Multiple sequence alignment - TraesCS7B01G105800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G105800 chr7B 100.000 1839 0 0 372 2210 122429941 122428103 0.000000e+00 3397.0
1 TraesCS7B01G105800 chr7B 77.755 971 129 50 663 1594 122280949 122280027 1.170000e-142 516.0
2 TraesCS7B01G105800 chr7B 100.000 103 0 0 1 103 122430312 122430210 8.050000e-45 191.0
3 TraesCS7B01G105800 chr7D 92.866 1556 81 12 664 2210 160668488 160666954 0.000000e+00 2231.0
4 TraesCS7B01G105800 chr7D 92.674 1556 81 16 664 2210 160709153 160707622 0.000000e+00 2211.0
5 TraesCS7B01G105800 chr7D 94.100 339 19 1 664 1002 160711088 160710751 4.210000e-142 514.0
6 TraesCS7B01G105800 chr7D 82.341 487 55 13 655 1137 160654719 160654260 5.720000e-106 394.0
7 TraesCS7B01G105800 chr7D 86.415 265 29 6 372 632 84182533 84182272 1.290000e-72 283.0
8 TraesCS7B01G105800 chrUn 92.699 1534 79 16 664 2188 323467305 323468814 0.000000e+00 2182.0
9 TraesCS7B01G105800 chrUn 94.100 339 19 1 664 1002 301829841 301830178 4.210000e-142 514.0
10 TraesCS7B01G105800 chr7A 90.331 1148 65 18 664 1799 161996432 161995319 0.000000e+00 1463.0
11 TraesCS7B01G105800 chr7A 95.098 408 19 1 1804 2210 161995225 161994818 1.850000e-180 641.0
12 TraesCS7B01G105800 chr7A 84.664 476 50 11 663 1137 161992279 161991826 9.300000e-124 453.0
13 TraesCS7B01G105800 chr2B 88.889 261 25 4 373 632 530249835 530249578 3.540000e-83 318.0
14 TraesCS7B01G105800 chr2B 89.320 103 11 0 1 103 640045892 640045994 1.780000e-26 130.0
15 TraesCS7B01G105800 chr3B 84.848 264 29 7 372 632 603610503 603610248 2.820000e-64 255.0
16 TraesCS7B01G105800 chr3B 92.135 178 13 1 456 633 728621397 728621221 1.310000e-62 250.0
17 TraesCS7B01G105800 chr2D 92.179 179 11 3 455 632 645769184 645769008 1.310000e-62 250.0
18 TraesCS7B01G105800 chr2D 91.262 103 9 0 1 103 645769416 645769314 8.230000e-30 141.0
19 TraesCS7B01G105800 chr2D 95.455 66 2 1 2093 2157 82567184 82567249 1.080000e-18 104.0
20 TraesCS7B01G105800 chr5B 88.350 103 12 0 1 103 57445053 57444951 8.290000e-25 124.0
21 TraesCS7B01G105800 chr5D 92.647 68 5 0 1 68 362603168 362603235 5.020000e-17 99.0
22 TraesCS7B01G105800 chr1D 85.507 69 8 2 1 68 361785882 361785815 1.090000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G105800 chr7B 122428103 122430312 2209 True 1794.000000 3397 100.000 1 2210 2 chr7B.!!$R2 2209
1 TraesCS7B01G105800 chr7B 122280027 122280949 922 True 516.000000 516 77.755 663 1594 1 chr7B.!!$R1 931
2 TraesCS7B01G105800 chr7D 160666954 160668488 1534 True 2231.000000 2231 92.866 664 2210 1 chr7D.!!$R3 1546
3 TraesCS7B01G105800 chr7D 160707622 160711088 3466 True 1362.500000 2211 93.387 664 2210 2 chr7D.!!$R4 1546
4 TraesCS7B01G105800 chrUn 323467305 323468814 1509 False 2182.000000 2182 92.699 664 2188 1 chrUn.!!$F2 1524
5 TraesCS7B01G105800 chr7A 161991826 161996432 4606 True 852.333333 1463 90.031 663 2210 3 chr7A.!!$R1 1547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 404 0.237498 GCCCACTTGTTTGTCTACGC 59.763 55.0 0.0 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 3690 0.599728 GAAGGCTAGAGCTGCGGATG 60.6 60.0 0.0 0.0 41.7 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.435186 GCCTCCTGCGCACCTTTC 61.435 66.667 5.66 0.00 0.00 2.62
38 39 2.032528 CCTCCTGCGCACCTTTCA 59.967 61.111 5.66 0.00 0.00 2.69
39 40 1.600636 CCTCCTGCGCACCTTTCAA 60.601 57.895 5.66 0.00 0.00 2.69
40 41 1.576421 CTCCTGCGCACCTTTCAAC 59.424 57.895 5.66 0.00 0.00 3.18
41 42 1.153066 TCCTGCGCACCTTTCAACA 60.153 52.632 5.66 0.00 0.00 3.33
42 43 1.165907 TCCTGCGCACCTTTCAACAG 61.166 55.000 5.66 0.00 0.00 3.16
43 44 1.370900 CTGCGCACCTTTCAACAGC 60.371 57.895 5.66 0.00 0.00 4.40
45 46 2.427410 CGCACCTTTCAACAGCGC 60.427 61.111 0.00 0.00 41.95 5.92
46 47 2.050077 GCACCTTTCAACAGCGCC 60.050 61.111 2.29 0.00 0.00 6.53
47 48 2.252260 CACCTTTCAACAGCGCCG 59.748 61.111 2.29 0.00 0.00 6.46
48 49 2.110213 ACCTTTCAACAGCGCCGA 59.890 55.556 2.29 0.00 0.00 5.54
