Multiple sequence alignment - TraesCS7B01G104700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G104700 chr7B 100.000 3035 0 0 1 3035 120793096 120790062 0.000000e+00 5605
1 TraesCS7B01G104700 chr7B 100.000 274 0 0 3397 3670 120789700 120789427 1.180000e-139 507
2 TraesCS7B01G104700 chr7B 97.378 267 7 0 516 782 372681193 372681459 4.320000e-124 455
3 TraesCS7B01G104700 chr7B 80.952 315 49 8 196 505 748956715 748956407 4.740000e-59 239
4 TraesCS7B01G104700 chr7B 79.091 330 55 10 196 519 292830410 292830731 7.980000e-52 215
5 TraesCS7B01G104700 chr7B 84.559 136 20 1 384 519 651186581 651186447 2.300000e-27 134
6 TraesCS7B01G104700 chr7D 93.208 1811 84 17 942 2746 160015691 160013914 0.000000e+00 2627
7 TraesCS7B01G104700 chr7A 91.991 1823 77 32 935 2743 158335279 158337046 0.000000e+00 2494
8 TraesCS7B01G104700 chr7A 94.737 76 4 0 778 853 108223394 108223469 6.440000e-23 119
9 TraesCS7B01G104700 chr2B 97.495 519 13 0 1 519 138994884 138994366 0.000000e+00 887
10 TraesCS7B01G104700 chr2B 97.110 519 14 1 1 519 138996160 138996677 0.000000e+00 874
11 TraesCS7B01G104700 chr2B 98.611 72 1 0 778 849 138996676 138996747 1.070000e-25 128
12 TraesCS7B01G104700 chr2B 97.222 72 2 0 778 849 138994367 138994296 4.980000e-24 122
13 TraesCS7B01G104700 chr5D 80.648 987 148 28 1712 2681 469271655 469272615 0.000000e+00 725
14 TraesCS7B01G104700 chr5D 79.138 1021 169 30 1676 2674 469236087 469237085 0.000000e+00 665
15 TraesCS7B01G104700 chr5D 79.514 864 132 26 1831 2674 469242851 469243689 1.140000e-159 573
16 TraesCS7B01G104700 chr5D 84.286 490 63 11 997 1476 469284697 469285182 2.000000e-127 466
17 TraesCS7B01G104700 chr5D 79.482 502 73 15 996 1474 469241883 469242377 2.730000e-86 329
18 TraesCS7B01G104700 chr5D 79.359 499 73 10 999 1476 469269538 469270027 1.270000e-84 324
19 TraesCS7B01G104700 chr5D 78.503 521 69 20 996 1476 469235386 469235903 5.960000e-78 302
20 TraesCS7B01G104700 chr5D 82.596 339 51 5 2310 2648 469285941 469286271 3.580000e-75 292
21 TraesCS7B01G104700 chr5D 85.027 187 23 3 319 502 260690147 260689963 6.260000e-43 185
22 TraesCS7B01G104700 chr5B 80.446 987 149 30 1712 2681 576245117 576246076 0.000000e+00 713
23 TraesCS7B01G104700 chr5B 77.196 1013 197 27 1676 2674 576214226 576215218 8.900000e-156 560
24 TraesCS7B01G104700 chr5B 96.727 275 7 2 3397 3670 147472028 147472301 1.200000e-124 457
25 TraesCS7B01G104700 chr5B 96.727 275 7 2 3397 3670 548070053 548069780 1.200000e-124 457
26 TraesCS7B01G104700 chr5B 97.026 269 8 0 514 782 446205379 446205647 1.550000e-123 453
27 TraesCS7B01G104700 chr5B 97.368 266 7 0 515 780 517413625 517413890 1.550000e-123 453
28 TraesCS7B01G104700 chr5B 95.714 280 9 3 502 780 523067683 523067960 7.230000e-122 448
29 TraesCS7B01G104700 chr5B 82.961 493 64 17 997 1476 576256553 576257038 9.420000e-116 427
30 TraesCS7B01G104700 chr5B 82.903 310 46 6 996 1301 576221453 576221759 4.670000e-69 272
31 TraesCS7B01G104700 chr4D 90.824 534 32 4 1 519 215144087 215144618 0.000000e+00 699
32 TraesCS7B01G104700 chr5A 79.067 1008 165 31 1680 2674 589337398 589338372 0.000000e+00 651
33 TraesCS7B01G104700 chr5A 79.448 978 148 30 1712 2673 589372693 589373633 0.000000e+00 643
34 TraesCS7B01G104700 chr5A 96.727 275 7 2 3397 3670 675294264 675294537 1.200000e-124 457
35 TraesCS7B01G104700 chr5A 82.341 504 59 18 997 1476 589579101 589579598 9.490000e-111 411
36 TraesCS7B01G104700 chr5A 79.234 496 76 12 999 1476 589366366 589366852 1.640000e-83 320
37 TraesCS7B01G104700 chr5A 78.156 499 77 15 999 1475 589334672 589335160 4.640000e-74 289
38 TraesCS7B01G104700 chr5A 96.053 76 2 1 778 852 675421777 675421852 4.980000e-24 122
39 TraesCS7B01G104700 chr6D 78.556 942 167 29 1669 2594 208686 209608 4.080000e-164 588
40 TraesCS7B01G104700 chr6D 83.200 125 15 3 396 519 82470207 82470326 3.870000e-20 110
41 TraesCS7B01G104700 chr4A 97.455 275 6 1 3397 3670 715298803 715299077 5.550000e-128 468
42 TraesCS7B01G104700 chr4A 96.727 275 7 2 3397 3670 543415644 543415917 1.200000e-124 457
43 TraesCS7B01G104700 chr4A 80.449 312 45 6 203 505 636219281 636219585 1.330000e-54 224
44 TraesCS7B01G104700 chrUn 97.091 275 7 1 3397 3670 171296055 171296329 2.580000e-126 462
45 TraesCS7B01G104700 chrUn 80.952 315 49 8 196 505 216084746 216085054 4.740000e-59 239
46 TraesCS7B01G104700 chrUn 80.952 315 49 8 196 505 244197353 244197045 4.740000e-59 239
47 TraesCS7B01G104700 chr6A 97.091 275 7 1 3397 3670 134944359 134944633 2.580000e-126 462
48 TraesCS7B01G104700 chr6A 95.890 73 2 1 781 852 577837100 577837028 2.320000e-22 117
49 TraesCS7B01G104700 chr1A 96.727 275 7 2 3397 3670 50135454 50135727 1.200000e-124 457
50 TraesCS7B01G104700 chr1A 96.727 275 7 2 3397 3670 516724048 516724321 1.200000e-124 457
51 TraesCS7B01G104700 chr6B 97.719 263 6 0 517 779 556846393 556846131 1.550000e-123 453
52 TraesCS7B01G104700 chr2A 97.719 263 6 0 517 779 438519182 438519444 1.550000e-123 453
53 TraesCS7B01G104700 chr2A 96.104 77 2 1 778 853 392420543 392420619 1.380000e-24 124
54 TraesCS7B01G104700 chr4B 97.026 269 7 1 515 782 194621690 194621422 5.590000e-123 451
55 TraesCS7B01G104700 chr4B 96.350 274 8 1 507 780 228594299 228594570 2.010000e-122 449
56 TraesCS7B01G104700 chr4B 96.337 273 8 2 508 779 559129373 559129644 7.230000e-122 448
57 TraesCS7B01G104700 chr4B 81.388 317 43 8 196 505 255359052 255358745 1.020000e-60 244
58 TraesCS7B01G104700 chr2D 97.222 72 2 0 781 852 589476587 589476516 4.980000e-24 122
59 TraesCS7B01G104700 chr2D 95.946 74 2 1 781 853 81159564 81159491 6.440000e-23 119
60 TraesCS7B01G104700 chr3A 94.872 78 3 1 778 854 107316336 107316413 1.790000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G104700 chr7B 120789427 120793096 3669 True 3056.0 5605 100.0000 1 3670 2 chr7B.!!$R3 3669
1 TraesCS7B01G104700 chr7D 160013914 160015691 1777 True 2627.0 2627 93.2080 942 2746 1 chr7D.!!$R1 1804
2 TraesCS7B01G104700 chr7A 158335279 158337046 1767 False 2494.0 2494 91.9910 935 2743 1 chr7A.!!$F2 1808
3 TraesCS7B01G104700 chr2B 138994296 138994884 588 True 504.5 887 97.3585 1 849 2 chr2B.!!$R1 848
4 TraesCS7B01G104700 chr2B 138996160 138996747 587 False 501.0 874 97.8605 1 849 2 chr2B.!!$F1 848
5 TraesCS7B01G104700 chr5D 469269538 469272615 3077 False 524.5 725 80.0035 999 2681 2 chr5D.!!$F3 1682
6 TraesCS7B01G104700 chr5D 469235386 469237085 1699 False 483.5 665 78.8205 996 2674 2 chr5D.!!$F1 1678
