Multiple sequence alignment - TraesCS7B01G105000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G105000 chr7B 100.000 3195 0 0 1 3195 121114576 121117770 0.000000e+00 5901
1 TraesCS7B01G105000 chr7B 99.489 2739 12 2 1 2738 121165902 121168639 0.000000e+00 4979
2 TraesCS7B01G105000 chr7B 96.334 982 25 5 847 1817 121053378 121054359 0.000000e+00 1604
3 TraesCS7B01G105000 chr7B 95.187 1018 29 8 847 1856 121320668 121321673 0.000000e+00 1591
4 TraesCS7B01G105000 chr7B 95.441 1009 25 10 847 1844 121242422 121243420 0.000000e+00 1589
5 TraesCS7B01G105000 chr7B 93.685 871 40 3 1881 2738 121387474 121388342 0.000000e+00 1290
6 TraesCS7B01G105000 chr7B 96.343 629 18 3 1200 1824 121386488 121387115 0.000000e+00 1029
7 TraesCS7B01G105000 chr7B 89.212 825 64 12 847 1659 121495909 121496720 0.000000e+00 1007
8 TraesCS7B01G105000 chr7B 92.654 667 33 5 1883 2534 121243748 121244413 0.000000e+00 946
9 TraesCS7B01G105000 chr7B 92.956 653 29 6 1897 2534 121321920 121322570 0.000000e+00 935
10 TraesCS7B01G105000 chr7B 98.911 459 5 0 2737 3195 121065676 121066134 0.000000e+00 821
11 TraesCS7B01G105000 chr7B 97.821 459 10 0 2737 3195 122363444 122363902 0.000000e+00 793
12 TraesCS7B01G105000 chr7B 96.950 459 14 0 2737 3195 94130980 94131438 0.000000e+00 771
13 TraesCS7B01G105000 chr7B 87.985 541 40 11 1881 2404 121054658 121055190 1.630000e-172 616
14 TraesCS7B01G105000 chr7B 95.089 224 10 1 2516 2738 121325715 121325938 5.070000e-93 351
15 TraesCS7B01G105000 chr7B 92.857 224 15 1 2516 2738 121247597 121247820 1.110000e-84 324
16 TraesCS7B01G105000 chr7B 86.010 193 22 3 2460 2650 121501547 121501736 5.400000e-48 202
17 TraesCS7B01G105000 chr6B 95.181 830 40 0 1 830 124554682 124555511 0.000000e+00 1312
18 TraesCS7B01G105000 chr6B 94.477 851 46 1 1 850 702966664 702965814 0.000000e+00 1310
19 TraesCS7B01G105000 chr6B 93.529 850 47 2 1 848 204458594 204459437 0.000000e+00 1258
20 TraesCS7B01G105000 chr6B 97.168 459 13 0 2737 3195 35606061 35605603 0.000000e+00 776
21 TraesCS7B01G105000 chr6B 97.168 459 13 0 2737 3195 460824773 460825231 0.000000e+00 776
22 TraesCS7B01G105000 chr6B 97.174 460 12 1 2737 3195 686719344 686718885 0.000000e+00 776
23 TraesCS7B01G105000 chr3D 93.882 850 50 2 1 848 443726711 443725862 0.000000e+00 1280
24 TraesCS7B01G105000 chr5B 94.458 830 46 0 1 830 679741871 679741042 0.000000e+00 1279
25 TraesCS7B01G105000 chr5B 97.168 459 13 0 2737 3195 36574788 36574330 0.000000e+00 776
26 TraesCS7B01G105000 chr5B 96.950 459 14 0 2737 3195 193279538 193279996 0.000000e+00 771
27 TraesCS7B01G105000 chr4D 93.567 855 49 4 1 849 31212960 31213814 0.000000e+00 1269
28 TraesCS7B01G105000 chr4D 93.192 852 51 4 1 849 455755299 455756146 0.000000e+00 1245
29 TraesCS7B01G105000 chr2D 93.120 843 53 4 10 849 469228335 469229175 0.000000e+00 1230
30 TraesCS7B01G105000 chr7A 93.742 799 29 8 847 1635 161279760 161280547 0.000000e+00 1179
31 TraesCS7B01G105000 chr7A 90.194 826 56 11 847 1659 161650507 161651320 0.000000e+00 1053
32 TraesCS7B01G105000 chr7A 82.663 323 42 7 1874 2183 161296063 161296384 1.130000e-69 274
33 TraesCS7B01G105000 chr7A 84.016 244 25 9 2418 2650 161672567 161672807 4.150000e-54 222
34 TraesCS7B01G105000 chr7A 93.204 103 5 2 2506 2607 161296726 161296827 1.990000e-32 150
35 TraesCS7B01G105000 chr7D 91.484 822 46 12 847 1657 160487576 160488384 0.000000e+00 1109
36 TraesCS7B01G105000 chr7D 89.538 822 59 11 847 1656 160534033 160534839 0.000000e+00 1016
37 TraesCS7B01G105000 chr7D 87.296 551 48 9 1874 2404 160488621 160489169 7.580000e-171 610
38 TraesCS7B01G105000 chr7D 85.417 240 14 11 2418 2650 160489154 160489379 2.480000e-56 230
39 TraesCS7B01G105000 chr7D 84.232 241 27 6 2418 2650 160537494 160537731 1.150000e-54 224
40 TraesCS7B01G105000 chr7D 89.344 122 4 2 1676 1788 160488371 160488492 9.240000e-31 145
41 TraesCS7B01G105000 chr2B 97.374 457 12 0 2739 3195 518443528 518443984 0.000000e+00 778


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G105000 chr7B 121114576 121117770 3194 False 5901.0 5901 100.000000 1 3195 1 chr7B.!!$F3 3194
1 TraesCS7B01G105000 chr7B 121165902 121168639 2737 False 4979.0 4979 99.489000 1 2738 1 chr7B.!!$F4 2737
2 TraesCS7B01G105000 chr7B 121386488 121388342 1854 False 1159.5 1290 95.014000 1200 2738 2 chr7B.!!$F11 1538
3 TraesCS7B01G105000 chr7B 121053378 121055190 1812 False 1110.0 1604 92.159500 847 2404 2 chr7B.!!$F8 1557
4 TraesCS7B01G105000 chr7B 121495909 121496720 811 False 1007.0 1007 89.212000 847 1659 1 chr7B.!!$F5 812
5 TraesCS7B01G105000 chr7B 121320668 121325938 5270 False 959.0 1591 94.410667 847 2738 3 chr7B.!!$F10 1891
6 TraesCS7B01G105000 chr7B 121242422 121247820 5398 False 953.0 1589 93.650667 847 2738 3 chr7B.!!$F9 1891
7 TraesCS7B01G105000 chr6B 124554682 124555511 829 False 1312.0 1312 95.181000 1 830 1 chr6B.!!$F1 829
8 TraesCS7B01G105000 chr6B 702965814 702966664 850 True 1310.0 1310 94.477000 1 850 1 chr6B.!!$R3 849
9 TraesCS7B01G105000 chr6B 204458594 204459437 843 False 1258.0 1258 93.529000 1 848 1 chr6B.!!$F2 847
10 TraesCS7B01G105000 chr3D 443725862 443726711 849 True 1280.0 1280 93.882000 1 848 1 chr3D.!!$R1 847
11 TraesCS7B01G105000 chr5B 679741042 679741871 829 True 1279.0 1279 94.458000 1 830 1 chr5B.!!$R2 829
12 TraesCS7B01G105000 chr4D 31212960 31213814 854 False 1269.0 1269 93.567000 1 849 1 chr4D.!!$F1 848
13 TraesCS7B01G105000 chr4D 455755299 455756146 847 False 1245.0 1245 93.192000 1 849 1 chr4D.!!$F2 848
14 TraesCS7B01G105000 chr2D 469228335 469229175 840 False 1230.0 1230 93.120000 10 849 1 chr2D.!!$F1 839
15 TraesCS7B01G105000 chr7A 161279760 161280547 787 False 1179.0 1179 93.742000 847 1635 1 chr7A.!!$F1 788
16 TraesCS7B01G105000 chr7A 161650507 161651320 813 False 1053.0 1053 90.194000 847 1659 1 chr7A.!!$F2 812
17 TraesCS7B01G105000 chr7A 161296063 161296827 764 False 212.0 274 87.933500 1874 2607 2 chr7A.!!$F4 733
18 TraesCS7B01G105000 chr7D 160534033 160537731 3698 False 620.0 1016 86.885000 847 2650 2 chr7D.!!$F2 1803
19 TraesCS7B01G105000 chr7D 160487576 160489379 1803 False 523.5 1109 88.385250 847 2650 4 chr7D.!!$F1 1803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 250 2.232696 TGTGTTCCTGCTATTGCGTCTA 59.767 45.455 0.0 0.0 43.34 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2685 8089 0.998928 TTGAGGAGCCTGGCCAATAA 59.001 50.0 16.57 1.91 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 250 2.232696 TGTGTTCCTGCTATTGCGTCTA 59.767 45.455 0.00 0.00 43.34 2.59
1076 1096 1.284982 CTGCAGGACTTCGTCAACCG 61.285 60.000 5.57 0.00 33.68 4.44
2685 8089 3.243602 GGTTGCGGGTTGAATAACTTGTT 60.244 43.478 0.00 0.00 36.99 2.83
2694 8098 6.459923 GGTTGAATAACTTGTTTATTGGCCA 58.540 36.000 0.00 0.00 39.99 5.36
2744 8148 8.731275 TGATTGTTATTGTAGTATGTCCTTGG 57.269 34.615 0.00 0.00 0.00 3.61
2745 8149 8.544622 TGATTGTTATTGTAGTATGTCCTTGGA 58.455 33.333 0.00 0.00 0.00 3.53
