Multiple sequence alignment - TraesCS7B01G104300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G104300 chr7B 100.000 2579 0 0 1 2579 119886206 119888784 0.000000e+00 4763
1 TraesCS7B01G104300 chr7B 90.271 442 39 3 1005 1444 119727928 119728367 2.230000e-160 575
2 TraesCS7B01G104300 chr7B 89.238 223 20 3 1440 1662 119733947 119734165 2.530000e-70 276
3 TraesCS7B01G104300 chr2D 86.649 749 85 15 1 742 646368674 646369414 0.000000e+00 815
4 TraesCS7B01G104300 chr2D 84.627 683 71 25 68 737 276936338 276935677 0.000000e+00 649
5 TraesCS7B01G104300 chr2D 83.936 691 80 23 68 747 285349423 285350093 1.300000e-177 632
6 TraesCS7B01G104300 chr6D 86.100 741 75 14 1 737 25855333 25856049 0.000000e+00 773
7 TraesCS7B01G104300 chr6D 85.191 682 68 25 68 737 464696477 464697137 0.000000e+00 669
8 TraesCS7B01G104300 chr6D 84.467 676 76 23 72 737 446133713 446133057 7.780000e-180 640
9 TraesCS7B01G104300 chr6D 92.566 417 26 5 1705 2117 3319208 3319623 6.140000e-166 593
10 TraesCS7B01G104300 chr7D 87.743 669 67 5 1005 1662 159075704 159076368 0.000000e+00 767
11 TraesCS7B01G104300 chr7D 90.586 563 21 14 770 1321 159352159 159352700 0.000000e+00 717
12 TraesCS7B01G104300 chr7D 94.556 349 17 2 1310 1658 159352723 159353069 2.920000e-149 538
13 TraesCS7B01G104300 chr7D 92.500 360 22 5 1 357 364624670 364625027 6.370000e-141 510
14 TraesCS7B01G104300 chr7D 91.944 360 24 5 1 357 141566603 141566246 1.380000e-137 499
15 TraesCS7B01G104300 chr7D 90.667 375 26 3 2208 2575 159353077 159353449 8.290000e-135 490
16 TraesCS7B01G104300 chr5D 84.242 679 79 24 68 737 432174076 432173417 1.010000e-178 636
17 TraesCS7B01G104300 chr5B 87.293 543 57 12 200 736 432263916 432263380 6.100000e-171 610
18 TraesCS7B01G104300 chr3A 85.279 591 69 17 136 719 597186684 597187263 6.140000e-166 593
19 TraesCS7B01G104300 chr3A 92.019 426 25 6 1705 2123 727176954 727176531 7.950000e-165 590
20 TraesCS7B01G104300 chr3A 91.667 360 23 3 1 354 708919708 708920066 2.310000e-135 492
21 TraesCS7B01G104300 chr1A 91.962 423 29 5 1705 2123 37618818 37619239 2.860000e-164 588
22 TraesCS7B01G104300 chr1A 89.737 380 31 6 4 377 31156706 31156329 1.800000e-131 479
23 TraesCS7B01G104300 chr6A 91.765 425 30 5 1704 2124 602356508 602356931 1.030000e-163 586
24 TraesCS7B01G104300 chr3D 91.962 423 27 6 1705 2123 61053137 61052718 1.030000e-163 586
25 TraesCS7B01G104300 chr7A 91.745 424 30 5 1704 2123 692756671 692756249 3.700000e-163 584
26 TraesCS7B01G104300 chr7A 91.667 360 25 5 1 357 182180121 182179764 6.410000e-136 494
27 TraesCS7B01G104300 chr7A 92.023 351 27 1 1230 1579 159507451 159507101 2.310000e-135 492
28 TraesCS7B01G104300 chr7A 89.418 378 32 2 2209 2579 159506569 159506193 1.080000e-128 470
29 TraesCS7B01G104300 chr7A 81.725 487 49 25 784 1234 159513400 159512918 1.130000e-98 370
30 TraesCS7B01G104300 chr7A 95.098 102 2 3 1580 1681 159506801 159506703 9.550000e-35 158
31 TraesCS7B01G104300 chr6B 91.569 427 31 5 1703 2125 35812903 35813328 3.700000e-163 584
32 TraesCS7B01G104300 chr5A 91.745 424 30 5 1704 2123 450435623 450436045 3.700000e-163 584
33 TraesCS7B01G104300 chr2A 91.745 424 30 5 1704 2123 688238427 688238849 3.700000e-163 584
34 TraesCS7B01G104300 chr4D 91.667 360 25 5 1 357 405709783 405710140 6.410000e-136 494


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G104300 chr7B 119886206 119888784 2578 False 4763.000000 4763 100.000000 1 2579 1 chr7B.!!$F3 2578
1 TraesCS7B01G104300 chr2D 646368674 646369414 740 False 815.000000 815 86.649000 1 742 1 chr2D.!!$F2 741
2 TraesCS7B01G104300 chr2D 276935677 276936338 661 True 649.000000 649 84.627000 68 737 1 chr2D.!!$R1 669
3 TraesCS7B01G104300 chr2D 285349423 285350093 670 False 632.000000 632 83.936000 68 747 1 chr2D.!!$F1 679
4 TraesCS7B01G104300 chr6D 25855333 25856049 716 False 773.000000 773 86.100000 1 737 1 chr6D.!!$F2 736
5 TraesCS7B01G104300 chr6D 464696477 464697137 660 False 669.000000 669 85.191000 68 737 1 chr6D.!!$F3 669
6 TraesCS7B01G104300 chr6D 446133057 446133713 656 True 640.000000 640 84.467000 72 737 1 chr6D.!!$R1 665
7 TraesCS7B01G104300 chr7D 159075704 159076368 664 False 767.000000 767 87.743000 1005 1662 1 chr7D.!!$F1 657
8 TraesCS7B01G104300 chr7D 159352159 159353449 1290 False 581.666667 717 91.936333 770 2575 3 chr7D.!!$F3 1805
9 TraesCS7B01G104300 chr5D 432173417 432174076 659 True 636.000000 636 84.242000 68 737 1 chr5D.!!$R1 669
10 TraesCS7B01G104300 chr5B 432263380 432263916 536 True 610.000000 610 87.293000 200 736 1 chr5B.!!$R1 536
11 TraesCS7B01G104300 chr3A 597186684 597187263 579 False 593.000000 593 85.279000 136 719 1 chr3A.!!$F1 583
12 TraesCS7B01G104300 chr7A 159506193 159507451 1258 True 373.333333 492 92.179667 1230 2579 3 chr7A.!!$R4 1349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 1248 0.107703 ATCCATCGCACGACCACAAT 60.108 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2868 0.033781 GCAAACAAAGGCAGCATGGA 59.966 50.0 0.0 0.0 35.86 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.725251 AGTTGCCATGATTTGAAAACTTTAGA 58.275 30.769 0.00 0.00 30.92 2.10
42 43 7.869429 AGTTGCCATGATTTGAAAACTTTAGAG 59.131 33.333 0.00 0.00 30.92 2.43
43 44 6.690530 TGCCATGATTTGAAAACTTTAGAGG 58.309 36.000 0.00 0.00 0.00 3.69
44 45 6.267471 TGCCATGATTTGAAAACTTTAGAGGT 59.733 34.615 0.00 0.00 0.00 3.85
45 46 6.587608 GCCATGATTTGAAAACTTTAGAGGTG 59.412 38.462 0.00 0.00 0.00 4.00
46 47 7.092716 CCATGATTTGAAAACTTTAGAGGTGG 58.907 38.462 0.00 0.00 0.00 4.61
47 48 6.084326 TGATTTGAAAACTTTAGAGGTGGC 57.916 37.500 0.00 0.00 0.00 5.01
48 49 4.929819 TTTGAAAACTTTAGAGGTGGCC 57.070 40.909 0.00 0.00 0.00 5.36
49 50 3.586470 TGAAAACTTTAGAGGTGGCCA 57.414 42.857 0.00 0.00 0.00 5.36
50 51 3.219281 TGAAAACTTTAGAGGTGGCCAC 58.781 45.455 28.57 28.57 0.00 5.01
63 64 3.412237 GTGGCCACCTTCTAACACTAA 57.588 47.619 26.31 0.00 0.00 2.24
64 65 3.335579 GTGGCCACCTTCTAACACTAAG 58.664 50.000 26.31 0.00 0.00 2.18
65 66 2.976882 TGGCCACCTTCTAACACTAAGT 59.023 45.455 0.00 0.00 0.00 2.24
66 67 4.020839 GTGGCCACCTTCTAACACTAAGTA 60.021 45.833 26.31 0.00 0.00 2.24
67 68 4.222145 TGGCCACCTTCTAACACTAAGTAG 59.778 45.833 0.00 0.00 0.00 2.57
68 69 4.222366 GGCCACCTTCTAACACTAAGTAGT 59.778 45.833 0.00 0.00 36.90 2.73
69 70 5.279859 GGCCACCTTCTAACACTAAGTAGTT 60.280 44.000 0.00 0.00 33.46 2.24
70 71 6.228995 GCCACCTTCTAACACTAAGTAGTTT 58.771 40.000 0.00 0.00 33.46 2.66
72 73 6.872547 CCACCTTCTAACACTAAGTAGTTTCC 59.127 42.308 0.00 0.00 33.46 3.13
74 75 8.095169 CACCTTCTAACACTAAGTAGTTTCCAT 58.905 37.037 0.00 0.00 33.46 3.41
99 111 7.909518 TGTATGGTATGGTTTACTACAGTTGT 58.090 34.615 0.00 0.00 0.00 3.32
101 113 5.472148 TGGTATGGTTTACTACAGTTGTCG 58.528 41.667 0.00 0.00 0.00 4.35
113 125 7.259290 ACTACAGTTGTCGTGATTTGAAAAT 57.741 32.000 0.00 0.00 0.00 1.82
148 160 4.020485 CCACCTACTAACACTAGGCAGTTT 60.020 45.833 0.00 0.00 35.04 2.66