49 50 2.251642 ACCTTTCAACAGCGCCGAC 61.252 57.895 2.29 0.00 0.00 4.79
50 51 2.170985 CTTTCAACAGCGCCGACG 59.829 61.111 2.29 0.00 44.07 5.12
51 52 3.295228 CTTTCAACAGCGCCGACGG 62.295 63.158 10.29 10.29 40.57 4.79
61 62 4.933064 GCCGACGGCGAGATCCAG 62.933 72.222 25.24 0.00 39.62 3.86
62 63 4.933064 CCGACGGCGAGATCCAGC 62.933 72.222 15.16 1.72 40.82 4.85
64 65 4.933064 GACGGCGAGATCCAGCGG 62.933 72.222 16.62 13.49 39.21 5.52
68 69 4.873129 GCGAGATCCAGCGGCGAA 62.873 66.667 12.98 0.00 0.00 4.70
69 70 2.028190 CGAGATCCAGCGGCGAAT 59.972 61.111 12.98 0.00 0.00 3.34
70 71 2.018866 CGAGATCCAGCGGCGAATC 61.019 63.158 12.98 7.49 0.00 2.52
71 72 1.365633 GAGATCCAGCGGCGAATCT 59.634 57.895 12.98 12.49 0.00 2.40
72 73 0.943359 GAGATCCAGCGGCGAATCTG 60.943 60.000 12.98 8.73 0.00 2.90
76 77 3.126879 CAGCGGCGAATCTGGCAA 61.127 61.111 12.98 0.00 0.00 4.52
77 78 3.127533 AGCGGCGAATCTGGCAAC 61.128 61.111 12.98 0.00 0.00 4.17
90 91 2.813100 GGCAACAACCAGCAAATCG 58.187 52.632 0.00 0.00 0.00 3.34
91 92 1.284297 GGCAACAACCAGCAAATCGC 61.284 55.000 0.00 0.00 42.91 4.58
100 101 3.102097 GCAAATCGCGAGGGGAAG 58.898 61.111 16.66 2.11 0.00 3.46
101 102 2.472909 GCAAATCGCGAGGGGAAGG 61.473 63.158 16.66 0.54 0.00 3.46
102 103 1.819632 CAAATCGCGAGGGGAAGGG 60.820 63.158 16.66 0.00 0.00 3.95
388 389 2.203480 GAAACTGCCCACTGCCCA 60.203 61.111 0.00 0.00 40.16 5.36
389 390 2.521708 AAACTGCCCACTGCCCAC 60.522 61.111 0.00 0.00 40.16 4.61
390 391 2.983725 GAAACTGCCCACTGCCCACT 62.984 60.000 0.00 0.00 40.16 4.00
391 392 2.588029 AAACTGCCCACTGCCCACTT 62.588 55.000 0.00 0.00 40.16 3.16
392 393 2.987547 CTGCCCACTGCCCACTTG 60.988 66.667 0.00 0.00 40.16 3.16
393 394 3.797507 CTGCCCACTGCCCACTTGT 62.798 63.158 0.00 0.00 40.16 3.16
394 395 2.521708 GCCCACTGCCCACTTGTT 60.522 61.111 0.00 0.00 0.00 2.83
395 396 2.133641 GCCCACTGCCCACTTGTTT 61.134 57.895 0.00 0.00 0.00 2.83
396 397 1.741525 CCCACTGCCCACTTGTTTG 59.258 57.895 0.00 0.00 0.00 2.93
397 398 1.042559 CCCACTGCCCACTTGTTTGT 61.043 55.000 0.00 0.00 0.00 2.83
398 399 0.385390 CCACTGCCCACTTGTTTGTC 59.615 55.000 0.00 0.00 0.00 3.18
399 400 1.392589 CACTGCCCACTTGTTTGTCT 58.607 50.000 0.00 0.00 0.00 3.41
400 401 2.571212 CACTGCCCACTTGTTTGTCTA 58.429 47.619 0.00 0.00 0.00 2.59
401 402 2.290641 CACTGCCCACTTGTTTGTCTAC 59.709 50.000 0.00 0.00 0.00 2.59
402 403 1.531149 CTGCCCACTTGTTTGTCTACG 59.469 52.381 0.00 0.00 0.00 3.51
403 404 0.237498 GCCCACTTGTTTGTCTACGC 59.763 55.000 0.00 0.00 0.00 4.42
404 405 1.878953 CCCACTTGTTTGTCTACGCT 58.121 50.000 0.00 0.00 0.00 5.07
405 406 1.798813 CCCACTTGTTTGTCTACGCTC 59.201 52.381 0.00 0.00 0.00 5.03
406 407 2.479837 CCACTTGTTTGTCTACGCTCA 58.520 47.619 0.00 0.00 0.00 4.26
407 408 2.221055 CCACTTGTTTGTCTACGCTCAC 59.779 50.000 0.00 0.00 0.00 3.51
408 409 3.123804 CACTTGTTTGTCTACGCTCACT 58.876 45.455 0.00 0.00 0.00 3.41
409 410 4.295870 CACTTGTTTGTCTACGCTCACTA 58.704 43.478 0.00 0.00 0.00 2.74
410 411 4.743151 CACTTGTTTGTCTACGCTCACTAA 59.257 41.667 0.00 0.00 0.00 2.24
411 412 4.743644 ACTTGTTTGTCTACGCTCACTAAC 59.256 41.667 0.00 0.00 0.00 2.34
412 413 4.310357 TGTTTGTCTACGCTCACTAACA 57.690 40.909 4.80 4.80 36.37 2.41
413 414 4.878439 TGTTTGTCTACGCTCACTAACAT 58.122 39.130 4.80 0.00 34.64 2.71
414 415 6.016213 TGTTTGTCTACGCTCACTAACATA 57.984 37.500 4.80 0.00 34.64 2.29
415 416 6.627243 TGTTTGTCTACGCTCACTAACATAT 58.373 36.000 4.80 0.00 34.64 1.78
416 417 6.530181 TGTTTGTCTACGCTCACTAACATATG 59.470 38.462 0.00 0.00 34.64 1.78
417 418 5.830000 TGTCTACGCTCACTAACATATGT 57.170 39.130 1.41 1.41 0.00 2.29
418 419 5.578776 TGTCTACGCTCACTAACATATGTG 58.421 41.667 9.63 0.00 35.68 3.21
419 420 4.441415 GTCTACGCTCACTAACATATGTGC 59.559 45.833 9.63 6.33 34.49 4.57
420 421 2.550978 ACGCTCACTAACATATGTGCC 58.449 47.619 9.63 0.00 32.92 5.01
421 422 1.867233 CGCTCACTAACATATGTGCCC 59.133 52.381 9.63 0.00 32.92 5.36
422 423 2.741553 CGCTCACTAACATATGTGCCCA 60.742 50.000 9.63 0.00 32.92 5.36
