Multiple sequence alignment - TraesCS7B01G104200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G104200 chr7B 100.000 3065 0 0 1 3065 119699496 119702560 0.000000e+00 5661
1 TraesCS7B01G104200 chr7B 82.258 620 67 22 2466 3063 333348060 333348658 2.120000e-136 496
2 TraesCS7B01G104200 chr7D 89.595 3162 164 60 1 3065 159061691 159064784 0.000000e+00 3864
3 TraesCS7B01G104200 chr7D 83.441 622 61 21 2466 3065 188949558 188950159 9.670000e-150 540
4 TraesCS7B01G104200 chr7A 88.561 2203 128 49 1 2145 159559401 159557265 0.000000e+00 2558
5 TraesCS7B01G104200 chr7A 88.152 920 55 26 2165 3065 159557273 159556389 0.000000e+00 1046
6 TraesCS7B01G104200 chr7A 82.924 855 83 22 85 917 159577113 159576300 0.000000e+00 712
7 TraesCS7B01G104200 chr7A 84.753 669 73 16 1 647 159578091 159577430 0.000000e+00 643
8 TraesCS7B01G104200 chr7A 93.182 88 5 1 85 171 159577209 159577122 8.920000e-26 128
9 TraesCS7B01G104200 chr6A 87.238 956 106 13 1063 2004 548110767 548111720 0.000000e+00 1075
10 TraesCS7B01G104200 chr6D 86.911 955 111 11 1063 2004 401737118 401738071 0.000000e+00 1059
11 TraesCS7B01G104200 chr6B 86.335 966 115 13 1052 2004 602504233 602505194 0.000000e+00 1037
12 TraesCS7B01G104200 chr6B 82.432 296 40 8 1152 1435 85848900 85849195 6.560000e-62 248
13 TraesCS7B01G104200 chr4D 84.874 833 110 8 1152 1971 399420200 399419371 0.000000e+00 826
14 TraesCS7B01G104200 chr1B 82.767 824 113 18 1150 1958 668249328 668250137 0.000000e+00 708
15 TraesCS7B01G104200 chr2D 78.323 632 119 18 1376 1998 473087661 473087039 2.860000e-105 392
16 TraesCS7B01G104200 chr2A 77.813 631 124 16 1376 1998 614522994 614522372 2.890000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G104200 chr7B 119699496 119702560 3064 False 5661.000000 5661 100.0000 1 3065 1 chr7B.!!$F1 3064
1 TraesCS7B01G104200 chr7B 333348060 333348658 598 False 496.000000 496 82.2580 2466 3063 1 chr7B.!!$F2 597
2 TraesCS7B01G104200 chr7D 159061691 159064784 3093 False 3864.000000 3864 89.5950 1 3065 1 chr7D.!!$F1 3064
3 TraesCS7B01G104200 chr7D 188949558 188950159 601 False 540.000000 540 83.4410 2466 3065 1 chr7D.!!$F2 599
4 TraesCS7B01G104200 chr7A 159556389 159559401 3012 True 1802.000000 2558 88.3565 1 3065 2 chr7A.!!$R1 3064
5 TraesCS7B01G104200 chr7A 159576300 159578091 1791 True 494.333333 712 86.9530 1 917 3 chr7A.!!$R2 916
