Multiple sequence alignment - TraesCS7B01G105600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G105600 chr7B 100.000 3341 0 0 1 3341 121882731 121886071 0.000000e+00 6170
1 TraesCS7B01G105600 chr7B 98.039 306 6 0 2847 3152 578119523 578119218 1.760000e-147 532
2 TraesCS7B01G105600 chr7D 92.008 2878 142 32 15 2848 160627981 160630814 0.000000e+00 3960
3 TraesCS7B01G105600 chr7D 84.794 993 106 22 1617 2608 32370777 32371725 0.000000e+00 955
4 TraesCS7B01G105600 chr7A 89.487 2825 165 63 16 2793 161731209 161733948 0.000000e+00 3450
5 TraesCS7B01G105600 chr7A 83.015 524 55 22 2085 2608 180639723 180639234 8.510000e-121 444
6 TraesCS7B01G105600 chr7A 82.543 527 59 17 2082 2608 63575181 63575674 1.840000e-117 433
7 TraesCS7B01G105600 chr6B 87.972 1272 119 16 1078 2345 197247826 197246585 0.000000e+00 1471
8 TraesCS7B01G105600 chr6B 74.745 1275 264 43 1093 2341 603771651 603772893 4.940000e-143 518
9 TraesCS7B01G105600 chr6B 83.394 277 29 11 2336 2608 197246259 197245996 1.200000e-59 241
10 TraesCS7B01G105600 chr5A 82.444 1555 163 55 1072 2608 119028973 119027511 0.000000e+00 1258
11 TraesCS7B01G105600 chr5A 82.749 1084 110 36 1526 2608 592641135 592642142 0.000000e+00 894
12 TraesCS7B01G105600 chr1B 83.146 1246 152 28 1361 2605 41746952 41748140 0.000000e+00 1085
13 TraesCS7B01G105600 chr1B 87.809 566 64 4 1604 2167 136919488 136920050 0.000000e+00 658
14 TraesCS7B01G105600 chr1B 96.785 311 10 0 2846 3156 679359663 679359973 1.370000e-143 520
15 TraesCS7B01G105600 chr2B 85.204 980 106 17 1218 2193 773462368 773463312 0.000000e+00 970
16 TraesCS7B01G105600 chr2B 97.436 312 7 1 2846 3156 790272042 790271731 6.350000e-147 531
17 TraesCS7B01G105600 chr2B 97.106 311 9 0 2846 3156 97951245 97951555 2.950000e-145 525
18 TraesCS7B01G105600 chr2B 96.463 311 11 0 2846 3156 781199413 781199723 6.390000e-142 514
19 TraesCS7B01G105600 chr3B 84.151 978 125 17 1218 2193 543582066 543583015 0.000000e+00 920
20 TraesCS7B01G105600 chr3B 81.400 500 50 19 2110 2608 110277182 110276725 5.270000e-98 368
21 TraesCS7B01G105600 chr5B 82.472 1084 113 36 1526 2608 75684748 75683741 0.000000e+00 878
22 TraesCS7B01G105600 chr6A 75.587 1278 248 48 1093 2341 549322005 549323247 1.040000e-159 573
23 TraesCS7B01G105600 chrUn 98.071 311 6 0 2846 3156 273414470 273414160 2.930000e-150 542
24 TraesCS7B01G105600 chrUn 98.071 311 6 0 2846 3156 303170635 303170325 2.930000e-150 542
25 TraesCS7B01G105600 chr2D 96.785 311 10 0 2846 3156 60590117 60590427 1.370000e-143 520
26 TraesCS7B01G105600 chr2D 96.452 310 10 1 2847 3156 100559437 100559745 8.270000e-141 510
27 TraesCS7B01G105600 chr2D 80.759 395 30 15 1072 1465 1671713 1672062 1.980000e-67 267
28 TraesCS7B01G105600 chr4B 84.052 232 30 5 1096 1322 479398126 479398355 2.020000e-52 217
29 TraesCS7B01G105600 chr4D 81.716 268 37 11 1060 1322 389494963 389495223 2.610000e-51 213
30 TraesCS7B01G105600 chr4A 83.621 232 31 6 1096 1322 71166223 71166452 9.390000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G105600 chr7B 121882731 121886071 3340 False 6170 6170 100.000 1 3341 1 chr7B.!!$F1 3340
1 TraesCS7B01G105600 chr7D 160627981 160630814 2833 False 3960 3960 92.008 15 2848 1 chr7D.!!$F2 2833
2 TraesCS7B01G105600 chr7D 32370777 32371725 948 False 955 955 84.794 1617 2608 1 chr7D.!!$F1 991
3 TraesCS7B01G105600 chr7A 161731209 161733948 2739 False 3450 3450 89.487 16 2793 1 chr7A.!!$F2 2777
4 TraesCS7B01G105600 chr6B 197245996 197247826 1830 True 856 1471 85.683 1078 2608 2 chr6B.!!$R1 1530
5 TraesCS7B01G105600 chr6B 603771651 603772893 1242 False 518 518 74.745 1093 2341 1 chr6B.!!$F1 1248
6 TraesCS7B01G105600 chr5A 119027511 119028973 1462 True 1258 1258 82.444 1072 2608 1 chr5A.!!$R1 1536
7 TraesCS7B01G105600 chr5A 592641135 592642142 1007 False 894 894 82.749 1526 2608 1 chr5A.!!$F1 1082
8 TraesCS7B01G105600 chr1B 41746952 41748140 1188 False 1085 1085 83.146 1361 2605 1 chr1B.!!$F1 1244
9 TraesCS7B01G105600 chr1B 136919488 136920050 562 False 658 658 87.809 1604 2167 1 chr1B.!!$F2 563
10 TraesCS7B01G105600 chr2B 773462368 773463312 944 False 970 970 85.204 1218 2193 1 chr2B.!!$F2 975
11 TraesCS7B01G105600 chr3B 543582066 543583015 949 False 920 920 84.151 1218 2193 1 chr3B.!!$F1 975
12 TraesCS7B01G105600 chr5B 75683741 75684748 1007 True 878 878 82.472 1526 2608 1 chr5B.!!$R1 1082
13 TraesCS7B01G105600 chr6A 549322005 549323247 1242 False 573 573 75.587 1093 2341 1 chr6A.!!$F1 1248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1073 0.246635 TTCTCTGTCCCAACTAGCGC 59.753 55.0 0.0 0.0 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2930 3426 0.035152 TGCTGTATGGCTTGGGTCAG 60.035 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
257 289 3.943137 ATCCCCAGCCAACCGGAGA 62.943 63.158 9.46 0.00 0.00 3.71
259 291 2.359975 CCCAGCCAACCGGAGAAC 60.360 66.667 9.46 0.00 0.00 3.01
291 323 2.957489 CGGACACGCACAACACGA 60.957 61.111 0.00 0.00 0.00 4.35
310 344 2.222445 CGACGTACCAAGTCCAAAAAGG 59.778 50.000 0.00 0.00 35.33 3.11
324 358 3.304057 CCAAAAAGGCTCGACAGAAAGAC 60.304 47.826 0.00 0.00 0.00 3.01
342 376 3.486383 AGACACCATTTTGTACAGTGGG 58.514 45.455 21.04 13.38 36.05 4.61
755 810 2.022129 CGCACAAGTCCACGAGTCC 61.022 63.158 0.00 0.00 0.00 3.85
806 861 2.604686 TCACGCTGCTTCCCTCCT 60.605 61.111 0.00 0.00 0.00 3.69
831 886 5.094387 CCACTCCACAACCTATATATCCCT 58.906 45.833 0.00 0.00 0.00 4.20
836 891 5.318889 TCCACAACCTATATATCCCTCTCCT 59.681 44.000 0.00 0.00 0.00 3.69
839 894 5.318889 ACAACCTATATATCCCTCTCCTCCA 59.681 44.000 0.00 0.00 0.00 3.86
865 920 1.934459 TACCTCCCCCAGTCCTCGAG 61.934 65.000 5.13 5.13 0.00 4.04
868 923 2.685380 CCCCCAGTCCTCGAGCTT 60.685 66.667 6.99 0.00 0.00 3.74
870 925 1.679898 CCCCAGTCCTCGAGCTTTT 59.320 57.895 6.99 0.00 0.00 2.27
921 986 3.138304 CAACGACTTCAACTCCATTCCA 58.862 45.455 0.00 0.00 0.00 3.53
959 1049 2.086426 GCAACGTGCGACTCGATCA 61.086 57.895 1.63 0.00 31.71 2.92
970 1060 2.031560 CGACTCGATCACCTCTTCTCTG 59.968 54.545 0.00 0.00 0.00 3.35
973 1063 2.357637 CTCGATCACCTCTTCTCTGTCC 59.642 54.545 0.00 0.00 0.00 4.02
978 1068 1.974236 CACCTCTTCTCTGTCCCAACT 59.026 52.381 0.00 0.00 0.00 3.16
979 1069 3.165875 CACCTCTTCTCTGTCCCAACTA 58.834 50.000 0.00 0.00 0.00 2.24
980 1070 3.194542 CACCTCTTCTCTGTCCCAACTAG 59.805 52.174 0.00 0.00 0.00 2.57
981 1071 2.167487 CCTCTTCTCTGTCCCAACTAGC 59.833 54.545 0.00 0.00 0.00 3.42
982 1072 1.819288 TCTTCTCTGTCCCAACTAGCG 59.181 52.381 0.00 0.00 0.00 4.26
983 1073 0.246635 TTCTCTGTCCCAACTAGCGC 59.753 55.000 0.00 0.00 0.00 5.92
984 1074 1.517257 CTCTGTCCCAACTAGCGCG 60.517 63.158 0.00 0.00 0.00 6.86