2746 8150 8.964476 ATTGTTATTGTAGTATGTCCTTGGAG 57.036 34.615 0.00 0.00 0.00 3.86
2747 8151 7.490657 TGTTATTGTAGTATGTCCTTGGAGT 57.509 36.000 0.00 0.00 0.00 3.85
2748 8152 8.598202 TGTTATTGTAGTATGTCCTTGGAGTA 57.402 34.615 0.00 0.00 0.00 2.59
2749 8153 9.038072 TGTTATTGTAGTATGTCCTTGGAGTAA 57.962 33.333 0.00 0.00 0.00 2.24
2754 8158 8.246430 TGTAGTATGTCCTTGGAGTAATAAGG 57.754 38.462 0.00 0.00 0.00 2.69
2755 8159 8.063153 TGTAGTATGTCCTTGGAGTAATAAGGA 58.937 37.037 0.00 0.00 38.98 3.36
2761 8165 6.636454 TCCTTGGAGTAATAAGGACATGTT 57.364 37.500 0.00 0.00 36.58 2.71
2762 8166 7.027874 TCCTTGGAGTAATAAGGACATGTTT 57.972 36.000 0.00 0.00 36.58 2.83
2763 8167 7.110155 TCCTTGGAGTAATAAGGACATGTTTC 58.890 38.462 0.00 0.00 36.58 2.78
2764 8168 7.037586 TCCTTGGAGTAATAAGGACATGTTTCT 60.038 37.037 0.00 0.00 36.58 2.52
2765 8169 7.611855 CCTTGGAGTAATAAGGACATGTTTCTT 59.388 37.037 16.16 16.16 34.39 2.52
2766 8170 7.921786 TGGAGTAATAAGGACATGTTTCTTG 57.078 36.000 19.32 0.00 0.00 3.02
2767 8171 7.685481 TGGAGTAATAAGGACATGTTTCTTGA 58.315 34.615 19.32 8.81 0.00 3.02
2768 8172 8.328758 TGGAGTAATAAGGACATGTTTCTTGAT 58.671 33.333 19.32 12.79 0.00 2.57
2769 8173 9.178758 GGAGTAATAAGGACATGTTTCTTGATT 57.821 33.333 19.32 16.31 0.00 2.57
2774 8178 9.699410 AATAAGGACATGTTTCTTGATTATGGA 57.301 29.630 19.32 4.02 0.00 3.41
2775 8179 7.636150 AAGGACATGTTTCTTGATTATGGAG 57.364 36.000 12.62 0.00 0.00 3.86
2776 8180 6.125029 AGGACATGTTTCTTGATTATGGAGG 58.875 40.000 0.00 0.00 0.00 4.30
2777 8181 5.888161 GGACATGTTTCTTGATTATGGAGGT 59.112 40.000 0.00 0.00 0.00 3.85
2778 8182 6.183360 GGACATGTTTCTTGATTATGGAGGTG 60.183 42.308 0.00 0.00 0.00 4.00
2779 8183 6.484288 ACATGTTTCTTGATTATGGAGGTGA 58.516 36.000 0.00 0.00 0.00 4.02
2780 8184 7.121382 ACATGTTTCTTGATTATGGAGGTGAT 58.879 34.615 0.00 0.00 0.00 3.06
2781 8185 8.274322 ACATGTTTCTTGATTATGGAGGTGATA 58.726 33.333 0.00 0.00 0.00 2.15
2782 8186 9.123902 CATGTTTCTTGATTATGGAGGTGATAA 57.876 33.333 0.00 0.00 0.00 1.75
2783 8187 9.699410 ATGTTTCTTGATTATGGAGGTGATAAA 57.301 29.630 0.00 0.00 0.00 1.40
2784 8188 9.177608 TGTTTCTTGATTATGGAGGTGATAAAG 57.822 33.333 0.00 0.00 0.00 1.85
2785 8189 9.396022 GTTTCTTGATTATGGAGGTGATAAAGA 57.604 33.333 0.00 0.00 0.00 2.52
2786 8190 9.618890 TTTCTTGATTATGGAGGTGATAAAGAG 57.381 33.333 0.00 0.00 0.00 2.85
2787 8191 8.324191 TCTTGATTATGGAGGTGATAAAGAGT 57.676 34.615 0.00 0.00 0.00 3.24
2788 8192 8.772250 TCTTGATTATGGAGGTGATAAAGAGTT 58.228 33.333 0.00 0.00 0.00 3.01
2789 8193 8.964476 TTGATTATGGAGGTGATAAAGAGTTC 57.036 34.615 0.00 0.00 0.00 3.01
2790 8194 7.210174 TGATTATGGAGGTGATAAAGAGTTCG 58.790 38.462 0.00 0.00 0.00 3.95
2791 8195 3.887621 TGGAGGTGATAAAGAGTTCGG 57.112 47.619 0.00 0.00 0.00 4.30
2792 8196 2.093658 TGGAGGTGATAAAGAGTTCGGC 60.094 50.000 0.00 0.00 0.00 5.54
2793 8197 2.194271 GAGGTGATAAAGAGTTCGGCG 58.806 52.381 0.00 0.00 0.00 6.46
2794 8198 1.549170 AGGTGATAAAGAGTTCGGCGT 59.451 47.619 6.85 0.00 0.00 5.68
2795 8199 2.756760 AGGTGATAAAGAGTTCGGCGTA 59.243 45.455 6.85 0.00 0.00 4.42
2796 8200 3.194116 AGGTGATAAAGAGTTCGGCGTAA 59.806 43.478 6.85 0.00 0.00 3.18
2797 8201 3.928375 GGTGATAAAGAGTTCGGCGTAAA 59.072 43.478 6.85 0.00 0.00 2.01
2798 8202 4.032558 GGTGATAAAGAGTTCGGCGTAAAG 59.967 45.833 6.85 0.00 0.00 1.85
2799 8203 4.032558 GTGATAAAGAGTTCGGCGTAAAGG 59.967 45.833 6.85 0.00 0.00 3.11
2800 8204 1.804601 AAAGAGTTCGGCGTAAAGGG 58.195 50.000 6.85 0.00 0.00 3.95
2801 8205 0.683412 AAGAGTTCGGCGTAAAGGGT 59.317 50.000 6.85 0.00 0.00 4.34
2802 8206 0.683412 AGAGTTCGGCGTAAAGGGTT 59.317 50.000 6.85 0.00 0.00 4.11
2803 8207 1.895131 AGAGTTCGGCGTAAAGGGTTA 59.105 47.619 6.85 0.00 0.00 2.85
2804 8208 1.995484 GAGTTCGGCGTAAAGGGTTAC 59.005 52.381 6.85 0.00 36.94 2.50
2814 8218 4.752661 GTAAAGGGTTACGTTGATGCAA 57.247 40.909 0.00 0.00 30.76 4.08
2815 8219 3.915437 AAAGGGTTACGTTGATGCAAG 57.085 42.857 0.00 0.00 0.00 4.01
2816 8220 1.165270 AGGGTTACGTTGATGCAAGC 58.835 50.000 0.00 0.00 0.00 4.01
2817 8221 1.165270 GGGTTACGTTGATGCAAGCT 58.835 50.000 0.00 0.00 0.00 3.74
2818 8222 1.539827 GGGTTACGTTGATGCAAGCTT 59.460 47.619 0.00 0.00 0.00 3.74
2819 8223 2.030274 GGGTTACGTTGATGCAAGCTTT 60.030 45.455 0.00 0.00 0.00 3.51
2820 8224 3.189702 GGGTTACGTTGATGCAAGCTTTA 59.810 43.478 0.00 0.00 0.00 1.85
2821 8225 4.320641 GGGTTACGTTGATGCAAGCTTTAA 60.321 41.667 0.00 0.00 0.00 1.52
2822 8226 4.615541 GGTTACGTTGATGCAAGCTTTAAC 59.384 41.667 0.00 0.00 0.00 2.01
2823 8227 3.980646 ACGTTGATGCAAGCTTTAACA 57.019 38.095 0.00 0.00 0.00 2.41
2824 8228 3.628017 ACGTTGATGCAAGCTTTAACAC 58.372 40.909 0.00 0.00 0.00 3.32
2825 8229 2.979813 CGTTGATGCAAGCTTTAACACC 59.020 45.455 0.00 0.00 0.00 4.16
2826 8230 3.304659 CGTTGATGCAAGCTTTAACACCT 60.305 43.478 0.00 0.00 0.00 4.00
2827 8231 4.083537 CGTTGATGCAAGCTTTAACACCTA 60.084 41.667 0.00 0.00 0.00 3.08
2828 8232 5.391950 CGTTGATGCAAGCTTTAACACCTAT 60.392 40.000 0.00 0.00 0.00 2.57
2829 8233 5.818136 TGATGCAAGCTTTAACACCTATC 57.182 39.130 0.00 0.00 0.00 2.08
2830 8234 5.500234 TGATGCAAGCTTTAACACCTATCT 58.500 37.500 0.00 0.00 0.00 1.98
2831 8235 5.355071 TGATGCAAGCTTTAACACCTATCTG 59.645 40.000 0.00 0.00 0.00 2.90
2832 8236 4.905429 TGCAAGCTTTAACACCTATCTGA 58.095 39.130 0.00 0.00 0.00 3.27
2833 8237 5.312895 TGCAAGCTTTAACACCTATCTGAA 58.687 37.500 0.00 0.00 0.00 3.02
2834 8238 5.945784 TGCAAGCTTTAACACCTATCTGAAT 59.054 36.000 0.00 0.00 0.00 2.57
2835 8239 6.127925 TGCAAGCTTTAACACCTATCTGAATG 60.128 38.462 0.00 0.00 0.00 2.67
2836 8240 6.094048 GCAAGCTTTAACACCTATCTGAATGA 59.906 38.462 0.00 0.00 0.00 2.57
2837 8241 7.467623 CAAGCTTTAACACCTATCTGAATGAC 58.532 38.462 0.00 0.00 0.00 3.06
2838 8242 6.951971 AGCTTTAACACCTATCTGAATGACT 58.048 36.000 0.00 0.00 0.00 3.41
2839 8243 7.044798 AGCTTTAACACCTATCTGAATGACTC 58.955 38.462 0.00 0.00 0.00 3.36
2840 8244 7.044798 GCTTTAACACCTATCTGAATGACTCT 58.955 38.462 0.00 0.00 0.00 3.24
2841 8245 7.010923 GCTTTAACACCTATCTGAATGACTCTG 59.989 40.741 0.00 0.00 0.00 3.35
2842 8246 7.718334 TTAACACCTATCTGAATGACTCTGA 57.282 36.000 0.00 0.00 36.55 3.27
2843 8247 5.850557 ACACCTATCTGAATGACTCTGAG 57.149 43.478 2.45 2.45 35.68 3.35
2844 8248 5.268387 ACACCTATCTGAATGACTCTGAGT 58.732 41.667 10.66 10.66 35.68 3.41
2845 8249 6.427441 ACACCTATCTGAATGACTCTGAGTA 58.573 40.000 10.86 0.05 35.68 2.59
2846 8250 6.545666 ACACCTATCTGAATGACTCTGAGTAG 59.454 42.308 10.86 4.26 35.68 2.57
2847 8251 5.534654 ACCTATCTGAATGACTCTGAGTAGC 59.465 44.000 10.86 0.00 35.68 3.58
2848 8252 5.534278 CCTATCTGAATGACTCTGAGTAGCA 59.466 44.000 10.86 5.98 35.68 3.49
2849 8253 5.929058 ATCTGAATGACTCTGAGTAGCAA 57.071 39.130 10.86 0.00 35.68 3.91
2850 8254 5.728637 TCTGAATGACTCTGAGTAGCAAA 57.271 39.130 10.86 0.00 0.00 3.68
2851 8255 5.473931 TCTGAATGACTCTGAGTAGCAAAC 58.526 41.667 10.86 5.16 0.00 2.93
2852 8256 4.569943 TGAATGACTCTGAGTAGCAAACC 58.430 43.478 10.86 0.00 0.00 3.27
2853 8257 2.724977 TGACTCTGAGTAGCAAACCG 57.275 50.000 10.86 0.00 0.00 4.44
2854 8258 1.272490 TGACTCTGAGTAGCAAACCGG 59.728 52.381 10.86 0.00 0.00 5.28