6 TraesCS7B01G104200 chr6A 548110767 548111720 953 False 1075.000000 1075 87.2380 1063 2004 1 chr6A.!!$F1 941
7 TraesCS7B01G104200 chr6D 401737118 401738071 953 False 1059.000000 1059 86.9110 1063 2004 1 chr6D.!!$F1 941
8 TraesCS7B01G104200 chr6B 602504233 602505194 961 False 1037.000000 1037 86.3350 1052 2004 1 chr6B.!!$F2 952
9 TraesCS7B01G104200 chr4D 399419371 399420200 829 True 826.000000 826 84.8740 1152 1971 1 chr4D.!!$R1 819
10 TraesCS7B01G104200 chr1B 668249328 668250137 809 False 708.000000 708 82.7670 1150 1958 1 chr1B.!!$F1 808
11 TraesCS7B01G104200 chr2D 473087039 473087661 622 True 392.000000 392 78.3230 1376 1998 1 chr2D.!!$R1 622
12 TraesCS7B01G104200 chr2A 614522372 614522994 622 True 375.000000 375 77.8130 1376 1998 1 chr2A.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1934 0.097674 CGCCGCAAGAATCCAAGAAG 59.902 55.0 0.0 0.0 43.02 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2643 3670 0.322816 TGCTGGCCCTGTTCTGAATC 60.323 55.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.039852 ACCAGAGAAAGAACCTCTCAGTTC 59.960 45.833 2.92 0.00 45.34 3.01
97 98 2.788786 CCAACAAAATGTCAACGTGAGC 59.211 45.455 0.00 0.00 0.00 4.26
105 106 7.437862 ACAAAATGTCAACGTGAGCAATAAAAT 59.562 29.630 0.00 0.00 0.00 1.82
248 251 3.129871 CAAACAAATCAAACATGGCCGT 58.870 40.909 0.00 0.00 0.00 5.68
259 262 0.659427 CATGGCCGTCATTGCTACAG 59.341 55.000 0.00 0.00 32.92 2.74
326 329 5.841957 AAAACATCTCAACATATCCCAGC 57.158 39.130 0.00 0.00 0.00 4.85
345 348 5.489249 CCAGCTATATGAAGCACATCATCT 58.511 41.667 3.32 0.00 45.30 2.90
352 355 9.964303 CTATATGAAGCACATCATCTAGATACC 57.036 37.037 4.54 0.00 38.11 2.73
361 364 7.392418 CACATCATCTAGATACCCATGTGAAT 58.608 38.462 25.09 5.69 41.34 2.57
365 368 8.899887 TCATCTAGATACCCATGTGAATATCA 57.100 34.615 4.54 0.00 0.00 2.15
464 486 9.220767 GACTTTATAGACCAGACAGAACAAAAT 57.779 33.333 0.00 0.00 0.00 1.82
468 490 9.871238 TTATAGACCAGACAGAACAAAATAGAC 57.129 33.333 0.00 0.00 0.00 2.59
476 498 9.979270 CAGACAGAACAAAATAGACATATCAAC 57.021 33.333 0.00 0.00 0.00 3.18
548 572 5.614308 TGCCAAGAGATATACAACATGAGG 58.386 41.667 0.00 0.00 0.00 3.86
555 579 9.911788 AAGAGATATACAACATGAGGTCAAAAT 57.088 29.630 0.00 0.00 0.00 1.82
619 1531 2.346766 TGACAAACCTCAGTGCATGT 57.653 45.000 0.00 0.00 0.00 3.21
628 1540 7.230510 ACAAACCTCAGTGCATGTTTTTCTATA 59.769 33.333 0.00 0.00 0.00 1.31
