Multiple sequence alignment - TraesCS7B01G103700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G103700 chr7B 100.000 9576 0 0 1 9576 119212146 119202571 0.000000e+00 17684.0
1 TraesCS7B01G103700 chr7A 96.359 4998 140 17 4553 9541 211709701 211704737 0.000000e+00 8183.0
2 TraesCS7B01G103700 chr7A 94.540 3608 140 28 713 4277 211713793 211710200 0.000000e+00 5518.0
3 TraesCS7B01G103700 chr7A 97.838 185 3 1 4275 4459 211709889 211709706 1.550000e-82 318.0
4 TraesCS7B01G103700 chr7A 81.505 319 38 8 299 606 239238832 239239140 9.610000e-60 243.0
5 TraesCS7B01G103700 chr7D 94.694 3788 146 28 628 4377 156800927 156797157 0.000000e+00 5830.0
6 TraesCS7B01G103700 chr7D 96.497 2398 64 7 4880 7276 156796608 156794230 0.000000e+00 3945.0
7 TraesCS7B01G103700 chr7D 95.028 2313 96 15 7270 9575 156794036 156791736 0.000000e+00 3616.0
8 TraesCS7B01G103700 chr7D 87.732 269 29 3 4523 4790 156796864 156796599 2.600000e-80 311.0
9 TraesCS7B01G103700 chr7D 93.333 90 4 2 4378 4466 156797071 156796983 2.170000e-26 132.0
10 TraesCS7B01G103700 chr7D 87.000 100 7 5 4458 4551 5172035 5171936 3.660000e-19 108.0
11 TraesCS7B01G103700 chr7D 87.838 74 3 5 4797 4870 454086047 454086114 2.220000e-11 82.4
12 TraesCS7B01G103700 chr6A 83.750 3717 559 34 4891 8577 12389849 12393550 0.000000e+00 3476.0
13 TraesCS7B01G103700 chr6A 84.157 3118 435 42 1001 4074 12385928 12389030 0.000000e+00 2966.0
14 TraesCS7B01G103700 chr6A 90.909 55 2 3 4797 4851 235046143 235046092 4.800000e-08 71.3
15 TraesCS7B01G103700 chr6B 83.826 3685 551 30 4891 8545 20683963 20687632 0.000000e+00 3461.0
16 TraesCS7B01G103700 chr6B 83.974 3120 440 41 1001 4074 20680043 20683148 0.000000e+00 2937.0
17 TraesCS7B01G103700 chr6B 87.742 310 20 5 308 599 144966812 144967121 7.120000e-91 346.0
18 TraesCS7B01G103700 chr6B 87.261 314 21 5 304 600 151597146 151596835 3.310000e-89 340.0
19 TraesCS7B01G103700 chr6B 90.385 260 18 3 324 576 76103641 76103900 1.540000e-87 335.0
20 TraesCS7B01G103700 chr6B 87.625 299 18 6 297 576 561143015 561143313 7.170000e-86 329.0
21 TraesCS7B01G103700 chr6B 86.913 298 23 8 308 599 207105037 207105324 4.310000e-83 320.0
22 TraesCS7B01G103700 chr6B 88.448 277 13 6 341 599 75642078 75642353 5.580000e-82 316.0
23 TraesCS7B01G103700 chr6B 91.011 89 7 1 4794 4881 464922106 464922018 1.690000e-22 119.0
24 TraesCS7B01G103700 chr6D 83.549 3714 562 36 4891 8569 10909797 10913496 0.000000e+00 3428.0