2855 8259 1.544691 GACTCTGAGTAGCAAACCGGA 59.455 52.381 9.46 0.00 0.00 5.14
2856 8260 2.166664 GACTCTGAGTAGCAAACCGGAT 59.833 50.000 9.46 0.00 0.00 4.18
2857 8261 3.362706 ACTCTGAGTAGCAAACCGGATA 58.637 45.455 9.46 0.00 0.00 2.59
2858 8262 3.130693 ACTCTGAGTAGCAAACCGGATAC 59.869 47.826 9.46 2.91 0.00 2.24
2874 8278 3.910648 GGATACGTATAGTGGAGCAACC 58.089 50.000 8.34 0.00 39.54 3.77
2886 8290 2.760092 TGGAGCAACCATTTGGAATAGC 59.240 45.455 3.01 1.91 44.64 2.97
2887 8291 3.026694 GGAGCAACCATTTGGAATAGCT 58.973 45.455 3.01 6.58 38.94 3.32
2888 8292 3.067320 GGAGCAACCATTTGGAATAGCTC 59.933 47.826 19.20 19.20 41.89 4.09
2889 8293 3.026694 AGCAACCATTTGGAATAGCTCC 58.973 45.455 3.01 0.00 45.64 4.70
2906 8310 3.257933 CAAGTGGAGCGTGGAAGC 58.742 61.111 0.00 0.00 37.41 3.86
2907 8311 1.597854 CAAGTGGAGCGTGGAAGCA 60.598 57.895 0.00 0.00 40.15 3.91
2908 8312 1.302033 AAGTGGAGCGTGGAAGCAG 60.302 57.895 0.00 0.00 40.15 4.24
2909 8313 2.031163 GTGGAGCGTGGAAGCAGT 59.969 61.111 0.00 0.00 40.15 4.40
2910 8314 1.185618 AGTGGAGCGTGGAAGCAGTA 61.186 55.000 0.00 0.00 40.15 2.74
2911 8315 0.108138 GTGGAGCGTGGAAGCAGTAT 60.108 55.000 0.00 0.00 40.15 2.12
2912 8316 0.613260 TGGAGCGTGGAAGCAGTATT 59.387 50.000 0.00 0.00 40.15 1.89
2913 8317 1.003118 TGGAGCGTGGAAGCAGTATTT 59.997 47.619 0.00 0.00 40.15 1.40
2914 8318 2.235155 TGGAGCGTGGAAGCAGTATTTA 59.765 45.455 0.00 0.00 40.15 1.40
2915 8319 2.608090 GGAGCGTGGAAGCAGTATTTAC 59.392 50.000 0.00 0.00 40.15 2.01
2916 8320 3.259064 GAGCGTGGAAGCAGTATTTACA 58.741 45.455 0.00 0.00 40.15 2.41
2917 8321 3.670625 AGCGTGGAAGCAGTATTTACAA 58.329 40.909 0.00 0.00 40.15 2.41
2918 8322 4.261801 AGCGTGGAAGCAGTATTTACAAT 58.738 39.130 0.00 0.00 40.15 2.71
2919 8323 5.424757 AGCGTGGAAGCAGTATTTACAATA 58.575 37.500 0.00 0.00 40.15 1.90
2920 8324 6.055588 AGCGTGGAAGCAGTATTTACAATAT 58.944 36.000 0.00 0.00 40.15 1.28
2921 8325 6.017934 AGCGTGGAAGCAGTATTTACAATATG 60.018 38.462 0.00 0.00 40.15 1.78
2922 8326 6.018262 GCGTGGAAGCAGTATTTACAATATGA 60.018 38.462 0.00 0.00 37.05 2.15
2923 8327 7.345192 CGTGGAAGCAGTATTTACAATATGAC 58.655 38.462 0.00 0.00 0.00 3.06
2924 8328 7.518370 CGTGGAAGCAGTATTTACAATATGACC 60.518 40.741 0.00 0.00 0.00 4.02
2925 8329 7.499232 GTGGAAGCAGTATTTACAATATGACCT 59.501 37.037 0.00 0.00 0.00 3.85
2926 8330 8.710239 TGGAAGCAGTATTTACAATATGACCTA 58.290 33.333 0.00 0.00 0.00 3.08
2927 8331 9.209175 GGAAGCAGTATTTACAATATGACCTAG 57.791 37.037 0.00 0.00 0.00 3.02
2928 8332 9.982651 GAAGCAGTATTTACAATATGACCTAGA 57.017 33.333 0.00 0.00 0.00 2.43
2936 8340 9.950680 ATTTACAATATGACCTAGAAATTTGCG 57.049 29.630 0.00 0.00 0.00 4.85
2937 8341 8.725405 TTACAATATGACCTAGAAATTTGCGA 57.275 30.769 0.00 0.00 0.00 5.10
2938 8342 7.624360 ACAATATGACCTAGAAATTTGCGAA 57.376 32.000 0.00 0.00 0.00 4.70
2939 8343 7.697691 ACAATATGACCTAGAAATTTGCGAAG 58.302 34.615 0.00 0.00 0.00 3.79
2940 8344 7.336931 ACAATATGACCTAGAAATTTGCGAAGT 59.663 33.333 0.00 0.00 0.00 3.01
2941 8345 8.826710 CAATATGACCTAGAAATTTGCGAAGTA 58.173 33.333 0.00 0.00 0.00 2.24
2942 8346 6.663944 ATGACCTAGAAATTTGCGAAGTAC 57.336 37.500 0.00 0.00 0.00 2.73
2943 8347 5.543714 TGACCTAGAAATTTGCGAAGTACA 58.456 37.500 0.00 0.00 0.00 2.90
2944 8348 6.170506 TGACCTAGAAATTTGCGAAGTACAT 58.829 36.000 0.00 0.00 0.00 2.29
2945 8349 7.324935 TGACCTAGAAATTTGCGAAGTACATA 58.675 34.615 0.00 0.00 0.00 2.29
2946 8350 7.277098 TGACCTAGAAATTTGCGAAGTACATAC 59.723 37.037 0.00 0.00 0.00 2.39
2947 8351 6.255020 ACCTAGAAATTTGCGAAGTACATACG 59.745 38.462 0.00 0.00 0.00 3.06
2948 8352 5.464965 AGAAATTTGCGAAGTACATACGG 57.535 39.130 0.00 0.00 0.00 4.02
2949 8353 5.172934 AGAAATTTGCGAAGTACATACGGA 58.827 37.500 0.00 0.00 0.00 4.69
2950 8354 5.815740 AGAAATTTGCGAAGTACATACGGAT 59.184 36.000 0.00 0.00 0.00 4.18
2951 8355 5.652744 AATTTGCGAAGTACATACGGATC 57.347 39.130 0.00 0.00 0.00 3.36
2952 8356 4.380841 TTTGCGAAGTACATACGGATCT 57.619 40.909 0.00 0.00 0.00 2.75
2953 8357 3.349488 TGCGAAGTACATACGGATCTG 57.651 47.619 0.00 0.00 0.00 2.90
2954 8358 2.946990 TGCGAAGTACATACGGATCTGA 59.053 45.455 9.00 0.00 0.00 3.27
2955 8359 3.379057 TGCGAAGTACATACGGATCTGAA 59.621 43.478 9.00 0.00 0.00 3.02
2956 8360 4.037565 TGCGAAGTACATACGGATCTGAAT 59.962 41.667 9.00 0.00 0.00 2.57
2957 8361 4.383052 GCGAAGTACATACGGATCTGAATG 59.617 45.833 9.00 4.49 0.00 2.67
2958 8362 5.520632 CGAAGTACATACGGATCTGAATGT 58.479 41.667 9.00 10.06 36.56 2.71
2959 8363 5.977725 CGAAGTACATACGGATCTGAATGTT 59.022 40.000 9.00 0.00 34.54 2.71
2960 8364 6.074835 CGAAGTACATACGGATCTGAATGTTG 60.075 42.308 9.00 1.00 34.54 3.33
2961 8365 5.050490 AGTACATACGGATCTGAATGTTGC 58.950 41.667 9.00 5.18 34.54 4.17
2962 8366 3.872696 ACATACGGATCTGAATGTTGCA 58.127 40.909 9.00 0.00 0.00 4.08
2963 8367 3.873361 ACATACGGATCTGAATGTTGCAG 59.127 43.478 9.00 0.00 34.71 4.41
2964 8368 2.768253 ACGGATCTGAATGTTGCAGA 57.232 45.000 9.00 0.00 45.52 4.26
2969 8373 2.768253 TCTGAATGTTGCAGATCCGT 57.232 45.000 0.00 0.00 37.46 4.69
2970 8374 3.057969 TCTGAATGTTGCAGATCCGTT 57.942 42.857 0.00 0.00 37.46 4.44
2971 8375 2.743664 TCTGAATGTTGCAGATCCGTTG 59.256 45.455 0.00 0.00 37.46 4.10
2972 8376 2.743664 CTGAATGTTGCAGATCCGTTGA 59.256 45.455 0.00 0.00 35.39 3.18
2973 8377 2.483877 TGAATGTTGCAGATCCGTTGAC 59.516 45.455 0.00 0.00 0.00 3.18
2974 8378 2.479566 ATGTTGCAGATCCGTTGACT 57.520 45.000 0.00 0.00 0.00 3.41
2975 8379 1.511850 TGTTGCAGATCCGTTGACTG 58.488 50.000 0.00 0.00 35.14 3.51
2976 8380 1.069978 TGTTGCAGATCCGTTGACTGA 59.930 47.619 0.00 0.00 34.07 3.41
2977 8381 2.143122 GTTGCAGATCCGTTGACTGAA 58.857 47.619 0.00 0.00 34.07 3.02
2978 8382 2.542020 TGCAGATCCGTTGACTGAAA 57.458 45.000 0.00 0.00 34.07 2.69
2979 8383 2.143122 TGCAGATCCGTTGACTGAAAC 58.857 47.619 0.00 0.00 34.07 2.78
2980 8384 1.464997 GCAGATCCGTTGACTGAAACC 59.535 52.381 0.00 0.00 34.07 3.27
2981 8385 2.872038 GCAGATCCGTTGACTGAAACCT 60.872 50.000 0.00 0.00 34.07 3.50
2982 8386 2.996621 CAGATCCGTTGACTGAAACCTC 59.003 50.000 0.00 0.00 34.07 3.85
2983 8387 2.900546 AGATCCGTTGACTGAAACCTCT 59.099 45.455 0.00 0.00 0.00 3.69
2984 8388 2.814280 TCCGTTGACTGAAACCTCTC 57.186 50.000 0.00 0.00 0.00 3.20
2985 8389 2.317040 TCCGTTGACTGAAACCTCTCT 58.683 47.619 0.00 0.00 0.00 3.10
2986 8390 2.296471 TCCGTTGACTGAAACCTCTCTC 59.704 50.000 0.00 0.00 0.00 3.20
2987 8391 2.035961 CCGTTGACTGAAACCTCTCTCA 59.964 50.000 0.00 0.00 0.00 3.27
2988 8392 3.053455 CGTTGACTGAAACCTCTCTCAC 58.947 50.000 0.00 0.00 0.00 3.51
2989 8393 3.490933 CGTTGACTGAAACCTCTCTCACA 60.491 47.826 0.00 0.00 0.00 3.58
2990 8394 4.442706 GTTGACTGAAACCTCTCTCACAA 58.557 43.478 0.00 0.00 0.00 3.33
2991 8395 4.327982 TGACTGAAACCTCTCTCACAAG 57.672 45.455 0.00 0.00 0.00 3.16
2992 8396 3.063485 GACTGAAACCTCTCTCACAAGC 58.937 50.000 0.00 0.00 0.00 4.01
2993 8397 2.435805 ACTGAAACCTCTCTCACAAGCA 59.564 45.455 0.00 0.00 0.00 3.91
2994 8398 3.118261 ACTGAAACCTCTCTCACAAGCAA 60.118 43.478 0.00 0.00 0.00 3.91
2995 8399 3.879295 CTGAAACCTCTCTCACAAGCAAA 59.121 43.478 0.00 0.00 0.00 3.68
