Multiple sequence alignment - TraesCS7B01G106000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G106000 chr7B 100.000 3619 0 0 1 3619 122623540 122627158 0.000000e+00 6684.0
1 TraesCS7B01G106000 chr7B 99.056 2437 23 0 717 3153 476795152 476792716 0.000000e+00 4373.0
2 TraesCS7B01G106000 chr3A 98.967 2904 30 0 716 3619 57277798 57274895 0.000000e+00 5197.0
3 TraesCS7B01G106000 chr3A 91.139 79 6 1 159 236 680732779 680732857 4.940000e-19 106.0
4 TraesCS7B01G106000 chr5B 98.863 2903 33 0 717 3619 339081373 339084275 0.000000e+00 5179.0
5 TraesCS7B01G106000 chr2B 98.863 2903 29 4 717 3619 165276629 165279527 0.000000e+00 5175.0
6 TraesCS7B01G106000 chr2B 94.961 2064 62 22 1586 3619 178741887 178743938 0.000000e+00 3197.0
7 TraesCS7B01G106000 chr2B 92.525 495 28 6 232 717 197992606 197993100 0.000000e+00 701.0
8 TraesCS7B01G106000 chr2B 90.476 273 14 6 1 261 197992402 197992674 2.070000e-92 350.0
9 TraesCS7B01G106000 chr5A 98.732 2918 22 1 717 3619 69232548 69229631 0.000000e+00 5169.0
10 TraesCS7B01G106000 chr4A 98.698 2918 23 1 717 3619 644772685 644769768 0.000000e+00 5164.0
11 TraesCS7B01G106000 chr4A 90.698 430 35 5 291 717 154317778 154318205 5.240000e-158 568.0
12 TraesCS7B01G106000 chr1A 98.295 2933 19 2 717 3619 521287689 521284758 0.000000e+00 5110.0
13 TraesCS7B01G106000 chr1A 98.158 2931 22 3 720 3619 500074427 500071498 0.000000e+00 5084.0
14 TraesCS7B01G106000 chr1A 98.218 2918 32 4 715 3619 582543181 582540271 0.000000e+00 5083.0
15 TraesCS7B01G106000 chr6A 98.285 2915 31 3 717 3619 175630095 175633002 0.000000e+00 5088.0
16 TraesCS7B01G106000 chr6A 98.370 2392 24 1 717 3093 97398564 97396173 0.000000e+00 4187.0
17 TraesCS7B01G106000 chr6A 89.796 490 33 11 235 717 457094406 457093927 2.390000e-171 612.0
18 TraesCS7B01G106000 chr3B 97.467 2921 32 6 712 3619 344147572 344144681 0.000000e+00 4946.0
19 TraesCS7B01G106000 chr3B 91.335 427 34 3 294 717 719422742 719423168 6.740000e-162 580.0
20 TraesCS7B01G106000 chr3B 89.873 79 7 1 159 236 719422656 719422734 2.300000e-17 100.0
21 TraesCS7B01G106000 chr6B 91.781 730 36 5 1 717 666090731 666090013 0.000000e+00 994.0
22 TraesCS7B01G106000 chr2D 91.163 430 34 4 291 717 74518439 74518867 6.740000e-162 580.0
23 TraesCS7B01G106000 chr2D 90.509 432 33 7 291 717 31398231 31397803 6.780000e-157 564.0
24 TraesCS7B01G106000 chr2D 90.233 430 38 4 291 717 9184653 9185081 3.160000e-155 558.0
25 TraesCS7B01G106000 chr2D 88.608 79 8 1 159 236 9184565 9184643 1.070000e-15 95.3
26 TraesCS7B01G106000 chr2D 88.608 79 7 2 159 236 31398318 31398241 1.070000e-15 95.3
27 TraesCS7B01G106000 chr2D 88.608 79 8 1 159 236 74518351 74518429 1.070000e-15 95.3
28 TraesCS7B01G106000 chr3D 92.219 347 25 2 291 635 543767987 543768333 1.170000e-134 490.0
29 TraesCS7B01G106000 chr3D 94.643 56 3 0 662 717 543768337 543768392 1.790000e-13 87.9
30 TraesCS7B01G106000 chr6D 90.566 371 22 8 235 601 319289183 319288822 2.530000e-131 479.0
31 TraesCS7B01G106000 chr1B 91.935 310 18 4 408 717 484886854 484886552 9.290000e-116 427.0
32 TraesCS7B01G106000 chr1D 90.909 66 6 0 652 717 309980952 309981017 4.980000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G106000 chr7B 122623540 122627158 3618 False 6684.00 6684 100.0000 1 3619 1 chr7B.!!$F1 3618
1 TraesCS7B01G106000 chr7B 476792716 476795152 2436 True 4373.00 4373 99.0560 717 3153 1 chr7B.!!$R1 2436
2 TraesCS7B01G106000 chr3A 57274895 57277798 2903 True 5197.00 5197 98.9670 716 3619 1 chr3A.!!$R1 2903
3 TraesCS7B01G106000 chr5B 339081373 339084275 2902 False 5179.00 5179 98.8630 717 3619 1 chr5B.!!$F1 2902
4 TraesCS7B01G106000 chr2B 165276629 165279527 2898 False 5175.00 5175 98.8630 717 3619 1 chr2B.!!$F1 2902
5 TraesCS7B01G106000 chr2B 178741887 178743938 2051 False 3197.00 3197 94.9610 1586 3619 1 chr2B.!!$F2 2033
6 TraesCS7B01G106000 chr2B 197992402 197993100 698 False 525.50 701 91.5005 1 717 2 chr2B.!!$F3 716
7 TraesCS7B01G106000 chr5A 69229631 69232548 2917 True 5169.00 5169 98.7320 717 3619 1 chr5A.!!$R1 2902
8 TraesCS7B01G106000 chr4A 644769768 644772685 2917 True 5164.00 5164 98.6980 717 3619 1 chr4A.!!$R1 2902
9 TraesCS7B01G106000 chr1A 521284758 521287689 2931 True 5110.00 5110 98.2950 717 3619 1 chr1A.!!$R2 2902
10 TraesCS7B01G106000 chr1A 500071498 500074427 2929 True 5084.00 5084 98.1580 720 3619 1 chr1A.!!$R1 2899
11 TraesCS7B01G106000 chr1A 582540271 582543181 2910 True 5083.00 5083 98.2180 715 3619 1 chr1A.!!$R3 2904
12 TraesCS7B01G106000 chr6A 175630095 175633002 2907 False 5088.00 5088 98.2850 717 3619 1 chr6A.!!$F1 2902
13 TraesCS7B01G106000 chr6A 97396173 97398564 2391 True 4187.00 4187 98.3700 717 3093 1 chr6A.!!$R1 2376
14 TraesCS7B01G106000 chr3B 344144681 344147572 2891 True 4946.00 4946 97.4670 712 3619 1 chr3B.!!$R1 2907
15 TraesCS7B01G106000 chr3B 719422656 719423168 512 False 340.00 580 90.6040 159 717 2 chr3B.!!$F1 558
16 TraesCS7B01G106000 chr6B 666090013 666090731 718 True 994.00 994 91.7810 1 717 1 chr6B.!!$R1 716
17 TraesCS7B01G106000 chr2D 74518351 74518867 516 False 337.65 580 89.8855 159 717 2 chr2D.!!$F2 558
18 TraesCS7B01G106000 chr2D 31397803 31398318 515 True 329.65 564 89.5585 159 717 2 chr2D.!!$R1 558
19 TraesCS7B01G106000 chr2D 9184565 9185081 516 False 326.65 558 89.4205 159 717 2 chr2D.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 588 0.034896 TTCTCACAAGAGCCGGGTTC 59.965 55.0 8.00 2.18 41.81 3.62 F
619 635 0.107459 GACCATGGAGGCAGGAAGTC 60.107 60.0 21.47 0.00 43.14 3.01 F
690 706 0.179150 CGGACGAGGAGCAAGAAGAG 60.179 60.0 0.00 0.00 0.00 2.85 F
691 707 0.459411 GGACGAGGAGCAAGAAGAGC 60.459 60.0 0.00 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1401 2.170166 CATGCTAAAAACCTCCTGCCA 58.830 47.619 0.0 0.0 0.00 4.92 R
1865 1882 5.105187 TGTCAGATGGTGGATAGTGAAAGAG 60.105 44.000 0.0 0.0 0.00 2.85 R
2144 2173 9.487790 TCTTTCATTTTGTTCAACTTCAAGTTT 57.512 25.926 0.0 0.0 36.03 2.66 R
2855 2929 5.982890 ATATTTGTGCTTGGCTTAGTTGT 57.017 34.783 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.893753 TCCCCTTGAAACCTCAAATCA 57.106 42.857 0.00 0.00 41.05 2.57
24 25 4.402616 TCCCCTTGAAACCTCAAATCAT 57.597 40.909 0.00 0.00 41.05 2.45
26 27 4.044571 TCCCCTTGAAACCTCAAATCATCT 59.955 41.667 0.00 0.00 41.05 2.90