1785 1926 0.938008 CCGTCGACATCATCTCGAGA 59.062 55.000 19.19 19.19 40.72 4.04
2076 2219 3.616956 CCAGTGCTGGTCAAGAAGATA 57.383 47.619 9.96 0.00 45.53 1.98
2341 2822 2.643933 GCTCAAGAGGCCATTTTGAC 57.356 50.000 5.01 3.60 0.00 3.18
2380 2861 0.465460 TTTGGCGTCTGCTTTCACCT 60.465 50.000 0.00 0.00 42.25 4.00
2383 2864 0.040067 GGCGTCTGCTTTCACCTTTG 60.040 55.000 0.00 0.00 42.25 2.77
2384 2865 0.663153 GCGTCTGCTTTCACCTTTGT 59.337 50.000 0.00 0.00 38.39 2.83
2425 2906 7.442364 GGAGCTAGATTAGATGTGTGCATAAAA 59.558 37.037 0.00 0.00 35.07 1.52
2426 2907 8.147642 AGCTAGATTAGATGTGTGCATAAAAC 57.852 34.615 0.00 0.00 35.07 2.43
2427 2908 7.770433 AGCTAGATTAGATGTGTGCATAAAACA 59.230 33.333 0.00 0.00 35.07 2.83
2428 2909 8.397906 GCTAGATTAGATGTGTGCATAAAACAA 58.602 33.333 0.00 0.00 35.07 2.83
2522 3009 7.272244 TCAACACAGAAGAGAACTGAACATTA 58.728 34.615 0.00 0.00 38.55 1.90
2556 3050 9.276397 GTTGCCATATTTAATTTTTGCACAATC 57.724 29.630 0.00 0.00 0.00 2.67
2594 3088 7.477422 CCGTGTAATTTACGATTTTGAAGTGAG 59.523 37.037 14.24 0.00 43.82 3.51
2629 3123 1.026718 GTGCCCAGAATTCCACGAGG 61.027 60.000 0.65 0.00 0.00 4.63
2630 3124 1.198094 TGCCCAGAATTCCACGAGGA 61.198 55.000 0.65 0.00 43.93 3.71
2631 3125 0.462759 GCCCAGAATTCCACGAGGAG 60.463 60.000 0.78 0.00 46.74 3.69
2650 3144 5.501156 AGGAGTTGGGAAACATGAGATTAC 58.499 41.667 0.00 0.00 0.00 1.89
2652 3146 5.710099 GGAGTTGGGAAACATGAGATTACAA 59.290 40.000 0.00 0.00 0.00 2.41
2653 3147 6.208599 GGAGTTGGGAAACATGAGATTACAAA 59.791 38.462 0.00 0.00 0.00 2.83
2654 3148 7.255801 GGAGTTGGGAAACATGAGATTACAAAA 60.256 37.037 0.00 0.00 0.00 2.44
2682 3176 8.196771 AGAAACAAATAAACATCAAACTGAGCA 58.803 29.630 0.00 0.00 0.00 4.26
2711 3205 3.543536 GATCGGCCCAGGCTCATCC 62.544 68.421 8.89 0.00 41.60 3.51
2727 3221 6.499699 AGGCTCATCCACTATCTATGATCAAA 59.500 38.462 0.00 0.00 37.29 2.69
2728 3222 6.593382 GGCTCATCCACTATCTATGATCAAAC 59.407 42.308 0.00 0.00 34.01 2.93
2731 3225 9.551734 CTCATCCACTATCTATGATCAAACAAA 57.448 33.333 0.00 0.00 0.00 2.83
2810 3305 3.393089 AAGTGAAAGATGCTCGAGTGT 57.607 42.857 15.13 2.55 0.00 3.55
2830 3325 0.454452 GTCCGGAGCGTGCAAAATTC 60.454 55.000 3.06 0.00 0.00 2.17
2876 3372 9.997482 TTTTGCGGAATAATTCTTGTATTACTC 57.003 29.630 0.00 0.00 0.00 2.59
2877 3373 7.402811 TGCGGAATAATTCTTGTATTACTCG 57.597 36.000 0.00 0.00 0.00 4.18
2878 3374 7.204604 TGCGGAATAATTCTTGTATTACTCGA 58.795 34.615 0.00 0.00 0.00 4.04
2879 3375 7.870954 TGCGGAATAATTCTTGTATTACTCGAT 59.129 33.333 0.00 0.00 0.00 3.59
2880 3376 8.373992 GCGGAATAATTCTTGTATTACTCGATC 58.626 37.037 0.00 0.00 0.00 3.69
2881 3377 8.576281 CGGAATAATTCTTGTATTACTCGATCG 58.424 37.037 9.36 9.36 0.00 3.69
2882 3378 9.622004 GGAATAATTCTTGTATTACTCGATCGA 57.378 33.333 18.32 18.32 0.00 3.59
2886 3382 8.697846 AATTCTTGTATTACTCGATCGAAACA 57.302 30.769 19.92 14.40 0.00 2.83
2887 3383 7.502177 TTCTTGTATTACTCGATCGAAACAC 57.498 36.000 19.92 11.33 0.00 3.32
2888 3384 6.614160 TCTTGTATTACTCGATCGAAACACA 58.386 36.000 19.92 13.86 0.00 3.72
2889 3385 6.745907 TCTTGTATTACTCGATCGAAACACAG 59.254 38.462 19.92 8.73 0.00 3.66
2890 3386 5.946298 TGTATTACTCGATCGAAACACAGT 58.054 37.500 19.92 14.24 0.00 3.55
2891 3387 6.384224 TGTATTACTCGATCGAAACACAGTT 58.616 36.000 19.92 1.24 0.00 3.16
2892 3388 7.529158 TGTATTACTCGATCGAAACACAGTTA 58.471 34.615 19.92 6.68 0.00 2.24
2893 3389 6.866179 ATTACTCGATCGAAACACAGTTAC 57.134 37.500 19.92 0.00 0.00 2.50
2894 3390 4.233123 ACTCGATCGAAACACAGTTACA 57.767 40.909 19.92 0.00 0.00 2.41
2895 3391 4.227538 ACTCGATCGAAACACAGTTACAG 58.772 43.478 19.92 4.99 0.00 2.74
2896 3392 4.227538 CTCGATCGAAACACAGTTACAGT 58.772 43.478 19.92 0.00 0.00 3.55
2897 3393 4.224433 TCGATCGAAACACAGTTACAGTC 58.776 43.478 16.99 0.00 0.00 3.51
2898 3394 3.978855 CGATCGAAACACAGTTACAGTCA 59.021 43.478 10.26 0.00 0.00 3.41
2899 3395 4.143597 CGATCGAAACACAGTTACAGTCAC 60.144 45.833 10.26 0.00 0.00 3.67
2900 3396 3.110358 TCGAAACACAGTTACAGTCACG 58.890 45.455 0.00 0.00 0.00 4.35
2901 3397 2.347292 CGAAACACAGTTACAGTCACGC 60.347 50.000 0.00 0.00 0.00 5.34
2902 3398 2.596904 AACACAGTTACAGTCACGCT 57.403 45.000 0.00 0.00 0.00 5.07
2903 3399 2.596904 ACACAGTTACAGTCACGCTT 57.403 45.000 0.00 0.00 0.00 4.68
2904 3400 3.720949 ACACAGTTACAGTCACGCTTA 57.279 42.857 0.00 0.00 0.00 3.09
2905 3401 4.049546 ACACAGTTACAGTCACGCTTAA 57.950 40.909 0.00 0.00 0.00 1.85
2906 3402 3.800506 ACACAGTTACAGTCACGCTTAAC 59.199 43.478 0.00 0.00 0.00 2.01
2907 3403 3.799963 CACAGTTACAGTCACGCTTAACA 59.200 43.478 0.00 0.00 0.00 2.41
2908 3404 4.269123 CACAGTTACAGTCACGCTTAACAA 59.731 41.667 0.00 0.00 0.00 2.83
2909 3405 4.269363 ACAGTTACAGTCACGCTTAACAAC 59.731 41.667 0.00 0.00 0.00 3.32
2910 3406 3.488310 AGTTACAGTCACGCTTAACAACG 59.512 43.478 0.00 0.00 0.00 4.10
2911 3407 1.930567 ACAGTCACGCTTAACAACGT 58.069 45.000 0.00 0.00 44.75 3.99
2912 3408 1.856597 ACAGTCACGCTTAACAACGTC 59.143 47.619 0.00 0.00 41.32 4.34
2913 3409 1.191647 CAGTCACGCTTAACAACGTCC 59.808 52.381 0.00 0.00 41.32 4.79
2914 3410 1.202440 AGTCACGCTTAACAACGTCCA 60.202 47.619 0.00 0.00 41.32 4.02
2915 3411 1.593933 GTCACGCTTAACAACGTCCAA 59.406 47.619 0.00 0.00 41.32 3.53
2916 3412 2.030701 GTCACGCTTAACAACGTCCAAA 59.969 45.455 0.00 0.00 41.32 3.28
2917 3413 2.676839 TCACGCTTAACAACGTCCAAAA 59.323 40.909 0.00 0.00 41.32 2.44
2918 3414 2.779471 CACGCTTAACAACGTCCAAAAC 59.221 45.455 0.00 0.00 41.32 2.43
2928 3424 2.641197 GTCCAAAACGGCATCTGGT 58.359 52.632 0.00 0.00 33.14 4.00
2929 3425 0.521735 GTCCAAAACGGCATCTGGTC 59.478 55.000 0.00 0.00 33.14 4.02
2930 3426 0.608035 TCCAAAACGGCATCTGGTCC 60.608 55.000 0.00 0.00 33.14 4.46
2931 3427 0.609131 CCAAAACGGCATCTGGTCCT 60.609 55.000 0.00 0.00 0.00 3.85
2932 3428 0.523072 CAAAACGGCATCTGGTCCTG 59.477 55.000 0.00 0.00 0.00 3.86
2933 3429 0.400213 AAAACGGCATCTGGTCCTGA 59.600 50.000 0.28 0.28 0.00 3.86
2934 3430 0.321653 AAACGGCATCTGGTCCTGAC 60.322 55.000 0.00 0.00 0.00 3.51
2943 3439 3.090765 GGTCCTGACCCAAGCCAT 58.909 61.111 4.93 0.00 45.68 4.40
2944 3440 2.307153 GGTCCTGACCCAAGCCATA 58.693 57.895 4.93 0.00 45.68 2.74
2945 3441 0.107165 GGTCCTGACCCAAGCCATAC 60.107 60.000 4.93 0.00 45.68 2.39
2946 3442 0.618458 GTCCTGACCCAAGCCATACA 59.382 55.000 0.00 0.00 0.00 2.29
2947 3443 0.911769 TCCTGACCCAAGCCATACAG 59.088 55.000 0.00 0.00 0.00 2.74
2948 3444 0.749454 CCTGACCCAAGCCATACAGC 60.749 60.000 0.00 0.00 0.00 4.40
2949 3445 0.035152 CTGACCCAAGCCATACAGCA 60.035 55.000 0.00 0.00 34.23 4.41
2950 3446 0.403655 TGACCCAAGCCATACAGCAA 59.596 50.000 0.00 0.00 34.23 3.91
2951 3447 1.005805 TGACCCAAGCCATACAGCAAT 59.994 47.619 0.00 0.00 34.23 3.56
2952 3448 2.102578 GACCCAAGCCATACAGCAATT 58.897 47.619 0.00 0.00 34.23 2.32