2996 8400 4.269183 TGAAACCTCTCTCACAAGCAAAA 58.731 39.130 0.00 0.00 0.00 2.44
2997 8401 4.096382 TGAAACCTCTCTCACAAGCAAAAC 59.904 41.667 0.00 0.00 0.00 2.43
2998 8402 3.281727 ACCTCTCTCACAAGCAAAACA 57.718 42.857 0.00 0.00 0.00 2.83
2999 8403 3.825328 ACCTCTCTCACAAGCAAAACAT 58.175 40.909 0.00 0.00 0.00 2.71
3000 8404 3.567164 ACCTCTCTCACAAGCAAAACATG 59.433 43.478 0.00 0.00 0.00 3.21
3001 8405 3.817084 CCTCTCTCACAAGCAAAACATGA 59.183 43.478 0.00 0.00 0.00 3.07
3002 8406 4.458295 CCTCTCTCACAAGCAAAACATGAT 59.542 41.667 0.00 0.00 0.00 2.45
3003 8407 5.391736 CCTCTCTCACAAGCAAAACATGATC 60.392 44.000 0.00 0.00 0.00 2.92
3004 8408 5.065235 TCTCTCACAAGCAAAACATGATCA 58.935 37.500 0.00 0.00 0.00 2.92
3005 8409 5.532032 TCTCTCACAAGCAAAACATGATCAA 59.468 36.000 0.00 0.00 0.00 2.57
3006 8410 6.039605 TCTCTCACAAGCAAAACATGATCAAA 59.960 34.615 0.00 0.00 0.00 2.69
3007 8411 5.978919 TCTCACAAGCAAAACATGATCAAAC 59.021 36.000 0.00 0.00 0.00 2.93
3008 8412 5.049167 TCACAAGCAAAACATGATCAAACC 58.951 37.500 0.00 0.00 0.00 3.27
3009 8413 4.211794 CACAAGCAAAACATGATCAAACCC 59.788 41.667 0.00 0.00 0.00 4.11
3010 8414 3.683365 AGCAAAACATGATCAAACCCC 57.317 42.857 0.00 0.00 0.00 4.95
3011 8415 3.242011 AGCAAAACATGATCAAACCCCT 58.758 40.909 0.00 0.00 0.00 4.79
3012 8416 3.007182 AGCAAAACATGATCAAACCCCTG 59.993 43.478 0.00 0.00 0.00 4.45
3013 8417 3.006752 GCAAAACATGATCAAACCCCTGA 59.993 43.478 0.00 0.00 0.00 3.86
3014 8418 4.502950 GCAAAACATGATCAAACCCCTGAA 60.503 41.667 0.00 0.00 0.00 3.02
3015 8419 4.871933 AAACATGATCAAACCCCTGAAC 57.128 40.909 0.00 0.00 0.00 3.18
3016 8420 3.814504 ACATGATCAAACCCCTGAACT 57.185 42.857 0.00 0.00 0.00 3.01
3017 8421 3.690460 ACATGATCAAACCCCTGAACTC 58.310 45.455 0.00 0.00 0.00 3.01
3018 8422 3.074390 ACATGATCAAACCCCTGAACTCA 59.926 43.478 0.00 0.00 0.00 3.41
3019 8423 4.264083 ACATGATCAAACCCCTGAACTCAT 60.264 41.667 0.00 0.00 29.18 2.90
3020 8424 4.387026 TGATCAAACCCCTGAACTCATT 57.613 40.909 0.00 0.00 0.00 2.57
3021 8425 4.081406 TGATCAAACCCCTGAACTCATTG 58.919 43.478 0.00 0.00 0.00 2.82
3022 8426 3.874383 TCAAACCCCTGAACTCATTGA 57.126 42.857 0.00 0.00 0.00 2.57
3023 8427 3.754965 TCAAACCCCTGAACTCATTGAG 58.245 45.455 12.17 12.17 35.52 3.02
3024 8428 3.138283 TCAAACCCCTGAACTCATTGAGT 59.862 43.478 13.61 13.61 45.64 3.41
3025 8429 3.425162 AACCCCTGAACTCATTGAGTC 57.575 47.619 19.23 12.94 42.59 3.36
3026 8430 2.625639 ACCCCTGAACTCATTGAGTCT 58.374 47.619 19.23 9.92 42.59 3.24
3027 8431 2.982488 ACCCCTGAACTCATTGAGTCTT 59.018 45.455 19.23 5.25 42.59 3.01
3028 8432 4.168101 ACCCCTGAACTCATTGAGTCTTA 58.832 43.478 19.23 8.27 42.59 2.10
3029 8433 4.597507 ACCCCTGAACTCATTGAGTCTTAA 59.402 41.667 19.23 5.38 42.59 1.85
3030 8434 5.251700 ACCCCTGAACTCATTGAGTCTTAAT 59.748 40.000 19.23 3.74 42.59 1.40
3031 8435 5.819901 CCCCTGAACTCATTGAGTCTTAATC 59.180 44.000 19.23 12.95 42.59 1.75
3032 8436 6.409704 CCCTGAACTCATTGAGTCTTAATCA 58.590 40.000 19.23 16.39 42.59 2.57
3033 8437 6.314896 CCCTGAACTCATTGAGTCTTAATCAC 59.685 42.308 19.23 5.41 42.59 3.06
3034 8438 6.875726 CCTGAACTCATTGAGTCTTAATCACA 59.124 38.462 19.23 8.87 42.59 3.58
3035 8439 7.551974 CCTGAACTCATTGAGTCTTAATCACAT 59.448 37.037 19.23 0.05 42.59 3.21
3036 8440 8.260270 TGAACTCATTGAGTCTTAATCACATG 57.740 34.615 19.23 0.00 42.59 3.21
3037 8441 8.096414 TGAACTCATTGAGTCTTAATCACATGA 58.904 33.333 19.23 0.00 42.59 3.07
3038 8442 9.107177 GAACTCATTGAGTCTTAATCACATGAT 57.893 33.333 19.23 0.00 42.59 2.45
3039 8443 8.659925 ACTCATTGAGTCTTAATCACATGATC 57.340 34.615 13.61 0.00 38.71 2.92
3040 8444 8.262933 ACTCATTGAGTCTTAATCACATGATCA 58.737 33.333 13.61 0.00 38.71 2.92
3041 8445 9.274206 CTCATTGAGTCTTAATCACATGATCAT 57.726 33.333 1.18 1.18 32.75 2.45
3042 8446 9.052759 TCATTGAGTCTTAATCACATGATCATG 57.947 33.333 29.95 29.95 44.15 3.07
3058 8462 8.707938 CATGATCATGTGAACTAGTTTAGTGA 57.292 34.615 24.87 12.60 35.19 3.41
3059 8463 8.598924 CATGATCATGTGAACTAGTTTAGTGAC 58.401 37.037 24.87 8.29 35.19 3.67
3060 8464 7.666623 TGATCATGTGAACTAGTTTAGTGACA 58.333 34.615 10.02 8.37 39.39 3.58
3061 8465 7.598869 TGATCATGTGAACTAGTTTAGTGACAC 59.401 37.037 10.02 12.03 42.12 3.67
3062 8466 7.050970 TCATGTGAACTAGTTTAGTGACACT 57.949 36.000 13.68 13.68 42.19 3.55
3063 8467 8.173542 TCATGTGAACTAGTTTAGTGACACTA 57.826 34.615 11.37 11.37 42.19 2.74
3064 8468 8.297426 TCATGTGAACTAGTTTAGTGACACTAG 58.703 37.037 14.74 7.94 45.56 2.57
3075 8479 9.530633 AGTTTAGTGACACTAGTAAACTCTTTG 57.469 33.333 21.43 0.00 46.26 2.77
3076 8480 8.762426 GTTTAGTGACACTAGTAAACTCTTTGG 58.238 37.037 18.82 0.00 40.66 3.28
3077 8481 6.726490 AGTGACACTAGTAAACTCTTTGGA 57.274 37.500 6.24 0.00 0.00 3.53
3078 8482 7.304497 AGTGACACTAGTAAACTCTTTGGAT 57.696 36.000 6.24 0.00 0.00 3.41
3079 8483 7.155328 AGTGACACTAGTAAACTCTTTGGATG 58.845 38.462 6.24 0.00 0.00 3.51
3080 8484 6.929606 GTGACACTAGTAAACTCTTTGGATGT 59.070 38.462 0.00 0.00 0.00 3.06
3081 8485 7.441458 GTGACACTAGTAAACTCTTTGGATGTT 59.559 37.037 0.00 0.00 0.00 2.71
3082 8486 8.644216 TGACACTAGTAAACTCTTTGGATGTTA 58.356 33.333 0.00 0.00 0.00 2.41
3083 8487 9.141400 GACACTAGTAAACTCTTTGGATGTTAG 57.859 37.037 0.00 0.00 0.00 2.34
3084 8488 8.648693 ACACTAGTAAACTCTTTGGATGTTAGT 58.351 33.333 0.00 0.00 0.00 2.24
3085 8489 9.141400 CACTAGTAAACTCTTTGGATGTTAGTC 57.859 37.037 0.00 0.00 0.00 2.59
3086 8490 8.867097 ACTAGTAAACTCTTTGGATGTTAGTCA 58.133 33.333 0.00 0.00 0.00 3.41
3087 8491 7.964604 AGTAAACTCTTTGGATGTTAGTCAC 57.035 36.000 0.00 0.00 0.00 3.67
3088 8492 7.506114 AGTAAACTCTTTGGATGTTAGTCACA 58.494 34.615 0.00 0.00 40.71 3.58
3090 8494 6.808008 AACTCTTTGGATGTTAGTCACATG 57.192 37.500 0.00 0.00 46.96 3.21
3091 8495 5.248640 ACTCTTTGGATGTTAGTCACATGG 58.751 41.667 0.00 0.00 46.96 3.66
3092 8496 4.009675 TCTTTGGATGTTAGTCACATGGC 58.990 43.478 0.00 0.00 46.96 4.40
3093 8497 2.022764 TGGATGTTAGTCACATGGCG 57.977 50.000 0.00 0.00 46.96 5.69
3094 8498 1.552792 TGGATGTTAGTCACATGGCGA 59.447 47.619 0.00 0.00 46.96 5.54
3095 8499 2.170397 TGGATGTTAGTCACATGGCGAT 59.830 45.455 0.00 0.00 46.96 4.58
3096 8500 2.545526 GGATGTTAGTCACATGGCGATG 59.454 50.000 7.21 7.21 46.96 3.84
3097 8501 2.760634 TGTTAGTCACATGGCGATGT 57.239 45.000 8.73 8.73 44.08 3.06
3105 8509 2.533266 ACATGGCGATGTGACCTATC 57.467 50.000 14.05 0.00 41.52 2.08
3106 8510 1.762370 ACATGGCGATGTGACCTATCA 59.238 47.619 14.05 0.00 41.52 2.15
3107 8511 2.224137 ACATGGCGATGTGACCTATCAG 60.224 50.000 14.05 0.00 41.52 2.90
3108 8512 1.485124 TGGCGATGTGACCTATCAGT 58.515 50.000 0.00 0.00 34.75 3.41
3109 8513 1.136891 TGGCGATGTGACCTATCAGTG 59.863 52.381 0.00 0.00 34.75 3.66
3110 8514 1.137086 GGCGATGTGACCTATCAGTGT 59.863 52.381 0.00 0.00 34.75 3.55
3111 8515 2.418746 GGCGATGTGACCTATCAGTGTT 60.419 50.000 0.00 0.00 34.75 3.32
3112 8516 3.181479 GGCGATGTGACCTATCAGTGTTA 60.181 47.826 0.00 0.00 34.75 2.41
3113 8517 4.430007 GCGATGTGACCTATCAGTGTTAA 58.570 43.478 0.00 0.00 34.75 2.01
3114 8518 5.050490 GCGATGTGACCTATCAGTGTTAAT 58.950 41.667 0.00 0.00 34.75 1.40
3115 8519 5.175856 GCGATGTGACCTATCAGTGTTAATC 59.824 44.000 0.00 0.00 34.75 1.75