7 TraesCS7B01G104700 chr5D 469241883 469243689 1806 False 451.0 573 79.4980 996 2674 2 chr5D.!!$F2 1678
8 TraesCS7B01G104700 chr5D 469284697 469286271 1574 False 379.0 466 83.4410 997 2648 2 chr5D.!!$F4 1651
9 TraesCS7B01G104700 chr5B 576245117 576246076 959 False 713.0 713 80.4460 1712 2681 1 chr5B.!!$F7 969
10 TraesCS7B01G104700 chr5B 576214226 576215218 992 False 560.0 560 77.1960 1676 2674 1 chr5B.!!$F5 998
11 TraesCS7B01G104700 chr4D 215144087 215144618 531 False 699.0 699 90.8240 1 519 1 chr4D.!!$F1 518
12 TraesCS7B01G104700 chr5A 589372693 589373633 940 False 643.0 643 79.4480 1712 2673 1 chr5A.!!$F2 961
13 TraesCS7B01G104700 chr5A 589334672 589338372 3700 False 470.0 651 78.6115 999 2674 2 chr5A.!!$F6 1675
14 TraesCS7B01G104700 chr6D 208686 209608 922 False 588.0 588 78.5560 1669 2594 1 chr6D.!!$F1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 933 0.02811 GGCATTGTTCCGATCGAAGC 59.972 55.0 18.66 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2746 5754 0.034574 TGACAGCCGGGCATATTTGT 60.035 50.0 23.09 16.16 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 120 0.966920 ACAAGCACACGTACCTAGCT 59.033 50.000 0.00 0.00 37.08 3.32
375 391 1.837439 CATGGGTGCCTACTTCCTACA 59.163 52.381 0.00 0.00 0.00 2.74
382 398 2.225293 TGCCTACTTCCTACACAGACCT 60.225 50.000 0.00 0.00 0.00 3.85
463 480 0.102300 AAAACTGCAGTTCCGCCAAC 59.898 50.000 31.20 0.00 37.25 3.77
522 539 6.852664 CCAAACAGGTCATTGTAAATACTCC 58.147 40.000 0.00 0.00 0.00 3.85
523 540 6.127730 CCAAACAGGTCATTGTAAATACTCCC 60.128 42.308 0.00 0.00 0.00 4.30
524 541 6.388619 AACAGGTCATTGTAAATACTCCCT 57.611 37.500 0.00 0.00 0.00 4.20
525 542 5.990668 ACAGGTCATTGTAAATACTCCCTC 58.009 41.667 0.00 0.00 0.00 4.30
526 543 5.104485 ACAGGTCATTGTAAATACTCCCTCC 60.104 44.000 0.00 0.00 0.00 4.30
527 544 5.036916 AGGTCATTGTAAATACTCCCTCCA 58.963 41.667 0.00 0.00 0.00 3.86
528 545 5.672194 AGGTCATTGTAAATACTCCCTCCAT 59.328 40.000 0.00 0.00 0.00 3.41
529 546 6.160459 AGGTCATTGTAAATACTCCCTCCATT 59.840 38.462 0.00 0.00 0.00 3.16
530 547 6.486993 GGTCATTGTAAATACTCCCTCCATTC 59.513 42.308 0.00 0.00 0.00 2.67
531 548 6.486993 GTCATTGTAAATACTCCCTCCATTCC 59.513 42.308 0.00 0.00 0.00 3.01
532 549 6.389869 TCATTGTAAATACTCCCTCCATTCCT 59.610 38.462 0.00 0.00 0.00 3.36
533 550 7.570982 TCATTGTAAATACTCCCTCCATTCCTA 59.429 37.037 0.00 0.00 0.00 2.94
534 551 7.758820 TTGTAAATACTCCCTCCATTCCTAA 57.241 36.000 0.00 0.00 0.00 2.69
535 552 7.758820 TGTAAATACTCCCTCCATTCCTAAA 57.241 36.000 0.00 0.00 0.00 1.85
536 553 8.344939 TGTAAATACTCCCTCCATTCCTAAAT 57.655 34.615 0.00 0.00 0.00 1.40
537 554 9.455144 TGTAAATACTCCCTCCATTCCTAAATA 57.545 33.333 0.00 0.00 0.00 1.40
542 559 7.575499 ACTCCCTCCATTCCTAAATATAAGG 57.425 40.000 0.00 0.00 35.26 2.69
543 560 7.089566 ACTCCCTCCATTCCTAAATATAAGGT 58.910 38.462 4.41 0.00 35.48 3.50
544 561 7.017651 ACTCCCTCCATTCCTAAATATAAGGTG 59.982 40.741 4.41 0.00 35.48 4.00
545 562 6.855061 TCCCTCCATTCCTAAATATAAGGTGT 59.145 38.462 4.41 0.00 35.48 4.16
546 563 8.020253 TCCCTCCATTCCTAAATATAAGGTGTA 58.980 37.037 4.41 0.00 35.48 2.90
547 564 8.836735 CCCTCCATTCCTAAATATAAGGTGTAT 58.163 37.037 4.41 0.00 35.48 2.29
578 595 8.844441 TTTTAAAAAGTCAACGGTTGTCTATG 57.156 30.769 18.42 0.00 0.00 2.23
579 596 7.556733 TTAAAAAGTCAACGGTTGTCTATGT 57.443 32.000 18.42 10.36 0.00 2.29
580 597 6.445357 AAAAAGTCAACGGTTGTCTATGTT 57.555 33.333 18.42 11.48 0.00 2.71
581 598 6.445357 AAAAGTCAACGGTTGTCTATGTTT 57.555 33.333 18.42 13.25 0.00 2.83
582 599 5.418310 AAGTCAACGGTTGTCTATGTTTG 57.582 39.130 18.42 0.00 0.00 2.93
583 600 4.699637 AGTCAACGGTTGTCTATGTTTGA 58.300 39.130 19.47 0.00 0.00 2.69
584 601 4.510340 AGTCAACGGTTGTCTATGTTTGAC 59.490 41.667 19.47 7.36 35.21 3.18
585 602 3.810941 TCAACGGTTGTCTATGTTTGACC 59.189 43.478 19.47 0.00 33.83 4.02
586 603 3.478857 ACGGTTGTCTATGTTTGACCA 57.521 42.857 0.00 0.00 33.83 4.02
587 604 3.811083 ACGGTTGTCTATGTTTGACCAA 58.189 40.909 0.00 0.00 33.83 3.67
588 605 3.562557 ACGGTTGTCTATGTTTGACCAAC 59.437 43.478 0.00 0.00 33.83 3.77
589 606 3.813166 CGGTTGTCTATGTTTGACCAACT 59.187 43.478 0.00 0.00 36.21 3.16
590 607 4.274950 CGGTTGTCTATGTTTGACCAACTT 59.725 41.667 0.00 0.00 36.21 2.66
591 608 5.220970 CGGTTGTCTATGTTTGACCAACTTT 60.221 40.000 0.00 0.00 36.21 2.66
592 609 6.017770 CGGTTGTCTATGTTTGACCAACTTTA 60.018 38.462 0.00 0.00 36.21 1.85
593 610 7.136772 GGTTGTCTATGTTTGACCAACTTTAC 58.863 38.462 0.00 0.00 36.21 2.01
594 611 7.201750 GGTTGTCTATGTTTGACCAACTTTACA 60.202 37.037 0.00 0.00 36.21 2.41
595 612 7.490962 TGTCTATGTTTGACCAACTTTACAG 57.509 36.000 0.00 0.00 36.21 2.74
596 613 6.017440 TGTCTATGTTTGACCAACTTTACAGC 60.017 38.462 0.00 0.00 36.21 4.40
597 614 6.017440 GTCTATGTTTGACCAACTTTACAGCA 60.017 38.462 0.00 0.00 36.21 4.41
598 615 5.590530 ATGTTTGACCAACTTTACAGCAA 57.409 34.783 0.00 0.00 36.21 3.91
599 616 5.392767 TGTTTGACCAACTTTACAGCAAA 57.607 34.783 0.00 0.00 36.21 3.68
600 617 5.784177 TGTTTGACCAACTTTACAGCAAAA 58.216 33.333 0.00 0.00 36.21 2.44
601 618 6.402222 TGTTTGACCAACTTTACAGCAAAAT 58.598 32.000 0.00 0.00 36.21 1.82
602 619 7.548097 TGTTTGACCAACTTTACAGCAAAATA 58.452 30.769 0.00 0.00 36.21 1.40
603 620 8.200792 TGTTTGACCAACTTTACAGCAAAATAT 58.799 29.630 0.00 0.00 36.21 1.28
604 621 9.685828 GTTTGACCAACTTTACAGCAAAATATA 57.314 29.630 0.00 0.00 31.92 0.86
670 687 8.809159 AGTTCATGACGAATCTAGTGATAATG 57.191 34.615 0.00 0.00 35.63 1.90
671 688 8.633561 AGTTCATGACGAATCTAGTGATAATGA 58.366 33.333 0.00 0.00 35.63 2.57
672 689 9.416794 GTTCATGACGAATCTAGTGATAATGAT 57.583 33.333 0.00 0.00 35.63 2.45
673 690 9.987272 TTCATGACGAATCTAGTGATAATGATT 57.013 29.630 0.00 0.00 31.70 2.57
674 691 9.987272 TCATGACGAATCTAGTGATAATGATTT 57.013 29.630 0.00 0.00 31.70 2.17
676 693 8.593492 TGACGAATCTAGTGATAATGATTTGG 57.407 34.615 0.00 0.00 35.65 3.28
677 694 8.204160 TGACGAATCTAGTGATAATGATTTGGT 58.796 33.333 0.00 0.00 35.65 3.67
678 695 9.692749 GACGAATCTAGTGATAATGATTTGGTA 57.307 33.333 0.00 0.00 35.65 3.25
714 731 9.959749 TTGATATTTTTGTCTACAAACTTGGTC 57.040 29.630 7.75 4.63 44.56 4.02
715 732 9.126151 TGATATTTTTGTCTACAAACTTGGTCA 57.874 29.630 7.75 6.73 44.56 4.02
716 733 9.959749 GATATTTTTGTCTACAAACTTGGTCAA 57.040 29.630 7.75 0.00 44.56 3.18
718 735 7.876896 TTTTTGTCTACAAACTTGGTCAAAC 57.123 32.000 7.75 0.00 44.56 2.93
719 736 6.827586 TTTGTCTACAAACTTGGTCAAACT 57.172 33.333 4.19 0.00 40.55 2.66
720 737 6.827586 TTGTCTACAAACTTGGTCAAACTT 57.172 33.333 0.00 0.00 32.11 2.66
721 738 7.925043 TTGTCTACAAACTTGGTCAAACTTA 57.075 32.000 0.00 0.00 32.11 2.24