423 424 2.614057 GCTCACTAACATATGTGCCCAC 59.386 50.000 9.63 0.00 34.49 4.61
424 425 2.866156 CTCACTAACATATGTGCCCACG 59.134 50.000 9.63 0.00 34.49 4.94
425 426 1.330521 CACTAACATATGTGCCCACGC 59.669 52.381 9.63 0.00 0.00 5.34
426 427 1.065782 ACTAACATATGTGCCCACGCA 60.066 47.619 9.63 0.00 44.78 5.24
434 435 3.143338 TGCCCACGCAGTCACTAA 58.857 55.556 0.00 0.00 41.61 2.24
435 436 1.301401 TGCCCACGCAGTCACTAAC 60.301 57.895 0.00 0.00 41.61 2.34
436 437 1.301401 GCCCACGCAGTCACTAACA 60.301 57.895 0.00 0.00 41.61 2.41
437 438 0.673644 GCCCACGCAGTCACTAACAT 60.674 55.000 0.00 0.00 41.61 2.71
438 439 1.078709 CCCACGCAGTCACTAACATG 58.921 55.000 0.00 0.00 41.61 3.21
439 440 1.078709 CCACGCAGTCACTAACATGG 58.921 55.000 0.00 0.00 41.61 3.66
440 441 0.443869 CACGCAGTCACTAACATGGC 59.556 55.000 0.00 0.00 41.61 4.40
441 442 1.014044 ACGCAGTCACTAACATGGCG 61.014 55.000 3.58 3.58 45.03 5.69
442 443 1.695893 CGCAGTCACTAACATGGCGG 61.696 60.000 0.00 0.00 39.76 6.13
443 444 1.369091 GCAGTCACTAACATGGCGGG 61.369 60.000 0.00 0.00 0.00 6.13
444 445 1.078426 AGTCACTAACATGGCGGGC 60.078 57.895 0.00 0.00 0.00 6.13
445 446 2.112815 GTCACTAACATGGCGGGCC 61.113 63.158 1.86 1.86 0.00 5.80
446 447 2.828549 CACTAACATGGCGGGCCC 60.829 66.667 13.57 13.57 34.56 5.80
485 486 4.812476 CGCCTCGGCACAATCGGA 62.812 66.667 8.87 0.00 42.06 4.55
486 487 3.195698 GCCTCGGCACAATCGGAC 61.196 66.667 2.41 0.00 41.49 4.79
487 488 2.511600 CCTCGGCACAATCGGACC 60.512 66.667 0.00 0.00 0.00 4.46
488 489 2.264480 CTCGGCACAATCGGACCA 59.736 61.111 0.00 0.00 0.00 4.02
489 490 1.811266 CTCGGCACAATCGGACCAG 60.811 63.158 0.00 0.00 0.00 4.00
490 491 2.819595 CGGCACAATCGGACCAGG 60.820 66.667 0.00 0.00 0.00 4.45
491 492 3.134127 GGCACAATCGGACCAGGC 61.134 66.667 0.00 0.00 0.00 4.85
492 493 3.499737 GCACAATCGGACCAGGCG 61.500 66.667 0.00 0.00 0.00 5.52
493 494 2.047274 CACAATCGGACCAGGCGT 60.047 61.111 0.00 0.00 0.00 5.68
494 495 2.047274 ACAATCGGACCAGGCGTG 60.047 61.111 0.00 0.00 0.00 5.34
495 496 3.499737 CAATCGGACCAGGCGTGC 61.500 66.667 0.00 0.00 0.00 5.34
514 515 4.742201 GGAGAAGCAGCGCGTCCA 62.742 66.667 8.43 0.00 37.75 4.02
515 516 2.738521 GAGAAGCAGCGCGTCCAA 60.739 61.111 8.43 0.00 37.75 3.53
516 517 2.280797 AGAAGCAGCGCGTCCAAA 60.281 55.556 8.43 0.00 37.75 3.28
517 518 1.841663 GAGAAGCAGCGCGTCCAAAA 61.842 55.000 8.43 0.00 37.75 2.44
518 519 1.725973 GAAGCAGCGCGTCCAAAAC 60.726 57.895 8.43 0.00 31.28 2.43
519 520 3.194272 AAGCAGCGCGTCCAAAACC 62.194 57.895 8.43 0.00 0.00 3.27
521 522 3.342627 CAGCGCGTCCAAAACCGA 61.343 61.111 8.43 0.00 0.00 4.69
522 523 3.343421 AGCGCGTCCAAAACCGAC 61.343 61.111 8.43 0.00 0.00 4.79
523 524 3.641986 GCGCGTCCAAAACCGACA 61.642 61.111 8.43 0.00 0.00 4.35
524 525 3.015677 CGCGTCCAAAACCGACAA 58.984 55.556 0.00 0.00 0.00 3.18
525 526 1.083015 CGCGTCCAAAACCGACAAG 60.083 57.895 0.00 0.00 0.00 3.16
526 527 1.492319 CGCGTCCAAAACCGACAAGA 61.492 55.000 0.00 0.00 0.00 3.02
527 528 0.658897 GCGTCCAAAACCGACAAGAA 59.341 50.000 0.00 0.00 0.00 2.52
528 529 1.064357 GCGTCCAAAACCGACAAGAAA 59.936 47.619 0.00 0.00 0.00 2.52
529 530 2.478200 GCGTCCAAAACCGACAAGAAAA 60.478 45.455 0.00 0.00 0.00 2.29
530 531 3.103007 CGTCCAAAACCGACAAGAAAAC 58.897 45.455 0.00 0.00 0.00 2.43
531 532 3.426426 CGTCCAAAACCGACAAGAAAACA 60.426 43.478 0.00 0.00 0.00 2.83
532 533 3.855379 GTCCAAAACCGACAAGAAAACAC 59.145 43.478 0.00 0.00 0.00 3.32
533 534 3.119424 TCCAAAACCGACAAGAAAACACC 60.119 43.478 0.00 0.00 0.00 4.16
534 535 3.119280 CCAAAACCGACAAGAAAACACCT 60.119 43.478 0.00 0.00 0.00 4.00
535 536 3.775661 AAACCGACAAGAAAACACCTG 57.224 42.857 0.00 0.00 0.00 4.00
536 537 1.675552 ACCGACAAGAAAACACCTGG 58.324 50.000 0.00 0.00 0.00 4.45
537 538 1.210967 ACCGACAAGAAAACACCTGGA 59.789 47.619 0.00 0.00 0.00 3.86
538 539 1.602377 CCGACAAGAAAACACCTGGAC 59.398 52.381 0.00 0.00 0.00 4.02
539 540 1.602377 CGACAAGAAAACACCTGGACC 59.398 52.381 0.00 0.00 0.00 4.46