2953 3449 2.099756 GACCCAAGCCATACAGCAATTC 59.900 50.000 0.00 0.00 34.23 2.17
2954 3450 1.066002 CCCAAGCCATACAGCAATTCG 59.934 52.381 0.00 0.00 34.23 3.34
2955 3451 1.066002 CCAAGCCATACAGCAATTCGG 59.934 52.381 0.00 0.00 34.23 4.30
2956 3452 0.740737 AAGCCATACAGCAATTCGGC 59.259 50.000 0.00 0.00 39.90 5.54
2957 3453 1.103398 AGCCATACAGCAATTCGGCC 61.103 55.000 0.00 0.00 40.49 6.13
2958 3454 1.103398 GCCATACAGCAATTCGGCCT 61.103 55.000 0.00 0.00 33.31 5.19
2959 3455 1.392589 CCATACAGCAATTCGGCCTT 58.607 50.000 0.00 0.00 0.00 4.35
2960 3456 1.066002 CCATACAGCAATTCGGCCTTG 59.934 52.381 0.00 0.00 0.00 3.61
2961 3457 2.016318 CATACAGCAATTCGGCCTTGA 58.984 47.619 7.37 0.00 0.00 3.02
2962 3458 1.737838 TACAGCAATTCGGCCTTGAG 58.262 50.000 7.37 1.80 0.00 3.02
2963 3459 0.250901 ACAGCAATTCGGCCTTGAGT 60.251 50.000 7.37 2.37 0.00 3.41
2964 3460 0.449388 CAGCAATTCGGCCTTGAGTC 59.551 55.000 7.37 0.00 0.00 3.36
2965 3461 0.678048 AGCAATTCGGCCTTGAGTCC 60.678 55.000 7.37 0.00 0.00 3.85
2966 3462 0.678048 GCAATTCGGCCTTGAGTCCT 60.678 55.000 7.37 0.00 0.00 3.85
2967 3463 1.373570 CAATTCGGCCTTGAGTCCTC 58.626 55.000 0.00 0.00 0.00 3.71
2968 3464 0.253327 AATTCGGCCTTGAGTCCTCC 59.747 55.000 0.00 0.00 0.00 4.30
2969 3465 1.627297 ATTCGGCCTTGAGTCCTCCC 61.627 60.000 0.00 0.00 0.00 4.30
2970 3466 3.003173 CGGCCTTGAGTCCTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
2971 3467 2.370445 CGGCCTTGAGTCCTCCCAT 61.370 63.158 0.00 0.00 0.00 4.00
2972 3468 1.048724 CGGCCTTGAGTCCTCCCATA 61.049 60.000 0.00 0.00 0.00 2.74
2973 3469 0.761802 GGCCTTGAGTCCTCCCATAG 59.238 60.000 0.00 0.00 0.00 2.23
2974 3470 1.501582 GCCTTGAGTCCTCCCATAGT 58.498 55.000 0.00 0.00 0.00 2.12
2975 3471 1.840635 GCCTTGAGTCCTCCCATAGTT 59.159 52.381 0.00 0.00 0.00 2.24
2976 3472 2.420687 GCCTTGAGTCCTCCCATAGTTG 60.421 54.545 0.00 0.00 0.00 3.16
2977 3473 2.171448 CCTTGAGTCCTCCCATAGTTGG 59.829 54.545 0.00 0.00 43.23 3.77
2978 3474 1.204146 TGAGTCCTCCCATAGTTGGC 58.796 55.000 0.00 0.00 42.15 4.52
2979 3475 0.470341 GAGTCCTCCCATAGTTGGCC 59.530 60.000 0.00 0.00 42.15 5.36
2980 3476 0.253160 AGTCCTCCCATAGTTGGCCA 60.253 55.000 0.00 0.00 42.15 5.36
2981 3477 0.623723 GTCCTCCCATAGTTGGCCAA 59.376 55.000 16.05 16.05 42.15 4.52
2982 3478 1.005450 GTCCTCCCATAGTTGGCCAAA 59.995 52.381 22.47 5.91 42.15 3.28
2983 3479 1.713647 TCCTCCCATAGTTGGCCAAAA 59.286 47.619 22.47 12.35 42.15 2.44
2984 3480 1.824852 CCTCCCATAGTTGGCCAAAAC 59.175 52.381 22.47 10.07 42.15 2.43
2985 3481 2.524306 CTCCCATAGTTGGCCAAAACA 58.476 47.619 22.47 8.67 42.15 2.83
2986 3482 3.099141 CTCCCATAGTTGGCCAAAACAT 58.901 45.455 22.47 10.80 42.15 2.71
2987 3483 2.830923 TCCCATAGTTGGCCAAAACATG 59.169 45.455 22.47 21.27 42.15 3.21
2988 3484 2.830923 CCCATAGTTGGCCAAAACATGA 59.169 45.455 22.47 2.06 42.15 3.07
2989 3485 3.368323 CCCATAGTTGGCCAAAACATGAC 60.368 47.826 22.47 6.55 42.15 3.06
2990 3486 3.511146 CCATAGTTGGCCAAAACATGACT 59.489 43.478 22.47 14.63 35.85 3.41
2991 3487 4.704540 CCATAGTTGGCCAAAACATGACTA 59.295 41.667 22.47 16.48 35.85 2.59
2992 3488 5.163622 CCATAGTTGGCCAAAACATGACTAG 60.164 44.000 22.47 9.69 35.85 2.57
2993 3489 4.098914 AGTTGGCCAAAACATGACTAGA 57.901 40.909 22.47 0.00 32.21 2.43
2994 3490 4.469657 AGTTGGCCAAAACATGACTAGAA 58.530 39.130 22.47 0.00 32.21 2.10
2995 3491 5.079643 AGTTGGCCAAAACATGACTAGAAT 58.920 37.500 22.47 0.00 32.21 2.40
2996 3492 5.539955 AGTTGGCCAAAACATGACTAGAATT 59.460 36.000 22.47 0.00 32.21 2.17
2997 3493 6.719370 AGTTGGCCAAAACATGACTAGAATTA 59.281 34.615 22.47 0.00 32.21 1.40
2998 3494 7.397192 AGTTGGCCAAAACATGACTAGAATTAT 59.603 33.333 22.47 0.00 32.21 1.28
2999 3495 7.716799 TGGCCAAAACATGACTAGAATTATT 57.283 32.000 0.61 0.00 0.00 1.40
3000 3496 8.815565 TGGCCAAAACATGACTAGAATTATTA 57.184 30.769 0.61 0.00 0.00 0.98
3001 3497 8.682710 TGGCCAAAACATGACTAGAATTATTAC 58.317 33.333 0.61 0.00 0.00 1.89
3002 3498 8.682710 GGCCAAAACATGACTAGAATTATTACA 58.317 33.333 0.00 0.00 0.00 2.41
3012 3508 9.961265 TGACTAGAATTATTACAACTACGATGG 57.039 33.333 0.00 0.00 0.00 3.51
3026 3522 9.074576 ACAACTACGATGGATATGAGTAATACA 57.925 33.333 0.00 0.00 0.00 2.29
3027 3523 9.908152 CAACTACGATGGATATGAGTAATACAA 57.092 33.333 0.00 0.00 0.00 2.41
3029 3525 9.516546 ACTACGATGGATATGAGTAATACAAGA 57.483 33.333 0.00 0.00 0.00 3.02
3032 3528 8.861086 ACGATGGATATGAGTAATACAAGAACT 58.139 33.333 0.00 0.00 0.00 3.01
3036 3532 9.128404 TGGATATGAGTAATACAAGAACTACGT 57.872 33.333 0.00 0.00 0.00 3.57
3037 3533 9.962783 GGATATGAGTAATACAAGAACTACGTT 57.037 33.333 0.00 0.00 0.00 3.99
3039 3535 7.966157 ATGAGTAATACAAGAACTACGTTCG 57.034 36.000 0.00 0.00 45.96 3.95
3040 3536 6.317088 TGAGTAATACAAGAACTACGTTCGG 58.683 40.000 0.00 1.64 45.96 4.30
3041 3537 6.149308 TGAGTAATACAAGAACTACGTTCGGA 59.851 38.462 0.00 0.00 45.96 4.55
3042 3538 6.317857 AGTAATACAAGAACTACGTTCGGAC 58.682 40.000 0.00 0.00 45.96 4.79
3043 3539 4.771590 ATACAAGAACTACGTTCGGACA 57.228 40.909 0.00 0.00 45.96 4.02
3044 3540 3.655276 ACAAGAACTACGTTCGGACAT 57.345 42.857 0.00 0.00 45.96 3.06
3045 3541 4.771590 ACAAGAACTACGTTCGGACATA 57.228 40.909 0.00 0.00 45.96 2.29
3046 3542 4.479619 ACAAGAACTACGTTCGGACATAC 58.520 43.478 0.00 0.00 45.96 2.39
3047 3543 4.217118 ACAAGAACTACGTTCGGACATACT 59.783 41.667 0.00 0.00 45.96 2.12
3048 3544 5.412594 ACAAGAACTACGTTCGGACATACTA 59.587 40.000 0.00 0.00 45.96 1.82
3049 3545 6.094603 ACAAGAACTACGTTCGGACATACTAT 59.905 38.462 0.00 0.00 45.96 2.12
3050 3546 6.297694 AGAACTACGTTCGGACATACTATC 57.702 41.667 0.00 0.00 45.96 2.08
3051 3547 6.054295 AGAACTACGTTCGGACATACTATCT 58.946 40.000 0.00 0.00 45.96 1.98
3052 3548 6.541641 AGAACTACGTTCGGACATACTATCTT 59.458 38.462 0.00 0.00 45.96 2.40
3053 3549 6.690194 ACTACGTTCGGACATACTATCTTT 57.310 37.500 0.00 0.00 0.00 2.52
3054 3550 7.792374 ACTACGTTCGGACATACTATCTTTA 57.208 36.000 0.00 0.00 0.00 1.85
3055 3551 8.213518 ACTACGTTCGGACATACTATCTTTAA 57.786 34.615 0.00 0.00 0.00 1.52
3056 3552 8.844244 ACTACGTTCGGACATACTATCTTTAAT 58.156 33.333 0.00 0.00 0.00 1.40
3057 3553 9.327529 CTACGTTCGGACATACTATCTTTAATC 57.672 37.037 0.00 0.00 0.00 1.75
3058 3554 7.938715 ACGTTCGGACATACTATCTTTAATCT 58.061 34.615 0.00 0.00 0.00 2.40
3059 3555 8.074972 ACGTTCGGACATACTATCTTTAATCTC 58.925 37.037 0.00 0.00 0.00 2.75
3060 3556 8.291032 CGTTCGGACATACTATCTTTAATCTCT 58.709 37.037 0.00 0.00 0.00 3.10
3061 3557 9.615295 GTTCGGACATACTATCTTTAATCTCTC 57.385 37.037 0.00 0.00 0.00 3.20
3062 3558 9.575868 TTCGGACATACTATCTTTAATCTCTCT 57.424 33.333 0.00 0.00 0.00 3.10
3106 3602 9.958180 TTGATCTATTTGTATCTCCACTTTTCA 57.042 29.630 0.00 0.00 0.00 2.69
3107 3603 9.383519 TGATCTATTTGTATCTCCACTTTTCAC 57.616 33.333 0.00 0.00 0.00 3.18