722 739 7.548196 TGTCTACAAACTTGGTCAAACTTAG 57.452 36.000 0.00 0.00 0.00 2.18
723 740 7.332557 TGTCTACAAACTTGGTCAAACTTAGA 58.667 34.615 0.00 0.00 0.00 2.10
724 741 7.494625 TGTCTACAAACTTGGTCAAACTTAGAG 59.505 37.037 0.00 0.00 0.00 2.43
725 742 7.709613 GTCTACAAACTTGGTCAAACTTAGAGA 59.290 37.037 0.00 0.00 0.00 3.10
726 743 8.262227 TCTACAAACTTGGTCAAACTTAGAGAA 58.738 33.333 0.00 0.00 0.00 2.87
727 744 7.321745 ACAAACTTGGTCAAACTTAGAGAAG 57.678 36.000 0.00 0.00 38.76 2.85
770 787 9.720769 AATAATACACCTTATATTGAGGAACGG 57.279 33.333 10.81 0.00 37.72 4.44
771 788 6.989155 ATACACCTTATATTGAGGAACGGA 57.011 37.500 10.81 0.00 37.72 4.69
772 789 5.277857 ACACCTTATATTGAGGAACGGAG 57.722 43.478 10.81 0.00 37.72 4.63
773 790 4.101119 ACACCTTATATTGAGGAACGGAGG 59.899 45.833 10.81 0.00 37.72 4.30
774 791 3.646637 ACCTTATATTGAGGAACGGAGGG 59.353 47.826 10.81 0.00 37.72 4.30
775 792 3.901844 CCTTATATTGAGGAACGGAGGGA 59.098 47.826 0.00 0.00 36.33 4.20
776 793 4.021016 CCTTATATTGAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 36.33 4.30
796 813 6.901300 AGGGAGTATAACTGTGGTAATCTCAA 59.099 38.462 3.84 0.00 0.00 3.02
849 866 1.271926 ACTTTGCTATCAAACGGGGCT 60.272 47.619 0.00 0.00 37.28 5.19
850 867 1.818674 CTTTGCTATCAAACGGGGCTT 59.181 47.619 0.00 0.00 37.28 4.35
851 868 2.791347 TTGCTATCAAACGGGGCTTA 57.209 45.000 0.00 0.00 0.00 3.09
852 869 2.325583 TGCTATCAAACGGGGCTTAG 57.674 50.000 0.00 0.00 0.00 2.18
853 870 0.945099 GCTATCAAACGGGGCTTAGC 59.055 55.000 0.00 0.00 0.00 3.09
854 871 1.217882 CTATCAAACGGGGCTTAGCG 58.782 55.000 0.00 0.00 0.00 4.26
855 872 0.538118 TATCAAACGGGGCTTAGCGT 59.462 50.000 0.00 0.00 0.00 5.07
856 873 1.024579 ATCAAACGGGGCTTAGCGTG 61.025 55.000 0.00 0.00 0.00 5.34
857 874 2.359478 AAACGGGGCTTAGCGTGG 60.359 61.111 0.00 0.00 0.00 4.94
858 875 2.886134 AAACGGGGCTTAGCGTGGA 61.886 57.895 0.00 0.00 0.00 4.02
859 876 2.400269 AAACGGGGCTTAGCGTGGAA 62.400 55.000 0.00 0.00 0.00 3.53
860 877 2.818274 CGGGGCTTAGCGTGGAAC 60.818 66.667 0.00 0.00 0.00 3.62
861 878 2.669240 GGGGCTTAGCGTGGAACT 59.331 61.111 0.00 0.00 31.75 3.01
862 879 1.745489 GGGGCTTAGCGTGGAACTG 60.745 63.158 0.00 0.00 31.75 3.16
863 880 1.003718 GGGCTTAGCGTGGAACTGT 60.004 57.895 0.00 0.00 31.75 3.55
864 881 1.019805 GGGCTTAGCGTGGAACTGTC 61.020 60.000 0.00 0.00 31.75 3.51
865 882 0.320421 GGCTTAGCGTGGAACTGTCA 60.320 55.000 0.00 0.00 31.75 3.58
866 883 0.790814 GCTTAGCGTGGAACTGTCAC 59.209 55.000 0.00 0.00 31.75 3.67
867 884 1.605712 GCTTAGCGTGGAACTGTCACT 60.606 52.381 0.00 0.00 33.31 3.41
868 885 2.329379 CTTAGCGTGGAACTGTCACTC 58.671 52.381 0.00 0.00 33.31 3.51
869 886 1.324383 TAGCGTGGAACTGTCACTCA 58.676 50.000 0.00 0.00 33.31 3.41
870 887 0.249489 AGCGTGGAACTGTCACTCAC 60.249 55.000 0.00 0.00 33.31 3.51
871 888 0.249489 GCGTGGAACTGTCACTCACT 60.249 55.000 0.00 0.00 33.31 3.41
872 889 1.772182 CGTGGAACTGTCACTCACTC 58.228 55.000 0.00 0.00 33.31 3.51
873 890 1.067060 CGTGGAACTGTCACTCACTCA 59.933 52.381 0.00 0.00 33.31 3.41
874 891 2.474816 GTGGAACTGTCACTCACTCAC 58.525 52.381 0.00 0.00 32.78 3.51
875 892 2.101582 GTGGAACTGTCACTCACTCACT 59.898 50.000 0.00 0.00 32.78 3.41
876 893 2.766263 TGGAACTGTCACTCACTCACTT 59.234 45.455 0.00 0.00 0.00 3.16
877 894 3.181475 TGGAACTGTCACTCACTCACTTC 60.181 47.826 0.00 0.00 0.00 3.01
878 895 2.783828 ACTGTCACTCACTCACTTCG 57.216 50.000 0.00 0.00 0.00 3.79
879 896 1.269309 ACTGTCACTCACTCACTTCGC 60.269 52.381 0.00 0.00 0.00 4.70
880 897 1.000827 CTGTCACTCACTCACTTCGCT 60.001 52.381 0.00 0.00 0.00 4.93
881 898 1.269257 TGTCACTCACTCACTTCGCTG 60.269 52.381 0.00 0.00 0.00 5.18
882 899 1.032794 TCACTCACTCACTTCGCTGT 58.967 50.000 0.00 0.00 0.00 4.40
883 900 2.031069 GTCACTCACTCACTTCGCTGTA 60.031 50.000 0.00 0.00 0.00 2.74
884 901 2.226674 TCACTCACTCACTTCGCTGTAG 59.773 50.000 0.00 0.00 0.00 2.74
885 902 1.542030 ACTCACTCACTTCGCTGTAGG 59.458 52.381 0.00 0.00 0.00 3.18
886 903 1.813178 CTCACTCACTTCGCTGTAGGA 59.187 52.381 0.00 0.00 0.00 2.94
887 904 2.425312 CTCACTCACTTCGCTGTAGGAT 59.575 50.000 0.00 0.00 0.00 3.24
888 905 2.164422 TCACTCACTTCGCTGTAGGATG 59.836 50.000 0.00 0.00 0.00 3.51
889 906 2.094494 CACTCACTTCGCTGTAGGATGT 60.094 50.000 0.00 0.00 0.00 3.06
890 907 3.128764 CACTCACTTCGCTGTAGGATGTA 59.871 47.826 0.00 0.00 0.00 2.29
891 908 3.128938 ACTCACTTCGCTGTAGGATGTAC 59.871 47.826 0.00 0.00 0.00 2.90
892 909 3.353557 TCACTTCGCTGTAGGATGTACT 58.646 45.455 0.00 0.00 0.00 2.73
893 910 3.762288 TCACTTCGCTGTAGGATGTACTT 59.238 43.478 0.00 0.00 0.00 2.24
894 911 4.219944 TCACTTCGCTGTAGGATGTACTTT 59.780 41.667 0.00 0.00 0.00 2.66
895 912 5.416639 TCACTTCGCTGTAGGATGTACTTTA 59.583 40.000 0.00 0.00 0.00 1.85
896 913 5.515626 CACTTCGCTGTAGGATGTACTTTAC 59.484 44.000 0.00 0.00 0.00 2.01
897 914 4.282950 TCGCTGTAGGATGTACTTTACG 57.717 45.455 0.00 0.00 0.00 3.18
898 915 3.065786 TCGCTGTAGGATGTACTTTACGG 59.934 47.826 0.00 0.00 0.00 4.02
899 916 3.121544 GCTGTAGGATGTACTTTACGGC 58.878 50.000 8.04 8.04 40.10 5.68
900 917 3.429822 GCTGTAGGATGTACTTTACGGCA 60.430 47.826 14.84 1.25 44.11 5.69
901 918 4.739735 GCTGTAGGATGTACTTTACGGCAT 60.740 45.833 14.84 0.00 44.11 4.40
902 919 5.347620 TGTAGGATGTACTTTACGGCATT 57.652 39.130 0.00 0.00 0.00 3.56
903 920 5.113383 TGTAGGATGTACTTTACGGCATTG 58.887 41.667 0.00 0.00 0.00 2.82
904 921 4.216411 AGGATGTACTTTACGGCATTGT 57.784 40.909 0.00 0.00 0.00 2.71
905 922 4.585879 AGGATGTACTTTACGGCATTGTT 58.414 39.130 0.00 0.00 0.00 2.83
906 923 4.634443 AGGATGTACTTTACGGCATTGTTC 59.366 41.667 0.00 0.00 0.00 3.18
907 924 4.201881 GGATGTACTTTACGGCATTGTTCC 60.202 45.833 0.00 0.00 0.00 3.62
916 933 0.028110 GGCATTGTTCCGATCGAAGC 59.972 55.000 18.66 0.00 0.00 3.86
917 934 1.009829 GCATTGTTCCGATCGAAGCT 58.990 50.000 18.66 0.00 0.00 3.74
918 935 1.267732 GCATTGTTCCGATCGAAGCTG 60.268 52.381 18.66 7.28 0.00 4.24
919 936 1.009829 ATTGTTCCGATCGAAGCTGC 58.990 50.000 18.66 0.00 0.00 5.25
920 937 1.351430 TTGTTCCGATCGAAGCTGCG 61.351 55.000 18.66 8.15 0.00 5.18
921 938 1.805945 GTTCCGATCGAAGCTGCGT 60.806 57.895 18.66 0.78 0.00 5.24
922 939 1.516386 TTCCGATCGAAGCTGCGTC 60.516 57.895 18.66 10.11 0.00 5.19
923 940 2.884087 TTCCGATCGAAGCTGCGTCC 62.884 60.000 18.66 6.21 0.00 4.79
924 941 3.315521 CGATCGAAGCTGCGTCCG 61.316 66.667 15.21 14.64 0.00 4.79
925 942 2.202623 GATCGAAGCTGCGTCCGT 60.203 61.111 15.21 0.00 0.00 4.69
926 943 1.063649 GATCGAAGCTGCGTCCGTA 59.936 57.895 15.21 0.00 0.00 4.02