25 TraesCS7B01G103700 chr6D 83.931 3124 439 42 1001 4074 10905872 10908982 0.000000e+00 2929.0
26 TraesCS7B01G103700 chr6D 93.671 79 4 1 4793 4870 126632452 126632374 6.080000e-22 117.0
27 TraesCS7B01G103700 chr6D 90.805 87 8 0 4795 4881 299908779 299908693 6.080000e-22 117.0
28 TraesCS7B01G103700 chr1B 90.301 299 23 2 307 599 216784597 216784299 4.190000e-103 387.0
29 TraesCS7B01G103700 chr1B 89.057 265 22 3 341 599 85112572 85112835 1.200000e-83 322.0
30 TraesCS7B01G103700 chr1B 83.544 79 7 5 4804 4882 236998674 236998602 1.730000e-07 69.4
31 TraesCS7B01G103700 chr3B 90.816 294 17 4 307 599 128508611 128508327 1.510000e-102 385.0
32 TraesCS7B01G103700 chr3B 87.119 295 17 3 305 598 133443930 133444204 2.010000e-81 315.0
33 TraesCS7B01G103700 chr4B 90.753 292 14 5 308 599 134599468 134599190 2.520000e-100 377.0
34 TraesCS7B01G103700 chr5B 88.997 309 17 3 308 599 640134866 640135174 5.460000e-97 366.0
35 TraesCS7B01G103700 chr5B 90.681 279 19 3 305 576 50541982 50542260 1.970000e-96 364.0
36 TraesCS7B01G103700 chr5B 81.173 324 21 9 304 599 302838379 302838068 3.480000e-54 224.0
37 TraesCS7B01G103700 chr5B 83.721 86 8 5 4785 4870 498272080 498272159 1.030000e-09 76.8
38 TraesCS7B01G103700 chr2B 87.410 278 26 5 307 576 395284939 395285215 2.600000e-80 311.0
39 TraesCS7B01G103700 chr2B 83.391 289 28 6 298 570 193211036 193211320 5.740000e-62 250.0
40 TraesCS7B01G103700 chr2B 88.298 94 5 1 4458 4551 103270387 103270300 3.660000e-19 108.0
41 TraesCS7B01G103700 chr1D 78.970 233 27 9 348 567 445570247 445570024 1.300000e-28 139.0
42 TraesCS7B01G103700 chr1D 86.869 99 7 2 4450 4548 18077885 18077977 1.320000e-18 106.0
43 TraesCS7B01G103700 chr4D 95.000 80 4 0 4793 4872 85340953 85340874 1.010000e-24 126.0
44 TraesCS7B01G103700 chr3D 93.902 82 5 0 4793 4874 250930841 250930922 3.630000e-24 124.0
45 TraesCS7B01G103700 chr3D 87.000 100 6 2 4455 4553 24530579 24530672 1.320000e-18 106.0
46 TraesCS7B01G103700 chr3D 87.838 74 3 5 4797 4870 552668580 552668513 2.220000e-11 82.4
47 TraesCS7B01G103700 chr2A 93.590 78 5 0 4795 4872 144955329 144955252 6.080000e-22 117.0
48 TraesCS7B01G103700 chr2A 92.500 80 6 0 4793 4872 333751394 333751315 2.190000e-21 115.0
49 TraesCS7B01G103700 chr2D 88.000 100 4 3 4451 4549 649593294 649593386 2.830000e-20 111.0
50 TraesCS7B01G103700 chr2D 86.667 105 6 4 4458 4562 511922688 511922592 1.020000e-19 110.0
51 TraesCS7B01G103700 chrUn 89.130 92 4 1 4457 4548 94846971 94847056 1.020000e-19 110.0