149 161 5.512576 CCACCTACTAACACTAGGCAGTTTT 60.513 44.000 0.00 0.00 35.04 2.43
158 170 2.299297 ACTAGGCAGTTTTCGTGTAGCT 59.701 45.455 0.00 0.00 0.00 3.32
207 308 4.342951 TGTTCGGGTAAAAGAGAGAGTTGA 59.657 41.667 0.00 0.00 0.00 3.18
279 469 0.798776 GGCAACTGACATGTTCGGAG 59.201 55.000 0.00 0.00 34.26 4.63
280 470 1.512926 GCAACTGACATGTTCGGAGT 58.487 50.000 0.00 0.00 34.26 3.85
306 496 5.581126 AAAAAGTTGTCATCTGCTCACAA 57.419 34.783 0.00 0.00 0.00 3.33
307 497 4.825546 AAAGTTGTCATCTGCTCACAAG 57.174 40.909 0.00 0.00 30.72 3.16
317 507 4.192000 CTCACAAGCACGCTAGGG 57.808 61.111 5.05 5.05 0.00 3.53
365 555 1.586154 GGCAACTGACATGTTCGGGG 61.586 60.000 0.00 0.00 34.44 5.73
366 556 0.889186 GCAACTGACATGTTCGGGGT 60.889 55.000 0.00 0.00 34.44 4.95
367 557 1.609580 GCAACTGACATGTTCGGGGTA 60.610 52.381 0.00 0.00 34.44 3.69
396 586 7.516198 AAGAAAGTTGTCATCTGCTTACAAT 57.484 32.000 0.00 0.00 35.72 2.71
397 587 8.621532 AAGAAAGTTGTCATCTGCTTACAATA 57.378 30.769 0.00 0.00 35.72 1.90
399 589 9.236006 AGAAAGTTGTCATCTGCTTACAATAAT 57.764 29.630 0.00 0.00 35.72 1.28
452 815 3.433984 TGGCAACTGGCAGCTTGGA 62.434 57.895 15.89 0.00 46.12 3.53
477 840 0.612229 AGAGAGGAGACGGACGTGTA 59.388 55.000 0.53 0.00 0.00 2.90
561 925 1.153147 TGCTAAACGCCCACACACA 60.153 52.632 0.00 0.00 38.05 3.72
563 927 1.946267 CTAAACGCCCACACACACC 59.054 57.895 0.00 0.00 0.00 4.16
564 928 1.837538 CTAAACGCCCACACACACCG 61.838 60.000 0.00 0.00 0.00 4.94
587 952 0.464735 CCTCCCGTGTGGTGAAACAA 60.465 55.000 0.00 0.00 39.98 2.83
655 1020 1.827344 TGGCACCACAAACATGTCAAA 59.173 42.857 0.00 0.00 0.00 2.69
657 1022 2.607180 GGCACCACAAACATGTCAAAAC 59.393 45.455 0.00 0.00 0.00 2.43
660 1025 4.742417 CACCACAAACATGTCAAAACTCA 58.258 39.130 0.00 0.00 0.00 3.41
668 1033 0.950836 TGTCAAAACTCATGCACCCG 59.049 50.000 0.00 0.00 0.00 5.28
680 1045 2.468670 GCACCCGCATATGAACGCA 61.469 57.895 6.97 0.00 38.36 5.24
737 1102 0.180642 TGTGGGCGTTAGTGTTTCCA 59.819 50.000 0.00 0.00 0.00 3.53
742 1107 3.117794 GGGCGTTAGTGTTTCCAAAAAC 58.882 45.455 0.00 0.00 44.18 2.43
754 1119 6.230849 GTTTCCAAAAACAAAAAGGTTCGT 57.769 33.333 0.00 0.00 43.52 3.85
755 1120 6.660722 GTTTCCAAAAACAAAAAGGTTCGTT 58.339 32.000 0.00 0.00 43.52 3.85
756 1121 6.862711 TTCCAAAAACAAAAAGGTTCGTTT 57.137 29.167 0.00 0.00 33.15 3.60
757 1122 6.862711 TCCAAAAACAAAAAGGTTCGTTTT 57.137 29.167 0.00 0.00 41.89 2.43
758 1123 7.958053 TCCAAAAACAAAAAGGTTCGTTTTA 57.042 28.000 0.00 0.00 39.86 1.52
759 1124 7.794880 TCCAAAAACAAAAAGGTTCGTTTTAC 58.205 30.769 0.00 0.00 39.86 2.01
760 1125 7.440255 TCCAAAAACAAAAAGGTTCGTTTTACA 59.560 29.630 0.00 0.00 39.86 2.41
761 1126 7.742525 CCAAAAACAAAAAGGTTCGTTTTACAG 59.257 33.333 0.00 1.86 39.86 2.74
762 1127 6.397831 AAACAAAAAGGTTCGTTTTACAGC 57.602 33.333 4.14 0.00 0.00 4.40
763 1128 5.061920 ACAAAAAGGTTCGTTTTACAGCA 57.938 34.783 4.14 0.00 0.00 4.41
764 1129 5.099575 ACAAAAAGGTTCGTTTTACAGCAG 58.900 37.500 4.14 0.00 0.00 4.24
765 1130 4.976224 AAAAGGTTCGTTTTACAGCAGT 57.024 36.364 2.13 0.00 0.00 4.40
766 1131 6.127952 ACAAAAAGGTTCGTTTTACAGCAGTA 60.128 34.615 4.14 0.00 0.00 2.74
767 1132 5.668558 AAAGGTTCGTTTTACAGCAGTAG 57.331 39.130 0.00 0.00 0.00 2.57
768 1133 4.332428 AGGTTCGTTTTACAGCAGTAGT 57.668 40.909 0.00 0.00 0.00 2.73
796 1161 0.763223 AGTGGGTCTCGACTTGGGTT 60.763 55.000 0.00 0.00 0.00 4.11
861 1228 2.089201 GTATGTTACCACAGCCCCAAC 58.911 52.381 0.00 0.00 35.94 3.77
878 1245 1.019278 AACATCCATCGCACGACCAC 61.019 55.000 0.00 0.00 0.00 4.16
879 1246 1.447663 CATCCATCGCACGACCACA 60.448 57.895 0.00 0.00 0.00 4.17
880 1247 1.018752 CATCCATCGCACGACCACAA 61.019 55.000 0.00 0.00 0.00 3.33
881 1248 0.107703 ATCCATCGCACGACCACAAT 60.108 50.000 0.00 0.00 0.00 2.71
882 1249 0.739462 TCCATCGCACGACCACAATC 60.739 55.000 0.00 0.00 0.00 2.67
884 1251 1.075979 CATCGCACGACCACAATCGA 61.076 55.000 1.63 0.00 45.13 3.59
885 1252 0.179111 ATCGCACGACCACAATCGAT 60.179 50.000 1.63 0.00 45.13 3.59
886 1253 0.800683 TCGCACGACCACAATCGATC 60.801 55.000 0.00 0.00 45.13 3.69
887 1254 1.631072 GCACGACCACAATCGATCG 59.369 57.895 9.36 9.36 45.13 3.69
889 1256 0.914551 CACGACCACAATCGATCGTC 59.085 55.000 15.94 2.15 45.48 4.20
890 1257 0.524414 ACGACCACAATCGATCGTCA 59.476 50.000 15.94 0.00 44.01 4.35
891 1258 1.191944 CGACCACAATCGATCGTCAG 58.808 55.000 15.94 8.33 45.13 3.51
892 1259 0.924090 GACCACAATCGATCGTCAGC 59.076 55.000 15.94 0.00 0.00 4.26
893 1260 0.246360 ACCACAATCGATCGTCAGCA 59.754 50.000 15.94 0.00 0.00 4.41
894 1261 1.337728 ACCACAATCGATCGTCAGCAA 60.338 47.619 15.94 0.00 0.00 3.91
895 1262 1.731709 CCACAATCGATCGTCAGCAAA 59.268 47.619 15.94 0.00 0.00 3.68
896 1263 2.222886 CCACAATCGATCGTCAGCAAAG 60.223 50.000 15.94 0.82 0.00 2.77
897 1264 2.667969 CACAATCGATCGTCAGCAAAGA 59.332 45.455 15.94 0.00 0.00 2.52
898 1265 2.926200 ACAATCGATCGTCAGCAAAGAG 59.074 45.455 15.94 0.00 0.00 2.85
899 1266 2.215907 ATCGATCGTCAGCAAAGAGG 57.784 50.000 15.94 0.00 0.00 3.69
900 1267 0.173481 TCGATCGTCAGCAAAGAGGG 59.827 55.000 15.94 0.00 0.00 4.30
1176 1554 4.475135 GGCTTCCCGGAGTCTGGC 62.475 72.222 13.07 0.74 0.00 4.85
1221 1599 2.992543 GCTAGCGATTGACAGGATCATC 59.007 50.000 0.00 0.00 37.11 2.92
1321 1699 1.165270 GATGTTGAAGAACCCCACCG 58.835 55.000 0.00 0.00 0.00 4.94
1322 1700 0.251165 ATGTTGAAGAACCCCACCGG 60.251 55.000 0.00 0.00 37.81 5.28
1350 1762 2.357517 CTCGGCGTTGAAGCTGGT 60.358 61.111 6.85 0.00 43.39 4.00
1462 1874 1.143305 GGACAAGATCCGCATCGATG 58.857 55.000 21.27 21.27 37.88 3.84
1538 1950 1.432251 CGGACGAGGAATGCTACGT 59.568 57.895 0.00 0.00 41.57 3.57
1634 2345 3.474600 AGATTTGGCTCGATGAATCCAG 58.525 45.455 0.00 0.00 30.67 3.86
1667 2378 3.304391 CCGTTGTGTCAACCCTATTTGTG 60.304 47.826 6.98 0.00 0.00 3.33
1669 2380 4.201970 CGTTGTGTCAACCCTATTTGTGTT 60.202 41.667 6.98 0.00 0.00 3.32
1670 2381 5.656480 GTTGTGTCAACCCTATTTGTGTTT 58.344 37.500 1.70 0.00 0.00 2.83
1671 2382 5.255710 TGTGTCAACCCTATTTGTGTTTG 57.744 39.130 0.00 0.00 0.00 2.93
1672 2383 4.950475 TGTGTCAACCCTATTTGTGTTTGA 59.050 37.500 0.00 0.00 0.00 2.69
1673 2384 5.163602 TGTGTCAACCCTATTTGTGTTTGAC 60.164 40.000 5.51 5.51 0.00 3.18
1674 2385 5.067283 GTGTCAACCCTATTTGTGTTTGACT 59.933 40.000 12.14 0.00 0.00 3.41
1675 2386 6.261381 GTGTCAACCCTATTTGTGTTTGACTA 59.739 38.462 12.14 0.00 0.00 2.59
1676 2387 7.001674 TGTCAACCCTATTTGTGTTTGACTAT 58.998 34.615 12.14 0.00 0.00 2.12
1677 2388 7.174253 TGTCAACCCTATTTGTGTTTGACTATC 59.826 37.037 12.14 0.00 0.00 2.08
1678 2389 7.390718 GTCAACCCTATTTGTGTTTGACTATCT 59.609 37.037 5.27 0.00 0.00 1.98
1679 2390 8.598916 TCAACCCTATTTGTGTTTGACTATCTA 58.401 33.333 0.00 0.00 0.00 1.98
1707 2418 8.284945 TCTATCTAAAAAGTTAGTACTGCGGA 57.715 34.615 5.39 0.00 38.33 5.54
1708 2419 8.910944 TCTATCTAAAAAGTTAGTACTGCGGAT 58.089 33.333 5.39 0.00 38.33 4.18
1711 2422 8.867112 TCTAAAAAGTTAGTACTGCGGATATG 57.133 34.615 5.39 0.00 38.33 1.78