927 944 0.930742 GATCGAAGCTGCGTCCGTAG 60.931 60.000 15.21 0.15 0.00 3.51
956 973 4.261238 CGACTAGCTACCACACTTATCCAG 60.261 50.000 0.00 0.00 0.00 3.86
1030 1052 2.048222 CGCCTCACGTCATGGTGT 60.048 61.111 0.00 0.00 39.00 4.16
1207 1250 2.606213 TGGTCTCCATGCCGGACA 60.606 61.111 5.05 2.56 39.64 4.02
1311 1408 2.724454 CTCGTCAGGGAGAAGAAGGTA 58.276 52.381 0.00 0.00 34.30 3.08
1521 1640 6.255884 ACGCTCAAACGAAAAAGAAAATTC 57.744 33.333 0.00 0.00 36.70 2.17
1525 1644 7.119360 GCTCAAACGAAAAAGAAAATTCAAGG 58.881 34.615 0.00 0.00 0.00 3.61
1526 1645 6.999456 TCAAACGAAAAAGAAAATTCAAGGC 58.001 32.000 0.00 0.00 0.00 4.35
1634 2028 0.601046 TCTTTGAGGCAGCACGTCAG 60.601 55.000 0.00 0.00 43.61 3.51
1635 2029 0.601046 CTTTGAGGCAGCACGTCAGA 60.601 55.000 0.00 0.00 43.61 3.27
1636 2030 0.880278 TTTGAGGCAGCACGTCAGAC 60.880 55.000 0.00 0.00 43.61 3.51
1654 3514 6.652900 CGTCAGACTCAGATCAGAGGATAATA 59.347 42.308 18.28 0.00 39.97 0.98
1656 3516 9.679661 GTCAGACTCAGATCAGAGGATAATATA 57.320 37.037 18.28 0.00 39.97 0.86
1807 4708 1.968540 GTGGTCTTCCAGCTGGTGC 60.969 63.158 31.58 18.73 45.24 5.01
2089 4999 4.345286 AGGGGCTGGAGCTCACCT 62.345 66.667 17.19 11.25 45.20 4.00
2238 5161 4.489795 GTGCGCGCAGTCGACATG 62.490 66.667 37.44 13.76 38.10 3.21
2264 5194 8.902806 GGTCTTCACCATTGATTTCATTGTATA 58.097 33.333 2.78 0.00 43.17 1.47
2265 5195 9.941664 GTCTTCACCATTGATTTCATTGTATAG 57.058 33.333 2.78 0.00 0.00 1.31
2266 5196 9.685276 TCTTCACCATTGATTTCATTGTATAGT 57.315 29.630 2.78 0.00 0.00 2.12
2598 5600 4.827087 CAGGGACGCAGCTCGCAT 62.827 66.667 8.52 0.00 42.60 4.73
2599 5601 4.827087 AGGGACGCAGCTCGCATG 62.827 66.667 8.52 0.00 42.60 4.06
2641 5643 4.054671 GGCTCCTCGTATGAGAATTTCAG 58.945 47.826 13.79 1.14 45.57 3.02
2693 5700 6.105333 AGCTGTGTTTCAAATTAACTTTGCA 58.895 32.000 0.00 0.00 43.32 4.08
2727 5735 2.286872 GCTCCCAGTGATCTGATGTTG 58.713 52.381 0.00 0.00 43.76 3.33
2732 5740 4.101585 TCCCAGTGATCTGATGTTGGTATC 59.898 45.833 0.00 0.00 43.76 2.24
2743 5751 3.584406 TGTTGGTATCCCATTTTTGCG 57.416 42.857 0.00 0.00 41.49 4.85
2746 5754 4.950475 TGTTGGTATCCCATTTTTGCGATA 59.050 37.500 0.00 0.00 41.49 2.92
2747 5755 5.163602 TGTTGGTATCCCATTTTTGCGATAC 60.164 40.000 0.00 0.00 41.49 2.24
2748 5756 4.527944 TGGTATCCCATTTTTGCGATACA 58.472 39.130 11.02 0.00 39.11 2.29
2749 5757 4.950475 TGGTATCCCATTTTTGCGATACAA 59.050 37.500 11.02 0.38 39.11 2.41
2750 5758 5.419155 TGGTATCCCATTTTTGCGATACAAA 59.581 36.000 11.02 0.00 40.29 2.83
2751 5759 6.097554 TGGTATCCCATTTTTGCGATACAAAT 59.902 34.615 11.02 0.00 41.07 2.32
2752 5760 7.285629 TGGTATCCCATTTTTGCGATACAAATA 59.714 33.333 11.02 0.00 41.07 1.40
2758 5766 3.617540 TTTGCGATACAAATATGCCCG 57.382 42.857 0.00 0.00 43.35 6.13
2759 5767 1.518325 TGCGATACAAATATGCCCGG 58.482 50.000 0.00 0.00 0.00 5.73
2760 5768 0.168128 GCGATACAAATATGCCCGGC 59.832 55.000 1.04 1.04 0.00 6.13
2761 5769 1.808411 CGATACAAATATGCCCGGCT 58.192 50.000 11.61 0.00 0.00 5.52
2762 5770 1.464608 CGATACAAATATGCCCGGCTG 59.535 52.381 11.61 2.25 0.00 4.85
2763 5771 2.504367 GATACAAATATGCCCGGCTGT 58.496 47.619 11.61 8.68 0.00 4.40
2764 5772 1.961793 TACAAATATGCCCGGCTGTC 58.038 50.000 11.61 0.00 0.00 3.51
2765 5773 0.034574 ACAAATATGCCCGGCTGTCA 60.035 50.000 11.61 0.00 0.00 3.58
2766 5774 1.321474 CAAATATGCCCGGCTGTCAT 58.679 50.000 11.61 0.00 0.00 3.06
2767 5775 2.158682 ACAAATATGCCCGGCTGTCATA 60.159 45.455 11.61 0.00 0.00 2.15
2768 5776 2.884012 CAAATATGCCCGGCTGTCATAA 59.116 45.455 11.61 0.00 0.00 1.90
2769 5777 2.479566 ATATGCCCGGCTGTCATAAG 57.520 50.000 11.61 0.00 0.00 1.73
2770 5778 1.419381 TATGCCCGGCTGTCATAAGA 58.581 50.000 11.61 0.00 0.00 2.10
2771 5779 0.107456 ATGCCCGGCTGTCATAAGAG 59.893 55.000 11.61 0.00 0.00 2.85
2772 5780 0.975556 TGCCCGGCTGTCATAAGAGA 60.976 55.000 11.61 0.00 0.00 3.10
2773 5781 0.394565 GCCCGGCTGTCATAAGAGAT 59.605 55.000 0.71 0.00 0.00 2.75
2774 5782 1.202698 GCCCGGCTGTCATAAGAGATT 60.203 52.381 0.71 0.00 0.00 2.40
2775 5783 2.487934 CCCGGCTGTCATAAGAGATTG 58.512 52.381 0.00 0.00 0.00 2.67
2776 5784 2.103094 CCCGGCTGTCATAAGAGATTGA 59.897 50.000 0.00 0.00 0.00 2.57
2777 5785 3.126831 CCGGCTGTCATAAGAGATTGAC 58.873 50.000 0.00 0.00 42.05 3.18
2778 5786 3.181471 CCGGCTGTCATAAGAGATTGACT 60.181 47.826 0.00 0.00 42.17 3.41
2779 5787 3.801050 CGGCTGTCATAAGAGATTGACTG 59.199 47.826 4.86 5.37 42.17 3.51
2780 5788 4.125703 GGCTGTCATAAGAGATTGACTGG 58.874 47.826 10.55 3.44 42.17 4.00
2781 5789 4.141846 GGCTGTCATAAGAGATTGACTGGA 60.142 45.833 10.55 0.00 42.17 3.86
2782 5790 5.049167 GCTGTCATAAGAGATTGACTGGAG 58.951 45.833 10.55 0.26 42.17 3.86
2783 5791 5.599732 CTGTCATAAGAGATTGACTGGAGG 58.400 45.833 4.86 0.00 42.17 4.30
2784 5792 4.406972 TGTCATAAGAGATTGACTGGAGGG 59.593 45.833 4.86 0.00 42.17 4.30
2785 5793 4.407296 GTCATAAGAGATTGACTGGAGGGT 59.593 45.833 0.00 0.00 39.30 4.34
2786 5794 5.032846 TCATAAGAGATTGACTGGAGGGTT 58.967 41.667 0.00 0.00 0.00 4.11
2787 5795 3.990959 AAGAGATTGACTGGAGGGTTC 57.009 47.619 0.00 0.00 0.00 3.62
2788 5796 2.192263 AGAGATTGACTGGAGGGTTCC 58.808 52.381 0.00 0.00 44.31 3.62
2799 5807 2.822697 GGAGGGTTCCACTAAGACTCT 58.177 52.381 0.00 0.00 43.45 3.24
2800 5808 2.761767 GGAGGGTTCCACTAAGACTCTC 59.238 54.545 0.00 0.00 43.45 3.20
2801 5809 2.761767 GAGGGTTCCACTAAGACTCTCC 59.238 54.545 0.00 0.00 35.37 3.71
2802 5810 1.477295 GGGTTCCACTAAGACTCTCCG 59.523 57.143 0.00 0.00 0.00 4.63
2803 5811 2.444421 GGTTCCACTAAGACTCTCCGA 58.556 52.381 0.00 0.00 0.00 4.55
2804 5812 2.424246 GGTTCCACTAAGACTCTCCGAG 59.576 54.545 0.00 0.00 35.52 4.63
2805 5813 2.421751 TCCACTAAGACTCTCCGAGG 57.578 55.000 0.00 0.00 33.35 4.63
2806 5814 1.064611 TCCACTAAGACTCTCCGAGGG 60.065 57.143 0.00 0.00 33.35 4.30
2807 5815 1.341187 CCACTAAGACTCTCCGAGGGT 60.341 57.143 0.00 0.00 33.35 4.34
2808 5816 2.448453 CACTAAGACTCTCCGAGGGTT 58.552 52.381 1.47 0.00 33.35 4.11
2809 5817 2.424246 CACTAAGACTCTCCGAGGGTTC 59.576 54.545 1.47 0.00 33.35 3.62
2810 5818 2.025898 CTAAGACTCTCCGAGGGTTCC 58.974 57.143 1.47 0.00 33.35 3.62
2811 5819 0.114560 AAGACTCTCCGAGGGTTCCA 59.885 55.000 1.47 0.00 33.35 3.53
2812 5820 0.612453 AGACTCTCCGAGGGTTCCAC 60.612 60.000 1.47 0.00 33.35 4.02
2813 5821 0.612453 GACTCTCCGAGGGTTCCACT 60.612 60.000 1.47 0.00 33.35 4.00
2814 5822 0.702902 ACTCTCCGAGGGTTCCACTA 59.297 55.000 0.00 0.00 33.35 2.74
2815 5823 1.076677 ACTCTCCGAGGGTTCCACTAA 59.923 52.381 0.00 0.00 33.35 2.24
2816 5824 1.751924 CTCTCCGAGGGTTCCACTAAG 59.248 57.143 0.00 0.00 0.00 2.18
2817 5825 1.356738 TCTCCGAGGGTTCCACTAAGA 59.643 52.381 0.00 0.00 0.00 2.10