3116 8520 6.273071 CGATGTGACCTATCAGTGTTAATCA 58.727 40.000 0.00 0.00 34.75 2.57
3117 8521 6.199154 CGATGTGACCTATCAGTGTTAATCAC 59.801 42.308 13.57 13.57 46.46 3.06
3119 8523 7.568349 ATGTGACCTATCAGTGTTAATCACAT 58.432 34.615 21.64 21.64 46.24 3.21
3136 8540 3.827008 ACATGGCGATGTGAACTAGAT 57.173 42.857 14.05 0.00 41.52 1.98
3137 8541 4.142609 ACATGGCGATGTGAACTAGATT 57.857 40.909 14.05 0.00 41.52 2.40
3138 8542 5.276461 ACATGGCGATGTGAACTAGATTA 57.724 39.130 14.05 0.00 41.52 1.75
3139 8543 5.858381 ACATGGCGATGTGAACTAGATTAT 58.142 37.500 14.05 0.00 41.52 1.28
3140 8544 6.291377 ACATGGCGATGTGAACTAGATTATT 58.709 36.000 14.05 0.00 41.52 1.40
3141 8545 6.203530 ACATGGCGATGTGAACTAGATTATTG 59.796 38.462 14.05 0.00 41.52 1.90
3142 8546 5.912892 TGGCGATGTGAACTAGATTATTGA 58.087 37.500 0.00 0.00 0.00 2.57
3143 8547 5.753438 TGGCGATGTGAACTAGATTATTGAC 59.247 40.000 0.00 0.00 0.00 3.18
3144 8548 5.986135 GGCGATGTGAACTAGATTATTGACT 59.014 40.000 0.00 0.00 0.00 3.41
3145 8549 6.144724 GGCGATGTGAACTAGATTATTGACTC 59.855 42.308 0.00 0.00 0.00 3.36
3146 8550 6.920758 GCGATGTGAACTAGATTATTGACTCT 59.079 38.462 0.00 0.00 0.00 3.24
3147 8551 8.076781 GCGATGTGAACTAGATTATTGACTCTA 58.923 37.037 0.00 0.00 0.00 2.43
3148 8552 9.605955 CGATGTGAACTAGATTATTGACTCTAG 57.394 37.037 0.00 5.31 44.27 2.43
3156 8560 8.572828 CTAGATTATTGACTCTAGTGCAAGTG 57.427 38.462 0.00 0.00 37.34 3.16
3157 8561 6.344500 AGATTATTGACTCTAGTGCAAGTGG 58.656 40.000 0.00 0.00 0.00 4.00
3158 8562 2.839486 TTGACTCTAGTGCAAGTGGG 57.161 50.000 0.00 0.00 0.00 4.61
3159 8563 2.009681 TGACTCTAGTGCAAGTGGGA 57.990 50.000 0.00 0.00 0.00 4.37
3160 8564 1.895798 TGACTCTAGTGCAAGTGGGAG 59.104 52.381 0.00 0.00 0.00 4.30
3161 8565 2.171840 GACTCTAGTGCAAGTGGGAGA 58.828 52.381 0.00 0.00 0.00 3.71
3162 8566 1.896465 ACTCTAGTGCAAGTGGGAGAC 59.104 52.381 0.00 0.00 0.00 3.36
3163 8567 2.175202 CTCTAGTGCAAGTGGGAGACT 58.825 52.381 0.00 0.00 35.94 3.24
3164 8568 1.895798 TCTAGTGCAAGTGGGAGACTG 59.104 52.381 0.00 0.00 34.02 3.51
3165 8569 1.620819 CTAGTGCAAGTGGGAGACTGT 59.379 52.381 0.00 0.00 34.02 3.55
3166 8570 0.839946 AGTGCAAGTGGGAGACTGTT 59.160 50.000 0.00 0.00 34.02 3.16
3167 8571 0.947244 GTGCAAGTGGGAGACTGTTG 59.053 55.000 0.00 0.00 34.02 3.33
3168 8572 0.179020 TGCAAGTGGGAGACTGTTGG 60.179 55.000 0.00 0.00 34.02 3.77
3169 8573 0.108585 GCAAGTGGGAGACTGTTGGA 59.891 55.000 0.00 0.00 34.02 3.53
3170 8574 1.476833 GCAAGTGGGAGACTGTTGGAA 60.477 52.381 0.00 0.00 34.02 3.53
3171 8575 2.930950 CAAGTGGGAGACTGTTGGAAA 58.069 47.619 0.00 0.00 34.02 3.13
3172 8576 3.490348 CAAGTGGGAGACTGTTGGAAAT 58.510 45.455 0.00 0.00 34.02 2.17
3173 8577 4.651778 CAAGTGGGAGACTGTTGGAAATA 58.348 43.478 0.00 0.00 34.02 1.40
3174 8578 5.256474 CAAGTGGGAGACTGTTGGAAATAT 58.744 41.667 0.00 0.00 34.02 1.28
3175 8579 4.848357 AGTGGGAGACTGTTGGAAATATG 58.152 43.478 0.00 0.00 31.75 1.78
3176 8580 3.378427 GTGGGAGACTGTTGGAAATATGC 59.622 47.826 0.00 0.00 0.00 3.14
3177 8581 2.952310 GGGAGACTGTTGGAAATATGCC 59.048 50.000 0.00 0.00 0.00 4.40
3178 8582 2.952310 GGAGACTGTTGGAAATATGCCC 59.048 50.000 0.00 0.00 0.00 5.36
3179 8583 3.372025 GGAGACTGTTGGAAATATGCCCT 60.372 47.826 0.00 0.00 0.00 5.19
3180 8584 4.141482 GGAGACTGTTGGAAATATGCCCTA 60.141 45.833 0.00 0.00 0.00 3.53
3181 8585 5.041191 AGACTGTTGGAAATATGCCCTAG 57.959 43.478 0.00 0.00 0.00 3.02
3182 8586 4.721776 AGACTGTTGGAAATATGCCCTAGA 59.278 41.667 0.00 0.00 0.00 2.43
3183 8587 5.041191 ACTGTTGGAAATATGCCCTAGAG 57.959 43.478 0.00 0.00 0.00 2.43
3184 8588 4.141390 ACTGTTGGAAATATGCCCTAGAGG 60.141 45.833 0.00 0.00 39.47 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2685 8089 0.998928 TTGAGGAGCCTGGCCAATAA 59.001 50.000 16.57 1.91 0.00 1.40
2694 8098 0.252479 CAGCTGTGATTGAGGAGCCT 59.748 55.000 5.25 0.00 31.43 4.58
2738 8142 6.636454 AACATGTCCTTATTACTCCAAGGA 57.364 37.500 0.00 0.00 46.35 3.36
2739 8143 7.112779 AGAAACATGTCCTTATTACTCCAAGG 58.887 38.462 0.00 0.00 42.34 3.61
2740 8144 8.454106 CAAGAAACATGTCCTTATTACTCCAAG 58.546 37.037 0.00 0.00 0.00 3.61
2741 8145 8.160765 TCAAGAAACATGTCCTTATTACTCCAA 58.839 33.333 0.00 0.00 0.00 3.53
2742 8146 7.685481 TCAAGAAACATGTCCTTATTACTCCA 58.315 34.615 0.00 0.00 0.00 3.86
2743 8147 8.738645 ATCAAGAAACATGTCCTTATTACTCC 57.261 34.615 0.00 0.00 0.00 3.85
2748 8152 9.699410 TCCATAATCAAGAAACATGTCCTTATT 57.301 29.630 0.00 8.96 0.00 1.40
2749 8153 9.347240 CTCCATAATCAAGAAACATGTCCTTAT 57.653 33.333 0.00 0.00 0.00 1.73
2750 8154 7.775093 CCTCCATAATCAAGAAACATGTCCTTA 59.225 37.037 0.00 0.00 0.00 2.69
2751 8155 6.604795 CCTCCATAATCAAGAAACATGTCCTT 59.395 38.462 0.00 3.08 0.00 3.36
2752 8156 6.125029 CCTCCATAATCAAGAAACATGTCCT 58.875 40.000 0.00 0.00 0.00 3.85
2753 8157 5.888161 ACCTCCATAATCAAGAAACATGTCC 59.112 40.000 0.00 0.00 0.00 4.02
2754 8158 6.599244 TCACCTCCATAATCAAGAAACATGTC 59.401 38.462 0.00 0.00 0.00 3.06
2755 8159 6.484288 TCACCTCCATAATCAAGAAACATGT 58.516 36.000 0.00 0.00 0.00 3.21
2756 8160 7.578310 ATCACCTCCATAATCAAGAAACATG 57.422 36.000 0.00 0.00 0.00 3.21
2757 8161 9.699410 TTTATCACCTCCATAATCAAGAAACAT 57.301 29.630 0.00 0.00 0.00 2.71
2758 8162 9.177608 CTTTATCACCTCCATAATCAAGAAACA 57.822 33.333 0.00 0.00 0.00 2.83
2759 8163 9.396022 TCTTTATCACCTCCATAATCAAGAAAC 57.604 33.333 0.00 0.00 0.00 2.78
2760 8164 9.618890 CTCTTTATCACCTCCATAATCAAGAAA 57.381 33.333 0.00 0.00 0.00 2.52
2761 8165 8.772250 ACTCTTTATCACCTCCATAATCAAGAA 58.228 33.333 0.00 0.00 0.00 2.52
2762 8166 8.324191 ACTCTTTATCACCTCCATAATCAAGA 57.676 34.615 0.00 0.00 0.00 3.02
2763 8167 8.970859 AACTCTTTATCACCTCCATAATCAAG 57.029 34.615 0.00 0.00 0.00 3.02
2764 8168 7.710907 CGAACTCTTTATCACCTCCATAATCAA 59.289 37.037 0.00 0.00 0.00 2.57
2765 8169 7.210174 CGAACTCTTTATCACCTCCATAATCA 58.790 38.462 0.00 0.00 0.00 2.57
2766 8170 6.647067 CCGAACTCTTTATCACCTCCATAATC 59.353 42.308 0.00 0.00 0.00 1.75
2767 8171 6.525629 CCGAACTCTTTATCACCTCCATAAT 58.474 40.000 0.00 0.00 0.00 1.28
2768 8172 5.684030 GCCGAACTCTTTATCACCTCCATAA 60.684 44.000 0.00 0.00 0.00 1.90
2769 8173 4.202223 GCCGAACTCTTTATCACCTCCATA 60.202 45.833 0.00 0.00 0.00 2.74
2770 8174 3.432326 GCCGAACTCTTTATCACCTCCAT 60.432 47.826 0.00 0.00 0.00 3.41
2771 8175 2.093658 GCCGAACTCTTTATCACCTCCA 60.094 50.000 0.00 0.00 0.00 3.86
2772 8176 2.552031 GCCGAACTCTTTATCACCTCC 58.448 52.381 0.00 0.00 0.00 4.30
2773 8177 2.194271 CGCCGAACTCTTTATCACCTC 58.806 52.381 0.00 0.00 0.00 3.85
2774 8178 1.549170 ACGCCGAACTCTTTATCACCT 59.451 47.619 0.00 0.00 0.00 4.00
2775 8179 2.005971 ACGCCGAACTCTTTATCACC 57.994 50.000 0.00 0.00 0.00 4.02
2776 8180 4.032558 CCTTTACGCCGAACTCTTTATCAC 59.967 45.833 0.00 0.00 0.00 3.06
2777 8181 4.178540 CCTTTACGCCGAACTCTTTATCA 58.821 43.478 0.00 0.00 0.00 2.15
2778 8182 3.554731 CCCTTTACGCCGAACTCTTTATC 59.445 47.826 0.00 0.00 0.00 1.75
2779 8183 3.055602 ACCCTTTACGCCGAACTCTTTAT 60.056 43.478 0.00 0.00 0.00 1.40
2780 8184 2.299867 ACCCTTTACGCCGAACTCTTTA 59.700 45.455 0.00 0.00 0.00 1.85