3108 3604 8.738645 ATCTATTTGTATCTCCACTTTTCACC 57.261 34.615 0.00 0.00 0.00 4.02
3109 3605 7.685481 TCTATTTGTATCTCCACTTTTCACCA 58.315 34.615 0.00 0.00 0.00 4.17
3110 3606 8.328758 TCTATTTGTATCTCCACTTTTCACCAT 58.671 33.333 0.00 0.00 0.00 3.55
3111 3607 6.573664 TTTGTATCTCCACTTTTCACCATG 57.426 37.500 0.00 0.00 0.00 3.66
3112 3608 5.241403 TGTATCTCCACTTTTCACCATGT 57.759 39.130 0.00 0.00 0.00 3.21
3113 3609 5.630121 TGTATCTCCACTTTTCACCATGTT 58.370 37.500 0.00 0.00 0.00 2.71
3114 3610 5.705441 TGTATCTCCACTTTTCACCATGTTC 59.295 40.000 0.00 0.00 0.00 3.18
3115 3611 4.163441 TCTCCACTTTTCACCATGTTCA 57.837 40.909 0.00 0.00 0.00 3.18
3116 3612 3.882888 TCTCCACTTTTCACCATGTTCAC 59.117 43.478 0.00 0.00 0.00 3.18
3117 3613 3.885297 CTCCACTTTTCACCATGTTCACT 59.115 43.478 0.00 0.00 0.00 3.41
3118 3614 3.631686 TCCACTTTTCACCATGTTCACTG 59.368 43.478 0.00 0.00 0.00 3.66
3119 3615 3.374745 CACTTTTCACCATGTTCACTGC 58.625 45.455 0.00 0.00 0.00 4.40
3120 3616 3.067180 CACTTTTCACCATGTTCACTGCT 59.933 43.478 0.00 0.00 0.00 4.24
3121 3617 3.701040 ACTTTTCACCATGTTCACTGCTT 59.299 39.130 0.00 0.00 0.00 3.91
3122 3618 4.160252 ACTTTTCACCATGTTCACTGCTTT 59.840 37.500 0.00 0.00 0.00 3.51
3123 3619 3.988379 TTCACCATGTTCACTGCTTTC 57.012 42.857 0.00 0.00 0.00 2.62
3124 3620 2.929641 TCACCATGTTCACTGCTTTCA 58.070 42.857 0.00 0.00 0.00 2.69
3125 3621 3.286353 TCACCATGTTCACTGCTTTCAA 58.714 40.909 0.00 0.00 0.00 2.69
3126 3622 3.698539 TCACCATGTTCACTGCTTTCAAA 59.301 39.130 0.00 0.00 0.00 2.69
3127 3623 3.798337 CACCATGTTCACTGCTTTCAAAC 59.202 43.478 0.00 0.00 0.00 2.93
3128 3624 3.701040 ACCATGTTCACTGCTTTCAAACT 59.299 39.130 0.00 0.00 0.00 2.66
3129 3625 4.046462 CCATGTTCACTGCTTTCAAACTG 58.954 43.478 0.00 0.00 0.00 3.16
3130 3626 4.440525 CCATGTTCACTGCTTTCAAACTGT 60.441 41.667 0.00 0.00 0.00 3.55
3131 3627 4.355543 TGTTCACTGCTTTCAAACTGTC 57.644 40.909 0.00 0.00 0.00 3.51
3132 3628 3.181511 TGTTCACTGCTTTCAAACTGTCG 60.182 43.478 0.00 0.00 0.00 4.35
3133 3629 1.330521 TCACTGCTTTCAAACTGTCGC 59.669 47.619 0.00 0.00 0.00 5.19
3134 3630 1.331756 CACTGCTTTCAAACTGTCGCT 59.668 47.619 0.00 0.00 0.00 4.93
3135 3631 2.017049 ACTGCTTTCAAACTGTCGCTT 58.983 42.857 0.00 0.00 0.00 4.68
3136 3632 2.423538 ACTGCTTTCAAACTGTCGCTTT 59.576 40.909 0.00 0.00 0.00 3.51
3137 3633 3.038710 CTGCTTTCAAACTGTCGCTTTC 58.961 45.455 0.00 0.00 0.00 2.62
3138 3634 2.421775 TGCTTTCAAACTGTCGCTTTCA 59.578 40.909 0.00 0.00 0.00 2.69
3139 3635 3.119673 TGCTTTCAAACTGTCGCTTTCAA 60.120 39.130 0.00 0.00 0.00 2.69
3140 3636 4.044426 GCTTTCAAACTGTCGCTTTCAAT 58.956 39.130 0.00 0.00 0.00 2.57
3141 3637 5.212194 GCTTTCAAACTGTCGCTTTCAATA 58.788 37.500 0.00 0.00 0.00 1.90
3142 3638 5.858581 GCTTTCAAACTGTCGCTTTCAATAT 59.141 36.000 0.00 0.00 0.00 1.28
3143 3639 7.021196 GCTTTCAAACTGTCGCTTTCAATATA 58.979 34.615 0.00 0.00 0.00 0.86
3144 3640 7.537306 GCTTTCAAACTGTCGCTTTCAATATAA 59.463 33.333 0.00 0.00 0.00 0.98
3145 3641 9.393249 CTTTCAAACTGTCGCTTTCAATATAAA 57.607 29.630 0.00 0.00 0.00 1.40
3146 3642 9.906660 TTTCAAACTGTCGCTTTCAATATAAAT 57.093 25.926 0.00 0.00 0.00 1.40
3147 3643 9.906660 TTCAAACTGTCGCTTTCAATATAAATT 57.093 25.926 0.00 0.00 0.00 1.82
3148 3644 9.340695 TCAAACTGTCGCTTTCAATATAAATTG 57.659 29.630 0.00 0.00 43.32 2.32
3149 3645 8.586273 CAAACTGTCGCTTTCAATATAAATTGG 58.414 33.333 0.00 0.00 42.40 3.16
3150 3646 7.391148 ACTGTCGCTTTCAATATAAATTGGT 57.609 32.000 0.00 0.00 42.40 3.67
3151 3647 8.500753 ACTGTCGCTTTCAATATAAATTGGTA 57.499 30.769 0.00 0.00 42.40 3.25
3152 3648 8.612619 ACTGTCGCTTTCAATATAAATTGGTAG 58.387 33.333 0.00 0.00 42.40 3.18
3153 3649 8.725405 TGTCGCTTTCAATATAAATTGGTAGA 57.275 30.769 0.00 0.00 42.40 2.59
3154 3650 8.609176 TGTCGCTTTCAATATAAATTGGTAGAC 58.391 33.333 0.00 3.53 42.40 2.59
3155 3651 8.827677 GTCGCTTTCAATATAAATTGGTAGACT 58.172 33.333 0.00 0.00 42.40 3.24
3161 3657 9.515226 TTCAATATAAATTGGTAGACTATGGGC 57.485 33.333 0.00 0.00 42.40 5.36
3162 3658 8.664992 TCAATATAAATTGGTAGACTATGGGCA 58.335 33.333 0.00 0.00 42.40 5.36
3163 3659 9.295825 CAATATAAATTGGTAGACTATGGGCAA 57.704 33.333 0.00 0.00 39.10 4.52
3164 3660 9.875708 AATATAAATTGGTAGACTATGGGCAAA 57.124 29.630 0.00 0.00 0.00 3.68
3166 3662 6.469782 AAATTGGTAGACTATGGGCAAATG 57.530 37.500 0.00 0.00 0.00 2.32
3167 3663 3.576078 TGGTAGACTATGGGCAAATGG 57.424 47.619 0.00 0.00 0.00 3.16
3168 3664 2.230660 GGTAGACTATGGGCAAATGGC 58.769 52.381 0.00 0.00 43.74 4.40
3184 3680 4.996788 AATGGCATTTGAAAGCTCTAGG 57.003 40.909 6.96 0.00 0.00 3.02
3185 3681 2.726821 TGGCATTTGAAAGCTCTAGGG 58.273 47.619 0.00 0.00 0.00 3.53
3186 3682 2.027385 GGCATTTGAAAGCTCTAGGGG 58.973 52.381 0.00 0.00 0.00 4.79
3187 3683 2.027385 GCATTTGAAAGCTCTAGGGGG 58.973 52.381 0.00 0.00 0.00 5.40
3204 3700 2.899303 GGGGGAATCAGGTCTTCAAA 57.101 50.000 0.00 0.00 0.00 2.69
3205 3701 3.169512 GGGGGAATCAGGTCTTCAAAA 57.830 47.619 0.00 0.00 0.00 2.44
3206 3702 3.713003 GGGGGAATCAGGTCTTCAAAAT 58.287 45.455 0.00 0.00 0.00 1.82
3207 3703 3.448660 GGGGGAATCAGGTCTTCAAAATG 59.551 47.826 0.00 0.00 0.00 2.32
3208 3704 4.089361 GGGGAATCAGGTCTTCAAAATGT 58.911 43.478 0.00 0.00 0.00 2.71
3209 3705 4.528206 GGGGAATCAGGTCTTCAAAATGTT 59.472 41.667 0.00 0.00 0.00 2.71
3210 3706 5.012046 GGGGAATCAGGTCTTCAAAATGTTT 59.988 40.000 0.00 0.00 0.00 2.83
3211 3707 6.464322 GGGGAATCAGGTCTTCAAAATGTTTT 60.464 38.462 0.00 0.00 0.00 2.43
3212 3708 6.992123 GGGAATCAGGTCTTCAAAATGTTTTT 59.008 34.615 0.00 0.00 0.00 1.94
3213 3709 7.041848 GGGAATCAGGTCTTCAAAATGTTTTTG 60.042 37.037 6.41 6.41 0.00 2.44
3214 3710 7.710475 GGAATCAGGTCTTCAAAATGTTTTTGA 59.290 33.333 10.50 10.50 36.71 2.69
3215 3711 8.652810 AATCAGGTCTTCAAAATGTTTTTGAG 57.347 30.769 13.33 9.34 39.30 3.02
3216 3712 7.169158 TCAGGTCTTCAAAATGTTTTTGAGT 57.831 32.000 13.33 0.00 39.30 3.41
3217 3713 7.610865 TCAGGTCTTCAAAATGTTTTTGAGTT 58.389 30.769 13.33 0.61 39.30 3.01
3218 3714 8.093927 TCAGGTCTTCAAAATGTTTTTGAGTTT 58.906 29.630 13.33 0.88 39.30 2.66
3219 3715 8.382875 CAGGTCTTCAAAATGTTTTTGAGTTTC 58.617 33.333 13.33 7.40 39.30 2.78
3220 3716 8.314021 AGGTCTTCAAAATGTTTTTGAGTTTCT 58.686 29.630 13.33 8.96 39.30 2.52
3221 3717 8.935844 GGTCTTCAAAATGTTTTTGAGTTTCTT 58.064 29.630 13.33 0.00 39.30 2.52
3222 3718 9.745323 GTCTTCAAAATGTTTTTGAGTTTCTTG 57.255 29.630 13.33 3.39 39.30 3.02
3223 3719 8.934825 TCTTCAAAATGTTTTTGAGTTTCTTGG 58.065 29.630 13.33 2.43 39.30 3.61
3224 3720 8.839310 TTCAAAATGTTTTTGAGTTTCTTGGA 57.161 26.923 13.33 0.00 39.30 3.53
3225 3721 8.250538 TCAAAATGTTTTTGAGTTTCTTGGAC 57.749 30.769 10.50 0.00 33.90 4.02
3226 3722 7.875041 TCAAAATGTTTTTGAGTTTCTTGGACA 59.125 29.630 10.50 0.00 33.90 4.02