2818 5826 1.477295 CTCCGAGGGTTCCACTAAGAC 59.523 57.143 0.00 0.00 0.00 3.01
2819 5827 1.076677 TCCGAGGGTTCCACTAAGACT 59.923 52.381 0.00 0.00 0.00 3.24
2820 5828 1.477295 CCGAGGGTTCCACTAAGACTC 59.523 57.143 0.00 0.00 0.00 3.36
2821 5829 2.448453 CGAGGGTTCCACTAAGACTCT 58.552 52.381 0.00 0.00 0.00 3.24
2822 5830 2.424246 CGAGGGTTCCACTAAGACTCTC 59.576 54.545 0.00 0.00 37.51 3.20
2823 5831 2.761767 GAGGGTTCCACTAAGACTCTCC 59.238 54.545 0.00 0.00 35.37 3.71
2824 5832 1.477295 GGGTTCCACTAAGACTCTCCG 59.523 57.143 0.00 0.00 0.00 4.63
2825 5833 2.444421 GGTTCCACTAAGACTCTCCGA 58.556 52.381 0.00 0.00 0.00 4.55
2826 5834 2.424246 GGTTCCACTAAGACTCTCCGAG 59.576 54.545 0.00 0.00 35.52 4.63
2827 5835 2.421751 TCCACTAAGACTCTCCGAGG 57.578 55.000 0.00 0.00 33.35 4.63
2828 5836 1.064611 TCCACTAAGACTCTCCGAGGG 60.065 57.143 0.00 0.00 33.35 4.30
2829 5837 1.341187 CCACTAAGACTCTCCGAGGGT 60.341 57.143 0.00 0.00 33.35 4.34
2830 5838 2.448453 CACTAAGACTCTCCGAGGGTT 58.552 52.381 1.47 0.00 33.35 4.11
2831 5839 2.424246 CACTAAGACTCTCCGAGGGTTC 59.576 54.545 1.47 0.00 33.35 3.62
2832 5840 2.025898 CTAAGACTCTCCGAGGGTTCC 58.974 57.143 1.47 0.00 33.35 3.62
2833 5841 0.615261 AAGACTCTCCGAGGGTTCCC 60.615 60.000 1.47 0.00 33.35 3.97
2834 5842 2.039137 ACTCTCCGAGGGTTCCCC 59.961 66.667 4.02 0.00 45.90 4.81
2930 5938 4.787280 CCTGCCCCTCCTCCGTCT 62.787 72.222 0.00 0.00 0.00 4.18
2931 5939 2.279073 CTGCCCCTCCTCCGTCTA 59.721 66.667 0.00 0.00 0.00 2.59
2932 5940 1.830408 CTGCCCCTCCTCCGTCTAG 60.830 68.421 0.00 0.00 0.00 2.43
2933 5941 2.522193 GCCCCTCCTCCGTCTAGG 60.522 72.222 0.00 0.00 42.97 3.02
2934 5942 2.522193 CCCCTCCTCCGTCTAGGC 60.522 72.222 0.00 0.00 40.77 3.93
2935 5943 2.522193 CCCTCCTCCGTCTAGGCC 60.522 72.222 0.00 0.00 40.77 5.19
2936 5944 2.907917 CCTCCTCCGTCTAGGCCG 60.908 72.222 0.00 0.00 40.77 6.13
2937 5945 3.597728 CTCCTCCGTCTAGGCCGC 61.598 72.222 0.00 0.00 40.77 6.53
2940 5948 3.597728 CTCCGTCTAGGCCGCCTC 61.598 72.222 17.40 0.01 40.77 4.70
3011 6019 4.191015 GACCCCGCCTTCCCCATC 62.191 72.222 0.00 0.00 0.00 3.51
3012 6020 4.760220 ACCCCGCCTTCCCCATCT 62.760 66.667 0.00 0.00 0.00 2.90
3013 6021 3.878667 CCCCGCCTTCCCCATCTC 61.879 72.222 0.00 0.00 0.00 2.75
3014 6022 3.878667 CCCGCCTTCCCCATCTCC 61.879 72.222 0.00 0.00 0.00 3.71
3015 6023 3.878667 CCGCCTTCCCCATCTCCC 61.879 72.222 0.00 0.00 0.00 4.30
3016 6024 3.878667 CGCCTTCCCCATCTCCCC 61.879 72.222 0.00 0.00 0.00 4.81
3017 6025 3.502875 GCCTTCCCCATCTCCCCC 61.503 72.222 0.00 0.00 0.00 5.40
3508 6516 4.586235 GTGGTGCTGGGTGGCTGT 62.586 66.667 0.00 0.00 0.00 4.40
3509 6517 4.269523 TGGTGCTGGGTGGCTGTC 62.270 66.667 0.00 0.00 0.00 3.51
3511 6519 4.314440 GTGCTGGGTGGCTGTCGA 62.314 66.667 0.00 0.00 0.00 4.20
3512 6520 4.314440 TGCTGGGTGGCTGTCGAC 62.314 66.667 9.11 9.11 0.00 4.20
3540 6548 4.530857 CCCAGATCCGGGCACGTC 62.531 72.222 7.97 0.00 40.07 4.34
3541 6549 4.873129 CCAGATCCGGGCACGTCG 62.873 72.222 7.97 0.00 38.78 5.12
3552 6560 4.838152 CACGTCGGGCCCCATCTG 62.838 72.222 18.66 0.58 0.00 2.90
3587 6595 4.096003 CCCCGGCATGGTCTCGTT 62.096 66.667 0.00 0.00 35.15 3.85
3588 6596 2.819595 CCCGGCATGGTCTCGTTG 60.820 66.667 0.00 0.00 35.15 4.10
3589 6597 2.047274 CCGGCATGGTCTCGTTGT 60.047 61.111 0.00 0.00 0.00 3.32
3590 6598 2.100631 CCGGCATGGTCTCGTTGTC 61.101 63.158 0.00 0.00 0.00 3.18
3591 6599 1.079819 CGGCATGGTCTCGTTGTCT 60.080 57.895 0.00 0.00 0.00 3.41
3592 6600 1.354337 CGGCATGGTCTCGTTGTCTG 61.354 60.000 0.00 0.00 0.00 3.51
3593 6601 1.639298 GGCATGGTCTCGTTGTCTGC 61.639 60.000 0.00 0.00 0.00 4.26
3594 6602 1.959899 GCATGGTCTCGTTGTCTGCG 61.960 60.000 0.00 0.00 0.00 5.18
3595 6603 1.079819 ATGGTCTCGTTGTCTGCGG 60.080 57.895 0.00 0.00 0.00 5.69
3596 6604 3.112709 GGTCTCGTTGTCTGCGGC 61.113 66.667 0.00 0.00 0.00 6.53
3597 6605 3.470567 GTCTCGTTGTCTGCGGCG 61.471 66.667 0.51 0.51 0.00 6.46
3611 6619 4.821589 GGCGCGGTGAGGAGAAGG 62.822 72.222 8.83 0.00 0.00 3.46
3612 6620 3.760035 GCGCGGTGAGGAGAAGGA 61.760 66.667 8.83 0.00 0.00 3.36
3613 6621 2.492090 CGCGGTGAGGAGAAGGAG 59.508 66.667 0.00 0.00 0.00 3.69
3614 6622 2.185608 GCGGTGAGGAGAAGGAGC 59.814 66.667 0.00 0.00 0.00 4.70
3615 6623 2.492090 CGGTGAGGAGAAGGAGCG 59.508 66.667 0.00 0.00 0.00 5.03
3616 6624 2.896443 GGTGAGGAGAAGGAGCGG 59.104 66.667 0.00 0.00 0.00 5.52
3617 6625 2.185608 GTGAGGAGAAGGAGCGGC 59.814 66.667 0.00 0.00 0.00 6.53
3618 6626 2.038007 TGAGGAGAAGGAGCGGCT 59.962 61.111 0.00 0.00 0.00 5.52
3619 6627 2.055042 TGAGGAGAAGGAGCGGCTC 61.055 63.158 21.57 21.57 0.00 4.70
3620 6628 3.132481 GAGGAGAAGGAGCGGCTCG 62.132 68.421 22.63 0.00 0.00 5.03
3621 6629 4.214327 GGAGAAGGAGCGGCTCGG 62.214 72.222 22.63 0.00 0.00 4.63
3622 6630 3.141488 GAGAAGGAGCGGCTCGGA 61.141 66.667 22.63 0.00 0.00 4.55
3623 6631 3.418744 GAGAAGGAGCGGCTCGGAC 62.419 68.421 22.63 15.35 0.00 4.79
3624 6632 3.453679 GAAGGAGCGGCTCGGACT 61.454 66.667 22.63 12.13 0.00 3.85
3625 6633 2.997897 AAGGAGCGGCTCGGACTT 60.998 61.111 22.63 17.01 0.00 3.01
3626 6634 3.302347 AAGGAGCGGCTCGGACTTG 62.302 63.158 22.63 0.00 0.00 3.16
3627 6635 4.821589 GGAGCGGCTCGGACTTGG 62.822 72.222 22.63 0.00 0.00 3.61
3628 6636 4.821589 GAGCGGCTCGGACTTGGG 62.822 72.222 15.09 0.00 0.00 4.12
3634 6642 4.796231 CTCGGACTTGGGGCGTCG 62.796 72.222 0.00 0.00 32.24 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 120 8.100791 ACAGAAATACTAGTATTCAAACAGCCA 58.899 33.333 24.80 0.00 34.90 4.75
375 391 4.137543 AGCAATCGAAAAGAAAGGTCTGT 58.862 39.130 0.00 0.00 33.05 3.41
456 473 5.866335 TTTTAATACTGTAGTGTTGGCGG 57.134 39.130 4.53 0.00 31.76 6.13
517 534 8.246615 ACCTTATATTTAGGAATGGAGGGAGTA 58.753 37.037 9.82 0.00 36.58 2.59
518 535 7.017651 CACCTTATATTTAGGAATGGAGGGAGT 59.982 40.741 9.82 0.00 36.58 3.85
519 536 7.017651 ACACCTTATATTTAGGAATGGAGGGAG 59.982 40.741 9.82 0.00 36.58 4.30
520 537 6.855061 ACACCTTATATTTAGGAATGGAGGGA 59.145 38.462 9.82 0.00 36.58 4.20
521 538 7.091533 ACACCTTATATTTAGGAATGGAGGG 57.908 40.000 9.82 0.00 36.58 4.30
552 569 9.291664 CATAGACAACCGTTGACTTTTTAAAAA 57.708 29.630 19.00 12.62 36.98 1.94
553 570 8.460428 ACATAGACAACCGTTGACTTTTTAAAA 58.540 29.630 19.00 0.00 36.98 1.52
554 571 7.987649 ACATAGACAACCGTTGACTTTTTAAA 58.012 30.769 19.00 3.43 36.98 1.52
555 572 7.556733 ACATAGACAACCGTTGACTTTTTAA 57.443 32.000 19.00 4.06 36.98 1.52
556 573 7.556733 AACATAGACAACCGTTGACTTTTTA 57.443 32.000 19.00 4.39 36.98 1.52
557 574 6.445357 AACATAGACAACCGTTGACTTTTT 57.555 33.333 19.00 9.05 36.98 1.94