713 1642 0.781787 GCGTGGCCGAATTGAAAAAC 59.218 50.000 0.00 0.00 35.63 2.43
717 1646 3.712187 GTGGCCGAATTGAAAAACAGAA 58.288 40.909 0.00 0.00 0.00 3.02
718 1647 4.116238 GTGGCCGAATTGAAAAACAGAAA 58.884 39.130 0.00 0.00 0.00 2.52
765 1694 2.657960 CGTCTACGCGCTGATTAGTA 57.342 50.000 5.73 0.00 0.00 1.82
766 1695 2.978013 CGTCTACGCGCTGATTAGTAA 58.022 47.619 5.73 0.00 0.00 2.24
768 1697 3.973135 CGTCTACGCGCTGATTAGTAAAT 59.027 43.478 5.73 0.00 0.00 1.40
769 1698 4.086804 CGTCTACGCGCTGATTAGTAAATC 59.913 45.833 5.73 0.00 41.69 2.17
770 1699 4.086804 GTCTACGCGCTGATTAGTAAATCG 59.913 45.833 5.73 0.00 43.84 3.34
771 1700 2.805845 ACGCGCTGATTAGTAAATCGT 58.194 42.857 5.73 0.00 43.84 3.73
772 1701 3.184541 ACGCGCTGATTAGTAAATCGTT 58.815 40.909 5.73 0.00 43.84 3.85
785 1725 1.510776 AATCGTTTACGCGTTTCCCA 58.489 45.000 20.78 0.00 39.60 4.37
819 1759 1.689273 CCCCTCTTTATCACCGGAGAG 59.311 57.143 9.46 8.72 36.30 3.20
820 1760 2.389715 CCCTCTTTATCACCGGAGAGT 58.610 52.381 9.46 0.00 35.08 3.24
911 1860 4.864334 CCCCCGCATCACTGCTCC 62.864 72.222 0.00 0.00 46.65 4.70
912 1861 4.100084 CCCCGCATCACTGCTCCA 62.100 66.667 0.00 0.00 46.65 3.86
949 1898 4.994471 CTCACCACAGCCTGCGCA 62.994 66.667 10.98 10.98 37.52 6.09
981 1934 0.097674 CGCCGCAAGAATCCAAGAAG 59.902 55.000 0.00 0.00 43.02 2.85
984 1937 1.167851 CGCAAGAATCCAAGAAGCCA 58.832 50.000 0.00 0.00 43.02 4.75
985 1938 1.135575 CGCAAGAATCCAAGAAGCCAC 60.136 52.381 0.00 0.00 43.02 5.01
988 1941 0.693049 AGAATCCAAGAAGCCACCGT 59.307 50.000 0.00 0.00 0.00 4.83
1039 1992 2.046892 TGGCGCTGCTCTTCTTCC 60.047 61.111 7.64 0.00 0.00 3.46
1042 1995 1.217779 GCGCTGCTCTTCTTCCTCT 59.782 57.895 0.00 0.00 0.00 3.69
1167 2132 4.794648 GCGGGCCTGGTGCACATA 62.795 66.667 20.43 5.99 46.87 2.29
1272 2240 0.321671 TCTTCTTCCACTTCCTGGCG 59.678 55.000 0.00 0.00 40.39 5.69
1576 2561 1.301401 GAGTACTGCCACGCCAACA 60.301 57.895 0.00 0.00 0.00 3.33
2072 3072 2.443016 CGCCTGGTAGAGGGAGCT 60.443 66.667 0.00 0.00 43.07 4.09
2240 3250 3.452786 CTGCGCGAGGAGGGAGAA 61.453 66.667 12.10 0.00 46.80 2.87
2346 3364 1.880941 GAGGTGGACATTCTAGGGGT 58.119 55.000 0.00 0.00 0.00 4.95
2395 3413 5.688621 GGCGATGTACAATTCGTTGATAGTA 59.311 40.000 17.55 0.00 37.66 1.82
2410 3428 6.318144 CGTTGATAGTACTAGGAAAGACTGGA 59.682 42.308 8.85 0.00 0.00 3.86
2457 3475 8.562892 ACGATTCTTTCATTCATAATAAGCCTG 58.437 33.333 0.00 0.00 0.00 4.85