78 79 5.047092 ACATTGTTTGACAGGGATGGATTTC 60.047 40.000 0.00 0.00 0.00 2.17
80 81 3.075882 TGTTTGACAGGGATGGATTTCCT 59.924 43.478 0.00 0.00 35.97 3.36
88 89 6.686544 ACAGGGATGGATTTCCTTATTGAAT 58.313 36.000 0.00 0.00 35.97 2.57
144 156 8.554835 TTCTTCGTATCCACAACATAATTTGA 57.445 30.769 0.00 0.00 0.00 2.69
157 169 8.299570 ACAACATAATTTGATTGACTTGGACTC 58.700 33.333 3.16 0.00 0.00 3.36
212 225 7.687941 ACTAACAAGGAACCAACAATATCAG 57.312 36.000 0.00 0.00 0.00 2.90
253 266 5.163195 GGGACAGGACCAACAATATCAGTAT 60.163 44.000 0.00 0.00 0.00 2.12
254 267 5.992217 GGACAGGACCAACAATATCAGTATC 59.008 44.000 0.00 0.00 0.00 2.24
255 268 5.930135 ACAGGACCAACAATATCAGTATCC 58.070 41.667 0.00 0.00 0.00 2.59
256 269 5.428457 ACAGGACCAACAATATCAGTATCCA 59.572 40.000 0.00 0.00 0.00 3.41
257 270 6.101734 ACAGGACCAACAATATCAGTATCCAT 59.898 38.462 0.00 0.00 0.00 3.41
258 271 7.000472 CAGGACCAACAATATCAGTATCCATT 59.000 38.462 0.00 0.00 0.00 3.16
259 272 7.000472 AGGACCAACAATATCAGTATCCATTG 59.000 38.462 0.00 0.00 35.10 2.82
260 273 6.998074 GGACCAACAATATCAGTATCCATTGA 59.002 38.462 0.00 0.00 33.56 2.57
261 274 7.502226 GGACCAACAATATCAGTATCCATTGAA 59.498 37.037 0.00 0.00 33.56 2.69
262 275 8.225603 ACCAACAATATCAGTATCCATTGAAC 57.774 34.615 0.00 0.00 33.56 3.18
263 276 7.285401 ACCAACAATATCAGTATCCATTGAACC 59.715 37.037 0.00 0.00 33.56 3.62
264 277 7.285172 CCAACAATATCAGTATCCATTGAACCA 59.715 37.037 0.00 0.00 33.56 3.67
265 278 8.685427 CAACAATATCAGTATCCATTGAACCAA 58.315 33.333 0.00 0.00 33.56 3.67
266 279 8.225603 ACAATATCAGTATCCATTGAACCAAC 57.774 34.615 0.00 0.00 33.56 3.77
267 280 7.833682 ACAATATCAGTATCCATTGAACCAACA 59.166 33.333 0.00 0.00 33.56 3.33
268 281 8.685427 CAATATCAGTATCCATTGAACCAACAA 58.315 33.333 0.00 0.00 31.44 2.83
269 282 9.425248 AATATCAGTATCCATTGAACCAACAAT 57.575 29.630 0.00 0.00 40.50 2.71
271 284 7.624360 TCAGTATCCATTGAACCAACAATAC 57.376 36.000 0.00 0.00 38.25 1.89
272 285 6.601613 TCAGTATCCATTGAACCAACAATACC 59.398 38.462 0.00 0.00 38.25 2.73
273 286 6.376864 CAGTATCCATTGAACCAACAATACCA 59.623 38.462 0.00 0.00 38.25 3.25
274 287 6.951198 AGTATCCATTGAACCAACAATACCAA 59.049 34.615 0.00 0.00 38.25 3.67
275 288 5.461032 TCCATTGAACCAACAATACCAAC 57.539 39.130 0.00 0.00 38.25 3.77
276 289 4.895889 TCCATTGAACCAACAATACCAACA 59.104 37.500 0.00 0.00 38.25 3.33
277 290 5.363868 TCCATTGAACCAACAATACCAACAA 59.636 36.000 0.00 0.00 38.25 2.83
278 291 6.042552 TCCATTGAACCAACAATACCAACAAT 59.957 34.615 0.00 0.00 38.25 2.71
279 292 7.233553 TCCATTGAACCAACAATACCAACAATA 59.766 33.333 0.00 0.00 38.25 1.90
280 293 8.040132 CCATTGAACCAACAATACCAACAATAT 58.960 33.333 0.00 0.00 38.25 1.28
281 294 9.086336 CATTGAACCAACAATACCAACAATATC 57.914 33.333 0.00 0.00 38.25 1.63
282 295 7.767250 TGAACCAACAATACCAACAATATCA 57.233 32.000 0.00 0.00 0.00 2.15
283 296 8.183104 TGAACCAACAATACCAACAATATCAA 57.817 30.769 0.00 0.00 0.00 2.57
284 297 8.811017 TGAACCAACAATACCAACAATATCAAT 58.189 29.630 0.00 0.00 0.00 2.57
361 375 5.696724 CCCTCTAATTATTTACTGTCAGCCG 59.303 44.000 0.00 0.00 0.00 5.52
427 443 8.633075 ATGTTGACAGACAAAACTAAACAATG 57.367 30.769 0.00 0.00 40.36 2.82
428 444 7.598278 TGTTGACAGACAAAACTAAACAATGT 58.402 30.769 0.00 0.00 40.36 2.71
429 445 8.085296 TGTTGACAGACAAAACTAAACAATGTT 58.915 29.630 0.00 0.00 40.36 2.71
430 446 8.583765 GTTGACAGACAAAACTAAACAATGTTC 58.416 33.333 0.00 0.00 40.36 3.18
431 447 7.821652 TGACAGACAAAACTAAACAATGTTCA 58.178 30.769 0.00 0.00 0.00 3.18
432 448 8.465999 TGACAGACAAAACTAAACAATGTTCAT 58.534 29.630 0.00 0.00 0.00 2.57
433 449 8.633075 ACAGACAAAACTAAACAATGTTCATG 57.367 30.769 0.00 0.00 0.00 3.07
434 450 8.250332 ACAGACAAAACTAAACAATGTTCATGT 58.750 29.630 0.00 0.00 32.62 3.21
435 451 8.533965 CAGACAAAACTAAACAATGTTCATGTG 58.466 33.333 0.00 0.00 31.21 3.21
436 452 8.465999 AGACAAAACTAAACAATGTTCATGTGA 58.534 29.630 0.00 0.00 31.21 3.58
437 453 8.994429 ACAAAACTAAACAATGTTCATGTGAA 57.006 26.923 0.00 0.00 30.47 3.18
438 454 9.429359 ACAAAACTAAACAATGTTCATGTGAAA 57.571 25.926 0.00 0.00 35.58 2.69
442 458 9.651913 AACTAAACAATGTTCATGTGAAAAAGT 57.348 25.926 0.00 0.00 35.58 2.66
443 459 9.651913 ACTAAACAATGTTCATGTGAAAAAGTT 57.348 25.926 0.00 0.18 35.58 2.66
445 461 8.545229 AAACAATGTTCATGTGAAAAAGTTCA 57.455 26.923 0.00 0.00 41.57 3.18
446 462 8.721019 AACAATGTTCATGTGAAAAAGTTCAT 57.279 26.923 0.00 0.00 45.38 2.57
447 463 8.356533 ACAATGTTCATGTGAAAAAGTTCATC 57.643 30.769 0.00 0.00 45.38 2.92
448 464 7.439056 ACAATGTTCATGTGAAAAAGTTCATCC 59.561 33.333 0.00 0.00 45.38 3.51
449 465 6.462552 TGTTCATGTGAAAAAGTTCATCCA 57.537 33.333 0.00 0.00 45.38 3.41
450 466 6.506147 TGTTCATGTGAAAAAGTTCATCCAG 58.494 36.000 0.00 0.00 45.38 3.86
451 467 5.710513 TCATGTGAAAAAGTTCATCCAGG 57.289 39.130 0.00 0.00 45.38 4.45
452 468 4.523943 TCATGTGAAAAAGTTCATCCAGGG 59.476 41.667 0.00 0.00 45.38 4.45
453 469 4.177537 TGTGAAAAAGTTCATCCAGGGA 57.822 40.909 0.00 0.00 45.38 4.20
454 470 3.888930 TGTGAAAAAGTTCATCCAGGGAC 59.111 43.478 0.00 0.00 45.38 4.46
455 471 3.255888 GTGAAAAAGTTCATCCAGGGACC 59.744 47.826 0.00 0.00 45.38 4.46
456 472 3.140144 TGAAAAAGTTCATCCAGGGACCT 59.860 43.478 0.00 0.00 38.88 3.85
457 473 3.903530 AAAAGTTCATCCAGGGACCTT 57.096 42.857 0.00 0.00 0.00 3.50
458 474 2.887151 AAGTTCATCCAGGGACCTTG 57.113 50.000 0.00 0.00 0.00 3.61
459 475 0.995024 AGTTCATCCAGGGACCTTGG 59.005 55.000 16.63 16.63 0.00 3.61
460 476 0.698818 GTTCATCCAGGGACCTTGGT 59.301 55.000 21.37 7.16 0.00 3.67
461 477 1.075536 GTTCATCCAGGGACCTTGGTT 59.924 52.381 21.37 11.31 0.00 3.67
462 478 2.307686 GTTCATCCAGGGACCTTGGTTA 59.692 50.000 21.37 4.50 0.00 2.85
463 479 2.638325 TCATCCAGGGACCTTGGTTAA 58.362 47.619 21.37 3.74 0.00 2.01
464 480 2.307686 TCATCCAGGGACCTTGGTTAAC 59.692 50.000 21.37 0.00 0.00 2.01
465 481 2.127651 TCCAGGGACCTTGGTTAACT 57.872 50.000 21.37 0.00 0.00 2.24
466 482 1.702957 TCCAGGGACCTTGGTTAACTG 59.297 52.381 21.37 3.05 0.00 3.16
467 483 1.423921 CCAGGGACCTTGGTTAACTGT 59.576 52.381 14.59 0.00 0.00 3.55
468 484 2.552373 CCAGGGACCTTGGTTAACTGTC 60.552 54.545 14.59 7.41 0.00 3.51
469 485 2.105821 CAGGGACCTTGGTTAACTGTCA 59.894 50.000 5.42 0.00 0.00 3.58
470 486 2.781174 AGGGACCTTGGTTAACTGTCAA 59.219 45.455 5.42 0.79 0.00 3.18