558 575 6.094325 TCAAACATAGACAACCGTTGACTTTT 59.906 34.615 19.00 11.96 36.98 2.27
559 576 5.587043 TCAAACATAGACAACCGTTGACTTT 59.413 36.000 19.00 10.38 36.98 2.66
560 577 5.007332 GTCAAACATAGACAACCGTTGACTT 59.993 40.000 19.00 6.97 36.98 3.01
561 578 4.510340 GTCAAACATAGACAACCGTTGACT 59.490 41.667 18.19 18.14 39.01 3.41
562 579 4.319261 GGTCAAACATAGACAACCGTTGAC 60.319 45.833 18.19 11.71 37.74 3.18
563 580 3.810941 GGTCAAACATAGACAACCGTTGA 59.189 43.478 18.19 0.00 37.74 3.18
564 581 3.562141 TGGTCAAACATAGACAACCGTTG 59.438 43.478 9.80 9.80 37.74 4.10
565 582 3.811083 TGGTCAAACATAGACAACCGTT 58.189 40.909 0.00 0.00 37.74 4.44
566 583 3.478857 TGGTCAAACATAGACAACCGT 57.521 42.857 0.00 0.00 37.74 4.83
567 584 3.813166 AGTTGGTCAAACATAGACAACCG 59.187 43.478 0.00 0.00 41.61 4.44
568 585 5.767816 AAGTTGGTCAAACATAGACAACC 57.232 39.130 0.00 0.00 41.61 3.77
569 586 7.699566 TGTAAAGTTGGTCAAACATAGACAAC 58.300 34.615 0.00 0.00 41.61 3.32
570 587 7.468084 GCTGTAAAGTTGGTCAAACATAGACAA 60.468 37.037 0.00 0.00 41.61 3.18
571 588 6.017440 GCTGTAAAGTTGGTCAAACATAGACA 60.017 38.462 0.00 0.00 41.61 3.41
572 589 6.017440 TGCTGTAAAGTTGGTCAAACATAGAC 60.017 38.462 0.00 0.00 41.61 2.59
573 590 6.058833 TGCTGTAAAGTTGGTCAAACATAGA 58.941 36.000 0.00 0.00 41.61 1.98
574 591 6.312399 TGCTGTAAAGTTGGTCAAACATAG 57.688 37.500 0.00 0.00 41.61 2.23
575 592 6.701145 TTGCTGTAAAGTTGGTCAAACATA 57.299 33.333 0.00 0.00 41.61 2.29
576 593 5.590530 TTGCTGTAAAGTTGGTCAAACAT 57.409 34.783 0.00 0.00 41.61 2.71
577 594 5.392767 TTTGCTGTAAAGTTGGTCAAACA 57.607 34.783 0.00 0.00 41.61 2.83
578 595 6.902224 ATTTTGCTGTAAAGTTGGTCAAAC 57.098 33.333 0.00 0.00 39.24 2.93
644 661 9.899226 CATTATCACTAGATTCGTCATGAACTA 57.101 33.333 0.00 0.00 40.00 2.24
645 662 8.633561 TCATTATCACTAGATTCGTCATGAACT 58.366 33.333 0.00 0.00 40.00 3.01
646 663 8.803201 TCATTATCACTAGATTCGTCATGAAC 57.197 34.615 0.00 0.00 40.00 3.18
647 664 9.987272 AATCATTATCACTAGATTCGTCATGAA 57.013 29.630 0.00 0.00 41.81 2.57
648 665 9.987272 AAATCATTATCACTAGATTCGTCATGA 57.013 29.630 0.00 0.00 35.67 3.07
650 667 9.212641 CCAAATCATTATCACTAGATTCGTCAT 57.787 33.333 0.00 0.00 35.67 3.06
651 668 8.204160 ACCAAATCATTATCACTAGATTCGTCA 58.796 33.333 0.00 0.00 35.67 4.35
652 669 8.594881 ACCAAATCATTATCACTAGATTCGTC 57.405 34.615 0.00 0.00 35.67 4.20
688 705 9.959749 GACCAAGTTTGTAGACAAAAATATCAA 57.040 29.630 9.33 0.00 46.08 2.57
689 706 9.126151 TGACCAAGTTTGTAGACAAAAATATCA 57.874 29.630 9.33 7.54 46.08 2.15
690 707 9.959749 TTGACCAAGTTTGTAGACAAAAATATC 57.040 29.630 9.33 5.42 46.08 1.63
692 709 9.575783 GTTTGACCAAGTTTGTAGACAAAAATA 57.424 29.630 9.33 0.00 46.08 1.40
693 710 8.311109 AGTTTGACCAAGTTTGTAGACAAAAAT 58.689 29.630 9.33 0.00 46.08 1.82
694 711 7.662897 AGTTTGACCAAGTTTGTAGACAAAAA 58.337 30.769 9.33 0.00 46.08 1.94
695 712 7.222000 AGTTTGACCAAGTTTGTAGACAAAA 57.778 32.000 9.33 0.00 46.08 2.44
696 713 6.827586 AGTTTGACCAAGTTTGTAGACAAA 57.172 33.333 3.71 3.71 42.90 2.83
697 714 6.827586 AAGTTTGACCAAGTTTGTAGACAA 57.172 33.333 0.00 0.00 0.00 3.18
698 715 7.332557 TCTAAGTTTGACCAAGTTTGTAGACA 58.667 34.615 0.00 0.00 30.16 3.41
699 716 7.709613 TCTCTAAGTTTGACCAAGTTTGTAGAC 59.290 37.037 0.00 0.00 30.16 2.59
700 717 7.788026 TCTCTAAGTTTGACCAAGTTTGTAGA 58.212 34.615 0.00 0.00 30.16 2.59
701 718 8.433421 TTCTCTAAGTTTGACCAAGTTTGTAG 57.567 34.615 0.00 0.00 30.16 2.74
702 719 8.044908 ACTTCTCTAAGTTTGACCAAGTTTGTA 58.955 33.333 2.75 0.00 43.60 2.41
703 720 6.884836 ACTTCTCTAAGTTTGACCAAGTTTGT 59.115 34.615 2.75 0.00 43.60 2.83
704 721 7.321745 ACTTCTCTAAGTTTGACCAAGTTTG 57.678 36.000 2.75 0.00 43.60 2.93
744 761 9.720769 CCGTTCCTCAATATAAGGTGTATTATT 57.279 33.333 4.45 0.00 35.29 1.40
745 762 9.096823 TCCGTTCCTCAATATAAGGTGTATTAT 57.903 33.333 4.45 0.00 35.29 1.28
746 763 8.481492 TCCGTTCCTCAATATAAGGTGTATTA 57.519 34.615 4.45 0.00 35.29 0.98
747 764 7.369551 TCCGTTCCTCAATATAAGGTGTATT 57.630 36.000 4.45 0.00 35.29 1.89
748 765 6.014499 CCTCCGTTCCTCAATATAAGGTGTAT 60.014 42.308 4.45 0.00 35.29 2.29
749 766 5.303589 CCTCCGTTCCTCAATATAAGGTGTA 59.696 44.000 4.45 0.00 35.29 2.90
750 767 4.101119 CCTCCGTTCCTCAATATAAGGTGT 59.899 45.833 4.45 0.00 35.29 4.16
751 768 4.503296 CCCTCCGTTCCTCAATATAAGGTG 60.503 50.000 4.45 0.00 35.29 4.00
752 769 3.646637 CCCTCCGTTCCTCAATATAAGGT 59.353 47.826 4.45 0.00 35.29 3.50
753 770 3.901844 TCCCTCCGTTCCTCAATATAAGG 59.098 47.826 0.00 0.00 35.05 2.69
754 771 4.589374 ACTCCCTCCGTTCCTCAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
755 772 4.553678 ACTCCCTCCGTTCCTCAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
756 773 4.194678 ACTCCCTCCGTTCCTCAATATA 57.805 45.455 0.00 0.00 0.00 0.86
757 774 3.047695 ACTCCCTCCGTTCCTCAATAT 57.952 47.619 0.00 0.00 0.00 1.28
758 775 2.544844 ACTCCCTCCGTTCCTCAATA 57.455 50.000 0.00 0.00 0.00 1.90
759 776 2.544844 TACTCCCTCCGTTCCTCAAT 57.455 50.000 0.00 0.00 0.00 2.57
760 777 2.544844 ATACTCCCTCCGTTCCTCAA 57.455 50.000 0.00 0.00 0.00 3.02
761 778 3.053095 AGTTATACTCCCTCCGTTCCTCA 60.053 47.826 0.00 0.00 0.00 3.86
762 779 3.318557 CAGTTATACTCCCTCCGTTCCTC 59.681 52.174 0.00 0.00 0.00 3.71
763 780 3.297736 CAGTTATACTCCCTCCGTTCCT 58.702 50.000 0.00 0.00 0.00 3.36
764 781 3.029570 ACAGTTATACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 0.00 3.62
765 782 3.181478 CCACAGTTATACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
766 783 2.764572 CCACAGTTATACTCCCTCCGTT 59.235 50.000 0.00 0.00 0.00 4.44
767 784 2.292061 ACCACAGTTATACTCCCTCCGT 60.292 50.000 0.00 0.00 0.00 4.69
768 785 2.385803 ACCACAGTTATACTCCCTCCG 58.614 52.381 0.00 0.00 0.00 4.63
769 786 5.839606 AGATTACCACAGTTATACTCCCTCC 59.160 44.000 0.00 0.00 0.00 4.30
770 787 6.550108 TGAGATTACCACAGTTATACTCCCTC 59.450 42.308 0.00 0.00 0.00 4.30
771 788 6.441222 TGAGATTACCACAGTTATACTCCCT 58.559 40.000 0.00 0.00 0.00 4.20
772 789 6.726490 TGAGATTACCACAGTTATACTCCC 57.274 41.667 0.00 0.00 0.00 4.30
773 790 9.444600 TTTTTGAGATTACCACAGTTATACTCC 57.555 33.333 0.00 0.00 0.00 3.85
849 866 1.684450 TGAGTGACAGTTCCACGCTAA 59.316 47.619 0.00 0.00 39.38 3.09
850 867 1.000607 GTGAGTGACAGTTCCACGCTA 60.001 52.381 0.00 0.00 39.38 4.26
851 868 0.249489 GTGAGTGACAGTTCCACGCT 60.249 55.000 0.00 0.00 39.38 5.07
852 869 0.249489 AGTGAGTGACAGTTCCACGC 60.249 55.000 0.00 0.00 39.38 5.34
853 870 1.067060 TGAGTGAGTGACAGTTCCACG 59.933 52.381 0.00 0.00 39.38 4.94
854 871 2.101582 AGTGAGTGAGTGACAGTTCCAC 59.898 50.000 0.00 0.00 31.63 4.02
855 872 2.388735 AGTGAGTGAGTGACAGTTCCA 58.611 47.619 0.00 0.00 31.63 3.53