52 TraesCS7B01G103700 chrUn 87.629 97 5 2 4453 4549 62345014 62344925 1.320000e-18 106.0
53 TraesCS7B01G103700 chrUn 87.629 97 5 2 4453 4549 62462055 62461966 1.320000e-18 106.0
54 TraesCS7B01G103700 chr3A 87.838 74 3 5 4797 4870 543724422 543724489 2.220000e-11 82.4
55 TraesCS7B01G103700 chr1A 87.671 73 3 5 4797 4869 305339507 305339441 7.970000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G103700 chr7B 119202571 119212146 9575 True 17684.0 17684 100.000000 1 9576 1 chr7B.!!$R1 9575
1 TraesCS7B01G103700 chr7A 211704737 211713793 9056 True 4673.0 8183 96.245667 713 9541 3 chr7A.!!$R1 8828
2 TraesCS7B01G103700 chr7D 156791736 156800927 9191 True 2766.8 5830 93.456800 628 9575 5 chr7D.!!$R2 8947
3 TraesCS7B01G103700 chr6A 12385928 12393550 7622 False 3221.0 3476 83.953500 1001 8577 2 chr6A.!!$F1 7576
4 TraesCS7B01G103700 chr6B 20680043 20687632 7589 False 3199.0 3461 83.900000 1001 8545 2 chr6B.!!$F6 7544
5 TraesCS7B01G103700 chr6D 10905872 10913496 7624 False 3178.5 3428 83.740000 1001 8569 2 chr6D.!!$F1 7568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.033504 GTGTGAAGAAGAGCCGGTGA 59.966 55.000 1.90 0.0 0.00 4.02 F
306 307 0.103937 GAAGAGCCGGTGATCAGGAG 59.896 60.000 1.90 0.0 0.00 3.69 F
617 618 0.179000 ATTCATGAGCCCACGAGGTC 59.821 55.000 0.00 0.0 38.26 3.85 F
762 763 0.315568 GTCTCCTATAGCACCCGCAG 59.684 60.000 0.00 0.0 42.27 5.18 F
975 1019 0.629058 TGCCAACTAATTCCTCCCCC 59.371 55.000 0.00 0.0 0.00 5.40 F
976 1020 0.927029 GCCAACTAATTCCTCCCCCT 59.073 55.000 0.00 0.0 0.00 4.79 F
1933 2029 1.073897 AGAGCTGCAACAAGGGTCC 59.926 57.895 1.02 0.0 0.00 4.46 F
3200 3302 1.065358 CGGTATTCTTGCGTGTTCGT 58.935 50.000 0.00 0.0 39.49 3.85 F
4472 5076 0.790993 AAGGTACTCCCTCAGTCCCA 59.209 55.000 0.00 0.0 45.47 4.37 F
4642 5308 2.232452 GCTGTCTCTTTGGAGCAGAGTA 59.768 50.000 15.79 0.0 41.60 2.59 F
5959 6672 0.250513 CACTGCCCCCTCTGTACTTC 59.749 60.000 0.00 0.0 0.00 3.01 F
7302 8218 1.009829 GCACCTCGCAAGGAATACTG 58.990 55.000 0.00 0.0 46.67 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1575 2.158986 AGGGTTGATGAGCTTCTCGATG 60.159 50.000 0.00 0.00 32.35 3.84 R
1933 2029 2.390938 TGTCTTGCACGTCTAAAGTCG 58.609 47.619 0.00 0.00 0.00 4.18 R
2379 2475 6.248433 ACCATCCACTTTTGATATCAACTGT 58.752 36.000 17.76 15.33 35.28 3.55 R
2651 2753 4.260948 GCAGTATCATAAACCTTGCTCTGC 60.261 45.833 0.00 0.00 37.87 4.26 R
2759 2861 5.426185 ACCATCCTTCATATGCAAACCAATT 59.574 36.000 0.00 0.00 0.00 2.32 R
3096 3198 2.380084 TCAATCTGCCGTACTGTTCC 57.620 50.000 0.00 0.00 0.00 3.62 R