2460 3478 7.031226 TCTTTCATTCATAATAAGCCTGTGC 57.969 36.000 0.00 0.00 37.95 4.57
2495 3517 6.449698 TGAAATTCTGGTCTCTGCATTTTTC 58.550 36.000 0.00 0.00 0.00 2.29
2535 3557 6.875726 CAGTTGAATTGAGTGGATTCTCACTA 59.124 38.462 7.50 0.00 46.76 2.74
2536 3558 7.551974 CAGTTGAATTGAGTGGATTCTCACTAT 59.448 37.037 7.50 0.00 46.76 2.12
2537 3559 8.762645 AGTTGAATTGAGTGGATTCTCACTATA 58.237 33.333 7.50 1.66 46.76 1.31
2538 3560 9.553064 GTTGAATTGAGTGGATTCTCACTATAT 57.447 33.333 7.50 3.36 46.76 0.86
2548 3570 9.526713 GTGGATTCTCACTATATATATGCTGTG 57.473 37.037 5.44 10.94 34.98 3.66
2584 3606 4.885325 GTGGTTTGTCCTTGGAAGTCTTAA 59.115 41.667 0.00 0.00 37.07 1.85
2639 3666 7.510549 AACTTAGCTGAGTTCTGCATTTTTA 57.489 32.000 17.56 0.00 42.33 1.52
2641 3668 8.115490 ACTTAGCTGAGTTCTGCATTTTTATT 57.885 30.769 5.11 0.00 42.33 1.40
2643 3670 8.746922 TTAGCTGAGTTCTGCATTTTTATTTG 57.253 30.769 12.54 0.00 42.33 2.32
2653 3680 9.761504 TTCTGCATTTTTATTTGATTCAGAACA 57.238 25.926 0.00 0.00 34.39 3.18
2660 3687 2.205022 TTGATTCAGAACAGGGCCAG 57.795 50.000 6.18 0.00 0.00 4.85
2719 3778 2.350293 GCAATTTTCGCCGGCAAATTTT 60.350 40.909 26.42 17.98 31.54 1.82
2751 3810 6.127338 CCTGATGTACTACATTCTCCTGTGAA 60.127 42.308 3.14 0.00 39.27 3.18
2753 3812 7.851228 TGATGTACTACATTCTCCTGTGAAAT 58.149 34.615 3.14 0.00 39.27 2.17
2755 3814 7.239763 TGTACTACATTCTCCTGTGAAATCA 57.760 36.000 0.00 0.00 0.00 2.57
2756 3815 7.676004 TGTACTACATTCTCCTGTGAAATCAA 58.324 34.615 0.00 0.00 0.00 2.57
2757 3816 8.321353 TGTACTACATTCTCCTGTGAAATCAAT 58.679 33.333 0.00 0.00 0.00 2.57
2758 3817 9.817809 GTACTACATTCTCCTGTGAAATCAATA 57.182 33.333 0.00 0.00 0.00 1.90
2759 3818 8.723942 ACTACATTCTCCTGTGAAATCAATAC 57.276 34.615 0.00 0.00 0.00 1.89
2760 3819 8.543774 ACTACATTCTCCTGTGAAATCAATACT 58.456 33.333 0.00 0.00 0.00 2.12
2765 3824 8.547967 TTCTCCTGTGAAATCAATACTACAAC 57.452 34.615 0.00 0.00 0.00 3.32
2908 3968 2.818751 TTCCCGCCTGGTTTCATATT 57.181 45.000 0.00 0.00 34.77 1.28
2909 3969 2.818751 TCCCGCCTGGTTTCATATTT 57.181 45.000 0.00 0.00 34.77 1.40
2910 3970 2.374184 TCCCGCCTGGTTTCATATTTG 58.626 47.619 0.00 0.00 34.77 2.32
2911 3971 1.202405 CCCGCCTGGTTTCATATTTGC 60.202 52.381 0.00 0.00 0.00 3.68
2912 3972 1.750778 CCGCCTGGTTTCATATTTGCT 59.249 47.619 0.00 0.00 0.00 3.91
2913 3973 2.948979 CCGCCTGGTTTCATATTTGCTA 59.051 45.455 0.00 0.00 0.00 3.49