471 487 3.397955 AGGGACCTTGGTTAACTGTCAAT 59.602 43.478 5.42 0.00 0.00 2.57
472 488 3.506067 GGGACCTTGGTTAACTGTCAATG 59.494 47.826 5.42 1.81 0.00 2.82
473 489 4.142038 GGACCTTGGTTAACTGTCAATGT 58.858 43.478 5.42 4.87 0.00 2.71
474 490 5.310451 GGACCTTGGTTAACTGTCAATGTA 58.690 41.667 5.42 0.00 0.00 2.29
475 491 5.766174 GGACCTTGGTTAACTGTCAATGTAA 59.234 40.000 5.42 0.00 0.00 2.41
476 492 6.263617 GGACCTTGGTTAACTGTCAATGTAAA 59.736 38.462 5.42 0.00 0.00 2.01
477 493 7.201839 GGACCTTGGTTAACTGTCAATGTAAAA 60.202 37.037 5.42 0.00 0.00 1.52
478 494 7.712797 ACCTTGGTTAACTGTCAATGTAAAAG 58.287 34.615 5.42 0.00 0.00 2.27
479 495 6.640907 CCTTGGTTAACTGTCAATGTAAAAGC 59.359 38.462 5.42 0.00 0.00 3.51
480 496 6.952773 TGGTTAACTGTCAATGTAAAAGCT 57.047 33.333 5.42 0.00 0.00 3.74
481 497 6.966021 TGGTTAACTGTCAATGTAAAAGCTC 58.034 36.000 5.42 0.00 0.00 4.09
482 498 6.544197 TGGTTAACTGTCAATGTAAAAGCTCA 59.456 34.615 5.42 0.00 0.00 4.26
483 499 7.230510 TGGTTAACTGTCAATGTAAAAGCTCAT 59.769 33.333 5.42 0.00 0.00 2.90
484 500 7.750903 GGTTAACTGTCAATGTAAAAGCTCATC 59.249 37.037 5.42 0.00 0.00 2.92
485 501 5.886960 ACTGTCAATGTAAAAGCTCATCC 57.113 39.130 0.00 0.00 0.00 3.51
486 502 5.316167 ACTGTCAATGTAAAAGCTCATCCA 58.684 37.500 0.00 0.00 0.00 3.41
487 503 5.413833 ACTGTCAATGTAAAAGCTCATCCAG 59.586 40.000 0.00 0.00 0.00 3.86
488 504 5.559770 TGTCAATGTAAAAGCTCATCCAGA 58.440 37.500 0.00 0.00 0.00 3.86
489 505 6.003326 TGTCAATGTAAAAGCTCATCCAGAA 58.997 36.000 0.00 0.00 0.00 3.02
490 506 6.489700 TGTCAATGTAAAAGCTCATCCAGAAA 59.510 34.615 0.00 0.00 0.00 2.52
491 507 6.803807 GTCAATGTAAAAGCTCATCCAGAAAC 59.196 38.462 0.00 0.00 0.00 2.78
492 508 6.489700 TCAATGTAAAAGCTCATCCAGAAACA 59.510 34.615 0.00 0.00 0.00 2.83
493 509 5.689383 TGTAAAAGCTCATCCAGAAACAC 57.311 39.130 0.00 0.00 0.00 3.32
494 510 4.518970 TGTAAAAGCTCATCCAGAAACACC 59.481 41.667 0.00 0.00 0.00 4.16
495 511 3.515602 AAAGCTCATCCAGAAACACCT 57.484 42.857 0.00 0.00 0.00 4.00
496 512 3.515602 AAGCTCATCCAGAAACACCTT 57.484 42.857 0.00 0.00 0.00 3.50
497 513 4.640771 AAGCTCATCCAGAAACACCTTA 57.359 40.909 0.00 0.00 0.00 2.69
498 514 4.640771 AGCTCATCCAGAAACACCTTAA 57.359 40.909 0.00 0.00 0.00 1.85
499 515 5.184892 AGCTCATCCAGAAACACCTTAAT 57.815 39.130 0.00 0.00 0.00 1.40
500 516 5.574188 AGCTCATCCAGAAACACCTTAATT 58.426 37.500 0.00 0.00 0.00 1.40
501 517 6.012745 AGCTCATCCAGAAACACCTTAATTT 58.987 36.000 0.00 0.00 0.00 1.82
502 518 6.151817 AGCTCATCCAGAAACACCTTAATTTC 59.848 38.462 0.00 0.00 35.46 2.17
503 519 6.151817 GCTCATCCAGAAACACCTTAATTTCT 59.848 38.462 0.00 0.00 44.19 2.52
510 526 7.639113 AGAAACACCTTAATTTCTGTCAACA 57.361 32.000 1.83 0.00 42.27 3.33
511 527 8.237811 AGAAACACCTTAATTTCTGTCAACAT 57.762 30.769 1.83 0.00 42.27 2.71
512 528 8.137437 AGAAACACCTTAATTTCTGTCAACATG 58.863 33.333 1.83 0.00 42.27 3.21
513 529 7.581213 AACACCTTAATTTCTGTCAACATGA 57.419 32.000 0.00 0.00 0.00 3.07
514 530 7.581213 ACACCTTAATTTCTGTCAACATGAA 57.419 32.000 0.00 0.00 0.00 2.57
515 531 8.006298 ACACCTTAATTTCTGTCAACATGAAA 57.994 30.769 0.00 8.93 34.75 2.69
516 532 8.474025 ACACCTTAATTTCTGTCAACATGAAAA 58.526 29.630 0.00 1.95 34.09 2.29
517 533 8.755018 CACCTTAATTTCTGTCAACATGAAAAC 58.245 33.333 0.00 0.00 34.09 2.43
518 534 7.926018 ACCTTAATTTCTGTCAACATGAAAACC 59.074 33.333 0.00 0.00 34.09 3.27
519 535 7.384932 CCTTAATTTCTGTCAACATGAAAACCC 59.615 37.037 0.00 0.00 34.09 4.11
520 536 5.867903 ATTTCTGTCAACATGAAAACCCA 57.132 34.783 0.00 0.00 34.09 4.51
521 537 4.647424 TTCTGTCAACATGAAAACCCAC 57.353 40.909 0.00 0.00 0.00 4.61
522 538 3.625853 TCTGTCAACATGAAAACCCACA 58.374 40.909 0.00 0.00 0.00 4.17
523 539 3.380004 TCTGTCAACATGAAAACCCACAC 59.620 43.478 0.00 0.00 0.00 3.82
524 540 3.360867 TGTCAACATGAAAACCCACACT 58.639 40.909 0.00 0.00 0.00 3.55
525 541 3.766591 TGTCAACATGAAAACCCACACTT 59.233 39.130 0.00 0.00 0.00 3.16
526 542 4.142271 TGTCAACATGAAAACCCACACTTC 60.142 41.667 0.00 0.00 0.00 3.01
527 543 4.097892 GTCAACATGAAAACCCACACTTCT 59.902 41.667 0.00 0.00 0.00 2.85
528 544 5.298276 GTCAACATGAAAACCCACACTTCTA 59.702 40.000 0.00 0.00 0.00 2.10
529 545 6.016276 GTCAACATGAAAACCCACACTTCTAT 60.016 38.462 0.00 0.00 0.00 1.98
530 546 6.206634 TCAACATGAAAACCCACACTTCTATC 59.793 38.462 0.00 0.00 0.00 2.08
531 547 5.630121 ACATGAAAACCCACACTTCTATCA 58.370 37.500 0.00 0.00 0.00 2.15
532 548 6.068010 ACATGAAAACCCACACTTCTATCAA 58.932 36.000 0.00 0.00 0.00 2.57
533 549 6.549364 ACATGAAAACCCACACTTCTATCAAA 59.451 34.615 0.00 0.00 0.00 2.69
534 550 7.069331 ACATGAAAACCCACACTTCTATCAAAA 59.931 33.333 0.00 0.00 0.00 2.44
535 551 7.595819 TGAAAACCCACACTTCTATCAAAAT 57.404 32.000 0.00 0.00 0.00 1.82
536 552 8.017418 TGAAAACCCACACTTCTATCAAAATT 57.983 30.769 0.00 0.00 0.00 1.82
537 553 8.141268 TGAAAACCCACACTTCTATCAAAATTC 58.859 33.333 0.00 0.00 0.00 2.17
538 554 7.595819 AAACCCACACTTCTATCAAAATTCA 57.404 32.000 0.00 0.00 0.00 2.57
539 555 7.595819 AACCCACACTTCTATCAAAATTCAA 57.404 32.000 0.00 0.00 0.00 2.69
540 556 7.595819 ACCCACACTTCTATCAAAATTCAAA 57.404 32.000 0.00 0.00 0.00 2.69
541 557 8.193953 ACCCACACTTCTATCAAAATTCAAAT 57.806 30.769 0.00 0.00 0.00 2.32
542 558 8.306761 ACCCACACTTCTATCAAAATTCAAATC 58.693 33.333 0.00 0.00 0.00 2.17
543 559 8.306038 CCCACACTTCTATCAAAATTCAAATCA 58.694 33.333 0.00 0.00 0.00 2.57
544 560 9.695526 CCACACTTCTATCAAAATTCAAATCAA 57.304 29.630 0.00 0.00 0.00 2.57
546 562 9.918630 ACACTTCTATCAAAATTCAAATCAAGG 57.081 29.630 0.00 0.00 0.00 3.61
552 568 9.362539 CTATCAAAATTCAAATCAAGGAACTGG 57.637 33.333 0.00 0.00 40.86 4.00
553 569 7.123355 TCAAAATTCAAATCAAGGAACTGGT 57.877 32.000 0.00 0.00 40.86 4.00
554 570 7.563906 TCAAAATTCAAATCAAGGAACTGGTT 58.436 30.769 0.00 0.00 40.86 3.67
555 571 7.710475 TCAAAATTCAAATCAAGGAACTGGTTC 59.290 33.333 5.02 5.02 40.86 3.62
556 572 6.983906 AATTCAAATCAAGGAACTGGTTCT 57.016 33.333 12.34 0.00 40.86 3.01
557 573 6.581171 ATTCAAATCAAGGAACTGGTTCTC 57.419 37.500 12.34 4.26 40.86 2.87
558 574 5.047566 TCAAATCAAGGAACTGGTTCTCA 57.952 39.130 12.34 0.00 40.86 3.27
559 575 4.821805 TCAAATCAAGGAACTGGTTCTCAC 59.178 41.667 12.34 0.00 40.86 3.51
560 576 4.437682 AATCAAGGAACTGGTTCTCACA 57.562 40.909 12.34 0.00 40.86 3.58
561 577 3.924114 TCAAGGAACTGGTTCTCACAA 57.076 42.857 12.34 0.00 40.86 3.33