3635 3737 0.107703 GATTGACACCCCATGCGAGA 60.108 55.000 0.00 0.00 0.00 4.04 R
4588 5254 0.698238 AACCCATACAAGCAGAGGCA 59.302 50.000 0.00 0.00 44.61 4.75 R
5773 6486 1.634973 TCATCCCACTGGAAATCAGCA 59.365 47.619 0.00 0.00 45.98 4.41 R
6275 6988 3.068024 ACAATTCGCATGTTGGTTTCACT 59.932 39.130 0.00 0.00 0.00 3.41 R
7872 8788 0.678048 GGCTGCCAGGTTCCTTACAG 60.678 60.000 15.17 11.40 0.00 2.74 R
8729 9657 1.478916 TCCACTTCGTGTCACAGACAA 59.521 47.619 3.42 0.00 44.49 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 7.624706 CGTAAGCTCTCACGAATATAACATT 57.375 36.000 9.21 0.00 40.56 2.71
90 91 7.494130 CGTAAGCTCTCACGAATATAACATTG 58.506 38.462 9.21 0.00 40.56 2.82
91 92 7.167635 CGTAAGCTCTCACGAATATAACATTGT 59.832 37.037 9.21 0.00 40.56 2.71
92 93 7.470289 AAGCTCTCACGAATATAACATTGTC 57.530 36.000 0.00 0.00 0.00 3.18
93 94 5.986135 AGCTCTCACGAATATAACATTGTCC 59.014 40.000 0.00 0.00 0.00 4.02
94 95 5.107837 GCTCTCACGAATATAACATTGTCCG 60.108 44.000 0.00 0.00 0.00 4.79
95 96 6.139048 TCTCACGAATATAACATTGTCCGA 57.861 37.500 0.00 0.00 0.00 4.55
96 97 6.206498 TCTCACGAATATAACATTGTCCGAG 58.794 40.000 0.00 0.00 0.00 4.63
97 98 6.038936 TCTCACGAATATAACATTGTCCGAGA 59.961 38.462 0.00 0.00 0.00 4.04
98 99 5.975344 TCACGAATATAACATTGTCCGAGAC 59.025 40.000 0.00 0.00 0.00 3.36
99 100 5.977725 CACGAATATAACATTGTCCGAGACT 59.022 40.000 0.00 0.00 33.15 3.24
100 101 7.012610 TCACGAATATAACATTGTCCGAGACTA 59.987 37.037 0.00 0.00 33.15 2.59
101 102 7.323895 CACGAATATAACATTGTCCGAGACTAG 59.676 40.741 0.00 0.00 33.15 2.57
102 103 7.013083 ACGAATATAACATTGTCCGAGACTAGT 59.987 37.037 0.00 0.00 33.15 2.57
103 104 7.534578 CGAATATAACATTGTCCGAGACTAGTC 59.465 40.741 15.41 15.41 33.15 2.59
104 105 8.466617 AATATAACATTGTCCGAGACTAGTCT 57.533 34.615 25.44 25.44 43.78 3.24
105 106 6.777213 ATAACATTGTCCGAGACTAGTCTT 57.223 37.500 25.86 10.43 40.61 3.01
106 107 7.876936 ATAACATTGTCCGAGACTAGTCTTA 57.123 36.000 25.86 12.35 40.61 2.10
107 108 5.821516 ACATTGTCCGAGACTAGTCTTAG 57.178 43.478 25.86 20.99 40.61 2.18
108 109 5.254901 ACATTGTCCGAGACTAGTCTTAGT 58.745 41.667 25.86 12.54 42.79 2.24
129 130 6.287589 AGTCGACTAAGATTTGACAATCCT 57.712 37.500 18.46 0.00 39.95 3.24
130 131 6.102663 AGTCGACTAAGATTTGACAATCCTG 58.897 40.000 18.46 0.00 39.95 3.86
131 132 5.869888 GTCGACTAAGATTTGACAATCCTGT 59.130 40.000 8.70 0.00 39.95 4.00
132 133 6.369065 GTCGACTAAGATTTGACAATCCTGTT 59.631 38.462 8.70 0.00 39.95 3.16
133 134 6.934645 TCGACTAAGATTTGACAATCCTGTTT 59.065 34.615 0.00 0.00 39.95 2.83