3227 3723 8.502387 CAAAATGTTTTTGAGTTTCTTGGACAA 58.498 29.630 6.85 0.00 0.00 3.18
3228 3724 7.595311 AATGTTTTTGAGTTTCTTGGACAAC 57.405 32.000 0.00 0.00 0.00 3.32
3229 3725 5.474825 TGTTTTTGAGTTTCTTGGACAACC 58.525 37.500 0.00 0.00 0.00 3.77
3230 3726 5.245075 TGTTTTTGAGTTTCTTGGACAACCT 59.755 36.000 0.00 0.00 37.04 3.50
3231 3727 5.993748 TTTTGAGTTTCTTGGACAACCTT 57.006 34.783 0.00 0.00 37.04 3.50
3232 3728 5.993748 TTTGAGTTTCTTGGACAACCTTT 57.006 34.783 0.00 0.00 37.04 3.11
3233 3729 5.993748 TTGAGTTTCTTGGACAACCTTTT 57.006 34.783 0.00 0.00 37.04 2.27
3234 3730 5.576447 TGAGTTTCTTGGACAACCTTTTC 57.424 39.130 0.00 0.00 37.04 2.29
3235 3731 5.261216 TGAGTTTCTTGGACAACCTTTTCT 58.739 37.500 0.00 0.00 37.04 2.52
3236 3732 5.714806 TGAGTTTCTTGGACAACCTTTTCTT 59.285 36.000 0.00 0.00 37.04 2.52
3237 3733 6.210584 TGAGTTTCTTGGACAACCTTTTCTTT 59.789 34.615 0.00 0.00 37.04 2.52
3238 3734 7.004555 AGTTTCTTGGACAACCTTTTCTTTT 57.995 32.000 0.00 0.00 37.04 2.27
3239 3735 7.450074 AGTTTCTTGGACAACCTTTTCTTTTT 58.550 30.769 0.00 0.00 37.04 1.94
3270 3766 2.012673 CACCTCAAATGTGCTCCTAGC 58.987 52.381 0.00 0.00 42.82 3.42
3281 3777 2.169832 GCTCCTAGCACACTCAAACA 57.830 50.000 0.00 0.00 41.89 2.83
3282 3778 2.704572 GCTCCTAGCACACTCAAACAT 58.295 47.619 0.00 0.00 41.89 2.71
3283 3779 2.675348 GCTCCTAGCACACTCAAACATC 59.325 50.000 0.00 0.00 41.89 3.06
3284 3780 3.618507 GCTCCTAGCACACTCAAACATCT 60.619 47.826 0.00 0.00 41.89 2.90
3285 3781 4.573900 CTCCTAGCACACTCAAACATCTT 58.426 43.478 0.00 0.00 0.00 2.40
3286 3782 4.318332 TCCTAGCACACTCAAACATCTTG 58.682 43.478 0.00 0.00 0.00 3.02
3287 3783 3.438087 CCTAGCACACTCAAACATCTTGG 59.562 47.826 0.00 0.00 0.00 3.61
3288 3784 3.213206 AGCACACTCAAACATCTTGGA 57.787 42.857 0.00 0.00 0.00 3.53
3289 3785 3.759581 AGCACACTCAAACATCTTGGAT 58.240 40.909 0.00 0.00 0.00 3.41
3290 3786 3.504906 AGCACACTCAAACATCTTGGATG 59.495 43.478 6.04 6.04 0.00 3.51
3291 3787 3.829948 CACACTCAAACATCTTGGATGC 58.170 45.455 7.35 0.00 0.00 3.91
3292 3788 3.504906 CACACTCAAACATCTTGGATGCT 59.495 43.478 7.35 0.00 0.00 3.79
3293 3789 4.696877 CACACTCAAACATCTTGGATGCTA 59.303 41.667 7.35 0.00 0.00 3.49
3294 3790 5.356190 CACACTCAAACATCTTGGATGCTAT 59.644 40.000 7.35 0.00 0.00 2.97
3295 3791 5.948162 ACACTCAAACATCTTGGATGCTATT 59.052 36.000 7.35 0.00 0.00 1.73
3296 3792 6.435277 ACACTCAAACATCTTGGATGCTATTT 59.565 34.615 7.35 0.00 0.00 1.40
3297 3793 7.039504 ACACTCAAACATCTTGGATGCTATTTT 60.040 33.333 7.35 0.00 0.00 1.82
3298 3794 7.816031 CACTCAAACATCTTGGATGCTATTTTT 59.184 33.333 7.35 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.772025 AGGTGCAAATGCTAGTACTCTCT 59.228 43.478 0.00 0.00 42.66 3.10
3 4 3.118592 GGAGGTGCAAATGCTAGTACTCT 60.119 47.826 0.00 0.00 42.66 3.24
4 5 3.198872 GGAGGTGCAAATGCTAGTACTC 58.801 50.000 0.00 6.83 42.66 2.59
5 6 2.571653 TGGAGGTGCAAATGCTAGTACT 59.428 45.455 6.97 0.00 42.66 2.73
6 7 2.939103 CTGGAGGTGCAAATGCTAGTAC 59.061 50.000 6.97 0.00 42.66 2.73
7 8 2.571653 ACTGGAGGTGCAAATGCTAGTA 59.428 45.455 6.97 0.00 42.66 1.82
8 9 1.352352 ACTGGAGGTGCAAATGCTAGT 59.648 47.619 6.97 0.00 42.66 2.57
9 10 2.119801 ACTGGAGGTGCAAATGCTAG 57.880 50.000 6.97 0.00 42.66 3.42
10 11 2.304470 TGTACTGGAGGTGCAAATGCTA 59.696 45.455 6.97 0.00 42.66 3.49
11 12 1.073763 TGTACTGGAGGTGCAAATGCT 59.926 47.619 6.97 0.00 42.66 3.79
12 13 1.200020 GTGTACTGGAGGTGCAAATGC 59.800 52.381 0.00 0.00 41.85 3.56
13 14 2.485426 CAGTGTACTGGAGGTGCAAATG 59.515 50.000 4.10 0.00 41.85 2.32
283 315 1.536709 GGACTTGGTACGTCGTGTTGT 60.537 52.381 8.47 0.00 32.24 3.32
291 323 1.951602 GCCTTTTTGGACTTGGTACGT 59.048 47.619 0.00 0.00 38.35 3.57
310 344 2.086054 ATGGTGTCTTTCTGTCGAGC 57.914 50.000 0.00 0.00 0.00 5.03
324 358 3.218453 TGACCCACTGTACAAAATGGTG 58.782 45.455 15.71 11.04 0.00 4.17
342 376 1.787847 CGTTTCGCCAGGTCATGAC 59.212 57.895 17.91 17.91 0.00 3.06
382 416 2.249309 CACGGACAGCGTTTGCAG 59.751 61.111 0.00 0.00 46.23 4.41
516 559 3.461773 ATCTCCGCTGGGTGGACG 61.462 66.667 0.00 0.00 37.29 4.79
517 560 2.187946 CATCTCCGCTGGGTGGAC 59.812 66.667 0.00 0.00 37.29 4.02
518 561 2.284625 ACATCTCCGCTGGGTGGA 60.285 61.111 0.00 0.00 40.17 4.02
519 562 2.187946 GACATCTCCGCTGGGTGG 59.812 66.667 0.00 0.00 33.83 4.61
520 563 2.184020 TTGGACATCTCCGCTGGGTG 62.184 60.000 0.00 0.00 39.88 4.61
521 564 1.903877 CTTGGACATCTCCGCTGGGT 61.904 60.000 0.00 0.00 39.88 4.51
522 565 1.153289 CTTGGACATCTCCGCTGGG 60.153 63.158 0.00 0.00 39.88 4.45
795 850 1.613630 GAGTGGGAGGAGGGAAGCA 60.614 63.158 0.00 0.00 0.00 3.91
806 861 5.091552 GGATATATAGGTTGTGGAGTGGGA 58.908 45.833 0.00 0.00 0.00 4.37
831 886 1.681327 GGTAGTGCGGTGGAGGAGA 60.681 63.158 0.00 0.00 0.00 3.71
836 891 2.682494 GGGAGGTAGTGCGGTGGA 60.682 66.667 0.00 0.00 0.00 4.02
839 894 4.326227 TGGGGGAGGTAGTGCGGT 62.326 66.667 0.00 0.00 0.00 5.68
865 920 0.036306 TGGAACGGAGGGAGAAAAGC 59.964 55.000 0.00 0.00 0.00 3.51
868 923 1.430992 AGTTGGAACGGAGGGAGAAA 58.569 50.000 0.00 0.00 0.00 2.52
870 925 0.974383 GAAGTTGGAACGGAGGGAGA 59.026 55.000 0.00 0.00 0.00 3.71
956 1046 2.569404 GTTGGGACAGAGAAGAGGTGAT 59.431 50.000 0.00 0.00 42.39 3.06
957 1047 1.971357 GTTGGGACAGAGAAGAGGTGA 59.029 52.381 0.00 0.00 42.39 4.02
959 1049 2.407340 AGTTGGGACAGAGAAGAGGT 57.593 50.000 0.00 0.00 42.39 3.85
992 1082 1.602237 GGCAGAACCATCTTCCGGA 59.398 57.895 0.00 0.00 38.86 5.14
1588 1717 0.980231 AGAGCCGCCAAGATCTTCCT 60.980 55.000 4.57 0.00 0.00 3.36
1914 2055 4.840005 GGCACCGCACCTAGCTCC 62.840 72.222 0.00 0.00 42.61 4.70
2058 2201 4.681781 CGGAATATCTTCTTGACCAGCACT 60.682 45.833 0.00 0.00 0.00 4.40
2076 2219 1.809619 CATGTCGGACACGCGGAAT 60.810 57.895 13.92 0.00 40.69 3.01
2341 2822 2.332063 AAATCCAGCATCTACACCGG 57.668 50.000 0.00 0.00 0.00 5.28
2380 2861 6.883744 AGCTCCCAAAACAATCTAAAACAAA 58.116 32.000 0.00 0.00 0.00 2.83
2383 2864 7.448748 TCTAGCTCCCAAAACAATCTAAAAC 57.551 36.000 0.00 0.00 0.00 2.43
2384 2865 8.650143 AATCTAGCTCCCAAAACAATCTAAAA 57.350 30.769 0.00 0.00 0.00 1.52
2425 2906 5.958380 TCTAGTCATCCTGGAGTATGTTTGT 59.042 40.000 1.52 0.00 0.00 2.83
2426 2907 6.471233 TCTAGTCATCCTGGAGTATGTTTG 57.529 41.667 1.52 0.00 0.00 2.93
2427 2908 7.682787 AATCTAGTCATCCTGGAGTATGTTT 57.317 36.000 1.52 0.00 33.75 2.83
2428 2909 7.682787 AAATCTAGTCATCCTGGAGTATGTT 57.317 36.000 1.52 0.00 33.75 2.71
2493 2980 5.292765 TCAGTTCTCTTCTGTGTTGATCAC 58.707 41.667 0.00 0.00 46.31 3.06
2556 3050 8.176365 TCGTAAATTACACGGAATAACATTTGG 58.824 33.333 11.33 0.00 39.82 3.28
2561 3055 9.544314 CAAAATCGTAAATTACACGGAATAACA 57.456 29.630 11.33 0.00 39.82 2.41
2594 3088 1.379642 GCACTGCTGTAATGGGAGGC 61.380 60.000 0.00 0.00 0.00 4.70
2629 3123 6.817765 TTGTAATCTCATGTTTCCCAACTC 57.182 37.500 0.00 0.00 33.58 3.01