856 873 3.385577 GAAGTGAGTGAGTGACAGTTCC 58.614 50.000 0.00 0.00 37.75 3.62
857 874 3.046390 CGAAGTGAGTGAGTGACAGTTC 58.954 50.000 0.00 0.00 39.27 3.01
858 875 2.799917 GCGAAGTGAGTGAGTGACAGTT 60.800 50.000 0.00 0.00 31.63 3.16
859 876 1.269309 GCGAAGTGAGTGAGTGACAGT 60.269 52.381 0.00 0.00 34.52 3.55
860 877 1.000827 AGCGAAGTGAGTGAGTGACAG 60.001 52.381 0.00 0.00 0.00 3.51
861 878 1.032794 AGCGAAGTGAGTGAGTGACA 58.967 50.000 0.00 0.00 0.00 3.58
862 879 1.269309 ACAGCGAAGTGAGTGAGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
863 880 1.032794 ACAGCGAAGTGAGTGAGTGA 58.967 50.000 0.00 0.00 0.00 3.41
864 881 2.590073 CTACAGCGAAGTGAGTGAGTG 58.410 52.381 0.00 0.00 0.00 3.51
865 882 1.542030 CCTACAGCGAAGTGAGTGAGT 59.458 52.381 0.00 0.00 0.00 3.41
866 883 1.813178 TCCTACAGCGAAGTGAGTGAG 59.187 52.381 0.00 0.00 0.00 3.51
867 884 1.905637 TCCTACAGCGAAGTGAGTGA 58.094 50.000 0.00 0.00 0.00 3.41
868 885 2.094494 ACATCCTACAGCGAAGTGAGTG 60.094 50.000 0.00 0.00 0.00 3.51
869 886 2.171840 ACATCCTACAGCGAAGTGAGT 58.828 47.619 0.00 0.00 0.00 3.41
870 887 2.949451 ACATCCTACAGCGAAGTGAG 57.051 50.000 0.00 0.00 0.00 3.51
871 888 3.353557 AGTACATCCTACAGCGAAGTGA 58.646 45.455 0.00 0.00 0.00 3.41
872 889 3.784701 AGTACATCCTACAGCGAAGTG 57.215 47.619 0.00 0.00 0.00 3.16
873 890 4.803098 AAAGTACATCCTACAGCGAAGT 57.197 40.909 0.00 0.00 0.00 3.01
874 891 4.733887 CGTAAAGTACATCCTACAGCGAAG 59.266 45.833 0.00 0.00 0.00 3.79
875 892 4.439153 CCGTAAAGTACATCCTACAGCGAA 60.439 45.833 0.00 0.00 0.00 4.70
876 893 3.065786 CCGTAAAGTACATCCTACAGCGA 59.934 47.826 0.00 0.00 0.00 4.93
877 894 3.369385 CCGTAAAGTACATCCTACAGCG 58.631 50.000 0.00 0.00 0.00 5.18
878 895 3.121544 GCCGTAAAGTACATCCTACAGC 58.878 50.000 0.00 0.00 0.00 4.40
879 896 4.380841 TGCCGTAAAGTACATCCTACAG 57.619 45.455 0.00 0.00 0.00 2.74
880 897 5.113383 CAATGCCGTAAAGTACATCCTACA 58.887 41.667 0.00 0.00 0.00 2.74
881 898 5.114081 ACAATGCCGTAAAGTACATCCTAC 58.886 41.667 0.00 0.00 0.00 3.18
882 899 5.347620 ACAATGCCGTAAAGTACATCCTA 57.652 39.130 0.00 0.00 0.00 2.94
883 900 4.216411 ACAATGCCGTAAAGTACATCCT 57.784 40.909 0.00 0.00 0.00 3.24
884 901 4.201881 GGAACAATGCCGTAAAGTACATCC 60.202 45.833 0.00 0.00 0.00 3.51
885 902 4.493545 CGGAACAATGCCGTAAAGTACATC 60.494 45.833 0.00 0.00 43.66 3.06
886 903 3.372822 CGGAACAATGCCGTAAAGTACAT 59.627 43.478 0.00 0.00 43.66 2.29
887 904 2.737783 CGGAACAATGCCGTAAAGTACA 59.262 45.455 0.00 0.00 43.66 2.90
888 905 3.378959 CGGAACAATGCCGTAAAGTAC 57.621 47.619 0.00 0.00 43.66 2.73
897 914 0.028110 GCTTCGATCGGAACAATGCC 59.972 55.000 16.41 0.00 0.00 4.40
898 915 1.009829 AGCTTCGATCGGAACAATGC 58.990 50.000 16.41 5.82 0.00 3.56
899 916 1.267732 GCAGCTTCGATCGGAACAATG 60.268 52.381 16.41 8.24 0.00 2.82
900 917 1.009829 GCAGCTTCGATCGGAACAAT 58.990 50.000 16.41 0.00 0.00 2.71
901 918 1.351430 CGCAGCTTCGATCGGAACAA 61.351 55.000 16.41 0.61 0.00 2.83
902 919 1.805539 CGCAGCTTCGATCGGAACA 60.806 57.895 16.41 0.00 0.00 3.18
903 920 1.743855 GACGCAGCTTCGATCGGAAC 61.744 60.000 13.98 0.92 0.00 3.62
904 921 1.516386 GACGCAGCTTCGATCGGAA 60.516 57.895 13.98 7.49 0.00 4.30
905 922 2.102357 GACGCAGCTTCGATCGGA 59.898 61.111 13.98 5.34 0.00 4.55
906 923 2.956964 GGACGCAGCTTCGATCGG 60.957 66.667 13.98 0.48 0.00 4.18
907 924 2.642249 TACGGACGCAGCTTCGATCG 62.642 60.000 13.98 16.82 35.79 3.69
908 925 0.930742 CTACGGACGCAGCTTCGATC 60.931 60.000 13.98 6.30 0.00 3.69
909 926 1.064296 CTACGGACGCAGCTTCGAT 59.936 57.895 13.98 0.00 0.00 3.59
910 927 2.483745 CTACGGACGCAGCTTCGA 59.516 61.111 13.98 0.00 0.00 3.71
911 928 3.248171 GCTACGGACGCAGCTTCG 61.248 66.667 3.63 3.63 34.86 3.79
912 929 2.126071 TGCTACGGACGCAGCTTC 60.126 61.111 16.74 0.00 38.63 3.86
913 930 2.125912 CTGCTACGGACGCAGCTT 60.126 61.111 16.74 0.00 46.98 3.74
917 934 4.476410 CGCTCTGCTACGGACGCA 62.476 66.667 0.00 0.00 35.80 5.24
918 935 4.175489 TCGCTCTGCTACGGACGC 62.175 66.667 0.00 0.00 0.00 5.19
919 936 1.426816 TAGTCGCTCTGCTACGGACG 61.427 60.000 0.00 0.00 29.41 4.79
920 937 0.305313 CTAGTCGCTCTGCTACGGAC 59.695 60.000 0.00 0.00 29.41 4.79
921 938 1.437772 GCTAGTCGCTCTGCTACGGA 61.438 60.000 0.00 0.00 35.14 4.69
922 939 1.009449 GCTAGTCGCTCTGCTACGG 60.009 63.158 0.00 0.00 35.14 4.02
923 940 4.599417 GCTAGTCGCTCTGCTACG 57.401 61.111 0.00 0.00 35.14 3.51
932 949 3.550436 GGATAAGTGTGGTAGCTAGTCGC 60.550 52.174 0.00 0.00 39.57 5.19
933 950 3.630769 TGGATAAGTGTGGTAGCTAGTCG 59.369 47.826 0.00 0.00 0.00 4.18
956 973 1.146358 GCCGTGTGCCGATCTAGTTC 61.146 60.000 0.00 0.00 39.56 3.01
985 1002 1.817099 CCATGCCGAAGCTGAGACC 60.817 63.158 0.00 0.00 40.80 3.85
1386 1483 2.732619 GGACGCCGGGAAGAAGGAT 61.733 63.158 2.18 0.00 0.00 3.24
1434 1531 0.982704 CATCCTCTATGAGCTGGGGG 59.017 60.000 0.00 0.00 37.86 5.40
1668 3528 4.562757 GGGACGCCTGCACTTATATATTCA 60.563 45.833 0.00 0.00 0.00 2.57
1671 3531 3.611766 GGGACGCCTGCACTTATATAT 57.388 47.619 0.00 0.00 0.00 0.86
2031 4941 2.126031 GGCTCGAAGACGGTGGAC 60.126 66.667 0.00 0.00 40.21 4.02
2238 5161 6.029346 ACAATGAAATCAATGGTGAAGACC 57.971 37.500 3.72 0.00 43.48 3.85
2266 5196 9.832445 GGATCATGAAATGGAAGTTACTACTTA 57.168 33.333 0.00 0.00 46.73 2.24
2267 5197 8.328758 TGGATCATGAAATGGAAGTTACTACTT 58.671 33.333 0.00 0.00 46.73 2.24
2268 5198 7.861629 TGGATCATGAAATGGAAGTTACTACT 58.138 34.615 0.00 0.00 46.73 2.57
2269 5199 8.682936 ATGGATCATGAAATGGAAGTTACTAC 57.317 34.615 0.00 0.00 46.73 2.73
2270 5200 7.657354 CGATGGATCATGAAATGGAAGTTACTA 59.343 37.037 0.00 0.00 46.73 1.82
2271 5201 6.484643 CGATGGATCATGAAATGGAAGTTACT 59.515 38.462 0.00 0.00 46.73 2.24
2598 5600 3.443925 CTCGCCGAGACTCCTGCA 61.444 66.667 8.82 0.00 0.00 4.41
2599 5601 4.200283 CCTCGCCGAGACTCCTGC 62.200 72.222 17.19 0.00 0.00 4.85
2600 5602 3.522731 CCCTCGCCGAGACTCCTG 61.523 72.222 17.19 0.00 0.00 3.86
2641 5643 5.308237 TCCTTTAGGAGGCTAATGAATCTCC 59.692 44.000 0.00 0.00 45.87 3.71
2693 5700 2.430610 GGAGCGAGCATCCTGACCT 61.431 63.158 0.00 0.00 33.77 3.85
2743 5751 2.484264 GACAGCCGGGCATATTTGTATC 59.516 50.000 23.09 1.72 0.00 2.24
2746 5754 0.034574 TGACAGCCGGGCATATTTGT 60.035 50.000 23.09 16.16 0.00 2.83
2747 5755 1.321474 ATGACAGCCGGGCATATTTG 58.679 50.000 23.09 12.73 0.00 2.32
2748 5756 2.949177 TATGACAGCCGGGCATATTT 57.051 45.000 23.09 5.42 0.00 1.40
2749 5757 2.371841 TCTTATGACAGCCGGGCATATT 59.628 45.455 23.09 1.10 0.00 1.28
2750 5758 1.977854 TCTTATGACAGCCGGGCATAT 59.022 47.619 23.09 11.60 0.00 1.78
2751 5759 1.344438 CTCTTATGACAGCCGGGCATA 59.656 52.381 23.09 7.25 0.00 3.14