1712 2423 6.920569 AAAAAGTTAGTACTGCGGATATGG 57.079 37.500 5.39 0.00 34.01 2.74
1713 2424 5.609533 AAAGTTAGTACTGCGGATATGGT 57.390 39.130 5.39 0.00 34.01 3.55
1714 2425 4.850347 AGTTAGTACTGCGGATATGGTC 57.150 45.455 5.39 0.00 31.99 4.02
1715 2426 4.471548 AGTTAGTACTGCGGATATGGTCT 58.528 43.478 5.39 0.00 31.99 3.85
1716 2427 4.894114 AGTTAGTACTGCGGATATGGTCTT 59.106 41.667 5.39 0.00 31.99 3.01
1717 2428 5.363005 AGTTAGTACTGCGGATATGGTCTTT 59.637 40.000 5.39 0.00 31.99 2.52
1718 2429 4.060038 AGTACTGCGGATATGGTCTTTG 57.940 45.455 0.00 0.00 0.00 2.77
1719 2430 2.332063 ACTGCGGATATGGTCTTTGG 57.668 50.000 0.00 0.00 0.00 3.28
1720 2431 1.837439 ACTGCGGATATGGTCTTTGGA 59.163 47.619 0.00 0.00 0.00 3.53
1721 2432 2.158900 ACTGCGGATATGGTCTTTGGAG 60.159 50.000 0.00 0.00 0.00 3.86
1722 2433 1.140852 TGCGGATATGGTCTTTGGAGG 59.859 52.381 0.00 0.00 0.00 4.30
1723 2434 1.884235 CGGATATGGTCTTTGGAGGC 58.116 55.000 0.00 0.00 0.00 4.70
1728 2439 2.436824 GGTCTTTGGAGGCCGAGC 60.437 66.667 0.00 0.00 38.04 5.03
1729 2440 2.665603 GTCTTTGGAGGCCGAGCT 59.334 61.111 0.00 0.00 0.00 4.09
1730 2441 1.448717 GTCTTTGGAGGCCGAGCTC 60.449 63.158 2.73 2.73 0.00 4.09
1731 2442 2.124942 CTTTGGAGGCCGAGCTCC 60.125 66.667 8.47 0.00 40.05 4.70
1732 2443 2.927856 TTTGGAGGCCGAGCTCCA 60.928 61.111 8.47 7.35 46.84 3.86
1734 2445 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
1735 2446 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
1736 2447 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
1737 2448 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
1746 2457 3.558674 CTCCATGGAGCTCGGTTTT 57.441 52.632 28.45 0.00 35.31 2.43
1747 2458 1.089920 CTCCATGGAGCTCGGTTTTG 58.910 55.000 28.45 2.18 35.31 2.44
1748 2459 0.690192 TCCATGGAGCTCGGTTTTGA 59.310 50.000 11.44 0.00 0.00 2.69
1749 2460 1.073125 TCCATGGAGCTCGGTTTTGAA 59.927 47.619 11.44 0.00 0.00 2.69
1750 2461 1.885887 CCATGGAGCTCGGTTTTGAAA 59.114 47.619 5.56 0.00 0.00 2.69
1751 2462 2.295909 CCATGGAGCTCGGTTTTGAAAA 59.704 45.455 5.56 0.00 0.00 2.29
1752 2463 3.056607 CCATGGAGCTCGGTTTTGAAAAT 60.057 43.478 5.56 0.00 0.00 1.82
1753 2464 4.559153 CATGGAGCTCGGTTTTGAAAATT 58.441 39.130 7.83 0.00 0.00 1.82
1754 2465 4.664150 TGGAGCTCGGTTTTGAAAATTT 57.336 36.364 7.83 0.00 0.00 1.82
1755 2466 5.017294 TGGAGCTCGGTTTTGAAAATTTT 57.983 34.783 7.83 2.28 0.00 1.82
1756 2467 4.808364 TGGAGCTCGGTTTTGAAAATTTTG 59.192 37.500 8.47 0.00 0.00 2.44
1757 2468 5.047188 GGAGCTCGGTTTTGAAAATTTTGA 58.953 37.500 8.47 0.00 0.00 2.69
1758 2469 5.522097 GGAGCTCGGTTTTGAAAATTTTGAA 59.478 36.000 8.47 3.01 0.00 2.69
1759 2470 6.202762 GGAGCTCGGTTTTGAAAATTTTGAAT 59.797 34.615 8.47 0.00 0.00 2.57
1760 2471 7.383843 GGAGCTCGGTTTTGAAAATTTTGAATA 59.616 33.333 8.47 0.00 0.00 1.75
1761 2472 8.831715 AGCTCGGTTTTGAAAATTTTGAATAT 57.168 26.923 8.47 0.00 0.00 1.28
1762 2473 9.271828 AGCTCGGTTTTGAAAATTTTGAATATT 57.728 25.926 8.47 0.00 0.00 1.28
1763 2474 9.316859 GCTCGGTTTTGAAAATTTTGAATATTG 57.683 29.630 8.47 0.00 0.00 1.90
1828 2539 6.832520 AAAACACACATATACATGAAGGCA 57.167 33.333 0.00 0.00 35.96 4.75
1829 2540 5.818136 AACACACATATACATGAAGGCAC 57.182 39.130 0.00 0.00 35.96 5.01
1830 2541 4.842574 ACACACATATACATGAAGGCACA 58.157 39.130 0.00 0.00 35.96 4.57
1831 2542 5.252547 ACACACATATACATGAAGGCACAA 58.747 37.500 0.00 0.00 35.96 3.33
1832 2543 5.123820 ACACACATATACATGAAGGCACAAC 59.876 40.000 0.00 0.00 35.96 3.32
1833 2544 5.123661 CACACATATACATGAAGGCACAACA 59.876 40.000 0.00 0.00 35.96 3.33
1834 2545 5.123820 ACACATATACATGAAGGCACAACAC 59.876 40.000 0.00 0.00 35.96 3.32
1835 2546 5.123661 CACATATACATGAAGGCACAACACA 59.876 40.000 0.00 0.00 35.96 3.72
1836 2547 5.123820 ACATATACATGAAGGCACAACACAC 59.876 40.000 0.00 0.00 35.96 3.82
1837 2548 1.761449 ACATGAAGGCACAACACACA 58.239 45.000 0.00 0.00 0.00 3.72
1838 2549 2.309613 ACATGAAGGCACAACACACAT 58.690 42.857 0.00 0.00 0.00 3.21
1839 2550 2.034939 ACATGAAGGCACAACACACATG 59.965 45.455 0.00 0.00 39.27 3.21
1840 2551 1.761449 TGAAGGCACAACACACATGT 58.239 45.000 0.00 0.00 42.46 3.21
1841 2552 2.924421 TGAAGGCACAACACACATGTA 58.076 42.857 0.00 0.00 38.45 2.29
1842 2553 3.485394 TGAAGGCACAACACACATGTAT 58.515 40.909 0.00 0.00 38.45 2.29
1843 2554 3.252944 TGAAGGCACAACACACATGTATG 59.747 43.478 1.67 1.67 38.45 2.39
1844 2555 2.862541 AGGCACAACACACATGTATGT 58.137 42.857 3.31 3.31 38.45 2.29
1845 2556 4.014569 AGGCACAACACACATGTATGTA 57.985 40.909 10.76 0.00 38.45 2.29
1846 2557 4.393834 AGGCACAACACACATGTATGTAA 58.606 39.130 10.76 0.00 38.45 2.41
1847 2558 4.824537 AGGCACAACACACATGTATGTAAA 59.175 37.500 10.76 0.00 38.45 2.01
1848 2559 5.476599 AGGCACAACACACATGTATGTAAAT 59.523 36.000 10.76 0.00 38.45 1.40
1849 2560 6.015519 AGGCACAACACACATGTATGTAAATT 60.016 34.615 10.76 0.00 38.45 1.82
1850 2561 6.644592 GGCACAACACACATGTATGTAAATTT 59.355 34.615 10.76 0.00 38.45 1.82
1851 2562 7.170658 GGCACAACACACATGTATGTAAATTTT 59.829 33.333 10.76 0.00 38.45 1.82
1852 2563 8.213812 GCACAACACACATGTATGTAAATTTTC 58.786 33.333 10.76 0.00 38.45 2.29
1853 2564 9.242477 CACAACACACATGTATGTAAATTTTCA 57.758 29.630 10.76 0.00 38.45 2.69
1854 2565 9.462174 ACAACACACATGTATGTAAATTTTCAG 57.538 29.630 10.76 0.00 38.45 3.02
1855 2566 8.914654 CAACACACATGTATGTAAATTTTCAGG 58.085 33.333 10.76 0.00 38.45 3.86
1856 2567 7.601856 ACACACATGTATGTAAATTTTCAGGG 58.398 34.615 8.29 0.00 39.39 4.45
1857 2568 6.531240 CACACATGTATGTAAATTTTCAGGGC 59.469 38.462 0.00 0.00 39.39 5.19
1858 2569 6.210385 ACACATGTATGTAAATTTTCAGGGCA 59.790 34.615 0.00 0.00 39.39 5.36
1859 2570 7.095910 CACATGTATGTAAATTTTCAGGGCAA 58.904 34.615 0.00 0.00 39.39 4.52
1860 2571 7.601886 CACATGTATGTAAATTTTCAGGGCAAA 59.398 33.333 0.00 0.00 39.39 3.68
1861 2572 8.153550 ACATGTATGTAAATTTTCAGGGCAAAA 58.846 29.630 0.00 0.00 39.68 2.44
1862 2573 9.165035 CATGTATGTAAATTTTCAGGGCAAAAT 57.835 29.630 0.00 0.00 37.53 1.82
1867 2578 9.791801 ATGTAAATTTTCAGGGCAAAATAAGTT 57.208 25.926 0.00 0.00 35.35 2.66
1876 2587 9.936759 TTCAGGGCAAAATAAGTTAAAATAAGG 57.063 29.630 0.00 0.00 0.00 2.69
1877 2588 8.536175 TCAGGGCAAAATAAGTTAAAATAAGGG 58.464 33.333 0.00 0.00 0.00 3.95
1878 2589 7.279981 CAGGGCAAAATAAGTTAAAATAAGGGC 59.720 37.037 0.00 0.00 0.00 5.19
1879 2590 7.182026 AGGGCAAAATAAGTTAAAATAAGGGCT 59.818 33.333 0.00 0.00 0.00 5.19
1880 2591 7.279981 GGGCAAAATAAGTTAAAATAAGGGCTG 59.720 37.037 0.00 0.00 0.00 4.85
1881 2592 7.822334 GGCAAAATAAGTTAAAATAAGGGCTGT 59.178 33.333 0.00 0.00 0.00 4.40
1882 2593 8.655970 GCAAAATAAGTTAAAATAAGGGCTGTG 58.344 33.333 0.00 0.00 0.00 3.66
1883 2594 8.655970 CAAAATAAGTTAAAATAAGGGCTGTGC 58.344 33.333 0.00 0.00 0.00 4.57
1884 2595 7.475137 AATAAGTTAAAATAAGGGCTGTGCA 57.525 32.000 0.00 0.00 0.00 4.57
1885 2596 5.799827 AAGTTAAAATAAGGGCTGTGCAA 57.200 34.783 0.00 0.00 0.00 4.08
1886 2597 5.799827 AGTTAAAATAAGGGCTGTGCAAA 57.200 34.783 0.00 0.00 0.00 3.68