2781 8185 1.071228 ACCCTTTACGCCGAACTCTTT 59.929 47.619 0.00 0.00 0.00 2.52
2782 8186 0.683412 ACCCTTTACGCCGAACTCTT 59.317 50.000 0.00 0.00 0.00 2.85
2783 8187 0.683412 AACCCTTTACGCCGAACTCT 59.317 50.000 0.00 0.00 0.00 3.24
2784 8188 1.995484 GTAACCCTTTACGCCGAACTC 59.005 52.381 0.00 0.00 0.00 3.01
2785 8189 2.084610 GTAACCCTTTACGCCGAACT 57.915 50.000 0.00 0.00 0.00 3.01
2793 8197 4.719040 CTTGCATCAACGTAACCCTTTAC 58.281 43.478 0.00 0.00 35.17 2.01
2794 8198 3.189702 GCTTGCATCAACGTAACCCTTTA 59.810 43.478 0.00 0.00 0.00 1.85
2795 8199 2.030274 GCTTGCATCAACGTAACCCTTT 60.030 45.455 0.00 0.00 0.00 3.11
2796 8200 1.539827 GCTTGCATCAACGTAACCCTT 59.460 47.619 0.00 0.00 0.00 3.95
2797 8201 1.165270 GCTTGCATCAACGTAACCCT 58.835 50.000 0.00 0.00 0.00 4.34
2798 8202 1.165270 AGCTTGCATCAACGTAACCC 58.835 50.000 0.00 0.00 0.00 4.11
2799 8203 2.989422 AAGCTTGCATCAACGTAACC 57.011 45.000 0.00 0.00 0.00 2.85
2800 8204 5.115021 GTGTTAAAGCTTGCATCAACGTAAC 59.885 40.000 0.00 2.35 0.00 2.50
2801 8205 5.209240 GTGTTAAAGCTTGCATCAACGTAA 58.791 37.500 0.00 0.00 0.00 3.18
2802 8206 4.319911 GGTGTTAAAGCTTGCATCAACGTA 60.320 41.667 0.00 0.00 0.00 3.57
2803 8207 3.550030 GGTGTTAAAGCTTGCATCAACGT 60.550 43.478 0.00 0.00 0.00 3.99
2804 8208 2.979813 GGTGTTAAAGCTTGCATCAACG 59.020 45.455 0.00 0.00 0.00 4.10
2805 8209 4.243007 AGGTGTTAAAGCTTGCATCAAC 57.757 40.909 0.00 0.30 30.45 3.18
2806 8210 5.945784 AGATAGGTGTTAAAGCTTGCATCAA 59.054 36.000 0.00 0.00 37.85 2.57
2807 8211 5.355071 CAGATAGGTGTTAAAGCTTGCATCA 59.645 40.000 0.00 0.00 37.85 3.07
2808 8212 5.586243 TCAGATAGGTGTTAAAGCTTGCATC 59.414 40.000 0.00 0.04 37.85 3.91
2809 8213 5.500234 TCAGATAGGTGTTAAAGCTTGCAT 58.500 37.500 0.00 0.00 37.85 3.96
2810 8214 4.905429 TCAGATAGGTGTTAAAGCTTGCA 58.095 39.130 0.00 0.00 37.85 4.08
2811 8215 5.880054 TTCAGATAGGTGTTAAAGCTTGC 57.120 39.130 0.00 0.00 37.85 4.01
2812 8216 7.335422 AGTCATTCAGATAGGTGTTAAAGCTTG 59.665 37.037 0.00 0.00 37.85 4.01
2813 8217 7.398024 AGTCATTCAGATAGGTGTTAAAGCTT 58.602 34.615 0.00 0.00 37.85 3.74
2814 8218 6.951971 AGTCATTCAGATAGGTGTTAAAGCT 58.048 36.000 0.00 0.00 40.55 3.74
2815 8219 7.010923 CAGAGTCATTCAGATAGGTGTTAAAGC 59.989 40.741 0.00 0.00 0.00 3.51
2816 8220 8.253810 TCAGAGTCATTCAGATAGGTGTTAAAG 58.746 37.037 0.00 0.00 0.00 1.85
2817 8221 8.134202 TCAGAGTCATTCAGATAGGTGTTAAA 57.866 34.615 0.00 0.00 0.00 1.52
2818 8222 7.397476 ACTCAGAGTCATTCAGATAGGTGTTAA 59.603 37.037 0.00 0.00 0.00 2.01
2819 8223 6.892456 ACTCAGAGTCATTCAGATAGGTGTTA 59.108 38.462 0.00 0.00 0.00 2.41
2820 8224 5.719085 ACTCAGAGTCATTCAGATAGGTGTT 59.281 40.000 0.00 0.00 0.00 3.32
2821 8225 5.268387 ACTCAGAGTCATTCAGATAGGTGT 58.732 41.667 0.00 0.00 0.00 4.16
2822 8226 5.850557 ACTCAGAGTCATTCAGATAGGTG 57.149 43.478 0.00 0.00 0.00 4.00
2823 8227 5.534654 GCTACTCAGAGTCATTCAGATAGGT 59.465 44.000 6.27 0.00 0.00 3.08
2824 8228 5.534278 TGCTACTCAGAGTCATTCAGATAGG 59.466 44.000 6.27 0.00 0.00 2.57
2825 8229 6.631971 TGCTACTCAGAGTCATTCAGATAG 57.368 41.667 6.27 0.00 0.00 2.08
2826 8230 7.261325 GTTTGCTACTCAGAGTCATTCAGATA 58.739 38.462 6.27 0.00 0.00 1.98
2827 8231 5.929058 TTGCTACTCAGAGTCATTCAGAT 57.071 39.130 6.27 0.00 0.00 2.90
2828 8232 5.473931 GTTTGCTACTCAGAGTCATTCAGA 58.526 41.667 6.27 0.00 0.00 3.27
2829 8233 4.629200 GGTTTGCTACTCAGAGTCATTCAG 59.371 45.833 6.27 0.00 0.00 3.02
2830 8234 4.569943 GGTTTGCTACTCAGAGTCATTCA 58.430 43.478 6.27 0.00 0.00 2.57
2831 8235 3.614616 CGGTTTGCTACTCAGAGTCATTC 59.385 47.826 6.27 0.00 0.00 2.67
2832 8236 3.589988 CGGTTTGCTACTCAGAGTCATT 58.410 45.455 6.27 0.00 0.00 2.57
2833 8237 2.093973 CCGGTTTGCTACTCAGAGTCAT 60.094 50.000 6.27 0.00 0.00 3.06
2834 8238 1.272490 CCGGTTTGCTACTCAGAGTCA 59.728 52.381 6.27 0.00 0.00 3.41
2835 8239 1.544691 TCCGGTTTGCTACTCAGAGTC 59.455 52.381 6.27 0.00 0.00 3.36
2836 8240 1.629043 TCCGGTTTGCTACTCAGAGT 58.371 50.000 8.50 8.50 0.00 3.24
2837 8241 2.969628 ATCCGGTTTGCTACTCAGAG 57.030 50.000 0.00 0.00 0.00 3.35
2838 8242 2.098607 CGTATCCGGTTTGCTACTCAGA 59.901 50.000 0.00 0.00 0.00 3.27
2839 8243 2.159282 ACGTATCCGGTTTGCTACTCAG 60.159 50.000 0.00 0.00 38.78 3.35
2840 8244 1.820519 ACGTATCCGGTTTGCTACTCA 59.179 47.619 0.00 0.00 38.78 3.41
2841 8245 2.573941 ACGTATCCGGTTTGCTACTC 57.426 50.000 0.00 0.00 38.78 2.59
2842 8246 4.823989 ACTATACGTATCCGGTTTGCTACT 59.176 41.667 12.24 0.00 38.78 2.57
2843 8247 4.913924 CACTATACGTATCCGGTTTGCTAC 59.086 45.833 12.24 0.00 38.78 3.58
2844 8248 4.022935 CCACTATACGTATCCGGTTTGCTA 60.023 45.833 12.24 0.00 38.78 3.49
2845 8249 3.243636 CCACTATACGTATCCGGTTTGCT 60.244 47.826 12.24 0.00 38.78 3.91
2846 8250 3.054878 CCACTATACGTATCCGGTTTGC 58.945 50.000 12.24 0.00 38.78 3.68
2847 8251 4.543692 CTCCACTATACGTATCCGGTTTG 58.456 47.826 12.24 1.75 38.78 2.93
2848 8252 3.005155 GCTCCACTATACGTATCCGGTTT 59.995 47.826 12.24 0.00 38.78 3.27
2849 8253 2.555757 GCTCCACTATACGTATCCGGTT 59.444 50.000 12.24 0.00 38.78 4.44
2850 8254 2.157738 GCTCCACTATACGTATCCGGT 58.842 52.381 12.24 7.10 38.78 5.28
2851 8255 2.156917 TGCTCCACTATACGTATCCGG 58.843 52.381 12.24 11.00 38.78 5.14
2852 8256 3.562505 GTTGCTCCACTATACGTATCCG 58.437 50.000 12.24 7.26 40.83 4.18
2853 8257 3.319972 TGGTTGCTCCACTATACGTATCC 59.680 47.826 12.24 3.58 41.93 2.59
2854 8258 4.579454 TGGTTGCTCCACTATACGTATC 57.421 45.455 12.24 0.00 41.93 2.24
2866 8270 3.026694 AGCTATTCCAAATGGTTGCTCC 58.973 45.455 0.00 0.00 36.34 4.70
2867 8271 3.067320 GGAGCTATTCCAAATGGTTGCTC 59.933 47.826 19.60 19.60 46.01 4.26
2868 8272 3.026694 GGAGCTATTCCAAATGGTTGCT 58.973 45.455 0.00 5.37 46.01 3.91
2869 8273 3.443099 GGAGCTATTCCAAATGGTTGC 57.557 47.619 0.00 0.85 46.01 4.17
2887 8291 1.371183 CTTCCACGCTCCACTTGGA 59.629 57.895 0.00 0.00 44.57 3.53
2888 8292 2.328099 GCTTCCACGCTCCACTTGG 61.328 63.158 0.00 0.00 39.07 3.61
2889 8293 1.572085 CTGCTTCCACGCTCCACTTG 61.572 60.000 0.00 0.00 0.00 3.16
2890 8294 1.302033 CTGCTTCCACGCTCCACTT 60.302 57.895 0.00 0.00 0.00 3.16
2891 8295 1.185618 TACTGCTTCCACGCTCCACT 61.186 55.000 0.00 0.00 0.00 4.00
2892 8296 0.108138 ATACTGCTTCCACGCTCCAC 60.108 55.000 0.00 0.00 0.00 4.02
2893 8297 0.613260 AATACTGCTTCCACGCTCCA 59.387 50.000 0.00 0.00 0.00 3.86
2894 8298 1.739067 AAATACTGCTTCCACGCTCC 58.261 50.000 0.00 0.00 0.00 4.70
2895 8299 3.259064 TGTAAATACTGCTTCCACGCTC 58.741 45.455 0.00 0.00 0.00 5.03
2896 8300 3.328382 TGTAAATACTGCTTCCACGCT 57.672 42.857 0.00 0.00 0.00 5.07
2897 8301 4.616181 ATTGTAAATACTGCTTCCACGC 57.384 40.909 0.00 0.00 0.00 5.34
2898 8302 7.345192 GTCATATTGTAAATACTGCTTCCACG 58.655 38.462 0.00 0.00 0.00 4.94
2899 8303 7.499232 AGGTCATATTGTAAATACTGCTTCCAC 59.501 37.037 0.00 0.00 0.00 4.02
2900 8304 7.573710 AGGTCATATTGTAAATACTGCTTCCA 58.426 34.615 0.00 0.00 0.00 3.53
2901 8305 9.209175 CTAGGTCATATTGTAAATACTGCTTCC 57.791 37.037 0.00 0.00 0.00 3.46
2902 8306 9.982651 TCTAGGTCATATTGTAAATACTGCTTC 57.017 33.333 0.00 0.00 0.00 3.86
2910 8314 9.950680 CGCAAATTTCTAGGTCATATTGTAAAT 57.049 29.630 0.00 0.00 0.00 1.40