2914 3974 3.003689 CCGCCTGGTTTCATATTTGCTAG 59.996 47.826 0.00 0.00 0.00 3.42
2934 3994 5.918011 GCTAGTGCTAGTGCTACTATTTGAG 59.082 44.000 7.90 0.00 40.48 3.02
2939 3999 2.544685 AGTGCTACTATTTGAGCTGCG 58.455 47.619 0.00 0.00 39.54 5.18
2947 4008 1.171308 ATTTGAGCTGCGCATCAACT 58.829 45.000 22.51 16.11 35.25 3.16
2956 4017 3.173599 CTGCGCATCAACTTACATTTGG 58.826 45.455 12.24 0.00 0.00 3.28
3059 4122 7.048512 GTGGCTATCACCTGTTTAACTTATCT 58.951 38.462 0.00 0.00 40.39 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.602978 TCTTTCTCTGGTGGTCTTAAGAGTT 59.397 40.000 5.12 0.00 37.88 3.01
42 43 5.730296 TCTTTCTCTGGTGGTCTTAAGAG 57.270 43.478 5.12 0.00 37.99 2.85
43 44 5.221661 GGTTCTTTCTCTGGTGGTCTTAAGA 60.222 44.000 0.00 0.00 0.00 2.10
44 45 4.998033 GGTTCTTTCTCTGGTGGTCTTAAG 59.002 45.833 0.00 0.00 0.00 1.85
45 46 4.658901 AGGTTCTTTCTCTGGTGGTCTTAA 59.341 41.667 0.00 0.00 0.00 1.85
76 77 2.788786 GCTCACGTTGACATTTTGTTGG 59.211 45.455 0.00 0.00 0.00 3.77
165 168 1.274596 CACACGACCACGCCTATAAC 58.725 55.000 0.00 0.00 43.96 1.89
308 311 7.789026 TCATATAGCTGGGATATGTTGAGATG 58.211 38.462 12.57 0.00 38.11 2.90
326 329 9.964303 GGTATCTAGATGATGTGCTTCATATAG 57.036 37.037 15.79 16.79 44.04 1.31
361 364 7.431084 GGCTCGCGAAAGAAATTAAAATTGATA 59.569 33.333 11.33 0.00 0.00 2.15
365 368 5.709966 AGGCTCGCGAAAGAAATTAAAATT 58.290 33.333 11.33 0.00 0.00 1.82
376 379 1.142778 GCTGACTAGGCTCGCGAAAG 61.143 60.000 11.33 8.05 0.00 2.62
377 380 1.153823 GCTGACTAGGCTCGCGAAA 60.154 57.895 11.33 0.00 0.00 3.46
378 381 2.490217 GCTGACTAGGCTCGCGAA 59.510 61.111 11.33 0.00 0.00 4.70
379 382 3.877357 CGCTGACTAGGCTCGCGA 61.877 66.667 22.83 9.26 45.99 5.87
380 383 3.396911 TTCGCTGACTAGGCTCGCG 62.397 63.158 21.73 21.73 44.63 5.87
381 384 1.587613 CTTCGCTGACTAGGCTCGC 60.588 63.158 0.00 0.00 0.00 5.03
429 451 7.611467 TGTCTGGTCTATAAAGTCAATTGCATT 59.389 33.333 0.00 0.00 0.00 3.56
464 486 7.441836 ACATATTTCTGGCGTTGATATGTCTA 58.558 34.615 9.27 0.00 38.75 2.59
468 490 6.544038 TGACATATTTCTGGCGTTGATATG 57.456 37.500 8.34 8.34 36.96 1.78
476 498 7.946655 TTAGACTAATGACATATTTCTGGCG 57.053 36.000 0.00 0.00 0.00 5.69
519 541 4.160736 TGTATATCTCTTGGCATCGACG 57.839 45.455 0.00 0.00 0.00 5.12
523 545 6.370994 CCTCATGTTGTATATCTCTTGGCATC 59.629 42.308 0.00 0.00 0.00 3.91
595 1494 2.822561 TGCACTGAGGTTTGTCAAAACA 59.177 40.909 15.59 8.14 46.30 2.83