134 135 7.444183 TCGACTAAGATTTGACAATCCTGTTTT 59.556 33.333 0.00 0.00 39.95 2.43
135 136 8.076178 CGACTAAGATTTGACAATCCTGTTTTT 58.924 33.333 0.00 0.00 39.95 1.94
158 159 9.640963 TTTTTGTAAAAATATATGAACCGGTGG 57.359 29.630 8.52 0.00 33.29 4.61
159 160 8.577048 TTTGTAAAAATATATGAACCGGTGGA 57.423 30.769 8.52 0.00 0.00 4.02
160 161 8.577048 TTGTAAAAATATATGAACCGGTGGAA 57.423 30.769 8.52 0.00 0.00 3.53
161 162 8.577048 TGTAAAAATATATGAACCGGTGGAAA 57.423 30.769 8.52 0.00 0.00 3.13
162 163 8.460428 TGTAAAAATATATGAACCGGTGGAAAC 58.540 33.333 8.52 0.00 0.00 2.78
163 164 6.459670 AAAATATATGAACCGGTGGAAACC 57.540 37.500 8.52 0.00 0.00 3.27
164 165 5.382664 AATATATGAACCGGTGGAAACCT 57.617 39.130 8.52 0.00 0.00 3.50
165 166 6.503560 AATATATGAACCGGTGGAAACCTA 57.496 37.500 8.52 0.00 0.00 3.08
166 167 6.697641 ATATATGAACCGGTGGAAACCTAT 57.302 37.500 8.52 1.76 0.00 2.57
167 168 3.732048 ATGAACCGGTGGAAACCTATT 57.268 42.857 8.52 0.00 0.00 1.73
168 169 3.512219 TGAACCGGTGGAAACCTATTT 57.488 42.857 8.52 0.00 0.00 1.40
169 170 3.834938 TGAACCGGTGGAAACCTATTTT 58.165 40.909 8.52 0.00 0.00 1.82
170 171 4.216708 TGAACCGGTGGAAACCTATTTTT 58.783 39.130 8.52 0.00 0.00 1.94
190 191 5.418310 TTTTCTAAAGAAAGCACGTCAGG 57.582 39.130 5.38 0.00 43.90 3.86
191 192 4.330944 TTCTAAAGAAAGCACGTCAGGA 57.669 40.909 0.00 0.00 0.00 3.86
192 193 4.330944 TCTAAAGAAAGCACGTCAGGAA 57.669 40.909 0.00 0.00 0.00 3.36
193 194 4.699637 TCTAAAGAAAGCACGTCAGGAAA 58.300 39.130 0.00 0.00 0.00 3.13
194 195 5.120399 TCTAAAGAAAGCACGTCAGGAAAA 58.880 37.500 0.00 0.00 0.00 2.29
195 196 3.971032 AAGAAAGCACGTCAGGAAAAG 57.029 42.857 0.00 0.00 0.00 2.27
196 197 3.194005 AGAAAGCACGTCAGGAAAAGA 57.806 42.857 0.00 0.00 0.00 2.52
197 198 3.541632 AGAAAGCACGTCAGGAAAAGAA 58.458 40.909 0.00 0.00 0.00 2.52
198 199 4.137543 AGAAAGCACGTCAGGAAAAGAAT 58.862 39.130 0.00 0.00 0.00 2.40
199 200 5.305585 AGAAAGCACGTCAGGAAAAGAATA 58.694 37.500 0.00 0.00 0.00 1.75
200 201 5.409826 AGAAAGCACGTCAGGAAAAGAATAG 59.590 40.000 0.00 0.00 0.00 1.73
201 202 3.600388 AGCACGTCAGGAAAAGAATAGG 58.400 45.455 0.00 0.00 0.00 2.57
202 203 2.678336 GCACGTCAGGAAAAGAATAGGG 59.322 50.000 0.00 0.00 0.00 3.53
203 204 3.270877 CACGTCAGGAAAAGAATAGGGG 58.729 50.000 0.00 0.00 0.00 4.79
204 205 3.055385 CACGTCAGGAAAAGAATAGGGGA 60.055 47.826 0.00 0.00 0.00 4.81
205 206 3.585732 ACGTCAGGAAAAGAATAGGGGAA 59.414 43.478 0.00 0.00 0.00 3.97
206 207 4.042435 ACGTCAGGAAAAGAATAGGGGAAA 59.958 41.667 0.00 0.00 0.00 3.13