2911 8315 9.168451 TCGCAAATTTCTAGGTCATATTGTAAA 57.832 29.630 0.00 0.00 0.00 2.01
2912 8316 8.725405 TCGCAAATTTCTAGGTCATATTGTAA 57.275 30.769 0.00 0.00 0.00 2.41
2913 8317 8.725405 TTCGCAAATTTCTAGGTCATATTGTA 57.275 30.769 0.00 0.00 0.00 2.41
2914 8318 7.336931 ACTTCGCAAATTTCTAGGTCATATTGT 59.663 33.333 0.00 0.00 0.00 2.71
2915 8319 7.697691 ACTTCGCAAATTTCTAGGTCATATTG 58.302 34.615 0.00 0.00 0.00 1.90
2916 8320 7.865706 ACTTCGCAAATTTCTAGGTCATATT 57.134 32.000 0.00 0.00 0.00 1.28
2917 8321 7.985184 TGTACTTCGCAAATTTCTAGGTCATAT 59.015 33.333 0.00 0.00 0.00 1.78
2918 8322 7.324935 TGTACTTCGCAAATTTCTAGGTCATA 58.675 34.615 0.00 0.00 0.00 2.15
2919 8323 6.170506 TGTACTTCGCAAATTTCTAGGTCAT 58.829 36.000 0.00 0.00 0.00 3.06
2920 8324 5.543714 TGTACTTCGCAAATTTCTAGGTCA 58.456 37.500 0.00 0.00 0.00 4.02
2921 8325 6.663944 ATGTACTTCGCAAATTTCTAGGTC 57.336 37.500 0.00 0.00 0.00 3.85
2922 8326 6.255020 CGTATGTACTTCGCAAATTTCTAGGT 59.745 38.462 0.00 0.00 0.00 3.08
2923 8327 6.292168 CCGTATGTACTTCGCAAATTTCTAGG 60.292 42.308 0.00 0.00 0.00 3.02
2924 8328 6.474427 TCCGTATGTACTTCGCAAATTTCTAG 59.526 38.462 0.00 0.00 0.00 2.43
2925 8329 6.331845 TCCGTATGTACTTCGCAAATTTCTA 58.668 36.000 0.00 0.00 0.00 2.10
2926 8330 5.172934 TCCGTATGTACTTCGCAAATTTCT 58.827 37.500 0.00 0.00 0.00 2.52
2927 8331 5.459110 TCCGTATGTACTTCGCAAATTTC 57.541 39.130 0.00 0.00 0.00 2.17
2928 8332 5.815740 AGATCCGTATGTACTTCGCAAATTT 59.184 36.000 0.00 0.00 0.00 1.82
2929 8333 5.234329 CAGATCCGTATGTACTTCGCAAATT 59.766 40.000 0.00 0.00 0.00 1.82
2930 8334 4.745125 CAGATCCGTATGTACTTCGCAAAT 59.255 41.667 0.00 0.00 0.00 2.32
2931 8335 4.109766 CAGATCCGTATGTACTTCGCAAA 58.890 43.478 0.00 0.00 0.00 3.68
2932 8336 3.379057 TCAGATCCGTATGTACTTCGCAA 59.621 43.478 0.00 0.00 0.00 4.85
2933 8337 2.946990 TCAGATCCGTATGTACTTCGCA 59.053 45.455 0.00 0.00 0.00 5.10
2934 8338 3.620929 TCAGATCCGTATGTACTTCGC 57.379 47.619 0.00 0.00 0.00 4.70
2935 8339 5.520632 ACATTCAGATCCGTATGTACTTCG 58.479 41.667 0.00 0.00 29.93 3.79
2936 8340 6.292381 GCAACATTCAGATCCGTATGTACTTC 60.292 42.308 2.06 0.00 31.40 3.01
2937 8341 5.523916 GCAACATTCAGATCCGTATGTACTT 59.476 40.000 2.06 0.00 31.40 2.24
2938 8342 5.050490 GCAACATTCAGATCCGTATGTACT 58.950 41.667 2.06 0.00 31.40 2.73
2939 8343 4.808895 TGCAACATTCAGATCCGTATGTAC 59.191 41.667 2.06 0.00 31.40 2.90
2940 8344 5.017294 TGCAACATTCAGATCCGTATGTA 57.983 39.130 2.06 0.00 31.40 2.29
2941 8345 3.872696 TGCAACATTCAGATCCGTATGT 58.127 40.909 0.00 0.00 32.89 2.29
2942 8346 4.122046 TCTGCAACATTCAGATCCGTATG 58.878 43.478 0.00 0.00 35.81 2.39
2943 8347 4.406648 TCTGCAACATTCAGATCCGTAT 57.593 40.909 0.00 0.00 35.81 3.06
2944 8348 3.885724 TCTGCAACATTCAGATCCGTA 57.114 42.857 0.00 0.00 35.81 4.02
2945 8349 2.768253 TCTGCAACATTCAGATCCGT 57.232 45.000 0.00 0.00 35.81 4.69
2950 8354 2.743664 CAACGGATCTGCAACATTCAGA 59.256 45.455 0.00 0.00 43.79 3.27
2951 8355 2.743664 TCAACGGATCTGCAACATTCAG 59.256 45.455 0.00 0.00 0.00 3.02
2952 8356 2.483877 GTCAACGGATCTGCAACATTCA 59.516 45.455 0.00 0.00 0.00 2.57
2953 8357 2.744202 AGTCAACGGATCTGCAACATTC 59.256 45.455 0.00 0.00 0.00 2.67
2954 8358 2.485426 CAGTCAACGGATCTGCAACATT 59.515 45.455 0.00 0.00 0.00 2.71
2955 8359 2.079158 CAGTCAACGGATCTGCAACAT 58.921 47.619 0.00 0.00 0.00 2.71
2956 8360 1.069978 TCAGTCAACGGATCTGCAACA 59.930 47.619 0.00 0.00 0.00 3.33
2957 8361 1.795768 TCAGTCAACGGATCTGCAAC 58.204 50.000 0.00 0.00 0.00 4.17
2958 8362 2.542020 TTCAGTCAACGGATCTGCAA 57.458 45.000 0.00 0.00 0.00 4.08
2959 8363 2.143122 GTTTCAGTCAACGGATCTGCA 58.857 47.619 0.00 0.00 0.00 4.41
2960 8364 1.464997 GGTTTCAGTCAACGGATCTGC 59.535 52.381 0.00 0.00 0.00 4.26
2961 8365 2.996621 GAGGTTTCAGTCAACGGATCTG 59.003 50.000 0.00 0.00 0.00 2.90
2962 8366 2.900546 AGAGGTTTCAGTCAACGGATCT 59.099 45.455 0.00 0.00 0.00 2.75
2963 8367 3.056465 AGAGAGGTTTCAGTCAACGGATC 60.056 47.826 0.00 0.00 0.00 3.36
2964 8368 2.900546 AGAGAGGTTTCAGTCAACGGAT 59.099 45.455 0.00 0.00 0.00 4.18
2965 8369 2.296471 GAGAGAGGTTTCAGTCAACGGA 59.704 50.000 0.00 0.00 0.00 4.69
2966 8370 2.035961 TGAGAGAGGTTTCAGTCAACGG 59.964 50.000 0.00 0.00 0.00 4.44
2967 8371 3.053455 GTGAGAGAGGTTTCAGTCAACG 58.947 50.000 0.00 0.00 0.00 4.10
2968 8372 4.060038 TGTGAGAGAGGTTTCAGTCAAC 57.940 45.455 0.00 0.00 0.00 3.18
2969 8373 4.697514 CTTGTGAGAGAGGTTTCAGTCAA 58.302 43.478 0.00 0.00 0.00 3.18
2970 8374 3.493350 GCTTGTGAGAGAGGTTTCAGTCA 60.493 47.826 0.00 0.00 0.00 3.41
2971 8375 3.063485 GCTTGTGAGAGAGGTTTCAGTC 58.937 50.000 0.00 0.00 0.00 3.51
2972 8376 2.435805 TGCTTGTGAGAGAGGTTTCAGT 59.564 45.455 0.00 0.00 0.00 3.41
2973 8377 3.117491 TGCTTGTGAGAGAGGTTTCAG 57.883 47.619 0.00 0.00 0.00 3.02
2974 8378 3.558931 TTGCTTGTGAGAGAGGTTTCA 57.441 42.857 0.00 0.00 0.00 2.69
2975 8379 4.096382 TGTTTTGCTTGTGAGAGAGGTTTC 59.904 41.667 0.00 0.00 0.00 2.78
2976 8380 4.016444 TGTTTTGCTTGTGAGAGAGGTTT 58.984 39.130 0.00 0.00 0.00 3.27
2977 8381 3.620488 TGTTTTGCTTGTGAGAGAGGTT 58.380 40.909 0.00 0.00 0.00 3.50
2978 8382 3.281727 TGTTTTGCTTGTGAGAGAGGT 57.718 42.857 0.00 0.00 0.00 3.85
2979 8383 3.817084 TCATGTTTTGCTTGTGAGAGAGG 59.183 43.478 0.00 0.00 0.00 3.69
2980 8384 5.180680 TGATCATGTTTTGCTTGTGAGAGAG 59.819 40.000 0.00 0.00 0.00 3.20
2981 8385 5.065235 TGATCATGTTTTGCTTGTGAGAGA 58.935 37.500 0.00 0.00 0.00 3.10
2982 8386 5.366829 TGATCATGTTTTGCTTGTGAGAG 57.633 39.130 0.00 0.00 0.00 3.20
2983 8387 5.771153 TTGATCATGTTTTGCTTGTGAGA 57.229 34.783 0.00 0.00 0.00 3.27
2984 8388 5.176223 GGTTTGATCATGTTTTGCTTGTGAG 59.824 40.000 0.00 0.00 0.00 3.51
2985 8389 5.049167 GGTTTGATCATGTTTTGCTTGTGA 58.951 37.500 0.00 0.00 0.00 3.58
2986 8390 4.211794 GGGTTTGATCATGTTTTGCTTGTG 59.788 41.667 0.00 0.00 0.00 3.33
2987 8391 4.379652 GGGTTTGATCATGTTTTGCTTGT 58.620 39.130 0.00 0.00 0.00 3.16
2988 8392 3.747529 GGGGTTTGATCATGTTTTGCTTG 59.252 43.478 0.00 0.00 0.00 4.01
2989 8393 3.647590 AGGGGTTTGATCATGTTTTGCTT 59.352 39.130 0.00 0.00 0.00 3.91
2990 8394 3.007182 CAGGGGTTTGATCATGTTTTGCT 59.993 43.478 0.00 0.00 0.00 3.91
2991 8395 3.006752 TCAGGGGTTTGATCATGTTTTGC 59.993 43.478 0.00 0.00 0.00 3.68
2992 8396 4.870123 TCAGGGGTTTGATCATGTTTTG 57.130 40.909 0.00 0.00 0.00 2.44
2993 8397 4.901250 AGTTCAGGGGTTTGATCATGTTTT 59.099 37.500 0.00 0.00 0.00 2.43
2994 8398 4.482990 AGTTCAGGGGTTTGATCATGTTT 58.517 39.130 0.00 0.00 0.00 2.83
2995 8399 4.082125 GAGTTCAGGGGTTTGATCATGTT 58.918 43.478 0.00 0.00 0.00 2.71
2996 8400 3.074390 TGAGTTCAGGGGTTTGATCATGT 59.926 43.478 0.00 0.00 0.00 3.21
2997 8401 3.689347 TGAGTTCAGGGGTTTGATCATG 58.311 45.455 0.00 0.00 0.00 3.07
2998 8402 4.598036 ATGAGTTCAGGGGTTTGATCAT 57.402 40.909 0.00 0.00 0.00 2.45
2999 8403 4.081406 CAATGAGTTCAGGGGTTTGATCA 58.919 43.478 0.00 0.00 0.00 2.92
3000 8404 4.335416 TCAATGAGTTCAGGGGTTTGATC 58.665 43.478 0.00 0.00 0.00 2.92
3001 8405 4.202609 ACTCAATGAGTTCAGGGGTTTGAT 60.203 41.667 10.56 0.00 40.28 2.57
3002 8406 3.138283 ACTCAATGAGTTCAGGGGTTTGA 59.862 43.478 10.56 0.00 40.28 2.69