1887 2598 6.168270 AGTTAAAATAAGGGCTGTGCAAAA 57.832 33.333 0.00 0.00 0.00 2.44
1888 2599 6.587273 AGTTAAAATAAGGGCTGTGCAAAAA 58.413 32.000 0.00 0.00 0.00 1.94
1912 2623 8.785329 AAAAACAAATCTGAGGCTTTTTAACA 57.215 26.923 0.00 0.00 0.00 2.41
1913 2624 7.770801 AAACAAATCTGAGGCTTTTTAACAC 57.229 32.000 0.00 0.00 0.00 3.32
1914 2625 6.463995 ACAAATCTGAGGCTTTTTAACACA 57.536 33.333 0.00 0.00 0.00 3.72
1915 2626 7.054491 ACAAATCTGAGGCTTTTTAACACAT 57.946 32.000 0.00 0.00 0.00 3.21
1916 2627 6.925165 ACAAATCTGAGGCTTTTTAACACATG 59.075 34.615 0.00 0.00 0.00 3.21
1917 2628 6.899393 AATCTGAGGCTTTTTAACACATGA 57.101 33.333 0.00 0.00 0.00 3.07
1918 2629 7.472334 AATCTGAGGCTTTTTAACACATGAT 57.528 32.000 0.00 0.00 0.00 2.45
1919 2630 8.579850 AATCTGAGGCTTTTTAACACATGATA 57.420 30.769 0.00 0.00 0.00 2.15
1920 2631 7.377766 TCTGAGGCTTTTTAACACATGATAC 57.622 36.000 0.00 0.00 0.00 2.24
1921 2632 7.168219 TCTGAGGCTTTTTAACACATGATACT 58.832 34.615 0.00 0.00 0.00 2.12
1922 2633 8.318412 TCTGAGGCTTTTTAACACATGATACTA 58.682 33.333 0.00 0.00 0.00 1.82
1923 2634 9.113838 CTGAGGCTTTTTAACACATGATACTAT 57.886 33.333 0.00 0.00 0.00 2.12
1924 2635 9.461312 TGAGGCTTTTTAACACATGATACTATT 57.539 29.630 0.00 0.00 0.00 1.73
1925 2636 9.937175 GAGGCTTTTTAACACATGATACTATTC 57.063 33.333 0.00 0.00 0.00 1.75
1926 2637 9.461312 AGGCTTTTTAACACATGATACTATTCA 57.539 29.630 0.00 0.00 0.00 2.57
1935 2646 8.899427 ACACATGATACTATTCATTCTTCCAG 57.101 34.615 0.00 0.00 34.09 3.86
1936 2647 7.935755 ACACATGATACTATTCATTCTTCCAGG 59.064 37.037 0.00 0.00 34.09 4.45
1937 2648 7.935755 CACATGATACTATTCATTCTTCCAGGT 59.064 37.037 0.00 0.00 34.09 4.00
1938 2649 8.153550 ACATGATACTATTCATTCTTCCAGGTC 58.846 37.037 0.00 0.00 34.09 3.85
1939 2650 7.675161 TGATACTATTCATTCTTCCAGGTCA 57.325 36.000 0.00 0.00 0.00 4.02
1940 2651 8.267620 TGATACTATTCATTCTTCCAGGTCAT 57.732 34.615 0.00 0.00 0.00 3.06
1941 2652 8.152898 TGATACTATTCATTCTTCCAGGTCATG 58.847 37.037 0.00 0.00 0.00 3.07
1942 2653 6.566079 ACTATTCATTCTTCCAGGTCATGA 57.434 37.500 0.00 0.00 0.00 3.07
1943 2654 6.962182 ACTATTCATTCTTCCAGGTCATGAA 58.038 36.000 0.00 7.42 38.04 2.57
1944 2655 7.580910 ACTATTCATTCTTCCAGGTCATGAAT 58.419 34.615 16.06 16.06 43.65 2.57
1945 2656 8.057623 ACTATTCATTCTTCCAGGTCATGAATT 58.942 33.333 16.60 0.00 40.20 2.17
1946 2657 7.729124 ATTCATTCTTCCAGGTCATGAATTT 57.271 32.000 0.00 0.00 40.20 1.82
1947 2658 6.519679 TCATTCTTCCAGGTCATGAATTTG 57.480 37.500 0.00 0.00 0.00 2.32
1948 2659 6.012113 TCATTCTTCCAGGTCATGAATTTGT 58.988 36.000 0.00 0.00 0.00 2.83
1949 2660 5.964958 TTCTTCCAGGTCATGAATTTGTC 57.035 39.130 0.00 0.00 0.00 3.18
1950 2661 5.246981 TCTTCCAGGTCATGAATTTGTCT 57.753 39.130 0.00 0.00 0.00 3.41
1951 2662 5.634118 TCTTCCAGGTCATGAATTTGTCTT 58.366 37.500 0.00 0.00 0.00 3.01
1952 2663 6.070656 TCTTCCAGGTCATGAATTTGTCTTT 58.929 36.000 0.00 0.00 0.00 2.52
1953 2664 6.550854 TCTTCCAGGTCATGAATTTGTCTTTT 59.449 34.615 0.00 0.00 0.00 2.27
1954 2665 6.729690 TCCAGGTCATGAATTTGTCTTTTT 57.270 33.333 0.00 0.00 0.00 1.94
1975 2686 4.804608 TTGTACAGGTCACATTTCAACG 57.195 40.909 0.00 0.00 0.00 4.10
1976 2687 3.799366 TGTACAGGTCACATTTCAACGT 58.201 40.909 0.00 0.00 0.00 3.99
1977 2688 4.193090 TGTACAGGTCACATTTCAACGTT 58.807 39.130 0.00 0.00 0.00 3.99
1978 2689 4.636648 TGTACAGGTCACATTTCAACGTTT 59.363 37.500 0.00 0.00 0.00 3.60
1979 2690 4.712122 ACAGGTCACATTTCAACGTTTT 57.288 36.364 0.00 0.00 0.00 2.43
1980 2691 5.066968 ACAGGTCACATTTCAACGTTTTT 57.933 34.783 0.00 0.00 0.00 1.94
1981 2692 5.099575 ACAGGTCACATTTCAACGTTTTTC 58.900 37.500 0.00 0.00 0.00 2.29
1982 2693 5.098893 CAGGTCACATTTCAACGTTTTTCA 58.901 37.500 0.00 0.00 0.00 2.69
1983 2694 5.748152 CAGGTCACATTTCAACGTTTTTCAT 59.252 36.000 0.00 0.00 0.00 2.57
1984 2695 6.255453 CAGGTCACATTTCAACGTTTTTCATT 59.745 34.615 0.00 0.00 0.00 2.57
1985 2696 6.475402 AGGTCACATTTCAACGTTTTTCATTC 59.525 34.615 0.00 0.00 0.00 2.67
1986 2697 6.475402 GGTCACATTTCAACGTTTTTCATTCT 59.525 34.615 0.00 0.00 0.00 2.40
1987 2698 7.329582 GTCACATTTCAACGTTTTTCATTCTG 58.670 34.615 0.00 0.00 0.00 3.02
1988 2699 7.219917 GTCACATTTCAACGTTTTTCATTCTGA 59.780 33.333 0.00 0.00 0.00 3.27
1989 2700 7.757173 TCACATTTCAACGTTTTTCATTCTGAA 59.243 29.630 0.00 0.00 34.03 3.02
1990 2701 8.379161 CACATTTCAACGTTTTTCATTCTGAAA 58.621 29.630 0.00 3.25 43.84 2.69
1991 2702 9.097257 ACATTTCAACGTTTTTCATTCTGAAAT 57.903 25.926 11.37 11.37 44.75 2.17
1992 2703 9.919348 CATTTCAACGTTTTTCATTCTGAAATT 57.081 25.926 13.54 1.71 44.75 1.82
1999 2710 9.360093 ACGTTTTTCATTCTGAAATTTTACACA 57.640 25.926 3.36 0.00 44.75 3.72
2000 2711 9.618410 CGTTTTTCATTCTGAAATTTTACACAC 57.382 29.630 3.36 0.00 44.75 3.82
2021 2732 9.502091 ACACACATAGACATAACATACTTGTTT 57.498 29.630 0.00 0.00 43.57 2.83
2028 2739 8.615878 AGACATAACATACTTGTTTACTTGCA 57.384 30.769 0.00 0.00 43.57 4.08
2029 2740 8.504005 AGACATAACATACTTGTTTACTTGCAC 58.496 33.333 0.00 0.00 43.57 4.57
2030 2741 7.295201 ACATAACATACTTGTTTACTTGCACG 58.705 34.615 0.00 0.00 43.57 5.34
2031 2742 5.744666 AACATACTTGTTTACTTGCACGT 57.255 34.783 0.05 0.05 43.57 4.49
2032 2743 5.744666 ACATACTTGTTTACTTGCACGTT 57.255 34.783 0.00 0.00 29.55 3.99
2033 2744 6.126568 ACATACTTGTTTACTTGCACGTTT 57.873 33.333 0.00 0.00 29.55 3.60
2034 2745 6.557110 ACATACTTGTTTACTTGCACGTTTT 58.443 32.000 0.00 0.00 29.55 2.43
2035 2746 7.030768 ACATACTTGTTTACTTGCACGTTTTT 58.969 30.769 0.00 0.00 29.55 1.94
2074 2785 7.936496 ACCAAAAGGTTTGAATTTGATTTGT 57.064 28.000 2.30 0.00 36.41 2.83
2075 2786 8.347004 ACCAAAAGGTTTGAATTTGATTTGTT 57.653 26.923 2.30 0.00 36.41 2.83
2076 2787 8.801299 ACCAAAAGGTTTGAATTTGATTTGTTT 58.199 25.926 2.30 0.00 36.41 2.83
2077 2788 9.636879 CCAAAAGGTTTGAATTTGATTTGTTTT 57.363 25.926 2.30 0.00 36.41 2.43
2095 2806 8.600449 TTTGTTTTCAAAAATAGGCCTACATG 57.400 30.769 16.61 11.70 45.30 3.21
2096 2807 6.696411 TGTTTTCAAAAATAGGCCTACATGG 58.304 36.000 16.61 4.27 39.35 3.66
2105 2816 2.445845 CCTACATGGCTCCCGGGA 60.446 66.667 25.06 25.06 0.00 5.14
2106 2817 2.511452 CCTACATGGCTCCCGGGAG 61.511 68.421 41.29 41.29 44.56 4.30
2114 2825 4.016706 CTCCCGGGAGCCAAACGT 62.017 66.667 36.90 0.00 35.31 3.99
2115 2826 3.952628 CTCCCGGGAGCCAAACGTC 62.953 68.421 36.90 0.00 35.31 4.34
2119 2830 4.699522 GGGAGCCAAACGTCCGCT 62.700 66.667 3.87 3.87 33.13 5.52
2120 2831 3.119096 GGAGCCAAACGTCCGCTC 61.119 66.667 18.28 18.28 46.67 5.03
2121 2832 2.048127 GAGCCAAACGTCCGCTCT 60.048 61.111 18.90 1.58 44.52 4.09
2122 2833 2.048127 AGCCAAACGTCCGCTCTC 60.048 61.111 0.00 0.00 0.00 3.20
2123 2834 3.479269 GCCAAACGTCCGCTCTCG 61.479 66.667 0.00 0.00 0.00 4.04
2124 2835 2.049433 CCAAACGTCCGCTCTCGT 60.049 61.111 0.00 0.00 42.12 4.18
2126 2837 0.387622 CCAAACGTCCGCTCTCGTTA 60.388 55.000 9.29 0.00 46.95 3.18
2127 2838 0.982673 CAAACGTCCGCTCTCGTTAG 59.017 55.000 9.29 0.00 46.95 2.34
2128 2839 0.595095 AAACGTCCGCTCTCGTTAGT 59.405 50.000 9.29 0.00 46.95 2.24