540 541 1.602377 GACAAGAAAACACCTGGACCG 59.398 52.381 0.00 0.00 0.00 4.79
541 542 0.310854 CAAGAAAACACCTGGACCGC 59.689 55.000 0.00 0.00 0.00 5.68
542 543 1.164041 AAGAAAACACCTGGACCGCG 61.164 55.000 0.00 0.00 0.00 6.46
543 544 3.249973 GAAAACACCTGGACCGCGC 62.250 63.158 0.00 0.00 0.00 6.86
567 568 3.272334 GCACGATCCCACGCCATC 61.272 66.667 0.00 0.00 36.70 3.51
568 569 2.961721 CACGATCCCACGCCATCG 60.962 66.667 0.00 0.00 46.03 3.84
569 570 4.891727 ACGATCCCACGCCATCGC 62.892 66.667 1.34 0.00 44.74 4.58
570 571 4.889856 CGATCCCACGCCATCGCA 62.890 66.667 0.00 0.00 39.84 5.10
571 572 3.272334 GATCCCACGCCATCGCAC 61.272 66.667 0.00 0.00 39.84 5.34
605 606 3.540014 CTCAAGCAGCGCGTCGAG 61.540 66.667 8.43 1.08 0.00 4.04
623 624 3.901225 GCGCACGCGTACTAATATG 57.099 52.632 13.44 0.00 42.09 1.78
624 625 1.126079 GCGCACGCGTACTAATATGT 58.874 50.000 13.44 0.00 42.09 2.29
625 626 2.309693 GCGCACGCGTACTAATATGTA 58.690 47.619 13.44 0.00 42.09 2.29
626 627 2.912967 GCGCACGCGTACTAATATGTAT 59.087 45.455 13.44 0.00 42.09 2.29
627 628 3.362831 GCGCACGCGTACTAATATGTATT 59.637 43.478 13.44 0.00 42.09 1.89
628 629 4.143473 GCGCACGCGTACTAATATGTATTT 60.143 41.667 13.44 0.00 42.09 1.40
629 630 5.059587 GCGCACGCGTACTAATATGTATTTA 59.940 40.000 13.44 0.00 42.09 1.40
630 631 6.670800 CGCACGCGTACTAATATGTATTTAG 58.329 40.000 13.44 0.00 34.35 1.85
631 632 6.237123 CGCACGCGTACTAATATGTATTTAGG 60.237 42.308 13.44 0.00 34.35 2.69
632 633 6.583806 GCACGCGTACTAATATGTATTTAGGT 59.416 38.462 13.44 0.00 0.00 3.08
633 634 7.115378 GCACGCGTACTAATATGTATTTAGGTT 59.885 37.037 13.44 0.00 0.00 3.50
634 635 8.971321 CACGCGTACTAATATGTATTTAGGTTT 58.029 33.333 13.44 0.00 0.00 3.27
635 636 9.533253 ACGCGTACTAATATGTATTTAGGTTTT 57.467 29.630 11.67 0.00 0.00 2.43
682 683 1.419922 CAGTGCAACATCCGCGTAC 59.580 57.895 4.92 0.00 41.43 3.67
687 688 2.048970 AACATCCGCGTACGTGCA 60.049 55.556 23.00 9.50 37.70 4.57
712 2648 3.965694 AGGCATGCAGAAAGAATTCTCT 58.034 40.909 21.36 0.00 44.11 3.10
723 2659 1.065564 AGAATTCTCTGCCCACTGCTC 60.066 52.381 0.88 0.00 42.00 4.26
779 2715 2.475200 AAGTACGTACGCGGTATTCC 57.525 50.000 19.49 0.00 43.45 3.01
785 2721 1.333881 CGTACGCGGTATTCCAGAGAG 60.334 57.143 12.47 0.00 0.00 3.20
791 2727 2.483714 GCGGTATTCCAGAGAGATGCAA 60.484 50.000 0.00 0.00 0.00 4.08
985 2921 1.202758 AGTTTGTTGCCTCGGTGATCA 60.203 47.619 0.00 0.00 0.00 2.92
1173 3112 3.611674 TGCTCGACGAACAGCCCA 61.612 61.111 0.00 0.00 34.47 5.36
1352 3327 1.525175 TTCCCCCAAGTGTAAGGTGT 58.475 50.000 0.00 0.00 0.00 4.16
1375 3353 9.271828 GTGTGGATTTTTCCATTTCAGTTTATT 57.728 29.630 0.00 0.00 42.41 1.40
1421 3399 5.131594 AGTTACTGACGGGTTTTCTACTC 57.868 43.478 0.00 0.00 0.00 2.59
1594 3580 5.161135 AGATGATCAGAAGGGTGGATGTAT 58.839 41.667 0.09 0.00 0.00 2.29
1595 3581 5.610132 AGATGATCAGAAGGGTGGATGTATT 59.390 40.000 0.09 0.00 0.00 1.89
1596 3582 5.039920 TGATCAGAAGGGTGGATGTATTG 57.960 43.478 0.00 0.00 0.00 1.90
1597 3583 4.474651 TGATCAGAAGGGTGGATGTATTGT 59.525 41.667 0.00 0.00 0.00 2.71
1598 3584 5.665360 TGATCAGAAGGGTGGATGTATTGTA 59.335 40.000 0.00 0.00 0.00 2.41
1618 3604 5.454966 TGTACCCTCAGCTTCTATATGTCA 58.545 41.667 0.00 0.00 0.00 3.58
1649 3635 2.830321 GGATTATACCCTCCGTGGTAGG 59.170 54.545 0.00 0.00 43.86 3.18
1699 3690 7.116376 TGTTACTCGACTTCATCAATCTTGAAC 59.884 37.037 0.00 0.00 41.13 3.18
1718 3709 0.599728 CATCCGCAGCTCTAGCCTTC 60.600 60.000 0.00 0.00 43.38 3.46
1734 3725 2.159037 GCCTTCGGTAAACACTGCTAAC 59.841 50.000 0.00 0.00 0.00 2.34
1808 3888 1.551883 TGCATGCAGCTCTCTAGTTCA 59.448 47.619 18.46 0.00 45.94 3.18
2019 4099 6.998074 TGCTGAGATAAGTTTCAAAAAGGAGA 59.002 34.615 0.00 0.00 0.00 3.71
2166 4247 1.070445 GAGGGCATGATCAGTCCGG 59.930 63.158 0.09 0.00 0.00 5.14
2168 4249 2.443394 GGGCATGATCAGTCCGGGA 61.443 63.158 0.00 0.00 0.00 5.14
2182 4263 2.595754 GGGATGCGGCAGGGAATC 60.596 66.667 9.25 0.00 0.00 2.52
2199 4280 4.120589 GGAATCAACCTCGACCTAATCAC 58.879 47.826 0.00 0.00 0.00 3.06