207 208 4.395231 CGTCAGGAAAAGAATAGGGGAAAC 59.605 45.833 0.00 0.00 0.00 2.78
208 209 4.395231 GTCAGGAAAAGAATAGGGGAAACG 59.605 45.833 0.00 0.00 0.00 3.60
209 210 3.694566 CAGGAAAAGAATAGGGGAAACGG 59.305 47.826 0.00 0.00 0.00 4.44
210 211 3.021695 GGAAAAGAATAGGGGAAACGGG 58.978 50.000 0.00 0.00 0.00 5.28
211 212 2.139323 AAAGAATAGGGGAAACGGGC 57.861 50.000 0.00 0.00 0.00 6.13
212 213 1.296002 AAGAATAGGGGAAACGGGCT 58.704 50.000 0.00 0.00 0.00 5.19
213 214 0.546598 AGAATAGGGGAAACGGGCTG 59.453 55.000 0.00 0.00 0.00 4.85
214 215 0.465642 GAATAGGGGAAACGGGCTGG 60.466 60.000 0.00 0.00 0.00 4.85
215 216 2.567664 AATAGGGGAAACGGGCTGGC 62.568 60.000 0.00 0.00 0.00 4.85
218 219 4.759205 GGGAAACGGGCTGGCCAT 62.759 66.667 21.03 0.73 37.98 4.40
219 220 3.140814 GGAAACGGGCTGGCCATC 61.141 66.667 21.03 14.04 37.98 3.51
220 221 2.361104 GAAACGGGCTGGCCATCA 60.361 61.111 21.03 0.00 37.98 3.07
221 222 2.676471 AAACGGGCTGGCCATCAC 60.676 61.111 21.03 0.57 37.98 3.06
222 223 4.740822 AACGGGCTGGCCATCACC 62.741 66.667 21.03 8.67 37.98 4.02
226 227 4.722700 GGCTGGCCATCACCGTGT 62.723 66.667 5.51 0.00 35.81 4.49
227 228 2.267642 GCTGGCCATCACCGTGTA 59.732 61.111 5.51 0.00 0.00 2.90
228 229 1.376683 GCTGGCCATCACCGTGTAA 60.377 57.895 5.51 0.00 0.00 2.41
229 230 0.958382 GCTGGCCATCACCGTGTAAA 60.958 55.000 5.51 0.00 0.00 2.01
230 231 1.750193 CTGGCCATCACCGTGTAAAT 58.250 50.000 5.51 0.00 0.00 1.40
231 232 1.401552 CTGGCCATCACCGTGTAAATG 59.598 52.381 5.51 0.00 0.00 2.32
232 233 0.738389 GGCCATCACCGTGTAAATGG 59.262 55.000 11.66 11.66 41.34 3.16
233 234 0.738389 GCCATCACCGTGTAAATGGG 59.262 55.000 15.87 4.87 39.27 4.00
234 235 0.738389 CCATCACCGTGTAAATGGGC 59.262 55.000 9.06 0.00 35.95 5.36
235 236 0.738389 CATCACCGTGTAAATGGGCC 59.262 55.000 0.00 0.00 0.00 5.80
236 237 0.623723 ATCACCGTGTAAATGGGCCT 59.376 50.000 4.53 0.00 0.00 5.19
237 238 0.035820 TCACCGTGTAAATGGGCCTC 60.036 55.000 4.53 0.00 0.00 4.70
238 239 0.035439 CACCGTGTAAATGGGCCTCT 60.035 55.000 4.53 0.00 0.00 3.69
239 240 0.035439 ACCGTGTAAATGGGCCTCTG 60.035 55.000 4.53 0.00 0.00 3.35
240 241 1.376609 CCGTGTAAATGGGCCTCTGC 61.377 60.000 4.53 0.00 0.00 4.26
241 242 0.392998 CGTGTAAATGGGCCTCTGCT 60.393 55.000 4.53 0.00 37.74 4.24
242 243 1.839424 GTGTAAATGGGCCTCTGCTT 58.161 50.000 4.53 0.00 37.74 3.91
243 244 1.745653 GTGTAAATGGGCCTCTGCTTC 59.254 52.381 4.53 0.00 37.74 3.86
244 245 1.635487 TGTAAATGGGCCTCTGCTTCT 59.365 47.619 4.53 0.00 37.74 2.85