2630 3124 7.595819 TTTTGTAATCTCATGTTTCCCAACT 57.404 32.000 0.00 0.00 33.58 3.16
2657 3151 8.351495 TGCTCAGTTTGATGTTTATTTGTTTC 57.649 30.769 0.00 0.00 0.00 2.78
2665 3159 6.939730 TGGATTACTGCTCAGTTTGATGTTTA 59.060 34.615 7.92 0.00 42.54 2.01
2682 3176 2.834549 CTGGGCCGATCTATGGATTACT 59.165 50.000 0.00 0.00 31.46 2.24
2763 3258 5.007921 AGTGCCAAAACATTTCAGATTTTGC 59.992 36.000 3.68 0.00 40.43 3.68
2764 3259 6.258287 TCAGTGCCAAAACATTTCAGATTTTG 59.742 34.615 0.00 0.00 41.10 2.44
2765 3260 6.347696 TCAGTGCCAAAACATTTCAGATTTT 58.652 32.000 0.00 0.00 0.00 1.82
2793 3288 2.610479 GGACACACTCGAGCATCTTTCA 60.610 50.000 13.61 0.00 0.00 2.69
2794 3289 1.996191 GGACACACTCGAGCATCTTTC 59.004 52.381 13.61 1.60 0.00 2.62
2795 3290 1.670087 CGGACACACTCGAGCATCTTT 60.670 52.381 13.61 0.00 0.00 2.52
2796 3291 0.109086 CGGACACACTCGAGCATCTT 60.109 55.000 13.61 0.00 0.00 2.40
2797 3292 1.508545 CGGACACACTCGAGCATCT 59.491 57.895 13.61 0.00 0.00 2.90
2798 3293 1.517257 CCGGACACACTCGAGCATC 60.517 63.158 13.61 4.82 0.00 3.91
2805 3300 2.430921 CACGCTCCGGACACACTC 60.431 66.667 0.00 0.00 0.00 3.51
2810 3305 1.169661 AATTTTGCACGCTCCGGACA 61.170 50.000 0.00 0.00 0.00 4.02
2850 3346 9.997482 GAGTAATACAAGAATTATTCCGCAAAA 57.003 29.630 0.78 0.00 0.00 2.44
2851 3347 8.332464 CGAGTAATACAAGAATTATTCCGCAAA 58.668 33.333 0.78 0.00 29.03 3.68
2852 3348 7.707464 TCGAGTAATACAAGAATTATTCCGCAA 59.293 33.333 0.78 0.00 29.03 4.85
2853 3349 7.204604 TCGAGTAATACAAGAATTATTCCGCA 58.795 34.615 0.78 0.00 29.03 5.69
2854 3350 7.633361 TCGAGTAATACAAGAATTATTCCGC 57.367 36.000 0.78 0.00 29.03 5.54
2855 3351 8.576281 CGATCGAGTAATACAAGAATTATTCCG 58.424 37.037 10.26 0.00 29.03 4.30
2856 3352 9.622004 TCGATCGAGTAATACAAGAATTATTCC 57.378 33.333 15.15 0.00 29.03 3.01
2860 3356 9.791820 TGTTTCGATCGAGTAATACAAGAATTA 57.208 29.630 18.54 0.00 0.00 1.40
2861 3357 8.592998 GTGTTTCGATCGAGTAATACAAGAATT 58.407 33.333 18.54 0.00 0.00 2.17
2862 3358 7.758076 TGTGTTTCGATCGAGTAATACAAGAAT 59.242 33.333 22.11 0.00 0.00 2.40
2863 3359 7.085746 TGTGTTTCGATCGAGTAATACAAGAA 58.914 34.615 22.11 8.15 0.00 2.52
2864 3360 6.614160 TGTGTTTCGATCGAGTAATACAAGA 58.386 36.000 22.11 8.81 0.00 3.02
2865 3361 6.527023 ACTGTGTTTCGATCGAGTAATACAAG 59.473 38.462 23.50 19.97 0.00 3.16
2866 3362 6.384224 ACTGTGTTTCGATCGAGTAATACAA 58.616 36.000 23.50 11.36 0.00 2.41
2867 3363 5.946298 ACTGTGTTTCGATCGAGTAATACA 58.054 37.500 22.57 22.57 0.00 2.29
2868 3364 6.866179 AACTGTGTTTCGATCGAGTAATAC 57.134 37.500 18.54 17.92 0.00 1.89
2869 3365 7.529158 TGTAACTGTGTTTCGATCGAGTAATA 58.471 34.615 18.54 6.40 0.00 0.98
2870 3366 6.384224 TGTAACTGTGTTTCGATCGAGTAAT 58.616 36.000 18.54 0.60 0.00 1.89
2871 3367 5.761003 TGTAACTGTGTTTCGATCGAGTAA 58.239 37.500 18.54 8.07 0.00 2.24
2872 3368 5.049198 ACTGTAACTGTGTTTCGATCGAGTA 60.049 40.000 18.54 7.89 0.00 2.59
2873 3369 4.227538 CTGTAACTGTGTTTCGATCGAGT 58.772 43.478 18.54 8.74 0.00 4.18
2874 3370 4.227538 ACTGTAACTGTGTTTCGATCGAG 58.772 43.478 18.54 8.06 0.00 4.04
2875 3371 4.224433 GACTGTAACTGTGTTTCGATCGA 58.776 43.478 15.15 15.15 0.00 3.59
2876 3372 3.978855 TGACTGTAACTGTGTTTCGATCG 59.021 43.478 9.36 9.36 0.00 3.69
2877 3373 4.143597 CGTGACTGTAACTGTGTTTCGATC 60.144 45.833 0.00 0.00 0.00 3.69
2878 3374 3.734231 CGTGACTGTAACTGTGTTTCGAT 59.266 43.478 0.00 0.00 0.00 3.59
2879 3375 3.110358 CGTGACTGTAACTGTGTTTCGA 58.890 45.455 0.00 0.00 0.00 3.71
2880 3376 2.347292 GCGTGACTGTAACTGTGTTTCG 60.347 50.000 0.00 0.00 0.00 3.46
2881 3377 2.864343 AGCGTGACTGTAACTGTGTTTC 59.136 45.455 0.00 0.00 0.00 2.78
2882 3378 2.901249 AGCGTGACTGTAACTGTGTTT 58.099 42.857 0.00 0.00 0.00 2.83
2883 3379 2.596904 AGCGTGACTGTAACTGTGTT 57.403 45.000 0.00 0.00 0.00 3.32
2884 3380 2.596904 AAGCGTGACTGTAACTGTGT 57.403 45.000 0.00 0.00 0.00 3.72
2885 3381 3.799963 TGTTAAGCGTGACTGTAACTGTG 59.200 43.478 0.00 0.00 0.00 3.66
2886 3382 4.049546 TGTTAAGCGTGACTGTAACTGT 57.950 40.909 0.00 0.00 0.00 3.55
2887 3383 4.605354 CGTTGTTAAGCGTGACTGTAACTG 60.605 45.833 0.00 0.00 0.00 3.16
2888 3384 3.488310 CGTTGTTAAGCGTGACTGTAACT 59.512 43.478 0.00 0.00 0.00 2.24
2889 3385 3.243643 ACGTTGTTAAGCGTGACTGTAAC 59.756 43.478 0.00 0.00 40.03 2.50
2890 3386 3.446799 ACGTTGTTAAGCGTGACTGTAA 58.553 40.909 0.00 0.00 40.03 2.41
2891 3387 3.044986 GACGTTGTTAAGCGTGACTGTA 58.955 45.455 4.69 0.00 41.70 2.74
2892 3388 1.856597 GACGTTGTTAAGCGTGACTGT 59.143 47.619 4.69 0.00 41.70 3.55
2893 3389 1.191647 GGACGTTGTTAAGCGTGACTG 59.808 52.381 4.69 0.00 41.70 3.51
2894 3390 1.202440 TGGACGTTGTTAAGCGTGACT 60.202 47.619 4.69 0.00 41.70 3.41
2895 3391 1.210870 TGGACGTTGTTAAGCGTGAC 58.789 50.000 4.69 0.00 41.70 3.67
2896 3392 1.937278 TTGGACGTTGTTAAGCGTGA 58.063 45.000 4.69 0.00 41.70 4.35
2897 3393 2.741122 TTTGGACGTTGTTAAGCGTG 57.259 45.000 4.69 0.00 41.70 5.34
2898 3394 2.537328 CGTTTTGGACGTTGTTAAGCGT 60.537 45.455 0.00 0.17 46.49 5.07
2899 3395 2.031232 CGTTTTGGACGTTGTTAAGCG 58.969 47.619 0.00 0.00 46.49 4.68
2910 3406 0.521735 GACCAGATGCCGTTTTGGAC 59.478 55.000 0.00 0.00 42.00 4.02
2911 3407 0.608035 GGACCAGATGCCGTTTTGGA 60.608 55.000 0.00 0.00 42.00 3.53
2912 3408 0.609131 AGGACCAGATGCCGTTTTGG 60.609 55.000 0.00 0.00 42.50 3.28
2913 3409 0.523072 CAGGACCAGATGCCGTTTTG 59.477 55.000 0.00 0.00 0.00 2.44
2914 3410 0.400213 TCAGGACCAGATGCCGTTTT 59.600 50.000 0.00 0.00 0.00 2.43
2915 3411 0.321653 GTCAGGACCAGATGCCGTTT 60.322 55.000 0.00 0.00 0.00 3.60
2916 3412 1.296715 GTCAGGACCAGATGCCGTT 59.703 57.895 0.00 0.00 0.00 4.44
2917 3413 2.982130 GTCAGGACCAGATGCCGT 59.018 61.111 0.00 0.00 0.00 5.68
2927 3423 0.618458 TGTATGGCTTGGGTCAGGAC 59.382 55.000 0.00 0.00 0.00 3.85
2928 3424 0.911769 CTGTATGGCTTGGGTCAGGA 59.088 55.000 0.00 0.00 0.00 3.86
2929 3425 0.749454 GCTGTATGGCTTGGGTCAGG 60.749 60.000 0.00 0.00 0.00 3.86
2930 3426 0.035152 TGCTGTATGGCTTGGGTCAG 60.035 55.000 0.00 0.00 0.00 3.51
2931 3427 0.403655 TTGCTGTATGGCTTGGGTCA 59.596 50.000 0.00 0.00 0.00 4.02
2932 3428 1.767759 ATTGCTGTATGGCTTGGGTC 58.232 50.000 0.00 0.00 0.00 4.46
2933 3429 2.102578 GAATTGCTGTATGGCTTGGGT 58.897 47.619 0.00 0.00 0.00 4.51
2934 3430 1.066002 CGAATTGCTGTATGGCTTGGG 59.934 52.381 0.00 0.00 0.00 4.12
2935 3431 1.066002 CCGAATTGCTGTATGGCTTGG 59.934 52.381 0.00 0.00 0.00 3.61
2936 3432 1.534595 GCCGAATTGCTGTATGGCTTG 60.535 52.381 3.14 0.00 39.38 4.01
2937 3433 0.740737 GCCGAATTGCTGTATGGCTT 59.259 50.000 3.14 0.00 39.38 4.35
2938 3434 1.103398 GGCCGAATTGCTGTATGGCT 61.103 55.000 9.17 0.00 42.11 4.75
2939 3435 1.103398 AGGCCGAATTGCTGTATGGC 61.103 55.000 0.00 1.88 41.72 4.40
2940 3436 1.066002 CAAGGCCGAATTGCTGTATGG 59.934 52.381 0.00 0.00 0.00 2.74