2129 2840 0.109873 AACGTCCGCTCTCGTTAGTG 60.110 55.000 7.62 0.00 46.05 2.74
2130 2841 1.868251 CGTCCGCTCTCGTTAGTGC 60.868 63.158 0.00 0.00 38.57 4.40
2131 2842 1.507174 GTCCGCTCTCGTTAGTGCT 59.493 57.895 0.00 0.00 39.55 4.40
2132 2843 0.798771 GTCCGCTCTCGTTAGTGCTG 60.799 60.000 0.00 0.00 39.55 4.41
2133 2844 2.161486 CCGCTCTCGTTAGTGCTGC 61.161 63.158 0.00 0.00 39.55 5.25
2134 2845 1.153939 CGCTCTCGTTAGTGCTGCT 60.154 57.895 0.00 0.00 39.55 4.24
2135 2846 0.098905 CGCTCTCGTTAGTGCTGCTA 59.901 55.000 0.00 0.00 39.55 3.49
2136 2847 1.551145 GCTCTCGTTAGTGCTGCTAC 58.449 55.000 0.00 0.00 38.82 3.58
2137 2848 1.133407 GCTCTCGTTAGTGCTGCTACT 59.867 52.381 0.00 5.63 38.82 2.57
2138 2849 2.791567 CTCTCGTTAGTGCTGCTACTG 58.208 52.381 12.80 0.47 32.19 2.74
2139 2850 2.160205 TCTCGTTAGTGCTGCTACTGT 58.840 47.619 12.80 0.00 32.19 3.55
2140 2851 2.161808 TCTCGTTAGTGCTGCTACTGTC 59.838 50.000 12.80 6.67 32.19 3.51
2141 2852 2.160205 TCGTTAGTGCTGCTACTGTCT 58.840 47.619 12.80 1.01 32.19 3.41
2142 2853 3.340928 TCGTTAGTGCTGCTACTGTCTA 58.659 45.455 12.80 0.26 32.19 2.59
2143 2854 3.945921 TCGTTAGTGCTGCTACTGTCTAT 59.054 43.478 12.80 0.00 32.19 1.98
2144 2855 4.035324 TCGTTAGTGCTGCTACTGTCTATC 59.965 45.833 12.80 1.74 32.19 2.08
2145 2856 4.035792 CGTTAGTGCTGCTACTGTCTATCT 59.964 45.833 12.80 0.00 32.19 1.98
2146 2857 5.236695 CGTTAGTGCTGCTACTGTCTATCTA 59.763 44.000 12.80 0.00 32.19 1.98
2147 2858 6.072948 CGTTAGTGCTGCTACTGTCTATCTAT 60.073 42.308 12.80 0.00 32.19 1.98
2148 2859 5.703978 AGTGCTGCTACTGTCTATCTATG 57.296 43.478 0.00 0.00 0.00 2.23
2149 2860 5.380900 AGTGCTGCTACTGTCTATCTATGA 58.619 41.667 0.00 0.00 0.00 2.15
2150 2861 5.830457 AGTGCTGCTACTGTCTATCTATGAA 59.170 40.000 0.00 0.00 0.00 2.57
2151 2862 6.493115 AGTGCTGCTACTGTCTATCTATGAAT 59.507 38.462 0.00 0.00 0.00 2.57
2152 2863 6.806249 GTGCTGCTACTGTCTATCTATGAATC 59.194 42.308 0.00 0.00 0.00 2.52
2153 2864 6.718912 TGCTGCTACTGTCTATCTATGAATCT 59.281 38.462 0.00 0.00 0.00 2.40
2154 2865 7.885399 TGCTGCTACTGTCTATCTATGAATCTA 59.115 37.037 0.00 0.00 0.00 1.98
2155 2866 8.902806 GCTGCTACTGTCTATCTATGAATCTAT 58.097 37.037 0.00 0.00 0.00 1.98
2169 2880 5.509832 TGAATCTATATCCATGCTGCCTT 57.490 39.130 0.00 0.00 0.00 4.35
2178 2889 1.005867 ATGCTGCCTTTGTTTGCCG 60.006 52.632 0.00 0.00 0.00 5.69
2193 2904 0.613260 TGCCGCTGATCCAAACTAGT 59.387 50.000 0.00 0.00 0.00 2.57
2196 2907 3.639561 TGCCGCTGATCCAAACTAGTATA 59.360 43.478 0.00 0.00 0.00 1.47
2197 2908 4.283467 TGCCGCTGATCCAAACTAGTATAT 59.717 41.667 0.00 0.00 0.00 0.86
2198 2909 4.627467 GCCGCTGATCCAAACTAGTATATG 59.373 45.833 0.00 0.00 0.00 1.78
2199 2910 5.784177 CCGCTGATCCAAACTAGTATATGT 58.216 41.667 0.00 0.00 0.00 2.29
2201 2912 6.706270 CCGCTGATCCAAACTAGTATATGTTT 59.294 38.462 0.00 0.00 36.91 2.83
2202 2913 7.226720 CCGCTGATCCAAACTAGTATATGTTTT 59.773 37.037 0.00 0.00 34.60 2.43
2203 2914 8.612619 CGCTGATCCAAACTAGTATATGTTTTT 58.387 33.333 0.00 0.00 34.60 1.94
2333 3117 3.501950 TGCGTCATATATGTCTGATCGC 58.498 45.455 12.42 16.95 39.77 4.58
2334 3118 3.191371 TGCGTCATATATGTCTGATCGCT 59.809 43.478 22.73 0.00 39.90 4.93
2399 3183 0.458543 AGCAGAGTTGTCATACGCGG 60.459 55.000 12.47 0.00 0.00 6.46
2404 3188 2.089936 GTTGTCATACGCGGCGTGA 61.090 57.895 35.53 23.17 41.39 4.35
2407 3191 1.587876 GTCATACGCGGCGTGATCA 60.588 57.895 35.53 18.05 41.39 2.92
2429 3213 9.258826 GATCATCATATATTATGGAGCTCACAC 57.741 37.037 17.19 0.00 0.00 3.82
2457 3241 7.396540 AAATGGCTTGTACTCTTCAAATAGG 57.603 36.000 0.00 0.00 0.00 2.57
2526 3310 0.744414 AAATCCTCGCACCATGACCG 60.744 55.000 0.00 0.00 0.00 4.79
2555 3339 4.162888 TCAAGACTGATGCCACATCTACAT 59.837 41.667 8.87 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 7.092716 CCACCTCTAAAGTTTTCAAATCATGG 58.907 38.462 0.00 0.00 0.00 3.66
43 44 3.244457 ACTTAGTGTTAGAAGGTGGCCAC 60.244 47.826 28.57 28.57 0.00 5.01
44 45 2.976882 ACTTAGTGTTAGAAGGTGGCCA 59.023 45.455 0.00 0.00 0.00 5.36
45 46 3.697619 ACTTAGTGTTAGAAGGTGGCC 57.302 47.619 0.00 0.00 0.00 5.36
46 47 5.402997 ACTACTTAGTGTTAGAAGGTGGC 57.597 43.478 0.00 0.00 34.72 5.01
47 48 6.872547 GGAAACTACTTAGTGTTAGAAGGTGG 59.127 42.308 0.00 0.00 36.50 4.61
48 49 7.439381 TGGAAACTACTTAGTGTTAGAAGGTG 58.561 38.462 0.00 0.00 36.50 4.00
49 50 7.607615 TGGAAACTACTTAGTGTTAGAAGGT 57.392 36.000 0.00 0.00 36.50 3.50
50 51 8.095169 ACATGGAAACTACTTAGTGTTAGAAGG 58.905 37.037 0.00 0.00 36.50 3.46
72 73 8.826710 CAACTGTAGTAAACCATACCATACATG 58.173 37.037 0.00 0.00 0.00 3.21
74 75 7.909518 ACAACTGTAGTAAACCATACCATACA 58.090 34.615 0.00 0.00 0.00 2.29
99 111 7.381139 GCAACTCCTAAAATTTTCAAATCACGA 59.619 33.333 6.72 0.00 0.00 4.35
101 113 7.440856 TGGCAACTCCTAAAATTTTCAAATCAC 59.559 33.333 6.72 0.00 35.26 3.06
148 160 4.070009 TGTCTCTTGTAGAGCTACACGAA 58.930 43.478 14.98 6.61 44.81 3.85
149 161 3.671716 TGTCTCTTGTAGAGCTACACGA 58.328 45.455 9.72 12.08 44.81 4.35
158 170 4.713553 TGTTTTGCCATGTCTCTTGTAGA 58.286 39.130 0.00 0.00 0.00 2.59
286 476 4.825546 CTTGTGAGCAGATGACAACTTT 57.174 40.909 0.00 0.00 0.00 2.66
300 490 2.103042 GCCCTAGCGTGCTTGTGAG 61.103 63.158 0.00 0.00 0.00 3.51
301 491 2.047274 GCCCTAGCGTGCTTGTGA 60.047 61.111 0.00 0.00 0.00 3.58
302 492 1.308069 ATTGCCCTAGCGTGCTTGTG 61.308 55.000 0.00 0.00 44.31 3.33
303 493 0.609131 AATTGCCCTAGCGTGCTTGT 60.609 50.000 0.00 0.00 44.31 3.16
304 494 0.179156 CAATTGCCCTAGCGTGCTTG 60.179 55.000 0.00 0.00 44.31 4.01
305 495 1.937546 GCAATTGCCCTAGCGTGCTT 61.938 55.000 20.06 0.00 44.31 3.91
306 496 2.409870 GCAATTGCCCTAGCGTGCT 61.410 57.895 20.06 0.00 44.31 4.40
307 497 2.102946 GCAATTGCCCTAGCGTGC 59.897 61.111 20.06 0.00 44.31 5.34
317 507 0.179103 GCAGGGTACATGGCAATTGC 60.179 55.000 22.47 22.47 41.14 3.56
318 508 1.184431 TGCAGGGTACATGGCAATTG 58.816 50.000 0.00 0.00 32.54 2.32
319 509 1.935799 TTGCAGGGTACATGGCAATT 58.064 45.000 11.68 0.00 40.94 2.32
320 510 1.935799 TTTGCAGGGTACATGGCAAT 58.064 45.000 15.12 0.00 44.70 3.56
321 511 1.342819 GTTTTGCAGGGTACATGGCAA 59.657 47.619 11.68 11.68 43.79 4.52
322 512 0.965439 GTTTTGCAGGGTACATGGCA 59.035 50.000 0.00 0.00 0.00 4.92
323 513 0.965439 TGTTTTGCAGGGTACATGGC 59.035 50.000 0.00 0.00 0.00 4.40
324 514 1.959985 TGTGTTTTGCAGGGTACATGG 59.040 47.619 0.00 0.00 0.00 3.66
325 515 3.577667 CATGTGTTTTGCAGGGTACATG 58.422 45.455 16.42 16.42 39.30 3.21
326 516 2.562298 CCATGTGTTTTGCAGGGTACAT 59.438 45.455 0.00 3.75 33.58 2.29
327 517 1.959985 CCATGTGTTTTGCAGGGTACA 59.040 47.619 0.00 0.00 33.58 2.90
328 518 1.336795 GCCATGTGTTTTGCAGGGTAC 60.337 52.381 0.00 0.00 39.69 3.34
335 525 1.860326 GTCAGTTGCCATGTGTTTTGC 59.140 47.619 0.00 0.00 0.00 3.68
376 566 7.121759 AGCATTATTGTAAGCAGATGACAACTT 59.878 33.333 0.00 0.00 35.99 2.66
382 572 6.233434 CCCTAGCATTATTGTAAGCAGATGA 58.767 40.000 0.00 0.00 0.00 2.92
452 815 0.626382 TCCGTCTCCTCTCTCCACAT 59.374 55.000 0.00 0.00 0.00 3.21
477 840 3.518003 GCATTTGCCATCTCGCCT 58.482 55.556 0.00 0.00 34.31 5.52