562 578 3.808728 TCAAGGAACTGGTTCTCACAAG 58.191 45.455 12.34 0.00 40.86 3.16
563 579 3.454447 TCAAGGAACTGGTTCTCACAAGA 59.546 43.478 12.34 2.07 40.86 3.02
564 580 3.760580 AGGAACTGGTTCTCACAAGAG 57.239 47.619 12.34 0.00 39.77 2.85
565 581 2.147150 GGAACTGGTTCTCACAAGAGC 58.853 52.381 12.34 0.00 41.81 4.09
568 584 4.285851 GGTTCTCACAAGAGCCGG 57.714 61.111 0.00 0.00 42.22 6.13
569 585 1.376037 GGTTCTCACAAGAGCCGGG 60.376 63.158 2.18 0.00 42.22 5.73
570 586 1.371558 GTTCTCACAAGAGCCGGGT 59.628 57.895 5.45 5.45 41.81 5.28
571 587 0.250338 GTTCTCACAAGAGCCGGGTT 60.250 55.000 8.00 0.00 41.81 4.11
572 588 0.034896 TTCTCACAAGAGCCGGGTTC 59.965 55.000 8.00 2.18 41.81 3.62
573 589 1.376037 CTCACAAGAGCCGGGTTCC 60.376 63.158 8.00 0.00 34.61 3.62
574 590 2.111999 CTCACAAGAGCCGGGTTCCA 62.112 60.000 8.00 0.00 34.61 3.53
575 591 1.228124 CACAAGAGCCGGGTTCCAA 60.228 57.895 8.00 0.00 0.00 3.53
576 592 0.609131 CACAAGAGCCGGGTTCCAAT 60.609 55.000 8.00 0.00 0.00 3.16
577 593 0.609131 ACAAGAGCCGGGTTCCAATG 60.609 55.000 8.00 5.60 0.00 2.82
578 594 0.322456 CAAGAGCCGGGTTCCAATGA 60.322 55.000 8.00 0.00 0.00 2.57
579 595 0.625849 AAGAGCCGGGTTCCAATGAT 59.374 50.000 8.00 0.00 0.00 2.45
580 596 0.625849 AGAGCCGGGTTCCAATGATT 59.374 50.000 8.00 0.00 0.00 2.57
581 597 1.005924 AGAGCCGGGTTCCAATGATTT 59.994 47.619 8.00 0.00 0.00 2.17
582 598 1.824852 GAGCCGGGTTCCAATGATTTT 59.175 47.619 8.00 0.00 0.00 1.82
583 599 1.824852 AGCCGGGTTCCAATGATTTTC 59.175 47.619 0.00 0.00 0.00 2.29
584 600 1.548269 GCCGGGTTCCAATGATTTTCA 59.452 47.619 2.18 0.00 0.00 2.69
585 601 2.417243 GCCGGGTTCCAATGATTTTCAG 60.417 50.000 2.18 0.00 0.00 3.02
586 602 2.166254 CCGGGTTCCAATGATTTTCAGG 59.834 50.000 0.00 0.00 0.00 3.86
587 603 3.088532 CGGGTTCCAATGATTTTCAGGA 58.911 45.455 0.00 0.00 0.00 3.86
588 604 3.129287 CGGGTTCCAATGATTTTCAGGAG 59.871 47.826 0.00 0.00 0.00 3.69
589 605 4.344104 GGGTTCCAATGATTTTCAGGAGA 58.656 43.478 0.00 0.00 0.00 3.71
590 606 4.400567 GGGTTCCAATGATTTTCAGGAGAG 59.599 45.833 0.00 0.00 0.00 3.20
591 607 4.400567 GGTTCCAATGATTTTCAGGAGAGG 59.599 45.833 0.00 0.00 0.00 3.69
592 608 5.256474 GTTCCAATGATTTTCAGGAGAGGA 58.744 41.667 0.00 0.00 0.00 3.71
593 609 5.108187 TCCAATGATTTTCAGGAGAGGAG 57.892 43.478 0.00 0.00 0.00 3.69
594 610 4.784838 TCCAATGATTTTCAGGAGAGGAGA 59.215 41.667 0.00 0.00 0.00 3.71
595 611 5.104610 TCCAATGATTTTCAGGAGAGGAGAG 60.105 44.000 0.00 0.00 0.00 3.20
596 612 5.124645 CAATGATTTTCAGGAGAGGAGAGG 58.875 45.833 0.00 0.00 0.00 3.69
597 613 3.110705 TGATTTTCAGGAGAGGAGAGGG 58.889 50.000 0.00 0.00 0.00 4.30
598 614 3.246130 TGATTTTCAGGAGAGGAGAGGGA 60.246 47.826 0.00 0.00 0.00 4.20
599 615 3.498614 TTTTCAGGAGAGGAGAGGGAT 57.501 47.619 0.00 0.00 0.00 3.85
600 616 2.468301 TTCAGGAGAGGAGAGGGATG 57.532 55.000 0.00 0.00 0.00 3.51
601 617 1.613241 TCAGGAGAGGAGAGGGATGA 58.387 55.000 0.00 0.00 0.00 2.92
602 618 1.216678 TCAGGAGAGGAGAGGGATGAC 59.783 57.143 0.00 0.00 0.00 3.06
603 619 0.560688 AGGAGAGGAGAGGGATGACC 59.439 60.000 0.00 0.00 40.67 4.02
604 620 0.263172 GGAGAGGAGAGGGATGACCA 59.737 60.000 0.00 0.00 43.89 4.02
605 621 1.132881 GGAGAGGAGAGGGATGACCAT 60.133 57.143 0.00 0.00 43.89 3.55
606 622 1.969923 GAGAGGAGAGGGATGACCATG 59.030 57.143 0.00 0.00 43.89 3.66
607 623 1.055040 GAGGAGAGGGATGACCATGG 58.945 60.000 11.19 11.19 43.89 3.66
608 624 0.644380 AGGAGAGGGATGACCATGGA 59.356 55.000 21.47 0.00 43.89 3.41
609 625 1.055040 GGAGAGGGATGACCATGGAG 58.945 60.000 21.47 0.00 43.89 3.86
610 626 1.055040 GAGAGGGATGACCATGGAGG 58.945 60.000 21.47 0.00 43.89 4.30
611 627 1.059006 AGAGGGATGACCATGGAGGC 61.059 60.000 21.47 7.92 43.89 4.70
612 628 1.308128 AGGGATGACCATGGAGGCA 60.308 57.895 21.47 13.73 43.89 4.75
613 629 1.150081 GGGATGACCATGGAGGCAG 59.850 63.158 21.47 0.00 43.14 4.85
614 630 1.150081 GGATGACCATGGAGGCAGG 59.850 63.158 21.47 0.00 43.14 4.85
615 631 1.348008 GGATGACCATGGAGGCAGGA 61.348 60.000 21.47 0.00 43.14 3.86
616 632 0.548031 GATGACCATGGAGGCAGGAA 59.452 55.000 21.47 0.00 43.14 3.36
617 633 0.549950 ATGACCATGGAGGCAGGAAG 59.450 55.000 21.47 0.00 43.14 3.46
618 634 0.842030 TGACCATGGAGGCAGGAAGT 60.842 55.000 21.47 0.00 43.14 3.01
619 635 0.107459 GACCATGGAGGCAGGAAGTC 60.107 60.000 21.47 0.00 43.14 3.01
620 636 0.548682 ACCATGGAGGCAGGAAGTCT 60.549 55.000 21.47 0.00 43.14 3.24
626 642 3.289797 AGGCAGGAAGTCTCATCGA 57.710 52.632 0.00 0.00 0.00 3.59
627 643 1.786937 AGGCAGGAAGTCTCATCGAT 58.213 50.000 0.00 0.00 0.00 3.59
628 644 1.411977 AGGCAGGAAGTCTCATCGATG 59.588 52.381 19.61 19.61 0.00 3.84
629 645 1.539929 GGCAGGAAGTCTCATCGATGG 60.540 57.143 24.61 15.28 0.00 3.51
630 646 1.410517 GCAGGAAGTCTCATCGATGGA 59.589 52.381 24.61 17.23 0.00 3.41
631 647 2.801342 GCAGGAAGTCTCATCGATGGAC 60.801 54.545 26.51 26.51 0.00 4.02
632 648 1.678627 AGGAAGTCTCATCGATGGACG 59.321 52.381 26.93 17.26 44.09 4.79
633 649 1.482278 GAAGTCTCATCGATGGACGC 58.518 55.000 26.93 22.08 42.26 5.19
634 650 0.817654 AAGTCTCATCGATGGACGCA 59.182 50.000 26.93 11.01 42.26 5.24
635 651 0.817654 AGTCTCATCGATGGACGCAA 59.182 50.000 26.93 10.43 42.26 4.85
636 652 0.924090 GTCTCATCGATGGACGCAAC 59.076 55.000 24.61 10.37 42.26 4.17
637 653 0.530288 TCTCATCGATGGACGCAACA 59.470 50.000 24.61 2.33 42.26 3.33
638 654 1.067213 TCTCATCGATGGACGCAACAA 60.067 47.619 24.61 1.59 42.26 2.83
639 655 1.731709 CTCATCGATGGACGCAACAAA 59.268 47.619 24.61 0.85 42.26 2.83
640 656 1.463056 TCATCGATGGACGCAACAAAC 59.537 47.619 24.61 0.00 42.26 2.93
641 657 1.464608 CATCGATGGACGCAACAAACT 59.535 47.619 17.96 0.00 42.26 2.66
642 658 2.442212 TCGATGGACGCAACAAACTA 57.558 45.000 0.00 0.00 42.26 2.24
643 659 2.967362 TCGATGGACGCAACAAACTAT 58.033 42.857 0.00 0.00 42.26 2.12
644 660 3.331150 TCGATGGACGCAACAAACTATT 58.669 40.909 0.00 0.00 42.26 1.73
645 661 3.369756 TCGATGGACGCAACAAACTATTC 59.630 43.478 0.00 0.00 42.26 1.75
646 662 3.124466 CGATGGACGCAACAAACTATTCA 59.876 43.478 0.00 0.00 34.51 2.57
647 663 4.651994 GATGGACGCAACAAACTATTCAG 58.348 43.478 0.00 0.00 0.00 3.02
648 664 3.734463 TGGACGCAACAAACTATTCAGA 58.266 40.909 0.00 0.00 0.00 3.27
649 665 4.323417 TGGACGCAACAAACTATTCAGAT 58.677 39.130 0.00 0.00 0.00 2.90
650 666 4.391830 TGGACGCAACAAACTATTCAGATC 59.608 41.667 0.00 0.00 0.00 2.75
651 667 4.492570 GGACGCAACAAACTATTCAGATCG 60.493 45.833 0.00 0.00 0.00 3.69