2200 4281 4.382685 GGAATCAACCTCGACCTAATCACA 60.383 45.833 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.435186 GAAAGGTGCGCAGGAGGC 61.435 66.667 12.22 0.00 39.90 4.70
21 22 1.600636 TTGAAAGGTGCGCAGGAGG 60.601 57.895 12.22 0.00 0.00 4.30
22 23 1.165907 TGTTGAAAGGTGCGCAGGAG 61.166 55.000 12.22 0.00 0.00 3.69
23 24 1.153066 TGTTGAAAGGTGCGCAGGA 60.153 52.632 12.22 0.00 0.00 3.86
24 25 1.283793 CTGTTGAAAGGTGCGCAGG 59.716 57.895 12.22 0.00 0.00 4.85
25 26 1.370900 GCTGTTGAAAGGTGCGCAG 60.371 57.895 12.22 0.00 0.00 5.18
26 27 2.721231 GCTGTTGAAAGGTGCGCA 59.279 55.556 5.66 5.66 0.00 6.09
27 28 2.427410 CGCTGTTGAAAGGTGCGC 60.427 61.111 0.00 0.00 40.15 6.09
29 30 2.050077 GGCGCTGTTGAAAGGTGC 60.050 61.111 7.64 0.00 35.98 5.01
30 31 2.250939 TCGGCGCTGTTGAAAGGTG 61.251 57.895 17.37 0.00 0.00 4.00
31 32 2.110213 TCGGCGCTGTTGAAAGGT 59.890 55.556 17.37 0.00 0.00 3.50
32 33 2.556287 GTCGGCGCTGTTGAAAGG 59.444 61.111 17.37 0.00 0.00 3.11
33 34 2.170985 CGTCGGCGCTGTTGAAAG 59.829 61.111 17.37 0.00 0.00 2.62
34 35 3.342627 CCGTCGGCGCTGTTGAAA 61.343 61.111 17.37 0.00 36.67 2.69
44 45 4.933064 CTGGATCTCGCCGTCGGC 62.933 72.222 26.69 26.69 46.75 5.54
45 46 4.933064 GCTGGATCTCGCCGTCGG 62.933 72.222 6.99 6.99 36.13 4.79
47 48 4.933064 CCGCTGGATCTCGCCGTC 62.933 72.222 0.00 0.00 0.00 4.79
51 52 4.873129 TTCGCCGCTGGATCTCGC 62.873 66.667 0.00 0.00 0.00 5.03
52 53 2.018866 GATTCGCCGCTGGATCTCG 61.019 63.158 0.00 0.00 0.00 4.04
53 54 0.943359 CAGATTCGCCGCTGGATCTC 60.943 60.000 3.80 0.00 0.00 2.75
54 55 1.068753 CAGATTCGCCGCTGGATCT 59.931 57.895 0.00 1.51 0.00 2.75
55 56 3.635204 CAGATTCGCCGCTGGATC 58.365 61.111 0.00 0.00 0.00 3.36
59 60 3.126879 TTGCCAGATTCGCCGCTG 61.127 61.111 0.00 0.00 0.00 5.18
60 61 3.127533 GTTGCCAGATTCGCCGCT 61.128 61.111 0.00 0.00 0.00 5.52
61 62 2.976840 TTGTTGCCAGATTCGCCGC 61.977 57.895 0.00 0.00 0.00 6.53
62 63 1.154225 GTTGTTGCCAGATTCGCCG 60.154 57.895 0.00 0.00 0.00 6.46
63 64 1.212751 GGTTGTTGCCAGATTCGCC 59.787 57.895 0.00 0.00 0.00 5.54
64 65 1.956043 TGGTTGTTGCCAGATTCGC 59.044 52.632 0.00 0.00 33.97 4.70
71 72 0.031857 CGATTTGCTGGTTGTTGCCA 59.968 50.000 0.00 0.00 36.97 4.92
72 73 1.284297 GCGATTTGCTGGTTGTTGCC 61.284 55.000 0.00 0.00 41.73 4.52
73 74 1.608093 CGCGATTTGCTGGTTGTTGC 61.608 55.000 0.00 0.00 43.27 4.17
74 75 0.040514 TCGCGATTTGCTGGTTGTTG 60.041 50.000 3.71 0.00 43.27 3.33
75 76 0.238289 CTCGCGATTTGCTGGTTGTT 59.762 50.000 10.36 0.00 43.27 2.83
76 77 1.577328 CCTCGCGATTTGCTGGTTGT 61.577 55.000 10.36 0.00 43.27 3.32
77 78 1.135315 CCTCGCGATTTGCTGGTTG 59.865 57.895 10.36 0.00 43.27 3.77
78 79 2.040544 CCCTCGCGATTTGCTGGTT 61.041 57.895 10.36 0.00 43.27 3.67
79 80 2.436646 CCCTCGCGATTTGCTGGT 60.437 61.111 10.36 0.00 43.27 4.00
80 81 3.204827 CCCCTCGCGATTTGCTGG 61.205 66.667 10.36 5.97 43.27 4.85
81 82 1.709147 CTTCCCCTCGCGATTTGCTG 61.709 60.000 10.36 0.00 43.27 4.41
82 83 1.450312 CTTCCCCTCGCGATTTGCT 60.450 57.895 10.36 0.00 43.27 3.91
83 84 2.472909 CCTTCCCCTCGCGATTTGC 61.473 63.158 10.36 0.00 41.47 3.68
84 85 1.819632 CCCTTCCCCTCGCGATTTG 60.820 63.158 10.36 0.68 0.00 2.32
85 86 2.590092 CCCTTCCCCTCGCGATTT 59.410 61.111 10.36 0.00 0.00 2.17
377 378 2.133641 AAACAAGTGGGCAGTGGGC 61.134 57.895 0.00 0.00 43.74 5.36
378 379 1.042559 ACAAACAAGTGGGCAGTGGG 61.043 55.000 0.00 0.00 0.00 4.61
379 380 0.385390 GACAAACAAGTGGGCAGTGG 59.615 55.000 0.00 0.00 0.00 4.00
380 381 1.392589 AGACAAACAAGTGGGCAGTG 58.607 50.000 0.00 0.00 0.00 3.66
381 382 2.572290 GTAGACAAACAAGTGGGCAGT 58.428 47.619 0.00 0.00 0.00 4.40
382 383 1.531149 CGTAGACAAACAAGTGGGCAG 59.469 52.381 0.00 0.00 0.00 4.85
383 384 1.588674 CGTAGACAAACAAGTGGGCA 58.411 50.000 0.00 0.00 0.00 5.36
384 385 0.237498 GCGTAGACAAACAAGTGGGC 59.763 55.000 0.00 0.00 0.00 5.36
385 386 1.798813 GAGCGTAGACAAACAAGTGGG 59.201 52.381 0.00 0.00 0.00 4.61
386 387 2.221055 GTGAGCGTAGACAAACAAGTGG 59.779 50.000 0.00 0.00 0.00 4.00