566 930 2.824880 TTTCACCACACGGGAGGGG 61.825 63.158 5.98 0.00 41.15 4.79
567 931 1.599797 GTTTCACCACACGGGAGGG 60.600 63.158 5.98 1.91 41.15 4.30
571 935 0.248296 CGTTTGTTTCACCACACGGG 60.248 55.000 0.00 0.00 44.81 5.28
587 952 2.567497 ATCCGGTCGTCCACACGTT 61.567 57.895 0.00 0.00 46.76 3.99
668 1033 2.896289 CGTGAATCTGCGTTCATATGC 58.104 47.619 0.00 0.00 39.99 3.14
680 1045 2.742372 GCCCACACGCGTGAATCT 60.742 61.111 42.94 20.39 46.80 2.40
742 1107 5.099575 ACTGCTGTAAAACGAACCTTTTTG 58.900 37.500 0.00 0.00 0.00 2.44
743 1108 5.319140 ACTGCTGTAAAACGAACCTTTTT 57.681 34.783 0.00 0.00 0.00 1.94
748 1113 4.053295 TGACTACTGCTGTAAAACGAACC 58.947 43.478 4.91 0.00 0.00 3.62
749 1114 5.646467 TTGACTACTGCTGTAAAACGAAC 57.354 39.130 4.91 0.00 0.00 3.95
750 1115 6.366877 GGTATTGACTACTGCTGTAAAACGAA 59.633 38.462 4.91 0.00 0.00 3.85
751 1116 5.865552 GGTATTGACTACTGCTGTAAAACGA 59.134 40.000 4.91 0.70 0.00 3.85
752 1117 5.220154 CGGTATTGACTACTGCTGTAAAACG 60.220 44.000 4.91 0.00 30.11 3.60
753 1118 5.865552 TCGGTATTGACTACTGCTGTAAAAC 59.134 40.000 4.91 0.88 36.75 2.43
754 1119 6.028146 TCGGTATTGACTACTGCTGTAAAA 57.972 37.500 4.91 1.20 36.75 1.52
755 1120 5.184479 ACTCGGTATTGACTACTGCTGTAAA 59.816 40.000 4.91 0.00 36.75 2.01
756 1121 4.703575 ACTCGGTATTGACTACTGCTGTAA 59.296 41.667 4.91 0.00 36.75 2.41
757 1122 4.095932 CACTCGGTATTGACTACTGCTGTA 59.904 45.833 3.25 3.25 36.75 2.74
758 1123 3.090037 ACTCGGTATTGACTACTGCTGT 58.910 45.455 0.66 0.66 36.75 4.40
759 1124 3.439293 CACTCGGTATTGACTACTGCTG 58.561 50.000 0.00 0.00 36.75 4.41
760 1125 2.427453 CCACTCGGTATTGACTACTGCT 59.573 50.000 0.00 0.00 36.75 4.24
761 1126 2.481449 CCCACTCGGTATTGACTACTGC 60.481 54.545 0.00 0.00 36.75 4.40
762 1127 2.758979 ACCCACTCGGTATTGACTACTG 59.241 50.000 0.00 0.00 45.97 2.74
763 1128 3.097342 ACCCACTCGGTATTGACTACT 57.903 47.619 0.00 0.00 45.97 2.57
786 1151 1.004918 AGAGGCGAAACCCAAGTCG 60.005 57.895 0.00 0.00 40.58 4.18
845 1210 1.173913 GATGTTGGGGCTGTGGTAAC 58.826 55.000 0.00 0.00 0.00 2.50
854 1221 2.440065 TGCGATGGATGTTGGGGC 60.440 61.111 0.00 0.00 0.00 5.80
859 1226 1.019278 GTGGTCGTGCGATGGATGTT 61.019 55.000 0.00 0.00 0.00 2.71
861 1228 1.018752 TTGTGGTCGTGCGATGGATG 61.019 55.000 0.00 0.00 0.00 3.51
878 1245 2.283617 CCTCTTTGCTGACGATCGATTG 59.716 50.000 24.34 11.28 0.00 2.67
879 1246 2.544685 CCTCTTTGCTGACGATCGATT 58.455 47.619 24.34 0.00 0.00 3.34
880 1247 1.202463 CCCTCTTTGCTGACGATCGAT 60.202 52.381 24.34 5.96 0.00 3.59
881 1248 0.173481 CCCTCTTTGCTGACGATCGA 59.827 55.000 24.34 0.00 0.00 3.59
882 1249 0.173481 TCCCTCTTTGCTGACGATCG 59.827 55.000 14.88 14.88 0.00 3.69
883 1250 2.478831 GATCCCTCTTTGCTGACGATC 58.521 52.381 0.00 0.00 0.00 3.69
884 1251 1.139853 GGATCCCTCTTTGCTGACGAT 59.860 52.381 0.00 0.00 0.00 3.73
885 1252 0.537188 GGATCCCTCTTTGCTGACGA 59.463 55.000 0.00 0.00 0.00 4.20
886 1253 0.250234 TGGATCCCTCTTTGCTGACG 59.750 55.000 9.90 0.00 0.00 4.35
887 1254 1.680249 GGTGGATCCCTCTTTGCTGAC 60.680 57.143 9.90 0.00 0.00 3.51
888 1255 0.620556 GGTGGATCCCTCTTTGCTGA 59.379 55.000 9.90 0.00 0.00 4.26
889 1256 0.329261 TGGTGGATCCCTCTTTGCTG 59.671 55.000 9.90 0.00 34.77 4.41
890 1257 0.622665 CTGGTGGATCCCTCTTTGCT 59.377 55.000 9.90 0.00 34.77 3.91
891 1258 0.394899 CCTGGTGGATCCCTCTTTGC 60.395 60.000 9.90 0.00 34.57 3.68
892 1259 0.394899 GCCTGGTGGATCCCTCTTTG 60.395 60.000 9.90 0.00 34.57 2.77
893 1260 1.915078 CGCCTGGTGGATCCCTCTTT 61.915 60.000 9.90 0.00 34.57 2.52
894 1261 2.370445 CGCCTGGTGGATCCCTCTT 61.370 63.158 9.90 0.00 34.57 2.85
895 1262 2.765807 CGCCTGGTGGATCCCTCT 60.766 66.667 9.90 0.00 34.57 3.69
896 1263 4.554036 GCGCCTGGTGGATCCCTC 62.554 72.222 9.90 2.15 34.57 4.30
953 1322 0.958876 GCGAAAAATCACCCTCCCGT 60.959 55.000 0.00 0.00 0.00 5.28
954 1323 0.676782 AGCGAAAAATCACCCTCCCG 60.677 55.000 0.00 0.00 0.00 5.14
983 1352 4.500127 CGACATATGTTTGGTAGTGGTGA 58.500 43.478 10.30 0.00 0.00 4.02
1136 1514 4.537433 GCGCCGCCTTGATCCTCT 62.537 66.667 0.00 0.00 0.00 3.69
1156 1534 2.203938 AGACTCCGGGAAGCCCAA 60.204 61.111 0.00 0.00 45.83 4.12
1221 1599 1.078848 CTCGGGCTTGGACTCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
1321 1699 3.948086 CGCCGAGGATATCGTCGCC 62.948 68.421 32.18 24.72 46.32 5.54
1322 1700 2.502080 CGCCGAGGATATCGTCGC 60.502 66.667 32.18 26.33 46.32 5.19
1413 1825 1.050767 GTTCGTCGTCCTTCGTCTTG 58.949 55.000 0.00 0.00 40.80 3.02
1462 1874 2.959275 CGTAGCCCTTCGTGATCAC 58.041 57.895 16.21 16.21 0.00 3.06
1538 1950 3.529734 AGAAGTCACCTCCTCCTCAGATA 59.470 47.826 0.00 0.00 0.00 1.98
1588 2299 2.805671 CAGAACAACGGCACAACATCTA 59.194 45.455 0.00 0.00 0.00 1.98
1698 2409 3.131396 CCAAAGACCATATCCGCAGTAC 58.869 50.000 0.00 0.00 0.00 2.73
1700 2411 1.837439 TCCAAAGACCATATCCGCAGT 59.163 47.619 0.00 0.00 0.00 4.40
1701 2412 2.487934 CTCCAAAGACCATATCCGCAG 58.512 52.381 0.00 0.00 0.00 5.18
1703 2414 1.884235 CCTCCAAAGACCATATCCGC 58.116 55.000 0.00 0.00 0.00 5.54
1705 2416 1.543429 CGGCCTCCAAAGACCATATCC 60.543 57.143 0.00 0.00 0.00 2.59
1706 2417 1.416401 TCGGCCTCCAAAGACCATATC 59.584 52.381 0.00 0.00 0.00 1.63
1707 2418 1.417890 CTCGGCCTCCAAAGACCATAT 59.582 52.381 0.00 0.00 0.00 1.78
1708 2419 0.830648 CTCGGCCTCCAAAGACCATA 59.169 55.000 0.00 0.00 0.00 2.74
1709 2420 1.604378 CTCGGCCTCCAAAGACCAT 59.396 57.895 0.00 0.00 0.00 3.55
1710 2421 3.068881 CTCGGCCTCCAAAGACCA 58.931 61.111 0.00 0.00 0.00 4.02
1711 2422 2.436824 GCTCGGCCTCCAAAGACC 60.437 66.667 0.00 0.00 0.00 3.85
1712 2423 1.448717 GAGCTCGGCCTCCAAAGAC 60.449 63.158 0.00 0.00 0.00 3.01
1713 2424 2.982130 GAGCTCGGCCTCCAAAGA 59.018 61.111 0.00 0.00 0.00 2.52
1719 2430 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
1720 2431 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
1728 2439 1.089920 CAAAACCGAGCTCCATGGAG 58.910 55.000 33.73 33.73 44.56 3.86
1729 2440 0.690192 TCAAAACCGAGCTCCATGGA 59.310 50.000 15.27 15.27 0.00 3.41
1730 2441 1.533625 TTCAAAACCGAGCTCCATGG 58.466 50.000 4.97 4.97 0.00 3.66
1731 2442 3.641437 TTTTCAAAACCGAGCTCCATG 57.359 42.857 8.47 0.00 0.00 3.66
1732 2443 4.871933 AATTTTCAAAACCGAGCTCCAT 57.128 36.364 8.47 0.00 0.00 3.41
1733 2444 4.664150 AAATTTTCAAAACCGAGCTCCA 57.336 36.364 8.47 0.00 0.00 3.86
1734 2445 5.047188 TCAAAATTTTCAAAACCGAGCTCC 58.953 37.500 8.47 0.00 0.00 4.70
1735 2446 6.582437 TTCAAAATTTTCAAAACCGAGCTC 57.418 33.333 2.73 2.73 0.00 4.09
1736 2447 8.831715 ATATTCAAAATTTTCAAAACCGAGCT 57.168 26.923 0.00 0.00 0.00 4.09
1737 2448 9.316859 CAATATTCAAAATTTTCAAAACCGAGC 57.683 29.630 0.00 0.00 0.00 5.03
1804 2515 7.090173 GTGCCTTCATGTATATGTGTGTTTTT 58.910 34.615 0.00 0.00 35.73 1.94
1805 2516 6.208402 TGTGCCTTCATGTATATGTGTGTTTT 59.792 34.615 0.00 0.00 35.73 2.43
1806 2517 5.709631 TGTGCCTTCATGTATATGTGTGTTT 59.290 36.000 0.00 0.00 35.73 2.83
1807 2518 5.252547 TGTGCCTTCATGTATATGTGTGTT 58.747 37.500 0.00 0.00 35.73 3.32