596 1495 3.502191 TGCACTGAGGTTTGTCAAAAC 57.498 42.857 5.12 5.12 44.19 2.43
598 1497 3.023119 ACATGCACTGAGGTTTGTCAAA 58.977 40.909 0.00 0.00 0.00 2.69
599 1498 2.653726 ACATGCACTGAGGTTTGTCAA 58.346 42.857 0.00 0.00 0.00 3.18
602 1501 4.160252 AGAAAAACATGCACTGAGGTTTGT 59.840 37.500 0.00 0.00 34.03 2.83
603 1502 4.685924 AGAAAAACATGCACTGAGGTTTG 58.314 39.130 0.00 0.00 34.03 2.93
713 1642 3.257393 CTCGGTCACTTCCATCTTTCTG 58.743 50.000 0.00 0.00 0.00 3.02
717 1646 0.976641 TGCTCGGTCACTTCCATCTT 59.023 50.000 0.00 0.00 0.00 2.40
718 1647 0.976641 TTGCTCGGTCACTTCCATCT 59.023 50.000 0.00 0.00 0.00 2.90
763 1692 3.120718 TGGGAAACGCGTAAACGATTTAC 60.121 43.478 14.46 0.76 43.02 2.01
765 1694 1.872313 TGGGAAACGCGTAAACGATTT 59.128 42.857 14.46 0.00 43.02 2.17
766 1695 1.510776 TGGGAAACGCGTAAACGATT 58.489 45.000 14.46 0.37 43.02 3.34
768 1697 1.004079 GTTTGGGAAACGCGTAAACGA 60.004 47.619 14.46 0.00 43.02 3.85
769 1698 1.387924 GTTTGGGAAACGCGTAAACG 58.612 50.000 14.46 0.00 43.27 3.60
958 1911 2.512515 GGATTCTTGCGGCGCTCT 60.513 61.111 33.26 12.46 0.00 4.09
1150 2115 4.794648 TATGTGCACCAGGCCCGC 62.795 66.667 15.69 0.00 43.89 6.13
1155 2120 0.107066 TCATGGCTATGTGCACCAGG 60.107 55.000 15.69 6.49 45.15 4.45
1167 2132 4.148825 GCGTCGAGGGTCATGGCT 62.149 66.667 7.31 0.00 0.00 4.75
1246 2214 2.333014 GAAGTGGAAGAAGAGCGACTG 58.667 52.381 0.00 0.00 0.00 3.51
1576 2561 1.437986 GCGTGAAGTAGCGGGAGAT 59.562 57.895 0.00 0.00 0.00 2.75
2072 3072 5.910614 TGTATCTAGTCAGTACAGCTACGA 58.089 41.667 0.00 0.00 0.00 3.43
2179 3179 3.849951 CCTCGCCGCCCTGTACAT 61.850 66.667 0.00 0.00 0.00 2.29
2240 3250 6.019748 TCTTCTTTTCTCTATCCACCACTCT 58.980 40.000 0.00 0.00 0.00 3.24
2312 3327 3.146066 CCACCTCGACCAAAAAGAATCA 58.854 45.455 0.00 0.00 0.00 2.57
2395 3413 7.229506 CAGAACAAAATTCCAGTCTTTCCTAGT 59.770 37.037 0.00 0.00 0.00 2.57
2410 3428 9.528018 AATCGTCAATAACAACAGAACAAAATT 57.472 25.926 0.00 0.00 0.00 1.82
2457 3475 5.084722 CAGAATTTCAGATCAAGAACGCAC 58.915 41.667 0.00 0.00 0.00 5.34
2460 3478 5.641209 AGACCAGAATTTCAGATCAAGAACG 59.359 40.000 0.00 0.00 0.00 3.95
2495 3517 3.951306 TCAACTGAATTTGACGCAACTG 58.049 40.909 0.00 0.00 30.29 3.16
2535 3557 9.819267 CATCAGAATCAGACACAGCATATATAT 57.181 33.333 0.00 0.00 0.00 0.86
2536 3558 8.810041 ACATCAGAATCAGACACAGCATATATA 58.190 33.333 0.00 0.00 0.00 0.86