245 246 2.293170 GTAAATGGGCCTCTGCTTCTC 58.707 52.381 4.53 0.00 37.74 2.87
246 247 0.700564 AAATGGGCCTCTGCTTCTCA 59.299 50.000 4.53 0.00 37.74 3.27
247 248 0.255318 AATGGGCCTCTGCTTCTCAG 59.745 55.000 4.53 0.00 44.21 3.35
258 259 2.106477 GCTTCTCAGCTTGTTAGGCT 57.894 50.000 0.00 0.00 43.51 4.58
259 260 2.431454 GCTTCTCAGCTTGTTAGGCTT 58.569 47.619 0.00 0.00 43.51 4.35
260 261 2.816672 GCTTCTCAGCTTGTTAGGCTTT 59.183 45.455 0.00 0.00 43.51 3.51
261 262 3.365767 GCTTCTCAGCTTGTTAGGCTTTG 60.366 47.826 0.00 0.00 43.51 2.77
262 263 2.783135 TCTCAGCTTGTTAGGCTTTGG 58.217 47.619 0.00 0.00 38.03 3.28
263 264 2.371841 TCTCAGCTTGTTAGGCTTTGGA 59.628 45.455 0.00 0.00 38.03 3.53
264 265 3.009473 TCTCAGCTTGTTAGGCTTTGGAT 59.991 43.478 0.00 0.00 38.03 3.41
265 266 3.084039 TCAGCTTGTTAGGCTTTGGATG 58.916 45.455 0.00 0.00 38.03 3.51
266 267 2.165030 CAGCTTGTTAGGCTTTGGATGG 59.835 50.000 0.00 0.00 38.03 3.51
267 268 1.134995 GCTTGTTAGGCTTTGGATGGC 60.135 52.381 0.00 0.00 0.00 4.40
272 273 3.464494 GGCTTTGGATGGCCTGCC 61.464 66.667 3.32 5.82 44.48 4.85
273 274 3.464494 GCTTTGGATGGCCTGCCC 61.464 66.667 3.32 2.67 34.56 5.36
274 275 3.142838 CTTTGGATGGCCTGCCCG 61.143 66.667 3.32 0.00 35.87 6.13
275 276 3.944250 CTTTGGATGGCCTGCCCGT 62.944 63.158 3.32 0.00 35.87 5.28
276 277 4.738998 TTGGATGGCCTGCCCGTG 62.739 66.667 3.32 0.00 35.87 4.94
278 279 4.424711 GGATGGCCTGCCCGTGAA 62.425 66.667 3.32 0.00 35.87 3.18
279 280 2.361104 GATGGCCTGCCCGTGAAA 60.361 61.111 3.32 0.00 35.87 2.69
280 281 2.361610 ATGGCCTGCCCGTGAAAG 60.362 61.111 3.32 0.00 35.87 2.62
281 282 3.210012 ATGGCCTGCCCGTGAAAGT 62.210 57.895 3.32 0.00 35.87 2.66
282 283 3.365265 GGCCTGCCCGTGAAAGTG 61.365 66.667 0.00 0.00 0.00 3.16
283 284 2.594592 GCCTGCCCGTGAAAGTGT 60.595 61.111 0.00 0.00 0.00 3.55
284 285 2.908073 GCCTGCCCGTGAAAGTGTG 61.908 63.158 0.00 0.00 0.00 3.82
285 286 1.227823 CCTGCCCGTGAAAGTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
286 287 0.817634 CCTGCCCGTGAAAGTGTGAA 60.818 55.000 0.00 0.00 0.00 3.18
287 288 0.588252 CTGCCCGTGAAAGTGTGAAG 59.412 55.000 0.00 0.00 0.00 3.02
288 289 0.179234 TGCCCGTGAAAGTGTGAAGA 59.821 50.000 0.00 0.00 0.00 2.87
289 290 1.305201 GCCCGTGAAAGTGTGAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
290 291 1.264288 GCCCGTGAAAGTGTGAAGAAG 59.736 52.381 0.00 0.00 0.00 2.85
291 292 2.833794 CCCGTGAAAGTGTGAAGAAGA 58.166 47.619 0.00 0.00 0.00 2.87
292 293 2.802816 CCCGTGAAAGTGTGAAGAAGAG 59.197 50.000 0.00 0.00 0.00 2.85
293 294 2.221981 CCGTGAAAGTGTGAAGAAGAGC 59.778 50.000 0.00 0.00 0.00 4.09