1808 2519 4.842574 TGTGCCTTCATGTATATGTGTGT 58.157 39.130 0.00 0.00 35.73 3.72
1809 2520 5.123661 TGTTGTGCCTTCATGTATATGTGTG 59.876 40.000 0.00 0.00 35.73 3.82
1810 2521 5.123820 GTGTTGTGCCTTCATGTATATGTGT 59.876 40.000 0.00 0.00 35.73 3.72
1811 2522 5.123661 TGTGTTGTGCCTTCATGTATATGTG 59.876 40.000 0.00 0.00 35.73 3.21
1812 2523 5.123820 GTGTGTTGTGCCTTCATGTATATGT 59.876 40.000 0.00 0.00 35.73 2.29
1813 2524 5.123661 TGTGTGTTGTGCCTTCATGTATATG 59.876 40.000 0.00 0.00 35.57 1.78
1814 2525 5.252547 TGTGTGTTGTGCCTTCATGTATAT 58.747 37.500 0.00 0.00 0.00 0.86
1815 2526 4.646572 TGTGTGTTGTGCCTTCATGTATA 58.353 39.130 0.00 0.00 0.00 1.47
1816 2527 3.485394 TGTGTGTTGTGCCTTCATGTAT 58.515 40.909 0.00 0.00 0.00 2.29
1817 2528 2.924421 TGTGTGTTGTGCCTTCATGTA 58.076 42.857 0.00 0.00 0.00 2.29
1818 2529 1.761449 TGTGTGTTGTGCCTTCATGT 58.239 45.000 0.00 0.00 0.00 3.21
1819 2530 2.034939 ACATGTGTGTTGTGCCTTCATG 59.965 45.455 0.00 0.00 34.01 3.07
1820 2531 2.309613 ACATGTGTGTTGTGCCTTCAT 58.690 42.857 0.00 0.00 34.01 2.57
1821 2532 1.761449 ACATGTGTGTTGTGCCTTCA 58.239 45.000 0.00 0.00 34.01 3.02
1822 2533 3.253188 ACATACATGTGTGTTGTGCCTTC 59.747 43.478 21.17 0.00 40.03 3.46
1823 2534 3.221771 ACATACATGTGTGTTGTGCCTT 58.778 40.909 21.17 0.00 40.03 4.35
1824 2535 2.862541 ACATACATGTGTGTTGTGCCT 58.137 42.857 21.17 0.00 40.03 4.75
1825 2536 4.757799 TTACATACATGTGTGTTGTGCC 57.242 40.909 29.70 0.00 41.89 5.01
1826 2537 7.636259 AAATTTACATACATGTGTGTTGTGC 57.364 32.000 29.70 0.00 41.89 4.57
1827 2538 9.242477 TGAAAATTTACATACATGTGTGTTGTG 57.758 29.630 29.70 11.37 41.89 3.33
1828 2539 9.462174 CTGAAAATTTACATACATGTGTGTTGT 57.538 29.630 29.70 18.51 41.89 3.32
1829 2540 8.914654 CCTGAAAATTTACATACATGTGTGTTG 58.085 33.333 29.70 14.23 41.89 3.33
1830 2541 8.087750 CCCTGAAAATTTACATACATGTGTGTT 58.912 33.333 29.70 13.45 41.89 3.32
1831 2542 7.601856 CCCTGAAAATTTACATACATGTGTGT 58.398 34.615 28.01 28.01 41.89 3.72
1832 2543 6.531240 GCCCTGAAAATTTACATACATGTGTG 59.469 38.462 19.81 19.81 41.89 3.82
1833 2544 6.210385 TGCCCTGAAAATTTACATACATGTGT 59.790 34.615 9.11 0.00 41.89 3.72
1834 2545 6.629128 TGCCCTGAAAATTTACATACATGTG 58.371 36.000 9.11 0.00 41.89 3.21
1835 2546 6.849085 TGCCCTGAAAATTTACATACATGT 57.151 33.333 2.69 2.69 44.48 3.21
1836 2547 8.545229 TTTTGCCCTGAAAATTTACATACATG 57.455 30.769 0.00 0.00 0.00 3.21
1841 2552 9.791801 AACTTATTTTGCCCTGAAAATTTACAT 57.208 25.926 0.00 0.00 36.94 2.29
1850 2561 9.936759 CCTTATTTTAACTTATTTTGCCCTGAA 57.063 29.630 0.00 0.00 0.00 3.02
1851 2562 8.536175 CCCTTATTTTAACTTATTTTGCCCTGA 58.464 33.333 0.00 0.00 0.00 3.86
1852 2563 7.279981 GCCCTTATTTTAACTTATTTTGCCCTG 59.720 37.037 0.00 0.00 0.00 4.45
1853 2564 7.182026 AGCCCTTATTTTAACTTATTTTGCCCT 59.818 33.333 0.00 0.00 0.00 5.19
1854 2565 7.279981 CAGCCCTTATTTTAACTTATTTTGCCC 59.720 37.037 0.00 0.00 0.00 5.36
1855 2566 7.822334 ACAGCCCTTATTTTAACTTATTTTGCC 59.178 33.333 0.00 0.00 0.00 4.52
1856 2567 8.655970 CACAGCCCTTATTTTAACTTATTTTGC 58.344 33.333 0.00 0.00 0.00 3.68
1857 2568 8.655970 GCACAGCCCTTATTTTAACTTATTTTG 58.344 33.333 0.00 0.00 0.00 2.44
1858 2569 8.371699 TGCACAGCCCTTATTTTAACTTATTTT 58.628 29.630 0.00 0.00 0.00 1.82
1859 2570 7.902087 TGCACAGCCCTTATTTTAACTTATTT 58.098 30.769 0.00 0.00 0.00 1.40
1860 2571 7.475137 TGCACAGCCCTTATTTTAACTTATT 57.525 32.000 0.00 0.00 0.00 1.40
1861 2572 7.475137 TTGCACAGCCCTTATTTTAACTTAT 57.525 32.000 0.00 0.00 0.00 1.73
1862 2573 6.902771 TTGCACAGCCCTTATTTTAACTTA 57.097 33.333 0.00 0.00 0.00 2.24
1863 2574 5.799827 TTGCACAGCCCTTATTTTAACTT 57.200 34.783 0.00 0.00 0.00 2.66
1864 2575 5.799827 TTTGCACAGCCCTTATTTTAACT 57.200 34.783 0.00 0.00 0.00 2.24
1865 2576 6.852858 TTTTTGCACAGCCCTTATTTTAAC 57.147 33.333 0.00 0.00 0.00 2.01
1887 2598 8.664798 GTGTTAAAAAGCCTCAGATTTGTTTTT 58.335 29.630 0.00 0.00 30.45 1.94
1888 2599 7.821846 TGTGTTAAAAAGCCTCAGATTTGTTTT 59.178 29.630 0.00 0.00 30.45 2.43
1889 2600 7.327214 TGTGTTAAAAAGCCTCAGATTTGTTT 58.673 30.769 0.00 0.00 30.45 2.83
1890 2601 6.872920 TGTGTTAAAAAGCCTCAGATTTGTT 58.127 32.000 0.00 0.00 30.45 2.83
1891 2602 6.463995 TGTGTTAAAAAGCCTCAGATTTGT 57.536 33.333 0.00 0.00 30.45 2.83
1892 2603 7.147312 TCATGTGTTAAAAAGCCTCAGATTTG 58.853 34.615 0.00 0.00 30.45 2.32
1893 2604 7.288810 TCATGTGTTAAAAAGCCTCAGATTT 57.711 32.000 0.00 0.00 31.52 2.17
1894 2605 6.899393 TCATGTGTTAAAAAGCCTCAGATT 57.101 33.333 0.00 0.00 0.00 2.40
1895 2606 7.831193 AGTATCATGTGTTAAAAAGCCTCAGAT 59.169 33.333 0.00 0.00 0.00 2.90
1896 2607 7.168219 AGTATCATGTGTTAAAAAGCCTCAGA 58.832 34.615 0.00 0.00 0.00 3.27
1897 2608 7.383102 AGTATCATGTGTTAAAAAGCCTCAG 57.617 36.000 0.00 0.00 0.00 3.35
1898 2609 9.461312 AATAGTATCATGTGTTAAAAAGCCTCA 57.539 29.630 0.00 0.00 0.00 3.86
1899 2610 9.937175 GAATAGTATCATGTGTTAAAAAGCCTC 57.063 33.333 0.00 0.00 0.00 4.70
1900 2611 9.461312 TGAATAGTATCATGTGTTAAAAAGCCT 57.539 29.630 0.00 0.00 0.00 4.58
1909 2620 9.334947 CTGGAAGAATGAATAGTATCATGTGTT 57.665 33.333 0.00 0.00 39.90 3.32
1910 2621 7.935755 CCTGGAAGAATGAATAGTATCATGTGT 59.064 37.037 0.00 0.00 39.90 3.72
1911 2622 7.935755 ACCTGGAAGAATGAATAGTATCATGTG 59.064 37.037 0.00 0.00 39.90 3.21
1912 2623 8.038862 ACCTGGAAGAATGAATAGTATCATGT 57.961 34.615 0.00 0.00 39.90 3.21
1913 2624 8.152898 TGACCTGGAAGAATGAATAGTATCATG 58.847 37.037 0.00 0.00 39.90 3.07
1914 2625 8.267620 TGACCTGGAAGAATGAATAGTATCAT 57.732 34.615 0.00 0.00 41.74 2.45
1915 2626 7.675161 TGACCTGGAAGAATGAATAGTATCA 57.325 36.000 0.00 0.00 34.07 2.15
1916 2627 8.370940 TCATGACCTGGAAGAATGAATAGTATC 58.629 37.037 0.00 0.00 34.07 2.24
1917 2628 8.267620 TCATGACCTGGAAGAATGAATAGTAT 57.732 34.615 0.00 0.00 34.07 2.12
1918 2629 7.675161 TCATGACCTGGAAGAATGAATAGTA 57.325 36.000 0.00 0.00 34.07 1.82
1919 2630 6.566079 TCATGACCTGGAAGAATGAATAGT 57.434 37.500 0.00 0.00 34.07 2.12
1920 2631 8.461249 AATTCATGACCTGGAAGAATGAATAG 57.539 34.615 20.28 0.00 42.53 1.73
1921 2632 8.689061 CAAATTCATGACCTGGAAGAATGAATA 58.311 33.333 20.28 5.87 42.53 1.75
1922 2633 7.179694 ACAAATTCATGACCTGGAAGAATGAAT 59.820 33.333 17.13 17.13 43.83 2.57
1923 2634 6.494491 ACAAATTCATGACCTGGAAGAATGAA 59.506 34.615 0.00 10.10 40.09 2.57
1924 2635 6.012113 ACAAATTCATGACCTGGAAGAATGA 58.988 36.000 0.00 1.12 34.07 2.57
1925 2636 6.152323 AGACAAATTCATGACCTGGAAGAATG 59.848 38.462 0.00 0.00 34.07 2.67
1926 2637 6.251471 AGACAAATTCATGACCTGGAAGAAT 58.749 36.000 0.00 1.49 34.07 2.40
1927 2638 5.634118 AGACAAATTCATGACCTGGAAGAA 58.366 37.500 0.00 0.00 34.07 2.52
1928 2639 5.246981 AGACAAATTCATGACCTGGAAGA 57.753 39.130 0.00 0.00 34.07 2.87
1929 2640 5.972107 AAGACAAATTCATGACCTGGAAG 57.028 39.130 0.00 0.00 0.00 3.46
1930 2641 6.729690 AAAAGACAAATTCATGACCTGGAA 57.270 33.333 0.00 0.00 0.00 3.53
1931 2642 6.729690 AAAAAGACAAATTCATGACCTGGA 57.270 33.333 0.00 0.00 0.00 3.86
1951 2662 6.030849 CGTTGAAATGTGACCTGTACAAAAA 58.969 36.000 0.00 0.00 0.00 1.94