652 668 4.242475 ACGCAACAAACTATTCAGATCGA 58.758 39.130 0.00 0.00 0.00 3.59
653 669 4.327357 ACGCAACAAACTATTCAGATCGAG 59.673 41.667 0.00 0.00 0.00 4.04
654 670 4.582459 GCAACAAACTATTCAGATCGAGC 58.418 43.478 0.00 0.00 0.00 5.03
655 671 4.494855 GCAACAAACTATTCAGATCGAGCC 60.495 45.833 0.00 0.00 0.00 4.70
656 672 4.471904 ACAAACTATTCAGATCGAGCCA 57.528 40.909 0.00 0.00 0.00 4.75
657 673 5.028549 ACAAACTATTCAGATCGAGCCAT 57.971 39.130 0.00 0.00 0.00 4.40
658 674 4.813161 ACAAACTATTCAGATCGAGCCATG 59.187 41.667 0.00 0.00 0.00 3.66
659 675 3.037431 ACTATTCAGATCGAGCCATGC 57.963 47.619 0.00 0.00 0.00 4.06
660 676 2.289320 ACTATTCAGATCGAGCCATGCC 60.289 50.000 0.00 0.00 0.00 4.40
661 677 0.250640 ATTCAGATCGAGCCATGCCC 60.251 55.000 0.00 0.00 0.00 5.36
662 678 2.649245 TTCAGATCGAGCCATGCCCG 62.649 60.000 0.00 0.00 0.00 6.13
663 679 4.615815 AGATCGAGCCATGCCCGC 62.616 66.667 0.00 0.00 0.00 6.13
664 680 4.615815 GATCGAGCCATGCCCGCT 62.616 66.667 0.00 0.00 39.95 5.52
665 681 4.923942 ATCGAGCCATGCCCGCTG 62.924 66.667 0.00 0.00 36.48 5.18
678 694 4.778415 CGCTGGGTGTCGGACGAG 62.778 72.222 3.34 0.00 0.00 4.18
679 695 4.436998 GCTGGGTGTCGGACGAGG 62.437 72.222 3.34 0.00 0.00 4.63
680 696 2.675423 CTGGGTGTCGGACGAGGA 60.675 66.667 3.34 0.00 0.00 3.71
681 697 2.675423 TGGGTGTCGGACGAGGAG 60.675 66.667 3.34 0.00 0.00 3.69
682 698 4.131088 GGGTGTCGGACGAGGAGC 62.131 72.222 3.34 0.00 0.00 4.70
683 699 3.371063 GGTGTCGGACGAGGAGCA 61.371 66.667 3.34 0.00 0.00 4.26
684 700 2.649034 GTGTCGGACGAGGAGCAA 59.351 61.111 3.34 0.00 0.00 3.91
685 701 1.444553 GTGTCGGACGAGGAGCAAG 60.445 63.158 3.34 0.00 0.00 4.01
686 702 1.602605 TGTCGGACGAGGAGCAAGA 60.603 57.895 3.34 0.00 0.00 3.02
687 703 1.176619 TGTCGGACGAGGAGCAAGAA 61.177 55.000 3.34 0.00 0.00 2.52
688 704 0.456995 GTCGGACGAGGAGCAAGAAG 60.457 60.000 0.00 0.00 0.00 2.85
689 705 0.608308 TCGGACGAGGAGCAAGAAGA 60.608 55.000 0.00 0.00 0.00 2.87
690 706 0.179150 CGGACGAGGAGCAAGAAGAG 60.179 60.000 0.00 0.00 0.00 2.85
691 707 0.459411 GGACGAGGAGCAAGAAGAGC 60.459 60.000 0.00 0.00 0.00 4.09
692 708 0.459411 GACGAGGAGCAAGAAGAGCC 60.459 60.000 0.00 0.00 0.00 4.70
693 709 1.188219 ACGAGGAGCAAGAAGAGCCA 61.188 55.000 0.00 0.00 0.00 4.75
694 710 0.459934 CGAGGAGCAAGAAGAGCCAG 60.460 60.000 0.00 0.00 0.00 4.85
695 711 0.744057 GAGGAGCAAGAAGAGCCAGC 60.744 60.000 0.00 0.00 0.00 4.85
696 712 1.200092 AGGAGCAAGAAGAGCCAGCT 61.200 55.000 0.00 0.00 38.43 4.24
697 713 2.766239 GAGCAAGAAGAGCCAGCTC 58.234 57.895 11.78 11.78 43.95 4.09
706 722 3.467776 GAGCCAGCTCTAGGGTTTG 57.532 57.895 12.42 0.00 39.80 2.93
707 723 0.615850 GAGCCAGCTCTAGGGTTTGT 59.384 55.000 12.42 0.00 39.80 2.83
708 724 1.831736 GAGCCAGCTCTAGGGTTTGTA 59.168 52.381 12.42 0.00 39.80 2.41
709 725 1.834263 AGCCAGCTCTAGGGTTTGTAG 59.166 52.381 0.00 0.00 31.69 2.74
710 726 1.134371 GCCAGCTCTAGGGTTTGTAGG 60.134 57.143 0.00 0.00 0.00 3.18
786 802 5.241949 TGGTACCACGATTGCTAATTTTTGT 59.758 36.000 11.60 0.00 0.00 2.83
1707 1724 9.713713 TTGTGTAATTACTTGCTGTATGAACTA 57.286 29.630 16.33 0.00 0.00 2.24
1865 1882 5.006386 AGGGTGAATGACAATCTTGAGAAC 58.994 41.667 0.00 0.00 0.00 3.01
2144 2173 3.216800 AGCTCAAGCAACAGTCATTCAA 58.783 40.909 4.59 0.00 45.16 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.257039 GGGATGTGTGGCTGGAAGAT 59.743 55.000 0.00 0.00 34.07 2.40
24 25 1.685224 GGGATGTGTGGCTGGAAGA 59.315 57.895 0.00 0.00 34.07 2.87
26 27 1.434513 AAGGGGATGTGTGGCTGGAA 61.435 55.000 0.00 0.00 0.00 3.53
96 97 9.463443 AGAATTGTTGCAAGATTAGTTTTACAC 57.537 29.630 0.00 0.00 0.00 2.90
144 156 7.069085 CCATCCATAAATTGAGTCCAAGTCAAT 59.931 37.037 4.54 4.54 46.95 2.57
157 169 5.046014 TGTTTTGGTCCCCATCCATAAATTG 60.046 40.000 0.00 0.00 34.75 2.32
184 197 9.391006 GATATTGTTGGTTCCTTGTTAGTATGA 57.609 33.333 0.00 0.00 0.00 2.15
192 205 6.828785 GGATACTGATATTGTTGGTTCCTTGT 59.171 38.462 0.00 0.00 0.00 3.16
193 206 6.828273 TGGATACTGATATTGTTGGTTCCTTG 59.172 38.462 0.00 0.00 37.61 3.61
212 225 5.105756 CCTGTCCCTTTGTTTCAATGGATAC 60.106 44.000 13.52 11.57 0.00 2.24
253 266 4.895889 TGTTGGTATTGTTGGTTCAATGGA 59.104 37.500 0.00 0.00 38.32 3.41
254 267 5.207110 TGTTGGTATTGTTGGTTCAATGG 57.793 39.130 0.00 0.00 38.32 3.16
255 268 9.086336 GATATTGTTGGTATTGTTGGTTCAATG 57.914 33.333 0.00 0.00 38.32 2.82
256 269 8.811017 TGATATTGTTGGTATTGTTGGTTCAAT 58.189 29.630 0.00 0.00 40.50 2.57
257 270 8.183104 TGATATTGTTGGTATTGTTGGTTCAA 57.817 30.769 0.00 0.00 0.00 2.69
258 271 7.767250 TGATATTGTTGGTATTGTTGGTTCA 57.233 32.000 0.00 0.00 0.00 3.18
262 275 9.912634 GGATATTGATATTGTTGGTATTGTTGG 57.087 33.333 0.00 0.00 0.00 3.77
280 293 6.516693 CTGCGTAGTAGGTCAATGGATATTGA 60.517 42.308 0.00 0.00 42.37 2.57
281 294 5.538118 TGCGTAGTAGGTCAATGGATATTG 58.462 41.667 0.00 0.00 44.03 1.90
282 295 5.784177 CTGCGTAGTAGGTCAATGGATATT 58.216 41.667 0.00 0.00 36.31 1.28
283 296 5.392767 CTGCGTAGTAGGTCAATGGATAT 57.607 43.478 0.00 0.00 36.31 1.63
284 297 4.848562 CTGCGTAGTAGGTCAATGGATA 57.151 45.455 0.00 0.00 36.31 2.59
285 298 3.735237 CTGCGTAGTAGGTCAATGGAT 57.265 47.619 0.00 0.00 36.31 3.41
358 372 2.595009 CTAGAAGCAAGGTCCCCGGC 62.595 65.000 0.00 0.00 0.00 6.13
361 375 0.542333 GGACTAGAAGCAAGGTCCCC 59.458 60.000 0.00 0.00 41.48 4.81
420 436 8.545229 TGAACTTTTTCACATGAACATTGTTT 57.455 26.923 0.00 0.00 36.79 2.83
425 441 7.053316 TGGATGAACTTTTTCACATGAACAT 57.947 32.000 0.00 0.00 44.66 2.71
426 442 6.461370 CCTGGATGAACTTTTTCACATGAACA 60.461 38.462 0.00 0.00 44.66 3.18
427 443 5.922544 CCTGGATGAACTTTTTCACATGAAC 59.077 40.000 0.00 0.00 44.66 3.18
428 444 5.010922 CCCTGGATGAACTTTTTCACATGAA 59.989 40.000 0.00 0.00 44.66 2.57
429 445 4.523943 CCCTGGATGAACTTTTTCACATGA 59.476 41.667 0.00 0.00 44.66 3.07
430 446 4.523943 TCCCTGGATGAACTTTTTCACATG 59.476 41.667 0.00 0.00 44.66 3.21
431 447 4.524328 GTCCCTGGATGAACTTTTTCACAT 59.476 41.667 0.00 0.00 44.66 3.21
432 448 3.888930 GTCCCTGGATGAACTTTTTCACA 59.111 43.478 0.00 0.00 44.66 3.58
433 449 3.255888 GGTCCCTGGATGAACTTTTTCAC 59.744 47.826 0.00 0.00 44.66 3.18
434 450 3.140144 AGGTCCCTGGATGAACTTTTTCA 59.860 43.478 0.00 0.00 45.93 2.69
435 451 3.767711 AGGTCCCTGGATGAACTTTTTC 58.232 45.455 0.00 0.00 0.00 2.29
436 452 3.897505 CAAGGTCCCTGGATGAACTTTTT 59.102 43.478 0.00 0.00 37.67 1.94