2941 3437 2.016318 TCAAGGCCGAATTGCTGTATG 58.984 47.619 0.00 0.00 0.00 2.39
2942 3438 2.292267 CTCAAGGCCGAATTGCTGTAT 58.708 47.619 0.00 0.00 0.00 2.29
2943 3439 1.003118 ACTCAAGGCCGAATTGCTGTA 59.997 47.619 0.00 0.00 0.00 2.74
2944 3440 0.250901 ACTCAAGGCCGAATTGCTGT 60.251 50.000 0.00 0.00 0.00 4.40
2945 3441 0.449388 GACTCAAGGCCGAATTGCTG 59.551 55.000 0.00 0.00 0.00 4.41
2946 3442 0.678048 GGACTCAAGGCCGAATTGCT 60.678 55.000 0.00 0.00 0.00 3.91
2947 3443 0.678048 AGGACTCAAGGCCGAATTGC 60.678 55.000 0.00 0.00 0.00 3.56
2948 3444 1.373570 GAGGACTCAAGGCCGAATTG 58.626 55.000 0.00 0.00 0.00 2.32
2949 3445 0.253327 GGAGGACTCAAGGCCGAATT 59.747 55.000 0.00 0.00 0.00 2.17
2950 3446 1.627297 GGGAGGACTCAAGGCCGAAT 61.627 60.000 0.00 0.00 0.00 3.34
2951 3447 2.291043 GGGAGGACTCAAGGCCGAA 61.291 63.158 0.00 0.00 0.00 4.30
2952 3448 2.683933 GGGAGGACTCAAGGCCGA 60.684 66.667 0.00 0.00 0.00 5.54
2953 3449 1.048724 TATGGGAGGACTCAAGGCCG 61.049 60.000 0.00 0.00 0.00 6.13
2954 3450 0.761802 CTATGGGAGGACTCAAGGCC 59.238 60.000 0.00 0.00 0.00 5.19
2955 3451 1.501582 ACTATGGGAGGACTCAAGGC 58.498 55.000 1.32 0.00 0.00 4.35
2956 3452 2.171448 CCAACTATGGGAGGACTCAAGG 59.829 54.545 1.32 0.00 43.51 3.61
2957 3453 3.550437 CCAACTATGGGAGGACTCAAG 57.450 52.381 1.32 0.00 43.51 3.02
2969 3465 4.789012 AGTCATGTTTTGGCCAACTATG 57.211 40.909 20.35 21.04 0.00 2.23
2970 3466 5.815581 TCTAGTCATGTTTTGGCCAACTAT 58.184 37.500 20.35 10.07 0.00 2.12
2971 3467 5.235850 TCTAGTCATGTTTTGGCCAACTA 57.764 39.130 20.35 14.10 0.00 2.24
2972 3468 4.098914 TCTAGTCATGTTTTGGCCAACT 57.901 40.909 20.35 13.66 0.00 3.16
2973 3469 4.846779 TTCTAGTCATGTTTTGGCCAAC 57.153 40.909 20.35 9.52 0.00 3.77
2974 3470 7.716799 ATAATTCTAGTCATGTTTTGGCCAA 57.283 32.000 16.05 16.05 0.00 4.52
2975 3471 7.716799 AATAATTCTAGTCATGTTTTGGCCA 57.283 32.000 0.00 0.00 0.00 5.36
2976 3472 8.682710 TGTAATAATTCTAGTCATGTTTTGGCC 58.317 33.333 0.00 0.00 0.00 5.36
2986 3482 9.961265 CCATCGTAGTTGTAATAATTCTAGTCA 57.039 33.333 0.00 0.00 0.00 3.41
3000 3496 9.074576 TGTATTACTCATATCCATCGTAGTTGT 57.925 33.333 0.00 0.00 0.00 3.32
3001 3497 9.908152 TTGTATTACTCATATCCATCGTAGTTG 57.092 33.333 0.00 0.00 0.00 3.16
3003 3499 9.516546 TCTTGTATTACTCATATCCATCGTAGT 57.483 33.333 0.00 0.00 0.00 2.73
3006 3502 8.861086 AGTTCTTGTATTACTCATATCCATCGT 58.139 33.333 0.00 0.00 0.00 3.73
3010 3506 9.128404 ACGTAGTTCTTGTATTACTCATATCCA 57.872 33.333 0.00 0.00 37.78 3.41
3031 3527 9.327529 GATTAAAGATAGTATGTCCGAACGTAG 57.672 37.037 0.00 0.00 0.00 3.51
3032 3528 9.060347 AGATTAAAGATAGTATGTCCGAACGTA 57.940 33.333 0.00 0.00 0.00 3.57
3033 3529 7.938715 AGATTAAAGATAGTATGTCCGAACGT 58.061 34.615 0.00 0.00 0.00 3.99
3034 3530 8.291032 AGAGATTAAAGATAGTATGTCCGAACG 58.709 37.037 0.00 0.00 0.00 3.95
3035 3531 9.615295 GAGAGATTAAAGATAGTATGTCCGAAC 57.385 37.037 0.00 0.00 0.00 3.95
3036 3532 9.575868 AGAGAGATTAAAGATAGTATGTCCGAA 57.424 33.333 0.00 0.00 0.00 4.30
3080 3576 9.958180 TGAAAAGTGGAGATACAAATAGATCAA 57.042 29.630 0.00 0.00 0.00 2.57
3081 3577 9.383519 GTGAAAAGTGGAGATACAAATAGATCA 57.616 33.333 0.00 0.00 0.00 2.92
3082 3578 8.831550 GGTGAAAAGTGGAGATACAAATAGATC 58.168 37.037 0.00 0.00 0.00 2.75
3083 3579 8.328758 TGGTGAAAAGTGGAGATACAAATAGAT 58.671 33.333 0.00 0.00 0.00 1.98
3084 3580 7.685481 TGGTGAAAAGTGGAGATACAAATAGA 58.315 34.615 0.00 0.00 0.00 1.98
3085 3581 7.921786 TGGTGAAAAGTGGAGATACAAATAG 57.078 36.000 0.00 0.00 0.00 1.73
3086 3582 7.888021 ACATGGTGAAAAGTGGAGATACAAATA 59.112 33.333 0.00 0.00 0.00 1.40
3087 3583 6.721208 ACATGGTGAAAAGTGGAGATACAAAT 59.279 34.615 0.00 0.00 0.00 2.32
3088 3584 6.068010 ACATGGTGAAAAGTGGAGATACAAA 58.932 36.000 0.00 0.00 0.00 2.83
3089 3585 5.630121 ACATGGTGAAAAGTGGAGATACAA 58.370 37.500 0.00 0.00 0.00 2.41
3090 3586 5.241403 ACATGGTGAAAAGTGGAGATACA 57.759 39.130 0.00 0.00 0.00 2.29
3091 3587 5.705441 TGAACATGGTGAAAAGTGGAGATAC 59.295 40.000 0.00 0.00 0.00 2.24
3092 3588 5.705441 GTGAACATGGTGAAAAGTGGAGATA 59.295 40.000 0.00 0.00 0.00 1.98
3093 3589 4.520492 GTGAACATGGTGAAAAGTGGAGAT 59.480 41.667 0.00 0.00 0.00 2.75
3094 3590 3.882888 GTGAACATGGTGAAAAGTGGAGA 59.117 43.478 0.00 0.00 0.00 3.71
3095 3591 3.885297 AGTGAACATGGTGAAAAGTGGAG 59.115 43.478 0.00 0.00 0.00 3.86
3096 3592 3.631686 CAGTGAACATGGTGAAAAGTGGA 59.368 43.478 0.00 0.00 0.00 4.02
3097 3593 3.796504 GCAGTGAACATGGTGAAAAGTGG 60.797 47.826 0.00 0.00 0.00 4.00
3098 3594 3.067180 AGCAGTGAACATGGTGAAAAGTG 59.933 43.478 0.00 0.00 0.00 3.16
3099 3595 3.290710 AGCAGTGAACATGGTGAAAAGT 58.709 40.909 0.00 0.00 0.00 2.66
3100 3596 3.996150 AGCAGTGAACATGGTGAAAAG 57.004 42.857 0.00 0.00 0.00 2.27
3101 3597 4.159321 TGAAAGCAGTGAACATGGTGAAAA 59.841 37.500 0.00 0.00 0.00 2.29
3102 3598 3.698539 TGAAAGCAGTGAACATGGTGAAA 59.301 39.130 0.00 0.00 0.00 2.69
3103 3599 3.286353 TGAAAGCAGTGAACATGGTGAA 58.714 40.909 0.00 0.00 0.00 3.18
3104 3600 2.929641 TGAAAGCAGTGAACATGGTGA 58.070 42.857 0.00 0.00 0.00 4.02
3105 3601 3.713858 TTGAAAGCAGTGAACATGGTG 57.286 42.857 0.00 0.00 0.00 4.17
3106 3602 3.701040 AGTTTGAAAGCAGTGAACATGGT 59.299 39.130 0.00 0.00 0.00 3.55
3107 3603 4.046462 CAGTTTGAAAGCAGTGAACATGG 58.954 43.478 0.00 0.00 0.00 3.66
3108 3604 4.675510 ACAGTTTGAAAGCAGTGAACATG 58.324 39.130 0.00 0.00 0.00 3.21
3109 3605 4.496341 CGACAGTTTGAAAGCAGTGAACAT 60.496 41.667 0.00 0.00 0.00 2.71
3110 3606 3.181511 CGACAGTTTGAAAGCAGTGAACA 60.182 43.478 0.00 0.00 0.00 3.18
3111 3607 3.354397 CGACAGTTTGAAAGCAGTGAAC 58.646 45.455 0.00 0.00 0.00 3.18
3112 3608 2.223249 GCGACAGTTTGAAAGCAGTGAA 60.223 45.455 0.00 0.00 0.00 3.18
3113 3609 1.330521 GCGACAGTTTGAAAGCAGTGA 59.669 47.619 0.00 0.00 0.00 3.41
3114 3610 1.331756 AGCGACAGTTTGAAAGCAGTG 59.668 47.619 0.00 0.00 0.00 3.66
3115 3611 1.668419 AGCGACAGTTTGAAAGCAGT 58.332 45.000 0.00 0.00 0.00 4.40
3116 3612 2.763249 AAGCGACAGTTTGAAAGCAG 57.237 45.000 0.00 0.00 0.00 4.24
3117 3613 2.421775 TGAAAGCGACAGTTTGAAAGCA 59.578 40.909 0.00 0.00 0.00 3.91
3118 3614 3.065019 TGAAAGCGACAGTTTGAAAGC 57.935 42.857 0.00 0.00 0.00 3.51
3119 3615 8.948853 TTATATTGAAAGCGACAGTTTGAAAG 57.051 30.769 0.00 0.00 0.00 2.62
3120 3616 9.906660 ATTTATATTGAAAGCGACAGTTTGAAA 57.093 25.926 0.00 0.00 0.00 2.69
3121 3617 9.906660 AATTTATATTGAAAGCGACAGTTTGAA 57.093 25.926 0.00 0.00 0.00 2.69
3122 3618 9.340695 CAATTTATATTGAAAGCGACAGTTTGA 57.659 29.630 0.00 0.00 43.12 2.69
3123 3619 8.586273 CCAATTTATATTGAAAGCGACAGTTTG 58.414 33.333 7.40 0.00 43.12 2.93
3124 3620 8.303876 ACCAATTTATATTGAAAGCGACAGTTT 58.696 29.630 7.40 0.00 43.12 2.66
3125 3621 7.826690 ACCAATTTATATTGAAAGCGACAGTT 58.173 30.769 7.40 0.00 43.12 3.16