2752 5760 0.107456 CTCTTATGACAGCCGGGCAT 59.893 55.000 23.09 8.88 0.00 4.40
2753 5761 0.975556 TCTCTTATGACAGCCGGGCA 60.976 55.000 23.09 0.00 0.00 5.36
2754 5762 0.394565 ATCTCTTATGACAGCCGGGC 59.605 55.000 12.11 12.11 0.00 6.13
2755 5763 2.103094 TCAATCTCTTATGACAGCCGGG 59.897 50.000 2.18 0.00 0.00 5.73
2756 5764 3.126831 GTCAATCTCTTATGACAGCCGG 58.873 50.000 0.00 0.00 44.19 6.13
2757 5765 3.801050 CAGTCAATCTCTTATGACAGCCG 59.199 47.826 8.43 0.00 46.55 5.52
2758 5766 4.125703 CCAGTCAATCTCTTATGACAGCC 58.874 47.826 8.43 0.00 46.55 4.85
2759 5767 5.016051 TCCAGTCAATCTCTTATGACAGC 57.984 43.478 8.43 0.00 46.55 4.40
2760 5768 5.453057 CCCTCCAGTCAATCTCTTATGACAG 60.453 48.000 8.43 0.68 46.55 3.51
2761 5769 4.406972 CCCTCCAGTCAATCTCTTATGACA 59.593 45.833 8.43 0.00 46.55 3.58
2762 5770 4.407296 ACCCTCCAGTCAATCTCTTATGAC 59.593 45.833 0.00 0.00 44.92 3.06
2763 5771 4.624913 ACCCTCCAGTCAATCTCTTATGA 58.375 43.478 0.00 0.00 0.00 2.15
2764 5772 5.363939 GAACCCTCCAGTCAATCTCTTATG 58.636 45.833 0.00 0.00 0.00 1.90
2765 5773 4.410555 GGAACCCTCCAGTCAATCTCTTAT 59.589 45.833 0.00 0.00 41.96 1.73
2766 5774 3.775316 GGAACCCTCCAGTCAATCTCTTA 59.225 47.826 0.00 0.00 41.96 2.10
2767 5775 2.573915 GGAACCCTCCAGTCAATCTCTT 59.426 50.000 0.00 0.00 41.96 2.85
2768 5776 2.192263 GGAACCCTCCAGTCAATCTCT 58.808 52.381 0.00 0.00 41.96 3.10
2769 5777 2.700722 GGAACCCTCCAGTCAATCTC 57.299 55.000 0.00 0.00 41.96 2.75
2779 5787 2.761767 GAGAGTCTTAGTGGAACCCTCC 59.238 54.545 0.00 0.00 42.81 4.30
2780 5788 2.761767 GGAGAGTCTTAGTGGAACCCTC 59.238 54.545 0.00 0.00 37.80 4.30
2781 5789 2.822697 GGAGAGTCTTAGTGGAACCCT 58.177 52.381 0.00 0.00 37.80 4.34
2782 5790 1.477295 CGGAGAGTCTTAGTGGAACCC 59.523 57.143 0.00 0.00 37.80 4.11
2783 5791 2.444421 TCGGAGAGTCTTAGTGGAACC 58.556 52.381 0.00 0.00 37.80 3.62
2797 5805 1.356738 TCTTAGTGGAACCCTCGGAGA 59.643 52.381 6.58 0.00 37.80 3.71
2798 5806 1.477295 GTCTTAGTGGAACCCTCGGAG 59.523 57.143 0.00 0.00 37.80 4.63
2799 5807 1.076677 AGTCTTAGTGGAACCCTCGGA 59.923 52.381 0.00 0.00 37.80 4.55
2800 5808 1.477295 GAGTCTTAGTGGAACCCTCGG 59.523 57.143 0.00 0.00 37.80 4.63
2801 5809 2.424246 GAGAGTCTTAGTGGAACCCTCG 59.576 54.545 0.00 0.00 37.80 4.63
2802 5810 2.761767 GGAGAGTCTTAGTGGAACCCTC 59.238 54.545 0.00 0.00 37.80 4.30
2803 5811 2.822697 GGAGAGTCTTAGTGGAACCCT 58.177 52.381 0.00 0.00 37.80 4.34
2804 5812 1.477295 CGGAGAGTCTTAGTGGAACCC 59.523 57.143 0.00 0.00 37.80 4.11
2805 5813 2.444421 TCGGAGAGTCTTAGTGGAACC 58.556 52.381 0.00 0.00 37.80 3.62
2913 5921 3.375443 TAGACGGAGGAGGGGCAGG 62.375 68.421 0.00 0.00 0.00 4.85
2914 5922 1.830408 CTAGACGGAGGAGGGGCAG 60.830 68.421 0.00 0.00 0.00 4.85
2915 5923 2.279073 CTAGACGGAGGAGGGGCA 59.721 66.667 0.00 0.00 0.00 5.36
2916 5924 2.522193 CCTAGACGGAGGAGGGGC 60.522 72.222 0.00 0.00 39.15 5.80
2917 5925 2.522193 GCCTAGACGGAGGAGGGG 60.522 72.222 4.59 0.00 39.15 4.79
2918 5926 2.522193 GGCCTAGACGGAGGAGGG 60.522 72.222 0.00 0.00 39.15 4.30
2919 5927 2.907917 CGGCCTAGACGGAGGAGG 60.908 72.222 0.00 0.00 39.15 4.30
2920 5928 3.597728 GCGGCCTAGACGGAGGAG 61.598 72.222 0.00 0.00 39.15 3.69
2923 5931 3.597728 GAGGCGGCCTAGACGGAG 61.598 72.222 23.92 0.00 32.98 4.63
2994 6002 4.191015 GATGGGGAAGGCGGGGTC 62.191 72.222 0.00 0.00 0.00 4.46
2995 6003 4.760220 AGATGGGGAAGGCGGGGT 62.760 66.667 0.00 0.00 0.00 4.95
2996 6004 3.878667 GAGATGGGGAAGGCGGGG 61.879 72.222 0.00 0.00 0.00 5.73
2997 6005 3.878667 GGAGATGGGGAAGGCGGG 61.879 72.222 0.00 0.00 0.00 6.13
2998 6006 3.878667 GGGAGATGGGGAAGGCGG 61.879 72.222 0.00 0.00 0.00 6.13
2999 6007 3.878667 GGGGAGATGGGGAAGGCG 61.879 72.222 0.00 0.00 0.00 5.52
3000 6008 3.502875 GGGGGAGATGGGGAAGGC 61.503 72.222 0.00 0.00 0.00 4.35
3491 6499 4.586235 ACAGCCACCCAGCACCAC 62.586 66.667 0.00 0.00 34.23 4.16
3492 6500 4.269523 GACAGCCACCCAGCACCA 62.270 66.667 0.00 0.00 34.23 4.17
3494 6502 4.314440 TCGACAGCCACCCAGCAC 62.314 66.667 0.00 0.00 34.23 4.40
3495 6503 4.314440 GTCGACAGCCACCCAGCA 62.314 66.667 11.55 0.00 34.23 4.41
3524 6532 4.873129 CGACGTGCCCGGATCTGG 62.873 72.222 14.26 14.26 38.78 3.86
3535 6543 4.838152 CAGATGGGGCCCGACGTG 62.838 72.222 19.83 9.40 0.00 4.49
3570 6578 4.096003 AACGAGACCATGCCGGGG 62.096 66.667 2.18 0.00 40.22 5.73
3571 6579 2.819595 CAACGAGACCATGCCGGG 60.820 66.667 2.18 0.00 40.22 5.73
3572 6580 2.047274 ACAACGAGACCATGCCGG 60.047 61.111 0.00 0.00 42.50 6.13
3573 6581 1.079819 AGACAACGAGACCATGCCG 60.080 57.895 0.00 0.00 0.00 5.69
3574 6582 1.639298 GCAGACAACGAGACCATGCC 61.639 60.000 0.00 0.00 0.00 4.40
3575 6583 1.790387 GCAGACAACGAGACCATGC 59.210 57.895 0.00 0.00 0.00 4.06
3576 6584 1.354337 CCGCAGACAACGAGACCATG 61.354 60.000 0.00 0.00 0.00 3.66
3577 6585 1.079819 CCGCAGACAACGAGACCAT 60.080 57.895 0.00 0.00 0.00 3.55
3578 6586 2.338620 CCGCAGACAACGAGACCA 59.661 61.111 0.00 0.00 0.00 4.02
3579 6587 3.112709 GCCGCAGACAACGAGACC 61.113 66.667 0.00 0.00 0.00 3.85
3580 6588 3.470567 CGCCGCAGACAACGAGAC 61.471 66.667 0.00 0.00 0.00 3.36
3594 6602 4.821589 CCTTCTCCTCACCGCGCC 62.822 72.222 0.00 0.00 0.00 6.53
3595 6603 3.708220 CTCCTTCTCCTCACCGCGC 62.708 68.421 0.00 0.00 0.00 6.86
3596 6604 2.492090 CTCCTTCTCCTCACCGCG 59.508 66.667 0.00 0.00 0.00 6.46
3597 6605 2.185608 GCTCCTTCTCCTCACCGC 59.814 66.667 0.00 0.00 0.00 5.68
3598 6606 2.492090 CGCTCCTTCTCCTCACCG 59.508 66.667 0.00 0.00 0.00 4.94
3599 6607 2.896443 CCGCTCCTTCTCCTCACC 59.104 66.667 0.00 0.00 0.00 4.02
3600 6608 2.185608 GCCGCTCCTTCTCCTCAC 59.814 66.667 0.00 0.00 0.00 3.51
3601 6609 2.038007 AGCCGCTCCTTCTCCTCA 59.962 61.111 0.00 0.00 0.00 3.86
3602 6610 2.811799 GAGCCGCTCCTTCTCCTC 59.188 66.667 9.42 0.00 0.00 3.71
3603 6611 3.144193 CGAGCCGCTCCTTCTCCT 61.144 66.667 14.85 0.00 0.00 3.69
3604 6612 4.214327 CCGAGCCGCTCCTTCTCC 62.214 72.222 14.85 0.00 0.00 3.71
3605 6613 3.141488 TCCGAGCCGCTCCTTCTC 61.141 66.667 14.85 0.00 0.00 2.87
3606 6614 3.453679 GTCCGAGCCGCTCCTTCT 61.454 66.667 14.85 0.00 0.00 2.85
3607 6615 3.007973 AAGTCCGAGCCGCTCCTTC 62.008 63.158 14.85 5.20 0.00 3.46
3608 6616 2.997897 AAGTCCGAGCCGCTCCTT 60.998 61.111 14.85 9.36 0.00 3.36
3609 6617 3.764466 CAAGTCCGAGCCGCTCCT 61.764 66.667 14.85 3.38 0.00 3.69
3610 6618 4.821589 CCAAGTCCGAGCCGCTCC 62.822 72.222 14.85 0.91 0.00 4.70
3611 6619 4.821589 CCCAAGTCCGAGCCGCTC 62.822 72.222 10.59 10.59 0.00 5.03
3617 6625 4.796231 CGACGCCCCAAGTCCGAG 62.796 72.222 0.00 0.00 35.33 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.