437 453 3.500343 CAAGGTCCCTGGATGAACTTTT 58.500 45.455 0.00 0.00 37.67 2.27
438 454 2.225117 CCAAGGTCCCTGGATGAACTTT 60.225 50.000 0.00 0.00 37.67 2.66
439 455 1.355720 CCAAGGTCCCTGGATGAACTT 59.644 52.381 0.00 0.00 40.33 2.66
440 456 0.995024 CCAAGGTCCCTGGATGAACT 59.005 55.000 0.00 0.00 0.00 3.01
441 457 0.698818 ACCAAGGTCCCTGGATGAAC 59.301 55.000 13.90 0.00 0.00 3.18
442 458 1.455822 AACCAAGGTCCCTGGATGAA 58.544 50.000 13.90 0.00 0.00 2.57
443 459 2.307686 GTTAACCAAGGTCCCTGGATGA 59.692 50.000 13.90 0.00 0.00 2.92
444 460 2.308866 AGTTAACCAAGGTCCCTGGATG 59.691 50.000 13.90 0.00 0.00 3.51
445 461 2.308866 CAGTTAACCAAGGTCCCTGGAT 59.691 50.000 13.90 3.89 0.00 3.41
446 462 1.702957 CAGTTAACCAAGGTCCCTGGA 59.297 52.381 13.90 0.00 0.00 3.86
447 463 1.423921 ACAGTTAACCAAGGTCCCTGG 59.576 52.381 4.82 4.82 0.00 4.45
448 464 2.105821 TGACAGTTAACCAAGGTCCCTG 59.894 50.000 0.88 9.76 0.00 4.45
449 465 2.414612 TGACAGTTAACCAAGGTCCCT 58.585 47.619 0.88 0.00 0.00 4.20
450 466 2.943036 TGACAGTTAACCAAGGTCCC 57.057 50.000 0.88 0.00 0.00 4.46
451 467 4.142038 ACATTGACAGTTAACCAAGGTCC 58.858 43.478 0.88 0.00 30.32 4.46
452 468 6.870971 TTACATTGACAGTTAACCAAGGTC 57.129 37.500 13.96 11.53 36.43 3.85
453 469 7.648039 TTTTACATTGACAGTTAACCAAGGT 57.352 32.000 14.65 14.65 38.22 3.50
454 470 6.640907 GCTTTTACATTGACAGTTAACCAAGG 59.359 38.462 0.88 4.25 0.00 3.61
455 471 7.425606 AGCTTTTACATTGACAGTTAACCAAG 58.574 34.615 0.88 0.00 0.00 3.61
456 472 7.067615 TGAGCTTTTACATTGACAGTTAACCAA 59.932 33.333 0.88 0.00 0.00 3.67
457 473 6.544197 TGAGCTTTTACATTGACAGTTAACCA 59.456 34.615 0.88 0.00 0.00 3.67
458 474 6.966021 TGAGCTTTTACATTGACAGTTAACC 58.034 36.000 0.88 0.00 0.00 2.85
459 475 7.750903 GGATGAGCTTTTACATTGACAGTTAAC 59.249 37.037 0.00 0.00 0.00 2.01
460 476 7.446931 TGGATGAGCTTTTACATTGACAGTTAA 59.553 33.333 0.00 0.00 0.00 2.01
461 477 6.939730 TGGATGAGCTTTTACATTGACAGTTA 59.060 34.615 0.00 0.00 0.00 2.24
462 478 5.769662 TGGATGAGCTTTTACATTGACAGTT 59.230 36.000 0.00 0.00 0.00 3.16
463 479 5.316167 TGGATGAGCTTTTACATTGACAGT 58.684 37.500 0.00 0.00 0.00 3.55
464 480 5.645067 TCTGGATGAGCTTTTACATTGACAG 59.355 40.000 0.00 0.00 0.00 3.51
465 481 5.559770 TCTGGATGAGCTTTTACATTGACA 58.440 37.500 0.00 0.00 0.00 3.58
466 482 6.500684 TTCTGGATGAGCTTTTACATTGAC 57.499 37.500 0.00 0.00 0.00 3.18
467 483 6.489700 TGTTTCTGGATGAGCTTTTACATTGA 59.510 34.615 0.00 0.00 0.00 2.57
468 484 6.583806 GTGTTTCTGGATGAGCTTTTACATTG 59.416 38.462 0.00 0.00 0.00 2.82
469 485 6.294731 GGTGTTTCTGGATGAGCTTTTACATT 60.295 38.462 0.00 0.00 0.00 2.71
470 486 5.183904 GGTGTTTCTGGATGAGCTTTTACAT 59.816 40.000 0.00 0.00 0.00 2.29
471 487 4.518970 GGTGTTTCTGGATGAGCTTTTACA 59.481 41.667 0.00 0.00 0.00 2.41
472 488 4.762251 AGGTGTTTCTGGATGAGCTTTTAC 59.238 41.667 0.00 0.00 0.00 2.01
473 489 4.985538 AGGTGTTTCTGGATGAGCTTTTA 58.014 39.130 0.00 0.00 0.00 1.52
474 490 3.837355 AGGTGTTTCTGGATGAGCTTTT 58.163 40.909 0.00 0.00 0.00 2.27
475 491 3.515602 AGGTGTTTCTGGATGAGCTTT 57.484 42.857 0.00 0.00 0.00 3.51
476 492 3.515602 AAGGTGTTTCTGGATGAGCTT 57.484 42.857 0.00 0.00 0.00 3.74
477 493 4.640771 TTAAGGTGTTTCTGGATGAGCT 57.359 40.909 0.00 0.00 0.00 4.09
478 494 5.904362 AATTAAGGTGTTTCTGGATGAGC 57.096 39.130 0.00 0.00 0.00 4.26
479 495 7.693969 AGAAATTAAGGTGTTTCTGGATGAG 57.306 36.000 1.83 0.00 41.67 2.90
486 502 7.639113 TGTTGACAGAAATTAAGGTGTTTCT 57.361 32.000 0.00 0.00 43.44 2.52
487 503 8.134895 TCATGTTGACAGAAATTAAGGTGTTTC 58.865 33.333 0.00 0.00 35.18 2.78
488 504 8.006298 TCATGTTGACAGAAATTAAGGTGTTT 57.994 30.769 0.00 0.00 0.00 2.83
489 505 7.581213 TCATGTTGACAGAAATTAAGGTGTT 57.419 32.000 0.00 0.00 0.00 3.32
490 506 7.581213 TTCATGTTGACAGAAATTAAGGTGT 57.419 32.000 0.00 0.00 0.00 4.16
491 507 8.755018 GTTTTCATGTTGACAGAAATTAAGGTG 58.245 33.333 0.00 0.00 32.00 4.00
492 508 7.926018 GGTTTTCATGTTGACAGAAATTAAGGT 59.074 33.333 0.00 0.00 32.00 3.50
493 509 7.384932 GGGTTTTCATGTTGACAGAAATTAAGG 59.615 37.037 0.00 0.00 32.00 2.69
494 510 7.925483 TGGGTTTTCATGTTGACAGAAATTAAG 59.075 33.333 0.00 0.00 32.00 1.85
495 511 7.708752 GTGGGTTTTCATGTTGACAGAAATTAA 59.291 33.333 0.00 0.00 32.00 1.40
496 512 7.147828 TGTGGGTTTTCATGTTGACAGAAATTA 60.148 33.333 0.00 0.00 32.00 1.40
497 513 6.048509 GTGGGTTTTCATGTTGACAGAAATT 58.951 36.000 0.00 0.00 32.00 1.82
498 514 5.128499 TGTGGGTTTTCATGTTGACAGAAAT 59.872 36.000 0.00 0.00 32.00 2.17
499 515 4.464244 TGTGGGTTTTCATGTTGACAGAAA 59.536 37.500 0.00 0.00 0.00 2.52
500 516 4.019858 TGTGGGTTTTCATGTTGACAGAA 58.980 39.130 0.00 0.00 0.00 3.02
501 517 3.380004 GTGTGGGTTTTCATGTTGACAGA 59.620 43.478 0.00 0.00 0.00 3.41
502 518 3.381272 AGTGTGGGTTTTCATGTTGACAG 59.619 43.478 0.00 0.00 0.00 3.51
503 519 3.360867 AGTGTGGGTTTTCATGTTGACA 58.639 40.909 0.00 0.00 0.00 3.58
504 520 4.097892 AGAAGTGTGGGTTTTCATGTTGAC 59.902 41.667 0.00 0.00 0.00 3.18
505 521 4.277476 AGAAGTGTGGGTTTTCATGTTGA 58.723 39.130 0.00 0.00 0.00 3.18
506 522 4.654091 AGAAGTGTGGGTTTTCATGTTG 57.346 40.909 0.00 0.00 0.00 3.33
507 523 6.068010 TGATAGAAGTGTGGGTTTTCATGTT 58.932 36.000 0.00 0.00 0.00 2.71
508 524 5.630121 TGATAGAAGTGTGGGTTTTCATGT 58.370 37.500 0.00 0.00 0.00 3.21
509 525 6.573664 TTGATAGAAGTGTGGGTTTTCATG 57.426 37.500 0.00 0.00 0.00 3.07
510 526 7.595819 TTTTGATAGAAGTGTGGGTTTTCAT 57.404 32.000 0.00 0.00 0.00 2.57
511 527 7.595819 ATTTTGATAGAAGTGTGGGTTTTCA 57.404 32.000 0.00 0.00 0.00 2.69
512 528 8.141268 TGAATTTTGATAGAAGTGTGGGTTTTC 58.859 33.333 0.00 0.00 0.00 2.29
513 529 8.017418 TGAATTTTGATAGAAGTGTGGGTTTT 57.983 30.769 0.00 0.00 0.00 2.43
514 530 7.595819 TGAATTTTGATAGAAGTGTGGGTTT 57.404 32.000 0.00 0.00 0.00 3.27
515 531 7.595819 TTGAATTTTGATAGAAGTGTGGGTT 57.404 32.000 0.00 0.00 0.00 4.11
516 532 7.595819 TTTGAATTTTGATAGAAGTGTGGGT 57.404 32.000 0.00 0.00 0.00 4.51
517 533 8.306038 TGATTTGAATTTTGATAGAAGTGTGGG 58.694 33.333 0.00 0.00 0.00 4.61
518 534 9.695526 TTGATTTGAATTTTGATAGAAGTGTGG 57.304 29.630 0.00 0.00 0.00 4.17
520 536 9.918630 CCTTGATTTGAATTTTGATAGAAGTGT 57.081 29.630 0.00 0.00 0.00 3.55
526 542 9.362539 CCAGTTCCTTGATTTGAATTTTGATAG 57.637 33.333 0.00 0.00 0.00 2.08
527 543 8.869109 ACCAGTTCCTTGATTTGAATTTTGATA 58.131 29.630 0.00 0.00 0.00 2.15