3003 8407 3.490348 ACTCAATGAGTTCAGGGGTTTG 58.510 45.455 10.56 0.00 40.28 2.93
3004 8408 3.395941 AGACTCAATGAGTTCAGGGGTTT 59.604 43.478 17.79 0.00 43.53 3.27
3005 8409 2.982488 AGACTCAATGAGTTCAGGGGTT 59.018 45.455 17.79 0.00 43.53 4.11
3006 8410 2.625639 AGACTCAATGAGTTCAGGGGT 58.374 47.619 17.79 0.00 43.53 4.95
3007 8411 3.710209 AAGACTCAATGAGTTCAGGGG 57.290 47.619 17.79 0.00 43.53 4.79
3008 8412 6.314896 GTGATTAAGACTCAATGAGTTCAGGG 59.685 42.308 17.79 0.00 43.53 4.45
3009 8413 6.875726 TGTGATTAAGACTCAATGAGTTCAGG 59.124 38.462 17.79 0.00 43.53 3.86
3010 8414 7.895975 TGTGATTAAGACTCAATGAGTTCAG 57.104 36.000 17.79 0.00 43.53 3.02
3011 8415 8.096414 TCATGTGATTAAGACTCAATGAGTTCA 58.904 33.333 17.79 13.29 43.53 3.18
3012 8416 8.484641 TCATGTGATTAAGACTCAATGAGTTC 57.515 34.615 17.79 10.82 43.53 3.01
3013 8417 9.107177 GATCATGTGATTAAGACTCAATGAGTT 57.893 33.333 17.79 5.07 37.71 3.01
3014 8418 8.262933 TGATCATGTGATTAAGACTCAATGAGT 58.737 33.333 16.70 16.70 39.20 3.41
3015 8419 8.658499 TGATCATGTGATTAAGACTCAATGAG 57.342 34.615 8.98 8.98 34.37 2.90
3016 8420 9.052759 CATGATCATGTGATTAAGACTCAATGA 57.947 33.333 24.87 0.00 34.37 2.57
3032 8436 8.314021 TCACTAAACTAGTTCACATGATCATGT 58.686 33.333 31.28 31.28 44.10 3.21
3033 8437 8.598924 GTCACTAAACTAGTTCACATGATCATG 58.401 37.037 29.95 29.95 39.77 3.07
3034 8438 8.314021 TGTCACTAAACTAGTTCACATGATCAT 58.686 33.333 8.95 1.18 36.76 2.45
3035 8439 7.598869 GTGTCACTAAACTAGTTCACATGATCA 59.401 37.037 8.95 0.00 39.11 2.92
3036 8440 7.815068 AGTGTCACTAAACTAGTTCACATGATC 59.185 37.037 19.26 12.93 40.43 2.92
3037 8441 7.671302 AGTGTCACTAAACTAGTTCACATGAT 58.329 34.615 19.26 3.09 40.43 2.45
3038 8442 7.050970 AGTGTCACTAAACTAGTTCACATGA 57.949 36.000 19.26 13.53 40.43 3.07
3039 8443 8.454293 CTAGTGTCACTAAACTAGTTCACATG 57.546 38.462 19.26 11.91 40.58 3.21
3049 8453 9.530633 CAAAGAGTTTACTAGTGTCACTAAACT 57.469 33.333 23.32 23.32 37.28 2.66
3050 8454 8.762426 CCAAAGAGTTTACTAGTGTCACTAAAC 58.238 37.037 16.91 16.91 29.00 2.01
3051 8455 8.698210 TCCAAAGAGTTTACTAGTGTCACTAAA 58.302 33.333 13.63 4.91 29.00 1.85
3052 8456 8.241497 TCCAAAGAGTTTACTAGTGTCACTAA 57.759 34.615 13.63 0.00 29.00 2.24
3053 8457 7.828508 TCCAAAGAGTTTACTAGTGTCACTA 57.171 36.000 12.16 12.16 0.00 2.74
3054 8458 6.726490 TCCAAAGAGTTTACTAGTGTCACT 57.274 37.500 10.99 10.99 0.00 3.41
3055 8459 6.929606 ACATCCAAAGAGTTTACTAGTGTCAC 59.070 38.462 5.39 0.00 0.00 3.67
3056 8460 7.062749 ACATCCAAAGAGTTTACTAGTGTCA 57.937 36.000 5.39 0.00 0.00 3.58
3057 8461 7.964604 AACATCCAAAGAGTTTACTAGTGTC 57.035 36.000 5.39 0.00 0.00 3.67
3058 8462 8.648693 ACTAACATCCAAAGAGTTTACTAGTGT 58.351 33.333 5.39 0.00 0.00 3.55
3059 8463 9.141400 GACTAACATCCAAAGAGTTTACTAGTG 57.859 37.037 5.39 0.00 0.00 2.74
3060 8464 8.867097 TGACTAACATCCAAAGAGTTTACTAGT 58.133 33.333 0.00 0.00 0.00 2.57
3061 8465 9.141400 GTGACTAACATCCAAAGAGTTTACTAG 57.859 37.037 0.00 0.00 0.00 2.57
3062 8466 8.644216 TGTGACTAACATCCAAAGAGTTTACTA 58.356 33.333 0.00 0.00 32.36 1.82
3063 8467 7.506114 TGTGACTAACATCCAAAGAGTTTACT 58.494 34.615 0.00 0.00 32.36 2.24
3064 8468 7.724305 TGTGACTAACATCCAAAGAGTTTAC 57.276 36.000 0.00 0.00 32.36 2.01
3078 8482 2.760634 ACATCGCCATGTGACTAACA 57.239 45.000 0.00 0.00 42.05 2.41
3086 8490 1.762370 TGATAGGTCACATCGCCATGT 59.238 47.619 0.00 0.00 44.72 3.21
3087 8491 2.224137 ACTGATAGGTCACATCGCCATG 60.224 50.000 0.00 0.00 35.92 3.66
3088 8492 2.042464 ACTGATAGGTCACATCGCCAT 58.958 47.619 0.00 0.00 0.00 4.40
3089 8493 1.136891 CACTGATAGGTCACATCGCCA 59.863 52.381 0.00 0.00 0.00 5.69
3090 8494 1.137086 ACACTGATAGGTCACATCGCC 59.863 52.381 0.00 0.00 0.00 5.54
3091 8495 2.586258 ACACTGATAGGTCACATCGC 57.414 50.000 0.00 0.00 0.00 4.58
3092 8496 6.199154 GTGATTAACACTGATAGGTCACATCG 59.801 42.308 0.00 0.00 45.13 3.84
3093 8497 7.470289 GTGATTAACACTGATAGGTCACATC 57.530 40.000 0.00 0.00 45.13 3.06
3116 8520 3.827008 ATCTAGTTCACATCGCCATGT 57.173 42.857 0.00 0.00 44.72 3.21
3117 8521 6.424812 TCAATAATCTAGTTCACATCGCCATG 59.575 38.462 0.00 0.00 35.92 3.66
3118 8522 6.425114 GTCAATAATCTAGTTCACATCGCCAT 59.575 38.462 0.00 0.00 0.00 4.40
3119 8523 5.753438 GTCAATAATCTAGTTCACATCGCCA 59.247 40.000 0.00 0.00 0.00 5.69
3120 8524 5.986135 AGTCAATAATCTAGTTCACATCGCC 59.014 40.000 0.00 0.00 0.00 5.54
3121 8525 6.920758 AGAGTCAATAATCTAGTTCACATCGC 59.079 38.462 0.00 0.00 0.00 4.58
3122 8526 9.605955 CTAGAGTCAATAATCTAGTTCACATCG 57.394 37.037 0.00 0.00 40.01 3.84
3131 8535 7.651304 CCACTTGCACTAGAGTCAATAATCTAG 59.349 40.741 8.00 8.00 46.90 2.43
3132 8536 7.417911 CCCACTTGCACTAGAGTCAATAATCTA 60.418 40.741 0.00 0.00 0.00 1.98
3133 8537 6.344500 CCACTTGCACTAGAGTCAATAATCT 58.656 40.000 0.00 0.00 0.00 2.40
3134 8538 5.525378 CCCACTTGCACTAGAGTCAATAATC 59.475 44.000 0.00 0.00 0.00 1.75
3135 8539 5.189736 TCCCACTTGCACTAGAGTCAATAAT 59.810 40.000 0.00 0.00 0.00 1.28
3136 8540 4.530553 TCCCACTTGCACTAGAGTCAATAA 59.469 41.667 0.00 0.00 0.00 1.40
3137 8541 4.093743 TCCCACTTGCACTAGAGTCAATA 58.906 43.478 0.00 0.00 0.00 1.90
3138 8542 2.906389 TCCCACTTGCACTAGAGTCAAT 59.094 45.455 0.00 0.00 0.00 2.57
3139 8543 2.300152 CTCCCACTTGCACTAGAGTCAA 59.700 50.000 0.00 0.00 0.00 3.18
3140 8544 1.895798 CTCCCACTTGCACTAGAGTCA 59.104 52.381 0.00 0.00 0.00 3.41
3141 8545 2.094442 GTCTCCCACTTGCACTAGAGTC 60.094 54.545 0.00 0.00 0.00 3.36
3142 8546 1.896465 GTCTCCCACTTGCACTAGAGT 59.104 52.381 0.00 0.00 0.00 3.24
3143 8547 2.094286 CAGTCTCCCACTTGCACTAGAG 60.094 54.545 0.00 0.00 30.26 2.43
3144 8548 1.895798 CAGTCTCCCACTTGCACTAGA 59.104 52.381 0.00 0.00 30.26 2.43
3145 8549 1.620819 ACAGTCTCCCACTTGCACTAG 59.379 52.381 0.00 0.00 30.26 2.57
3146 8550 1.717032 ACAGTCTCCCACTTGCACTA 58.283 50.000 0.00 0.00 30.26 2.74
3147 8551 0.839946 AACAGTCTCCCACTTGCACT 59.160 50.000 0.00 0.00 30.26 4.40
3148 8552 0.947244 CAACAGTCTCCCACTTGCAC 59.053 55.000 0.00 0.00 30.26 4.57
3149 8553 0.179020 CCAACAGTCTCCCACTTGCA 60.179 55.000 0.00 0.00 30.26 4.08
3150 8554 0.108585 TCCAACAGTCTCCCACTTGC 59.891 55.000 0.00 0.00 30.26 4.01
3151 8555 2.638480 TTCCAACAGTCTCCCACTTG 57.362 50.000 0.00 0.00 30.26 3.16
3152 8556 3.884037 ATTTCCAACAGTCTCCCACTT 57.116 42.857 0.00 0.00 30.26 3.16
3153 8557 4.848357 CATATTTCCAACAGTCTCCCACT 58.152 43.478 0.00 0.00 34.67 4.00
3154 8558 3.378427 GCATATTTCCAACAGTCTCCCAC 59.622 47.826 0.00 0.00 0.00 4.61
3155 8559 3.620488 GCATATTTCCAACAGTCTCCCA 58.380 45.455 0.00 0.00 0.00 4.37
3156 8560 2.952310 GGCATATTTCCAACAGTCTCCC 59.048 50.000 0.00 0.00 0.00 4.30
3157 8561 2.952310 GGGCATATTTCCAACAGTCTCC 59.048 50.000 0.00 0.00 0.00 3.71
3158 8562 3.891049 AGGGCATATTTCCAACAGTCTC 58.109 45.455 0.00 0.00 0.00 3.36
3159 8563 4.721776 TCTAGGGCATATTTCCAACAGTCT 59.278 41.667 0.00 0.00 0.00 3.24
3160 8564 5.036117 TCTAGGGCATATTTCCAACAGTC 57.964 43.478 0.00 0.00 0.00 3.51
3161 8565 4.141390 CCTCTAGGGCATATTTCCAACAGT 60.141 45.833 0.00 0.00 0.00 3.55
3162 8566 4.392940 CCTCTAGGGCATATTTCCAACAG 58.607 47.826 0.00 0.00 0.00 3.16
3163 8567 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.