387 388 3.123804 AGTGAGCGTAGACAAACAAGTG 58.876 45.455 0.00 0.00 0.00 3.16
388 389 3.454371 AGTGAGCGTAGACAAACAAGT 57.546 42.857 0.00 0.00 0.00 3.16
389 390 4.743151 TGTTAGTGAGCGTAGACAAACAAG 59.257 41.667 0.00 0.00 0.00 3.16
390 391 4.684877 TGTTAGTGAGCGTAGACAAACAA 58.315 39.130 0.00 0.00 0.00 2.83
391 392 4.310357 TGTTAGTGAGCGTAGACAAACA 57.690 40.909 0.00 0.00 0.00 2.83
392 393 6.530534 ACATATGTTAGTGAGCGTAGACAAAC 59.469 38.462 1.41 0.00 0.00 2.93
393 394 6.530181 CACATATGTTAGTGAGCGTAGACAAA 59.470 38.462 5.37 0.00 37.97 2.83
394 395 6.033966 CACATATGTTAGTGAGCGTAGACAA 58.966 40.000 5.37 0.00 37.97 3.18
395 396 5.578776 CACATATGTTAGTGAGCGTAGACA 58.421 41.667 5.37 0.00 37.97 3.41
396 397 4.441415 GCACATATGTTAGTGAGCGTAGAC 59.559 45.833 5.37 0.00 37.97 2.59
397 398 4.499188 GGCACATATGTTAGTGAGCGTAGA 60.499 45.833 5.37 0.00 37.97 2.59
398 399 3.736252 GGCACATATGTTAGTGAGCGTAG 59.264 47.826 5.37 0.00 37.97 3.51
399 400 3.491964 GGGCACATATGTTAGTGAGCGTA 60.492 47.826 5.37 0.00 37.97 4.42
400 401 2.550978 GGCACATATGTTAGTGAGCGT 58.449 47.619 5.37 0.00 37.97 5.07
401 402 1.867233 GGGCACATATGTTAGTGAGCG 59.133 52.381 5.37 0.00 37.97 5.03
402 403 2.614057 GTGGGCACATATGTTAGTGAGC 59.386 50.000 5.37 5.32 37.97 4.26
403 404 2.866156 CGTGGGCACATATGTTAGTGAG 59.134 50.000 5.37 0.00 37.97 3.51
404 405 2.899976 CGTGGGCACATATGTTAGTGA 58.100 47.619 5.37 0.00 37.97 3.41
405 406 1.330521 GCGTGGGCACATATGTTAGTG 59.669 52.381 5.37 0.00 39.62 2.74
406 407 1.065782 TGCGTGGGCACATATGTTAGT 60.066 47.619 5.37 0.00 46.21 2.24
407 408 1.599071 CTGCGTGGGCACATATGTTAG 59.401 52.381 5.37 0.00 46.21 2.34
408 409 1.065782 ACTGCGTGGGCACATATGTTA 60.066 47.619 5.37 0.00 46.21 2.41
409 410 0.322456 ACTGCGTGGGCACATATGTT 60.322 50.000 5.37 0.00 46.21 2.71
410 411 0.744414 GACTGCGTGGGCACATATGT 60.744 55.000 1.41 1.41 46.21 2.29
411 412 0.744057 TGACTGCGTGGGCACATATG 60.744 55.000 0.00 0.00 46.21 1.78
412 413 0.744414 GTGACTGCGTGGGCACATAT 60.744 55.000 10.12 0.00 46.21 1.78
413 414 1.375396 GTGACTGCGTGGGCACATA 60.375 57.895 10.12 0.00 46.21 2.29
414 415 1.826340 TAGTGACTGCGTGGGCACAT 61.826 55.000 15.78 5.98 46.21 3.21
415 416 2.034048 TTAGTGACTGCGTGGGCACA 62.034 55.000 15.78 0.00 46.21 4.57
416 417 1.301401 TTAGTGACTGCGTGGGCAC 60.301 57.895 7.50 7.50 46.21 5.01
418 419 0.673644 ATGTTAGTGACTGCGTGGGC 60.674 55.000 0.00 0.00 40.52 5.36
419 420 1.078709 CATGTTAGTGACTGCGTGGG 58.921 55.000 0.00 0.00 0.00 4.61
420 421 1.078709 CCATGTTAGTGACTGCGTGG 58.921 55.000 13.19 13.19 0.00 4.94
421 422 0.443869 GCCATGTTAGTGACTGCGTG 59.556 55.000 0.00 0.00 0.00 5.34
422 423 1.014044 CGCCATGTTAGTGACTGCGT 61.014 55.000 4.81 0.00 37.00 5.24
423 424 1.695893 CCGCCATGTTAGTGACTGCG 61.696 60.000 5.86 5.86 39.45 5.18
424 425 1.369091 CCCGCCATGTTAGTGACTGC 61.369 60.000 0.00 0.00 0.00 4.40
425 426 1.369091 GCCCGCCATGTTAGTGACTG 61.369 60.000 0.00 0.00 0.00 3.51
426 427 1.078426 GCCCGCCATGTTAGTGACT 60.078 57.895 0.00 0.00 0.00 3.41
427 428 2.112815 GGCCCGCCATGTTAGTGAC 61.113 63.158 0.00 0.00 35.81 3.67
428 429 2.270850 GGCCCGCCATGTTAGTGA 59.729 61.111 0.00 0.00 35.81 3.41
429 430 2.828549 GGGCCCGCCATGTTAGTG 60.829 66.667 5.69 0.00 37.98 2.74
430 431 3.334891 TGGGCCCGCCATGTTAGT 61.335 61.111 19.37 0.00 37.98 2.24
431 432 2.828549 GTGGGCCCGCCATGTTAG 60.829 66.667 25.93 0.00 37.98 2.34
432 433 4.434354 GGTGGGCCCGCCATGTTA 62.434 66.667 43.74 10.18 45.34 2.41
468 469 4.812476 TCCGATTGTGCCGAGGCG 62.812 66.667 9.78 0.00 45.51 5.52
469 470 3.195698 GTCCGATTGTGCCGAGGC 61.196 66.667 7.26 7.26 42.35 4.70
470 471 2.511600 GGTCCGATTGTGCCGAGG 60.512 66.667 0.00 0.00 0.00 4.63
471 472 1.811266 CTGGTCCGATTGTGCCGAG 60.811 63.158 0.00 0.00 0.00 4.63
472 473 2.264480 CTGGTCCGATTGTGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
473 474 2.819595 CCTGGTCCGATTGTGCCG 60.820 66.667 0.00 0.00 0.00 5.69
474 475 3.134127 GCCTGGTCCGATTGTGCC 61.134 66.667 0.00 0.00 0.00 5.01