3126 3622 7.391148 ACCAATTTATATTGAAAGCGACAGT 57.609 32.000 7.40 0.00 43.12 3.55
3127 3623 8.826710 TCTACCAATTTATATTGAAAGCGACAG 58.173 33.333 7.40 0.00 43.12 3.51
3128 3624 8.609176 GTCTACCAATTTATATTGAAAGCGACA 58.391 33.333 7.40 0.00 43.12 4.35
3129 3625 8.827677 AGTCTACCAATTTATATTGAAAGCGAC 58.172 33.333 7.40 6.58 43.12 5.19
3130 3626 8.958119 AGTCTACCAATTTATATTGAAAGCGA 57.042 30.769 7.40 0.00 43.12 4.93
3135 3631 9.515226 GCCCATAGTCTACCAATTTATATTGAA 57.485 33.333 7.40 0.00 43.12 2.69
3136 3632 8.664992 TGCCCATAGTCTACCAATTTATATTGA 58.335 33.333 7.40 0.00 43.12 2.57
3137 3633 8.862325 TGCCCATAGTCTACCAATTTATATTG 57.138 34.615 0.00 0.00 40.70 1.90
3138 3634 9.875708 TTTGCCCATAGTCTACCAATTTATATT 57.124 29.630 0.00 0.00 0.00 1.28
3140 3636 9.295825 CATTTGCCCATAGTCTACCAATTTATA 57.704 33.333 0.00 0.00 0.00 0.98
3141 3637 7.233348 CCATTTGCCCATAGTCTACCAATTTAT 59.767 37.037 0.00 0.00 0.00 1.40
3142 3638 6.549364 CCATTTGCCCATAGTCTACCAATTTA 59.451 38.462 0.00 0.00 0.00 1.40
3143 3639 5.363580 CCATTTGCCCATAGTCTACCAATTT 59.636 40.000 0.00 0.00 0.00 1.82
3144 3640 4.895297 CCATTTGCCCATAGTCTACCAATT 59.105 41.667 0.00 0.00 0.00 2.32
3145 3641 4.473444 CCATTTGCCCATAGTCTACCAAT 58.527 43.478 0.00 0.00 0.00 3.16
3146 3642 3.897239 CCATTTGCCCATAGTCTACCAA 58.103 45.455 0.00 0.00 0.00 3.67
3147 3643 2.422803 GCCATTTGCCCATAGTCTACCA 60.423 50.000 0.00 0.00 0.00 3.25
3148 3644 2.230660 GCCATTTGCCCATAGTCTACC 58.769 52.381 0.00 0.00 0.00 3.18
3149 3645 2.930950 TGCCATTTGCCCATAGTCTAC 58.069 47.619 0.00 0.00 40.16 2.59
3150 3646 3.882102 ATGCCATTTGCCCATAGTCTA 57.118 42.857 0.00 0.00 40.16 2.59
3151 3647 2.761786 ATGCCATTTGCCCATAGTCT 57.238 45.000 0.00 0.00 40.16 3.24
3152 3648 3.132646 TCAAATGCCATTTGCCCATAGTC 59.867 43.478 22.42 0.00 46.96 2.59
3153 3649 3.106054 TCAAATGCCATTTGCCCATAGT 58.894 40.909 22.42 0.00 46.96 2.12
3154 3650 3.823281 TCAAATGCCATTTGCCCATAG 57.177 42.857 22.42 0.73 46.96 2.23
3155 3651 4.515361 CTTTCAAATGCCATTTGCCCATA 58.485 39.130 22.42 5.02 46.96 2.74
3156 3652 3.349022 CTTTCAAATGCCATTTGCCCAT 58.651 40.909 22.42 0.00 46.96 4.00
3157 3653 2.780714 CTTTCAAATGCCATTTGCCCA 58.219 42.857 22.42 8.45 46.96 5.36
3158 3654 1.469703 GCTTTCAAATGCCATTTGCCC 59.530 47.619 22.42 8.72 46.96 5.36
3159 3655 2.417586 GAGCTTTCAAATGCCATTTGCC 59.582 45.455 22.42 11.80 46.96 4.52
3160 3656 3.332034 AGAGCTTTCAAATGCCATTTGC 58.668 40.909 22.42 12.55 46.96 3.68
3162 3658 4.161001 CCCTAGAGCTTTCAAATGCCATTT 59.839 41.667 0.00 0.00 0.00 2.32
3163 3659 3.703052 CCCTAGAGCTTTCAAATGCCATT 59.297 43.478 0.00 0.00 0.00 3.16
3164 3660 3.294214 CCCTAGAGCTTTCAAATGCCAT 58.706 45.455 0.00 0.00 0.00 4.40
3165 3661 2.621407 CCCCTAGAGCTTTCAAATGCCA 60.621 50.000 0.00 0.00 0.00 4.92
3166 3662 2.027385 CCCCTAGAGCTTTCAAATGCC 58.973 52.381 0.00 0.00 0.00 4.40
3167 3663 2.027385 CCCCCTAGAGCTTTCAAATGC 58.973 52.381 0.00 0.00 0.00 3.56
3185 3681 2.899303 TTTGAAGACCTGATTCCCCC 57.101 50.000 0.00 0.00 0.00 5.40
3186 3682 4.089361 ACATTTTGAAGACCTGATTCCCC 58.911 43.478 0.00 0.00 0.00 4.81
3187 3683 5.728637 AACATTTTGAAGACCTGATTCCC 57.271 39.130 0.00 0.00 0.00 3.97
3188 3684 7.710475 TCAAAAACATTTTGAAGACCTGATTCC 59.290 33.333 14.08 0.00 35.69 3.01
3189 3685 8.647143 TCAAAAACATTTTGAAGACCTGATTC 57.353 30.769 14.08 0.00 35.69 2.52
3190 3686 8.260114 ACTCAAAAACATTTTGAAGACCTGATT 58.740 29.630 16.39 0.00 37.89 2.57
3191 3687 7.785033 ACTCAAAAACATTTTGAAGACCTGAT 58.215 30.769 16.39 0.00 37.89 2.90
3192 3688 7.169158 ACTCAAAAACATTTTGAAGACCTGA 57.831 32.000 16.39 2.58 37.89 3.86
3193 3689 7.832503 AACTCAAAAACATTTTGAAGACCTG 57.167 32.000 16.39 8.46 37.89 4.00
3194 3690 8.314021 AGAAACTCAAAAACATTTTGAAGACCT 58.686 29.630 16.39 10.20 37.89 3.85
3195 3691 8.479313 AGAAACTCAAAAACATTTTGAAGACC 57.521 30.769 16.39 8.64 37.89 3.85
3196 3692 9.745323 CAAGAAACTCAAAAACATTTTGAAGAC 57.255 29.630 16.39 9.90 37.89 3.01
3197 3693 8.934825 CCAAGAAACTCAAAAACATTTTGAAGA 58.065 29.630 16.39 3.34 37.89 2.87
3198 3694 8.934825 TCCAAGAAACTCAAAAACATTTTGAAG 58.065 29.630 16.39 13.14 37.89 3.02
3199 3695 8.716909 GTCCAAGAAACTCAAAAACATTTTGAA 58.283 29.630 16.39 4.46 37.89 2.69
3200 3696 7.875041 TGTCCAAGAAACTCAAAAACATTTTGA 59.125 29.630 15.23 15.23 36.98 2.69
3201 3697 8.027440 TGTCCAAGAAACTCAAAAACATTTTG 57.973 30.769 8.83 8.83 0.00 2.44
3202 3698 8.503196 GTTGTCCAAGAAACTCAAAAACATTTT 58.497 29.630 0.00 0.00 0.00 1.82
3203 3699 7.119116 GGTTGTCCAAGAAACTCAAAAACATTT 59.881 33.333 0.00 0.00 0.00 2.32
3204 3700 6.593770 GGTTGTCCAAGAAACTCAAAAACATT 59.406 34.615 0.00 0.00 0.00 2.71
3205 3701 6.070824 AGGTTGTCCAAGAAACTCAAAAACAT 60.071 34.615 0.00 0.00 35.89 2.71
3206 3702 5.245075 AGGTTGTCCAAGAAACTCAAAAACA 59.755 36.000 0.00 0.00 35.89 2.83
3207 3703 5.720202 AGGTTGTCCAAGAAACTCAAAAAC 58.280 37.500 0.00 0.00 35.89 2.43
3208 3704 5.993748 AGGTTGTCCAAGAAACTCAAAAA 57.006 34.783 0.00 0.00 35.89 1.94
3209 3705 5.993748 AAGGTTGTCCAAGAAACTCAAAA 57.006 34.783 0.00 0.00 35.89 2.44
3210 3706 5.993748 AAAGGTTGTCCAAGAAACTCAAA 57.006 34.783 0.00 0.00 35.89 2.69
3211 3707 5.714806 AGAAAAGGTTGTCCAAGAAACTCAA 59.285 36.000 0.00 0.00 35.89 3.02
3212 3708 5.261216 AGAAAAGGTTGTCCAAGAAACTCA 58.739 37.500 0.00 0.00 35.89 3.41
3213 3709 5.836821 AGAAAAGGTTGTCCAAGAAACTC 57.163 39.130 0.00 0.00 35.89 3.01
3214 3710 6.605471 AAAGAAAAGGTTGTCCAAGAAACT 57.395 33.333 0.00 0.00 35.89 2.66
3215 3711 7.667043 AAAAAGAAAAGGTTGTCCAAGAAAC 57.333 32.000 0.00 0.00 35.89 2.78
3243 3739 0.533491 CACATTTGAGGTGCCCATGG 59.467 55.000 4.14 4.14 0.00 3.66
3250 3746 2.012673 GCTAGGAGCACATTTGAGGTG 58.987 52.381 0.00 0.00 41.89 4.00
3251 3747 2.409948 GCTAGGAGCACATTTGAGGT 57.590 50.000 0.00 0.00 41.89 3.85
3262 3758 2.169832 TGTTTGAGTGTGCTAGGAGC 57.830 50.000 0.00 0.00 42.82 4.70
3263 3759 4.199432 AGATGTTTGAGTGTGCTAGGAG 57.801 45.455 0.00 0.00 0.00 3.69
3264 3760 4.318332 CAAGATGTTTGAGTGTGCTAGGA 58.682 43.478 0.00 0.00 0.00 2.94
3265 3761 3.438087 CCAAGATGTTTGAGTGTGCTAGG 59.562 47.826 0.00 0.00 0.00 3.02
3266 3762 4.318332 TCCAAGATGTTTGAGTGTGCTAG 58.682 43.478 0.00 0.00 0.00 3.42
3267 3763 4.350368 TCCAAGATGTTTGAGTGTGCTA 57.650 40.909 0.00 0.00 0.00 3.49
3268 3764 3.213206 TCCAAGATGTTTGAGTGTGCT 57.787 42.857 0.00 0.00 0.00 4.40
3269 3765 3.829948 CATCCAAGATGTTTGAGTGTGC 58.170 45.455 0.00 0.00 0.00 4.57
3270 3766 3.504906 AGCATCCAAGATGTTTGAGTGTG 59.495 43.478 6.46 0.00 0.00 3.82
3271 3767 3.759581 AGCATCCAAGATGTTTGAGTGT 58.240 40.909 6.46 0.00 0.00 3.55
3272 3768 6.446781 AATAGCATCCAAGATGTTTGAGTG 57.553 37.500 6.46 0.00 0.00 3.51
3273 3769 7.472334 AAAATAGCATCCAAGATGTTTGAGT 57.528 32.000 6.46 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.