528 544 7.738847 ACCAGTTCCTTGATTTGAATTTTGAT 58.261 30.769 0.00 0.00 0.00 2.57
529 545 7.123355 ACCAGTTCCTTGATTTGAATTTTGA 57.877 32.000 0.00 0.00 0.00 2.69
530 546 7.712205 AGAACCAGTTCCTTGATTTGAATTTTG 59.288 33.333 6.91 0.00 40.33 2.44
531 547 7.795047 AGAACCAGTTCCTTGATTTGAATTTT 58.205 30.769 6.91 0.00 40.33 1.82
532 548 7.069826 TGAGAACCAGTTCCTTGATTTGAATTT 59.930 33.333 6.91 0.00 40.33 1.82
533 549 6.550854 TGAGAACCAGTTCCTTGATTTGAATT 59.449 34.615 6.91 0.00 40.33 2.17
534 550 6.015940 GTGAGAACCAGTTCCTTGATTTGAAT 60.016 38.462 6.91 0.00 40.33 2.57
535 551 5.299279 GTGAGAACCAGTTCCTTGATTTGAA 59.701 40.000 6.91 0.00 40.33 2.69
536 552 4.821805 GTGAGAACCAGTTCCTTGATTTGA 59.178 41.667 6.91 0.00 40.33 2.69
537 553 4.580167 TGTGAGAACCAGTTCCTTGATTTG 59.420 41.667 6.91 0.00 40.33 2.32
538 554 4.792068 TGTGAGAACCAGTTCCTTGATTT 58.208 39.130 6.91 0.00 40.33 2.17
539 555 4.437682 TGTGAGAACCAGTTCCTTGATT 57.562 40.909 6.91 0.00 40.33 2.57
540 556 4.103153 TCTTGTGAGAACCAGTTCCTTGAT 59.897 41.667 6.91 0.00 40.33 2.57
541 557 3.454447 TCTTGTGAGAACCAGTTCCTTGA 59.546 43.478 6.91 0.00 40.33 3.02
542 558 3.808728 TCTTGTGAGAACCAGTTCCTTG 58.191 45.455 6.91 0.00 40.33 3.61
543 559 3.745797 GCTCTTGTGAGAACCAGTTCCTT 60.746 47.826 6.91 0.00 42.73 3.36
544 560 2.224402 GCTCTTGTGAGAACCAGTTCCT 60.224 50.000 6.91 0.00 42.73 3.36
545 561 2.147150 GCTCTTGTGAGAACCAGTTCC 58.853 52.381 6.91 0.35 42.73 3.62
546 562 2.147150 GGCTCTTGTGAGAACCAGTTC 58.853 52.381 2.19 2.19 42.73 3.01
547 563 1.541233 CGGCTCTTGTGAGAACCAGTT 60.541 52.381 0.00 0.00 42.73 3.16
548 564 0.034059 CGGCTCTTGTGAGAACCAGT 59.966 55.000 0.00 0.00 42.73 4.00
549 565 0.671781 CCGGCTCTTGTGAGAACCAG 60.672 60.000 0.00 0.00 42.73 4.00
550 566 1.371183 CCGGCTCTTGTGAGAACCA 59.629 57.895 0.00 0.00 42.73 3.67
551 567 1.376037 CCCGGCTCTTGTGAGAACC 60.376 63.158 0.00 0.00 42.73 3.62
552 568 0.250338 AACCCGGCTCTTGTGAGAAC 60.250 55.000 0.00 0.00 42.73 3.01
553 569 0.034896 GAACCCGGCTCTTGTGAGAA 59.965 55.000 0.00 0.00 42.73 2.87
554 570 1.671742 GAACCCGGCTCTTGTGAGA 59.328 57.895 0.00 0.00 42.73 3.27
555 571 1.376037 GGAACCCGGCTCTTGTGAG 60.376 63.158 0.00 0.00 42.96 3.51
556 572 1.701031 TTGGAACCCGGCTCTTGTGA 61.701 55.000 0.00 0.00 0.00 3.58
557 573 0.609131 ATTGGAACCCGGCTCTTGTG 60.609 55.000 0.00 0.00 0.00 3.33
558 574 0.609131 CATTGGAACCCGGCTCTTGT 60.609 55.000 0.00 0.00 0.00 3.16
559 575 0.322456 TCATTGGAACCCGGCTCTTG 60.322 55.000 0.00 0.00 0.00 3.02
560 576 0.625849 ATCATTGGAACCCGGCTCTT 59.374 50.000 0.00 0.00 0.00 2.85
561 577 0.625849 AATCATTGGAACCCGGCTCT 59.374 50.000 0.00 0.00 0.00 4.09
562 578 1.474330 AAATCATTGGAACCCGGCTC 58.526 50.000 0.00 0.00 0.00 4.70
563 579 1.824852 GAAAATCATTGGAACCCGGCT 59.175 47.619 0.00 0.00 0.00 5.52
564 580 1.548269 TGAAAATCATTGGAACCCGGC 59.452 47.619 0.00 0.00 0.00 6.13
565 581 2.166254 CCTGAAAATCATTGGAACCCGG 59.834 50.000 0.00 0.00 0.00 5.73
566 582 3.088532 TCCTGAAAATCATTGGAACCCG 58.911 45.455 0.00 0.00 0.00 5.28
567 583 4.344104 TCTCCTGAAAATCATTGGAACCC 58.656 43.478 0.00 0.00 0.00 4.11
568 584 4.400567 CCTCTCCTGAAAATCATTGGAACC 59.599 45.833 0.00 0.00 0.00 3.62
569 585 5.256474 TCCTCTCCTGAAAATCATTGGAAC 58.744 41.667 0.00 0.00 0.00 3.62
570 586 5.251468 TCTCCTCTCCTGAAAATCATTGGAA 59.749 40.000 0.00 0.00 0.00 3.53
571 587 4.784838 TCTCCTCTCCTGAAAATCATTGGA 59.215 41.667 0.00 0.00 0.00 3.53
572 588 5.108187 TCTCCTCTCCTGAAAATCATTGG 57.892 43.478 0.00 0.00 0.00 3.16
573 589 5.124645 CCTCTCCTCTCCTGAAAATCATTG 58.875 45.833 0.00 0.00 0.00 2.82
574 590 4.165758 CCCTCTCCTCTCCTGAAAATCATT 59.834 45.833 0.00 0.00 0.00 2.57
575 591 3.715834 CCCTCTCCTCTCCTGAAAATCAT 59.284 47.826 0.00 0.00 0.00 2.45
576 592 3.110705 CCCTCTCCTCTCCTGAAAATCA 58.889 50.000 0.00 0.00 0.00 2.57
577 593 3.379452 TCCCTCTCCTCTCCTGAAAATC 58.621 50.000 0.00 0.00 0.00 2.17
578 594 3.498614 TCCCTCTCCTCTCCTGAAAAT 57.501 47.619 0.00 0.00 0.00 1.82
579 595 3.110705 CATCCCTCTCCTCTCCTGAAAA 58.889 50.000 0.00 0.00 0.00 2.29
580 596 2.316067 TCATCCCTCTCCTCTCCTGAAA 59.684 50.000 0.00 0.00 0.00 2.69
581 597 1.933051 TCATCCCTCTCCTCTCCTGAA 59.067 52.381 0.00 0.00 0.00 3.02
582 598 1.216678 GTCATCCCTCTCCTCTCCTGA 59.783 57.143 0.00 0.00 0.00 3.86
583 599 1.703411 GTCATCCCTCTCCTCTCCTG 58.297 60.000 0.00 0.00 0.00 3.86
584 600 0.560688 GGTCATCCCTCTCCTCTCCT 59.439 60.000 0.00 0.00 0.00 3.69
585 601 0.263172 TGGTCATCCCTCTCCTCTCC 59.737 60.000 0.00 0.00 0.00 3.71
586 602 1.969923 CATGGTCATCCCTCTCCTCTC 59.030 57.143 0.00 0.00 0.00 3.20
587 603 1.414245 CCATGGTCATCCCTCTCCTCT 60.414 57.143 2.57 0.00 0.00 3.69
588 604 1.055040 CCATGGTCATCCCTCTCCTC 58.945 60.000 2.57 0.00 0.00 3.71
589 605 0.644380 TCCATGGTCATCCCTCTCCT 59.356 55.000 12.58 0.00 0.00 3.69
590 606 1.055040 CTCCATGGTCATCCCTCTCC 58.945 60.000 12.58 0.00 0.00 3.71
591 607 1.055040 CCTCCATGGTCATCCCTCTC 58.945 60.000 12.58 0.00 0.00 3.20
592 608 1.059006 GCCTCCATGGTCATCCCTCT 61.059 60.000 12.58 0.00 38.35 3.69
593 609 1.348008 TGCCTCCATGGTCATCCCTC 61.348 60.000 12.58 0.00 38.35 4.30
594 610 1.308128 TGCCTCCATGGTCATCCCT 60.308 57.895 12.58 0.00 38.35 4.20
595 611 1.150081 CTGCCTCCATGGTCATCCC 59.850 63.158 12.58 0.00 38.35 3.85
596 612 1.150081 CCTGCCTCCATGGTCATCC 59.850 63.158 12.58 0.00 38.35 3.51
597 613 0.548031 TTCCTGCCTCCATGGTCATC 59.452 55.000 12.58 0.46 38.35 2.92
598 614 0.549950 CTTCCTGCCTCCATGGTCAT 59.450 55.000 12.58 0.00 38.35 3.06
599 615 0.842030 ACTTCCTGCCTCCATGGTCA 60.842 55.000 12.58 7.70 38.35 4.02
600 616 0.107459 GACTTCCTGCCTCCATGGTC 60.107 60.000 12.58 3.07 38.35 4.02
601 617 0.548682 AGACTTCCTGCCTCCATGGT 60.549 55.000 12.58 0.00 38.35 3.55
602 618 0.179936 GAGACTTCCTGCCTCCATGG 59.820 60.000 4.97 4.97 39.35 3.66
603 619 0.907486 TGAGACTTCCTGCCTCCATG 59.093 55.000 0.00 0.00 0.00 3.66
604 620 1.767681 GATGAGACTTCCTGCCTCCAT 59.232 52.381 0.00 0.00 0.00 3.41
605 621 1.198713 GATGAGACTTCCTGCCTCCA 58.801 55.000 0.00 0.00 0.00 3.86
606 622 0.103937 CGATGAGACTTCCTGCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
607 623 1.107114 TCGATGAGACTTCCTGCCTC 58.893 55.000 0.00 0.00 0.00 4.70
608 624 1.411977 CATCGATGAGACTTCCTGCCT 59.588 52.381 21.02 0.00 0.00 4.75
609 625 1.539929 CCATCGATGAGACTTCCTGCC 60.540 57.143 26.86 0.00 0.00 4.85