2537 3559 7.603024 CACATCAGAATCAGACACAGCATATAT 59.397 37.037 0.00 0.00 0.00 0.86
2538 3560 6.927381 CACATCAGAATCAGACACAGCATATA 59.073 38.462 0.00 0.00 0.00 0.86
2539 3561 5.758784 CACATCAGAATCAGACACAGCATAT 59.241 40.000 0.00 0.00 0.00 1.78
2544 3566 3.935315 ACCACATCAGAATCAGACACAG 58.065 45.455 0.00 0.00 0.00 3.66
2548 3570 4.154918 GGACAAACCACATCAGAATCAGAC 59.845 45.833 0.00 0.00 38.79 3.51
2584 3606 2.148916 TGACATTCGAGCGACAGTTT 57.851 45.000 0.00 0.00 0.00 2.66
2639 3666 3.094572 CTGGCCCTGTTCTGAATCAAAT 58.905 45.455 0.00 0.00 0.00 2.32
2641 3668 1.887956 GCTGGCCCTGTTCTGAATCAA 60.888 52.381 0.00 0.00 0.00 2.57
2643 3670 0.322816 TGCTGGCCCTGTTCTGAATC 60.323 55.000 0.00 0.00 0.00 2.52
2653 3680 1.980772 GCAGAACATTGCTGGCCCT 60.981 57.895 0.00 0.00 40.89 5.19
2660 3687 2.634982 TTCAATCCGCAGAACATTGC 57.365 45.000 0.00 0.00 40.67 3.56
2719 3778 5.187772 AGAATGTAGTACATCAGGAACAGCA 59.812 40.000 16.06 0.00 37.97 4.41
2753 3812 9.696572 AGTATAACAGAGGAGTTGTAGTATTGA 57.303 33.333 0.00 0.00 30.17 2.57
2757 3816 9.964354 TTGTAGTATAACAGAGGAGTTGTAGTA 57.036 33.333 0.00 0.00 32.96 1.82
2758 3817 8.738106 GTTGTAGTATAACAGAGGAGTTGTAGT 58.262 37.037 5.01 0.00 34.48 2.73
2759 3818 8.958506 AGTTGTAGTATAACAGAGGAGTTGTAG 58.041 37.037 11.77 0.00 33.07 2.74
2760 3819 8.874744 AGTTGTAGTATAACAGAGGAGTTGTA 57.125 34.615 11.77 0.00 33.07 2.41
2765 3824 7.633193 ACAGAGTTGTAGTATAACAGAGGAG 57.367 40.000 11.77 0.00 35.25 3.69
2799 3858 6.818644 TGTAGTATTGATTTCCTGCAGAAGAC 59.181 38.462 17.39 7.76 35.40 3.01
2908 3968 5.854010 AATAGTAGCACTAGCACTAGCAA 57.146 39.130 4.58 0.00 45.49 3.91
2909 3969 5.359860 TCAAATAGTAGCACTAGCACTAGCA 59.640 40.000 4.58 0.00 45.49 3.49
2910 3970 5.833082 TCAAATAGTAGCACTAGCACTAGC 58.167 41.667 4.58 0.00 45.49 3.42
2911 3971 5.918011 GCTCAAATAGTAGCACTAGCACTAG 59.082 44.000 3.10 3.10 45.49 2.57
2912 3972 5.594725 AGCTCAAATAGTAGCACTAGCACTA 59.405 40.000 0.00 0.00 45.49 2.74
2913 3973 4.404073 AGCTCAAATAGTAGCACTAGCACT 59.596 41.667 0.00 0.00 45.49 4.40
2914 3974 4.505922 CAGCTCAAATAGTAGCACTAGCAC 59.494 45.833 0.00 0.00 45.49 4.40
2939 3999 6.012658 TCAAGACCAAATGTAAGTTGATGC 57.987 37.500 0.00 0.00 46.37 3.91
2947 4008 5.769662 AGATGTTGCTCAAGACCAAATGTAA 59.230 36.000 0.00 0.00 0.00 2.41
2956 4017 6.203723 ACTTGTTTAGAGATGTTGCTCAAGAC 59.796 38.462 0.00 0.00 37.37 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.