1952 2663 5.124138 ACGTTGAAATGTGACCTGTACAAAA 59.876 36.000 0.00 0.00 0.00 2.44
1953 2664 4.636648 ACGTTGAAATGTGACCTGTACAAA 59.363 37.500 0.00 0.00 0.00 2.83
1954 2665 4.193090 ACGTTGAAATGTGACCTGTACAA 58.807 39.130 0.00 0.00 0.00 2.41
1955 2666 3.799366 ACGTTGAAATGTGACCTGTACA 58.201 40.909 0.00 0.00 0.00 2.90
1956 2667 4.806342 AACGTTGAAATGTGACCTGTAC 57.194 40.909 0.00 0.00 0.00 2.90
1957 2668 5.821516 AAAACGTTGAAATGTGACCTGTA 57.178 34.783 0.00 0.00 0.00 2.74
1958 2669 4.712122 AAAACGTTGAAATGTGACCTGT 57.288 36.364 0.00 0.00 0.00 4.00
1959 2670 5.098893 TGAAAAACGTTGAAATGTGACCTG 58.901 37.500 0.00 0.00 0.00 4.00
1960 2671 5.317733 TGAAAAACGTTGAAATGTGACCT 57.682 34.783 0.00 0.00 0.00 3.85
1961 2672 6.475402 AGAATGAAAAACGTTGAAATGTGACC 59.525 34.615 0.00 0.00 0.00 4.02
1962 2673 7.219917 TCAGAATGAAAAACGTTGAAATGTGAC 59.780 33.333 0.00 0.00 45.97 3.67
1963 2674 7.254137 TCAGAATGAAAAACGTTGAAATGTGA 58.746 30.769 0.00 0.00 45.97 3.58
1964 2675 7.448588 TCAGAATGAAAAACGTTGAAATGTG 57.551 32.000 0.00 0.00 45.97 3.21
2010 2721 5.744666 AACGTGCAAGTAAACAAGTATGT 57.255 34.783 5.50 0.00 43.14 2.29
2011 2722 7.444558 AAAAACGTGCAAGTAAACAAGTATG 57.555 32.000 5.50 0.00 0.00 2.39
2063 2774 9.964303 GGCCTATTTTTGAAAACAAATCAAATT 57.036 25.926 0.00 0.00 43.94 1.82
2064 2775 9.353431 AGGCCTATTTTTGAAAACAAATCAAAT 57.647 25.926 1.29 0.00 43.94 2.32
2065 2776 8.744568 AGGCCTATTTTTGAAAACAAATCAAA 57.255 26.923 1.29 0.00 43.12 2.69
2066 2777 9.267084 GTAGGCCTATTTTTGAAAACAAATCAA 57.733 29.630 17.38 0.00 35.11 2.57
2067 2778 8.424918 TGTAGGCCTATTTTTGAAAACAAATCA 58.575 29.630 17.38 0.00 0.00 2.57
2068 2779 8.825667 TGTAGGCCTATTTTTGAAAACAAATC 57.174 30.769 17.38 0.00 0.00 2.17
2069 2780 9.218440 CATGTAGGCCTATTTTTGAAAACAAAT 57.782 29.630 17.38 0.00 0.00 2.32
2070 2781 7.659390 CCATGTAGGCCTATTTTTGAAAACAAA 59.341 33.333 17.38 0.00 0.00 2.83
2071 2782 7.158021 CCATGTAGGCCTATTTTTGAAAACAA 58.842 34.615 17.38 0.00 0.00 2.83
2072 2783 6.696411 CCATGTAGGCCTATTTTTGAAAACA 58.304 36.000 17.38 8.01 0.00 2.83
2088 2799 2.445845 TCCCGGGAGCCATGTAGG 60.446 66.667 22.63 0.00 41.84 3.18
2089 2800 3.142393 CTCCCGGGAGCCATGTAG 58.858 66.667 36.90 12.91 35.31 2.74
2097 2808 3.952628 GACGTTTGGCTCCCGGGAG 62.953 68.421 41.29 41.29 44.56 4.30
2098 2809 4.011517 GACGTTTGGCTCCCGGGA 62.012 66.667 25.06 25.06 0.00 5.14
2102 2813 4.699522 AGCGGACGTTTGGCTCCC 62.700 66.667 3.48 0.00 29.31 4.30
2103 2814 3.119096 GAGCGGACGTTTGGCTCC 61.119 66.667 19.59 2.41 45.67 4.70
2105 2816 2.048127 GAGAGCGGACGTTTGGCT 60.048 61.111 8.42 8.42 40.29 4.75
2106 2817 3.479269 CGAGAGCGGACGTTTGGC 61.479 66.667 0.00 0.00 0.00 4.52
2107 2818 2.049433 ACGAGAGCGGACGTTTGG 60.049 61.111 0.00 0.00 43.17 3.28
2111 2822 1.500844 CACTAACGAGAGCGGACGT 59.499 57.895 0.00 0.00 44.57 4.34
2112 2823 1.868251 GCACTAACGAGAGCGGACG 60.868 63.158 0.00 0.00 43.17 4.79
2113 2824 0.798771 CAGCACTAACGAGAGCGGAC 60.799 60.000 0.00 0.00 43.40 4.79
2114 2825 1.506718 CAGCACTAACGAGAGCGGA 59.493 57.895 0.00 0.00 43.40 5.54
2115 2826 2.161486 GCAGCACTAACGAGAGCGG 61.161 63.158 0.00 0.00 43.40 5.52
2116 2827 0.098905 TAGCAGCACTAACGAGAGCG 59.901 55.000 0.00 0.00 43.40 5.03
2117 2828 1.133407 AGTAGCAGCACTAACGAGAGC 59.867 52.381 0.00 0.00 39.38 4.09
2118 2829 2.162608 ACAGTAGCAGCACTAACGAGAG 59.837 50.000 0.00 0.00 30.90 3.20
2119 2830 2.160205 ACAGTAGCAGCACTAACGAGA 58.840 47.619 0.00 0.00 30.90 4.04
2120 2831 2.162608 AGACAGTAGCAGCACTAACGAG 59.837 50.000 0.00 0.00 30.90 4.18
2121 2832 2.160205 AGACAGTAGCAGCACTAACGA 58.840 47.619 0.00 0.00 30.90 3.85
2122 2833 2.638556 AGACAGTAGCAGCACTAACG 57.361 50.000 0.00 0.00 30.90 3.18
2123 2834 5.508200 AGATAGACAGTAGCAGCACTAAC 57.492 43.478 0.00 0.00 30.90 2.34
2124 2835 6.998673 TCATAGATAGACAGTAGCAGCACTAA 59.001 38.462 0.00 0.00 30.90 2.24
2125 2836 6.534634 TCATAGATAGACAGTAGCAGCACTA 58.465 40.000 0.00 0.00 0.00 2.74
2126 2837 5.380900 TCATAGATAGACAGTAGCAGCACT 58.619 41.667 0.00 0.00 0.00 4.40
2127 2838 5.697473 TCATAGATAGACAGTAGCAGCAC 57.303 43.478 0.00 0.00 0.00 4.40
2128 2839 6.718912 AGATTCATAGATAGACAGTAGCAGCA 59.281 38.462 0.00 0.00 0.00 4.41
2129 2840 7.156876 AGATTCATAGATAGACAGTAGCAGC 57.843 40.000 0.00 0.00 0.00 5.25
2140 2851 9.642327 GCAGCATGGATATAGATTCATAGATAG 57.358 37.037 0.00 0.00 35.86 2.08
2141 2852 8.591940 GGCAGCATGGATATAGATTCATAGATA 58.408 37.037 0.00 0.00 35.86 1.98
2142 2853 7.292827 AGGCAGCATGGATATAGATTCATAGAT 59.707 37.037 0.00 0.00 35.86 1.98
2143 2854 6.614496 AGGCAGCATGGATATAGATTCATAGA 59.386 38.462 0.00 0.00 35.86 1.98
2144 2855 6.828788 AGGCAGCATGGATATAGATTCATAG 58.171 40.000 0.00 0.00 35.86 2.23
2145 2856 6.819947 AGGCAGCATGGATATAGATTCATA 57.180 37.500 0.00 0.00 35.86 2.15
2146 2857 5.712084 AGGCAGCATGGATATAGATTCAT 57.288 39.130 0.00 0.00 35.86 2.57
2147 2858 5.509832 AAGGCAGCATGGATATAGATTCA 57.490 39.130 0.00 0.00 35.86 2.57
2148 2859 5.709164 ACAAAGGCAGCATGGATATAGATTC 59.291 40.000 0.00 0.00 35.86 2.52
2149 2860 5.638133 ACAAAGGCAGCATGGATATAGATT 58.362 37.500 0.00 0.00 35.86 2.40
2150 2861 5.252586 ACAAAGGCAGCATGGATATAGAT 57.747 39.130 0.00 0.00 35.86 1.98
2151 2862 4.712051 ACAAAGGCAGCATGGATATAGA 57.288 40.909 0.00 0.00 35.86 1.98
2152 2863 5.526115 CAAACAAAGGCAGCATGGATATAG 58.474 41.667 0.00 0.00 35.86 1.31
2153 2864 4.202141 GCAAACAAAGGCAGCATGGATATA 60.202 41.667 0.00 0.00 35.86 0.86
2154 2865 3.431207 GCAAACAAAGGCAGCATGGATAT 60.431 43.478 0.00 0.00 35.86 1.63
2155 2866 2.094078 GCAAACAAAGGCAGCATGGATA 60.094 45.455 0.00 0.00 35.86 2.59
2156 2867 1.338389 GCAAACAAAGGCAGCATGGAT 60.338 47.619 0.00 0.00 35.86 3.41
2157 2868 0.033781 GCAAACAAAGGCAGCATGGA 59.966 50.000 0.00 0.00 35.86 3.41
2158 2869 0.952010 GGCAAACAAAGGCAGCATGG 60.952 55.000 0.00 0.00 35.86 3.66
2159 2870 1.286354 CGGCAAACAAAGGCAGCATG 61.286 55.000 0.00 0.00 40.87 4.06
2163 2874 1.662446 CAGCGGCAAACAAAGGCAG 60.662 57.895 1.45 0.00 0.00 4.85
2169 2880 1.035923 TTTGGATCAGCGGCAAACAA 58.964 45.000 1.45 0.00 0.00 2.83
2205 2916 9.511144 CCTTTGAAGTAACAACGAATAAAAAGT 57.489 29.630 0.00 0.00 0.00 2.66
2230 3007 7.597369 ACGAATTAAGCTTAAACAAATGGTTCC 59.403 33.333 22.13 4.41 39.29 3.62
2359 3143 5.056480 GCTAAAGTGCCTTTCCATGTTTTT 58.944 37.500 3.80 0.00 35.21 1.94
2378 3162 2.526077 CGCGTATGACAACTCTGCTAA 58.474 47.619 0.00 0.00 0.00 3.09
2399 3183 6.927936 AGCTCCATAATATATGATGATCACGC 59.072 38.462 11.24 6.35 0.00 5.34
2404 3188 8.209584 GGTGTGAGCTCCATAATATATGATGAT 58.790 37.037 12.15 0.00 0.00 2.45
2407 3191 7.500629 TGGTGTGAGCTCCATAATATATGAT 57.499 36.000 12.15 0.00 33.76 2.45
2429 3213 5.452078 TGAAGAGTACAAGCCATTTTTGG 57.548 39.130 0.00 0.00 0.00 3.28
2457 3241 2.229784 CTCCAAATGAAGCCTCCACAAC 59.770 50.000 0.00 0.00 0.00 3.32
2500 3284 3.342377 TGGTGCGAGGATTTTCATGTA 57.658 42.857 0.00 0.00 0.00 2.29
2526 3310 1.003580 TGGCATCAGTCTTGAAGACCC 59.996 52.381 20.81 14.69 46.18 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.