610 626 1.410517 TCCATCGATGAGACTTCCTGC 59.589 52.381 26.86 0.00 0.00 4.85
611 627 2.542618 CGTCCATCGATGAGACTTCCTG 60.543 54.545 28.60 17.40 42.86 3.86
612 628 1.678627 CGTCCATCGATGAGACTTCCT 59.321 52.381 28.60 0.00 42.86 3.36
613 629 1.866063 GCGTCCATCGATGAGACTTCC 60.866 57.143 28.60 19.28 42.86 3.46
614 630 1.202302 TGCGTCCATCGATGAGACTTC 60.202 52.381 28.60 23.10 42.86 3.01
615 631 0.817654 TGCGTCCATCGATGAGACTT 59.182 50.000 28.60 0.00 42.86 3.01
616 632 0.817654 TTGCGTCCATCGATGAGACT 59.182 50.000 28.60 0.00 42.86 3.24
617 633 0.924090 GTTGCGTCCATCGATGAGAC 59.076 55.000 26.86 25.78 42.86 3.36
618 634 0.530288 TGTTGCGTCCATCGATGAGA 59.470 50.000 26.86 18.07 42.86 3.27
619 635 1.358877 TTGTTGCGTCCATCGATGAG 58.641 50.000 26.86 17.16 42.86 2.90
620 636 1.463056 GTTTGTTGCGTCCATCGATGA 59.537 47.619 26.86 10.02 42.86 2.92
621 637 1.464608 AGTTTGTTGCGTCCATCGATG 59.535 47.619 18.76 18.76 42.86 3.84
622 638 1.808411 AGTTTGTTGCGTCCATCGAT 58.192 45.000 0.00 0.00 42.86 3.59
623 639 2.442212 TAGTTTGTTGCGTCCATCGA 57.558 45.000 0.00 0.00 42.86 3.59
624 640 3.124466 TGAATAGTTTGTTGCGTCCATCG 59.876 43.478 0.00 0.00 43.12 3.84
625 641 4.391830 TCTGAATAGTTTGTTGCGTCCATC 59.608 41.667 0.00 0.00 0.00 3.51
626 642 4.323417 TCTGAATAGTTTGTTGCGTCCAT 58.677 39.130 0.00 0.00 0.00 3.41
627 643 3.734463 TCTGAATAGTTTGTTGCGTCCA 58.266 40.909 0.00 0.00 0.00 4.02
628 644 4.492570 CGATCTGAATAGTTTGTTGCGTCC 60.493 45.833 0.00 0.00 0.00 4.79
629 645 4.326278 TCGATCTGAATAGTTTGTTGCGTC 59.674 41.667 0.00 0.00 0.00 5.19
630 646 4.242475 TCGATCTGAATAGTTTGTTGCGT 58.758 39.130 0.00 0.00 0.00 5.24
631 647 4.780324 GCTCGATCTGAATAGTTTGTTGCG 60.780 45.833 0.00 0.00 0.00 4.85
632 648 4.494855 GGCTCGATCTGAATAGTTTGTTGC 60.495 45.833 0.00 0.00 0.00 4.17
633 649 4.631377 TGGCTCGATCTGAATAGTTTGTTG 59.369 41.667 0.00 0.00 0.00 3.33
634 650 4.832248 TGGCTCGATCTGAATAGTTTGTT 58.168 39.130 0.00 0.00 0.00 2.83
635 651 4.471904 TGGCTCGATCTGAATAGTTTGT 57.528 40.909 0.00 0.00 0.00 2.83
636 652 4.319333 GCATGGCTCGATCTGAATAGTTTG 60.319 45.833 0.00 0.00 0.00 2.93
637 653 3.812053 GCATGGCTCGATCTGAATAGTTT 59.188 43.478 0.00 0.00 0.00 2.66
638 654 3.397482 GCATGGCTCGATCTGAATAGTT 58.603 45.455 0.00 0.00 0.00 2.24
639 655 2.289320 GGCATGGCTCGATCTGAATAGT 60.289 50.000 12.86 0.00 0.00 2.12
640 656 2.344950 GGCATGGCTCGATCTGAATAG 58.655 52.381 12.86 0.00 0.00 1.73
641 657 1.002430 GGGCATGGCTCGATCTGAATA 59.998 52.381 19.78 0.00 0.00 1.75
642 658 0.250640 GGGCATGGCTCGATCTGAAT 60.251 55.000 19.78 0.00 0.00 2.57
643 659 1.146930 GGGCATGGCTCGATCTGAA 59.853 57.895 19.78 0.00 0.00 3.02
644 660 2.824546 GGGCATGGCTCGATCTGA 59.175 61.111 19.78 0.00 0.00 3.27
661 677 4.778415 CTCGTCCGACACCCAGCG 62.778 72.222 0.00 0.00 0.00 5.18
662 678 4.436998 CCTCGTCCGACACCCAGC 62.437 72.222 0.00 0.00 0.00 4.85
663 679 2.675423 TCCTCGTCCGACACCCAG 60.675 66.667 0.00 0.00 0.00 4.45
664 680 2.675423 CTCCTCGTCCGACACCCA 60.675 66.667 0.00 0.00 0.00 4.51
665 681 4.131088 GCTCCTCGTCCGACACCC 62.131 72.222 0.00 0.00 0.00 4.61
666 682 2.820767 CTTGCTCCTCGTCCGACACC 62.821 65.000 0.00 0.00 0.00 4.16
667 683 1.444553 CTTGCTCCTCGTCCGACAC 60.445 63.158 0.00 0.00 0.00 3.67
668 684 1.176619 TTCTTGCTCCTCGTCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
669 685 0.456995 CTTCTTGCTCCTCGTCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
670 686 0.608308 TCTTCTTGCTCCTCGTCCGA 60.608 55.000 0.00 0.00 0.00 4.55
671 687 0.179150 CTCTTCTTGCTCCTCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
672 688 0.459411 GCTCTTCTTGCTCCTCGTCC 60.459 60.000 0.00 0.00 0.00 4.79
673 689 0.459411 GGCTCTTCTTGCTCCTCGTC 60.459 60.000 0.00 0.00 0.00 4.20
674 690 1.188219 TGGCTCTTCTTGCTCCTCGT 61.188 55.000 0.00 0.00 0.00 4.18
675 691 0.459934 CTGGCTCTTCTTGCTCCTCG 60.460 60.000 0.00 0.00 0.00 4.63
676 692 0.744057 GCTGGCTCTTCTTGCTCCTC 60.744 60.000 0.00 0.00 0.00 3.71
677 693 1.200092 AGCTGGCTCTTCTTGCTCCT 61.200 55.000 0.00 0.00 0.00 3.69
678 694 0.744057 GAGCTGGCTCTTCTTGCTCC 60.744 60.000 14.51 0.00 42.82 4.70
679 695 2.766239 GAGCTGGCTCTTCTTGCTC 58.234 57.895 14.51 0.00 42.31 4.26
688 704 0.615850 ACAAACCCTAGAGCTGGCTC 59.384 55.000 14.02 14.02 43.03 4.70
689 705 1.834263 CTACAAACCCTAGAGCTGGCT 59.166 52.381 0.00 0.00 0.00 4.75
690 706 1.134371 CCTACAAACCCTAGAGCTGGC 60.134 57.143 0.00 0.00 0.00 4.85
691 707 1.486726 CCCTACAAACCCTAGAGCTGG 59.513 57.143 0.00 0.00 0.00 4.85
692 708 1.486726 CCCCTACAAACCCTAGAGCTG 59.513 57.143 0.00 0.00 0.00 4.24
693 709 1.365028 TCCCCTACAAACCCTAGAGCT 59.635 52.381 0.00 0.00 0.00 4.09
694 710 1.763545 CTCCCCTACAAACCCTAGAGC 59.236 57.143 0.00 0.00 0.00 4.09
695 711 2.399580 CCTCCCCTACAAACCCTAGAG 58.600 57.143 0.00 0.00 0.00 2.43
696 712 1.009183 CCCTCCCCTACAAACCCTAGA 59.991 57.143 0.00 0.00 0.00 2.43
697 713 1.009183 TCCCTCCCCTACAAACCCTAG 59.991 57.143 0.00 0.00 0.00 3.02
698 714 1.009183 CTCCCTCCCCTACAAACCCTA 59.991 57.143 0.00 0.00 0.00 3.53
699 715 0.253207 CTCCCTCCCCTACAAACCCT 60.253 60.000 0.00 0.00 0.00 4.34
700 716 0.549413 ACTCCCTCCCCTACAAACCC 60.549 60.000 0.00 0.00 0.00 4.11
701 717 1.369403 AACTCCCTCCCCTACAAACC 58.631 55.000 0.00 0.00 0.00 3.27
702 718 4.857130 ATTAACTCCCTCCCCTACAAAC 57.143 45.455 0.00 0.00 0.00 2.93
703 719 4.569015 GCAATTAACTCCCTCCCCTACAAA 60.569 45.833 0.00 0.00 0.00 2.83
704 720 3.053917 GCAATTAACTCCCTCCCCTACAA 60.054 47.826 0.00 0.00 0.00 2.41
705 721 2.508300 GCAATTAACTCCCTCCCCTACA 59.492 50.000 0.00 0.00 0.00 2.74
706 722 2.508300 TGCAATTAACTCCCTCCCCTAC 59.492 50.000 0.00 0.00 0.00 3.18
707 723 2.508300 GTGCAATTAACTCCCTCCCCTA 59.492 50.000 0.00 0.00 0.00 3.53
708 724 1.285078 GTGCAATTAACTCCCTCCCCT 59.715 52.381 0.00 0.00 0.00 4.79
709 725 1.005450 TGTGCAATTAACTCCCTCCCC 59.995 52.381 0.00 0.00 0.00 4.81
710 726 2.026262 TCTGTGCAATTAACTCCCTCCC 60.026 50.000 0.00 0.00 0.00 4.30
1384 1401 2.170166 CATGCTAAAAACCTCCTGCCA 58.830 47.619 0.00 0.00 0.00 4.92
1707 1724 9.339492 CTGCAAAAACAATAACAACAACAAAAT 57.661 25.926 0.00 0.00 0.00 1.82
1865 1882 5.105187 TGTCAGATGGTGGATAGTGAAAGAG 60.105 44.000 0.00 0.00 0.00 2.85
2144 2173 9.487790 TCTTTCATTTTGTTCAACTTCAAGTTT 57.512 25.926 0.00 0.00 36.03 2.66
2855 2929 5.982890 ATATTTGTGCTTGGCTTAGTTGT 57.017 34.783 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.