475 476 3.499737 CGCCTGGTCCGATTGTGC 61.500 66.667 0.00 0.00 0.00 4.57
476 477 2.047274 ACGCCTGGTCCGATTGTG 60.047 61.111 0.64 0.00 0.00 3.33
477 478 2.047274 CACGCCTGGTCCGATTGT 60.047 61.111 0.64 0.00 0.00 2.71
478 479 3.499737 GCACGCCTGGTCCGATTG 61.500 66.667 0.64 0.00 0.00 2.67
497 498 4.742201 TGGACGCGCTGCTTCTCC 62.742 66.667 5.73 4.00 0.00 3.71
498 499 1.841663 TTTTGGACGCGCTGCTTCTC 61.842 55.000 5.73 0.00 0.00 2.87
499 500 1.891919 TTTTGGACGCGCTGCTTCT 60.892 52.632 5.73 0.00 0.00 2.85
500 501 1.725973 GTTTTGGACGCGCTGCTTC 60.726 57.895 5.73 0.00 0.00 3.86
501 502 2.331451 GTTTTGGACGCGCTGCTT 59.669 55.556 5.73 0.00 0.00 3.91
502 503 3.660111 GGTTTTGGACGCGCTGCT 61.660 61.111 5.73 0.00 0.00 4.24
504 505 3.342627 TCGGTTTTGGACGCGCTG 61.343 61.111 5.73 1.02 0.00 5.18
505 506 3.343421 GTCGGTTTTGGACGCGCT 61.343 61.111 5.73 0.00 0.00 5.92
506 507 3.170810 TTGTCGGTTTTGGACGCGC 62.171 57.895 5.73 0.00 37.22 6.86
507 508 1.083015 CTTGTCGGTTTTGGACGCG 60.083 57.895 3.53 3.53 37.22 6.01
508 509 0.658897 TTCTTGTCGGTTTTGGACGC 59.341 50.000 0.00 0.00 37.22 5.19
509 510 3.103007 GTTTTCTTGTCGGTTTTGGACG 58.897 45.455 0.00 0.00 37.22 4.79
510 511 3.855379 GTGTTTTCTTGTCGGTTTTGGAC 59.145 43.478 0.00 0.00 34.99 4.02
511 512 3.119424 GGTGTTTTCTTGTCGGTTTTGGA 60.119 43.478 0.00 0.00 0.00 3.53
512 513 3.119280 AGGTGTTTTCTTGTCGGTTTTGG 60.119 43.478 0.00 0.00 0.00 3.28
513 514 3.857093 CAGGTGTTTTCTTGTCGGTTTTG 59.143 43.478 0.00 0.00 0.00 2.44
514 515 3.119280 CCAGGTGTTTTCTTGTCGGTTTT 60.119 43.478 0.00 0.00 0.00 2.43
515 516 2.425668 CCAGGTGTTTTCTTGTCGGTTT 59.574 45.455 0.00 0.00 0.00 3.27
516 517 2.021457 CCAGGTGTTTTCTTGTCGGTT 58.979 47.619 0.00 0.00 0.00 4.44
517 518 1.210967 TCCAGGTGTTTTCTTGTCGGT 59.789 47.619 0.00 0.00 0.00 4.69
518 519 1.602377 GTCCAGGTGTTTTCTTGTCGG 59.398 52.381 0.00 0.00 0.00 4.79
519 520 1.602377 GGTCCAGGTGTTTTCTTGTCG 59.398 52.381 0.00 0.00 0.00 4.35
520 521 1.602377 CGGTCCAGGTGTTTTCTTGTC 59.398 52.381 0.00 0.00 0.00 3.18
521 522 1.675552 CGGTCCAGGTGTTTTCTTGT 58.324 50.000 0.00 0.00 0.00 3.16
522 523 0.310854 GCGGTCCAGGTGTTTTCTTG 59.689 55.000 0.00 0.00 0.00 3.02
523 524 1.164041 CGCGGTCCAGGTGTTTTCTT 61.164 55.000 0.00 0.00 0.00 2.52
524 525 1.597027 CGCGGTCCAGGTGTTTTCT 60.597 57.895 0.00 0.00 0.00 2.52
525 526 2.943653 CGCGGTCCAGGTGTTTTC 59.056 61.111 0.00 0.00 0.00 2.29
526 527 3.284449 GCGCGGTCCAGGTGTTTT 61.284 61.111 8.83 0.00 0.00 2.43
550 551 3.272334 GATGGCGTGGGATCGTGC 61.272 66.667 0.00 0.00 0.00 5.34
551 552 2.961721 CGATGGCGTGGGATCGTG 60.962 66.667 0.00 0.00 37.33 4.35
552 553 4.891727 GCGATGGCGTGGGATCGT 62.892 66.667 0.00 0.00 42.77 3.73
553 554 4.889856 TGCGATGGCGTGGGATCG 62.890 66.667 0.00 0.00 44.10 3.69
554 555 3.272334 GTGCGATGGCGTGGGATC 61.272 66.667 0.00 0.00 44.10 3.36
588 589 3.540014 CTCGACGCGCTGCTTGAG 61.540 66.667 5.73 0.95 0.00 3.02
600 601 3.707156 TAGTACGCGTGCGCTCGAC 62.707 63.158 33.22 22.16 44.19 4.20
601 602 2.313717 ATTAGTACGCGTGCGCTCGA 62.314 55.000 33.22 11.76 44.19 4.04
602 603 0.655337 TATTAGTACGCGTGCGCTCG 60.655 55.000 26.07 26.07 44.19 5.03
603 604 1.382419 CATATTAGTACGCGTGCGCTC 59.618 52.381 24.59 3.51 44.19 5.03
604 605 1.268896 ACATATTAGTACGCGTGCGCT 60.269 47.619 24.59 18.74 44.19 5.92
605 606 1.126079 ACATATTAGTACGCGTGCGC 58.874 50.000 24.59 12.09 44.19 6.09
606 607 5.490472 AAATACATATTAGTACGCGTGCG 57.510 39.130 24.59 13.39 46.03 5.34
607 608 6.583806 ACCTAAATACATATTAGTACGCGTGC 59.416 38.462 24.59 22.34 0.00 5.34
608 609 8.511465 AACCTAAATACATATTAGTACGCGTG 57.489 34.615 24.59 4.54 0.00 5.34
609 610 9.533253 AAAACCTAAATACATATTAGTACGCGT 57.467 29.630 19.17 19.17 0.00 6.01
639 640 9.685276 TGCTTATAATCCAATCTCTCTCAAAAA 57.315 29.630 0.00 0.00 0.00 1.94
640 641 9.334947 CTGCTTATAATCCAATCTCTCTCAAAA 57.665 33.333 0.00 0.00 0.00 2.44
641 642 8.489489 ACTGCTTATAATCCAATCTCTCTCAAA 58.511 33.333 0.00 0.00 0.00 2.69
