47.619 0.00 0.00 0.00 2.85
2448 5837 0.541392 TGTCTGCACAACCACACTCT 59.459 50.000 0.00 0.00 0.00 3.24
2449 5838 0.940126 CTGTCTGCACAACCACACTC 59.060 55.000 0.00 0.00 29.82 3.51
2450 5839 0.541392 TCTGTCTGCACAACCACACT 59.459 50.000 0.00 0.00 29.82 3.55
2452 5841 3.483808 TTATCTGTCTGCACAACCACA 57.516 42.857 0.00 0.00 29.82 4.17
2455 5844 5.009010 CCCATATTTATCTGTCTGCACAACC 59.991 44.000 0.00 0.00 29.82 3.77
2457 5846 5.754782 ACCCATATTTATCTGTCTGCACAA 58.245 37.500 0.00 0.00 29.82 3.33
2461 5850 6.942532 TTGAACCCATATTTATCTGTCTGC 57.057 37.500 0.00 0.00 0.00 4.26
2463 5852 7.610305 ACGTTTTGAACCCATATTTATCTGTCT 59.390 33.333 0.00 0.00 0.00 3.41
2464 5853 7.696453 CACGTTTTGAACCCATATTTATCTGTC 59.304 37.037 0.00 0.00 0.00 3.51
2466 5855 7.696453 GTCACGTTTTGAACCCATATTTATCTG 59.304 37.037 0.00 0.00 35.39 2.90
2467 5856 7.148137 GGTCACGTTTTGAACCCATATTTATCT 60.148 37.037 0.00 0.00 35.66 1.98
2468 5857 6.970613 GGTCACGTTTTGAACCCATATTTATC 59.029 38.462 0.00 0.00 35.66 1.75
2476 5865 0.107800 TCGGTCACGTTTTGAACCCA 60.108 50.000 0.00 0.00 38.97 4.51
2477 5866 0.584876 CTCGGTCACGTTTTGAACCC 59.415 55.000 0.00 0.00 38.97 4.11
2480 5869 0.806884 ACGCTCGGTCACGTTTTGAA 60.807 50.000 0.00 0.00 40.09 2.69
2482 5871 1.083657 CACGCTCGGTCACGTTTTG 60.084 57.895 0.00 0.00 41.32 2.44
2504 5908 4.543590 ATTCGTCTCCTCAAATGTCTGT 57.456 40.909 0.00 0.00 0.00 3.41
2506 5910 6.595716 CCTTTAATTCGTCTCCTCAAATGTCT 59.404 38.462 0.00 0.00 0.00 3.41
2507 5911 6.371825 ACCTTTAATTCGTCTCCTCAAATGTC 59.628 38.462 0.00 0.00 0.00 3.06
2510 5914 6.534079 CGTACCTTTAATTCGTCTCCTCAAAT 59.466 38.462 0.00 0.00 0.00 2.32
2517 5921 5.454877 CAGCTACGTACCTTTAATTCGTCTC 59.545 44.000 0.00 0.00 36.24 3.36
2518 5922 5.124457 TCAGCTACGTACCTTTAATTCGTCT 59.876 40.000 0.00 0.00 36.24 4.18
2520 5924 5.314923 TCAGCTACGTACCTTTAATTCGT 57.685 39.130 0.00 0.00 38.30 3.85
2521 5925 6.032094 TCTTCAGCTACGTACCTTTAATTCG 58.968 40.000 0.00 0.00 0.00 3.34
2522 5926 7.516943 GCATCTTCAGCTACGTACCTTTAATTC 60.517 40.741 0.00 0.00 0.00 2.17
2531 5935 5.805994 AGTAAAAGCATCTTCAGCTACGTAC 59.194 40.000 0.00 0.00 42.53 3.67
2532 5936 5.962433 AGTAAAAGCATCTTCAGCTACGTA 58.038 37.500 0.00 0.00 42.53 3.57
2537 5941 5.555017 TGAGAAGTAAAAGCATCTTCAGCT 58.445 37.500 0.00 0.00 45.97 4.24
2539 5943 7.846644 AGATGAGAAGTAAAAGCATCTTCAG 57.153 36.000 0.00 0.00 41.99 3.02
2550 5954 6.863645 CACTGACGAGAAAGATGAGAAGTAAA 59.136 38.462 0.00 0.00 0.00 2.01
2552 5956 5.106118 CCACTGACGAGAAAGATGAGAAGTA 60.106 44.000 0.00 0.00 0.00 2.24
2556 5960 2.094494 GCCACTGACGAGAAAGATGAGA 60.094 50.000 0.00 0.00 0.00 3.27
2590 5994 2.334977 TCACTGCCTAAAGGAAGACCA 58.665 47.619 11.23 0.00 44.07 4.02
2604 6008 1.076332 GTTGGTCCGTACATCACTGC 58.924 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.