642 643 7.930325 CACTGCTTATAATCCAATCTCTCTCAA 59.070 37.037 0.00 0.00 0.00 3.02
643 644 7.440198 CACTGCTTATAATCCAATCTCTCTCA 58.560 38.462 0.00 0.00 0.00 3.27
644 645 6.368516 GCACTGCTTATAATCCAATCTCTCTC 59.631 42.308 0.00 0.00 0.00 3.20
645 646 6.183361 TGCACTGCTTATAATCCAATCTCTCT 60.183 38.462 1.98 0.00 0.00 3.10
646 647 5.994054 TGCACTGCTTATAATCCAATCTCTC 59.006 40.000 1.98 0.00 0.00 3.20
647 648 5.933617 TGCACTGCTTATAATCCAATCTCT 58.066 37.500 1.98 0.00 0.00 3.10
648 649 6.038603 TGTTGCACTGCTTATAATCCAATCTC 59.961 38.462 1.98 0.00 0.00 2.75
649 650 5.887598 TGTTGCACTGCTTATAATCCAATCT 59.112 36.000 1.98 0.00 0.00 2.40
650 651 6.135290 TGTTGCACTGCTTATAATCCAATC 57.865 37.500 1.98 0.00 0.00 2.67
651 652 6.239120 GGATGTTGCACTGCTTATAATCCAAT 60.239 38.462 1.98 0.00 0.00 3.16
652 653 5.067674 GGATGTTGCACTGCTTATAATCCAA 59.932 40.000 1.98 0.00 0.00 3.53
653 654 4.580167 GGATGTTGCACTGCTTATAATCCA 59.420 41.667 1.98 0.00 0.00 3.41
654 655 4.319766 CGGATGTTGCACTGCTTATAATCC 60.320 45.833 1.98 7.04 0.00 3.01
655 656 4.776743 CGGATGTTGCACTGCTTATAATC 58.223 43.478 1.98 0.00 0.00 1.75
656 657 3.003689 GCGGATGTTGCACTGCTTATAAT 59.996 43.478 1.98 0.00 35.76 1.28
657 658 2.354510 GCGGATGTTGCACTGCTTATAA 59.645 45.455 1.98 0.00 35.76 0.98
658 659 1.939934 GCGGATGTTGCACTGCTTATA 59.060 47.619 1.98 0.00 35.76 0.98
659 660 0.734889 GCGGATGTTGCACTGCTTAT 59.265 50.000 1.98 0.00 35.76 1.73
660 661 1.634757 CGCGGATGTTGCACTGCTTA 61.635 55.000 0.00 0.00 36.40 3.09
661 662 2.956987 GCGGATGTTGCACTGCTT 59.043 55.556 1.98 0.00 35.76 3.91
682 683 0.531311 TCTGCATGCCTATCTGCACG 60.531 55.000 16.68 0.00 45.48 5.34
687 688 5.692928 AGAATTCTTTCTGCATGCCTATCT 58.307 37.500 16.68 3.19 40.74 1.98
715 2651 1.511850 TTTGACGACATGAGCAGTGG 58.488 50.000 0.00 0.00 0.00 4.00
723 2659 2.096496 GGGCAGAGAATTTGACGACATG 59.904 50.000 0.00 0.00 0.00 3.21
779 2715 2.159128 ACTGATCGGTTGCATCTCTCTG 60.159 50.000 0.00 0.00 0.00 3.35
785 2721 1.017387 GGGAACTGATCGGTTGCATC 58.983 55.000 32.02 17.26 38.89 3.91
791 2727 6.113411 CACTATTTAAAGGGAACTGATCGGT 58.887 40.000 0.00 0.00 42.68 4.69
985 2921 1.460504 GCCATGATCGCCATCATCAT 58.539 50.000 3.56 0.00 45.26 2.45
1173 3112 1.341852 GGTGGTGGGCATTTAACGTTT 59.658 47.619 5.91 0.00 0.00 3.60
1352 3327 9.709495 CTGAATAAACTGAAATGGAAAAATCCA 57.291 29.630 0.00 0.00 44.85 3.41
1375 3353 7.996066 ACTAGCTCAGATTTAGACATAGTCTGA 59.004 37.037 9.78 0.00 43.30 3.27
1553 3539 7.884877 TGATCATCTAAACAATGACTGGTTCTT 59.115 33.333 0.00 0.00 36.06 2.52
1594 3580 5.897250 TGACATATAGAAGCTGAGGGTACAA 59.103 40.000 0.00 0.00 0.00 2.41
1595 3581 5.302059 GTGACATATAGAAGCTGAGGGTACA 59.698 44.000 0.00 0.00 0.00 2.90
1596 3582 5.302059 TGTGACATATAGAAGCTGAGGGTAC 59.698 44.000 0.00 0.00 0.00 3.34
1597 3583 5.454966 TGTGACATATAGAAGCTGAGGGTA 58.545 41.667 0.00 0.00 0.00 3.69
1598 3584 4.290093 TGTGACATATAGAAGCTGAGGGT 58.710 43.478 0.00 0.00 0.00 4.34
1602 3588 9.755804 CTCTTAAATGTGACATATAGAAGCTGA 57.244 33.333 0.00 0.00 0.00 4.26
1641 3627 4.537965 CGACAAGAATATCTCCTACCACG 58.462 47.826 0.00 0.00 0.00 4.94
1649 3635 4.213694 TCTCGCTACCGACAAGAATATCTC 59.786 45.833 0.00 0.00 38.82 2.75
1654 3640 2.427453 ACATCTCGCTACCGACAAGAAT 59.573 45.455 0.00 0.00 38.82 2.40
1691 3682 1.209019 AGAGCTGCGGATGTTCAAGAT 59.791 47.619 0.00 0.00 0.00 2.40
1699 3690 0.599728 GAAGGCTAGAGCTGCGGATG 60.600 60.000 0.00 0.00 41.70 3.51
1718 3709 7.008992 GTGACTATAAGTTAGCAGTGTTTACCG 59.991 40.741 5.00 0.00 0.00 4.02
1734 3725 1.873591 GCCGCAATGGGTGACTATAAG 59.126 52.381 0.00 0.00 38.63 1.73
2166 4247 1.453745 TTGATTCCCTGCCGCATCC 60.454 57.895 0.00 0.00 0.00 3.51
2168 4249 1.754234 GGTTGATTCCCTGCCGCAT 60.754 57.895 0.00 0.00 0.00 4.73
2178 4259 4.755411 TGTGATTAGGTCGAGGTTGATTC 58.245 43.478 0.00 0.00 0.00 2.52
2180 4261 3.430929 GCTGTGATTAGGTCGAGGTTGAT 60.431 47.826 0.00 0.00 0.00 2.57
2182 4263 2.093973 AGCTGTGATTAGGTCGAGGTTG 60.094 50.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.