294 295 2.221981 CGTGAAAGTGTGAAGAAGAGCC 59.778 50.000 0.00 0.00 0.00 4.70
295 296 2.221981 GTGAAAGTGTGAAGAAGAGCCG 59.778 50.000 0.00 0.00 0.00 5.52
296 297 1.801178 GAAAGTGTGAAGAAGAGCCGG 59.199 52.381 0.00 0.00 0.00 6.13
297 298 0.759346 AAGTGTGAAGAAGAGCCGGT 59.241 50.000 1.90 0.00 0.00 5.28
298 299 0.034059 AGTGTGAAGAAGAGCCGGTG 59.966 55.000 1.90 0.00 0.00 4.94
299 300 0.033504 GTGTGAAGAAGAGCCGGTGA 59.966 55.000 1.90 0.00 0.00 4.02
300 301 0.976641 TGTGAAGAAGAGCCGGTGAT 59.023 50.000 1.90 0.00 0.00 3.06
301 302 1.066858 TGTGAAGAAGAGCCGGTGATC 60.067 52.381 1.90 0.00 0.00 2.92
302 303 1.066858 GTGAAGAAGAGCCGGTGATCA 60.067 52.381 1.90 0.00 0.00 2.92
303 304 1.205655 TGAAGAAGAGCCGGTGATCAG 59.794 52.381 1.90 0.00 0.00 2.90
304 305 0.539051 AAGAAGAGCCGGTGATCAGG 59.461 55.000 1.90 0.00 0.00 3.86
305 306 0.324738 AGAAGAGCCGGTGATCAGGA 60.325 55.000 1.90 0.00 0.00 3.86
306 307 0.103937 GAAGAGCCGGTGATCAGGAG 59.896 60.000 1.90 0.00 0.00 3.69
307 308 0.616111 AAGAGCCGGTGATCAGGAGT 60.616 55.000 1.90 0.00 0.00 3.85
308 309 0.259065 AGAGCCGGTGATCAGGAGTA 59.741 55.000 1.90 0.00 0.00 2.59
309 310 1.133325 AGAGCCGGTGATCAGGAGTAT 60.133 52.381 1.90 0.00 0.00 2.12
310 311 2.108425 AGAGCCGGTGATCAGGAGTATA 59.892 50.000 1.90 0.00 0.00 1.47
311 312 2.229302 GAGCCGGTGATCAGGAGTATAC 59.771 54.545 1.90 0.00 0.00 1.47
312 313 1.272769 GCCGGTGATCAGGAGTATACC 59.727 57.143 1.90 0.00 0.00 2.73
313 314 2.877866 CCGGTGATCAGGAGTATACCT 58.122 52.381 0.00 0.00 41.43 3.08
322 323 1.844497 AGGAGTATACCTGGCCAAACC 59.156 52.381 7.01 1.59 39.01 3.27
323 324 1.844497 GGAGTATACCTGGCCAAACCT 59.156 52.381 7.01 0.00 40.22 3.50
324 325 2.158798 GGAGTATACCTGGCCAAACCTC 60.159 54.545 7.01 6.44 40.22 3.85
325 326 1.485066 AGTATACCTGGCCAAACCTCG 59.515 52.381 7.01 0.00 40.22 4.63
326 327 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
327 328 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
366 367 4.096003 GCCTAGCCAAGCCCGACA 62.096 66.667 0.00 0.00 0.00 4.35
367 368 2.125106 CCTAGCCAAGCCCGACAC 60.125 66.667 0.00 0.00 0.00 3.67
368 369 2.662596 CTAGCCAAGCCCGACACA 59.337 61.111 0.00 0.00 0.00 3.72
369 370 1.003839 CTAGCCAAGCCCGACACAA 60.004 57.895 0.00 0.00 0.00 3.33
370 371 0.605319 CTAGCCAAGCCCGACACAAA 60.605 55.000 0.00 0.00 0.00 2.83
371 372 0.179015 TAGCCAAGCCCGACACAAAA 60.179 50.000 0.00 0.00 0.00 2.44
372 373 1.040339 AGCCAAGCCCGACACAAAAA 61.040 50.000 0.00 0.00 0.00 1.94
386 387 2.600470 AAAAACTCAGGCCCGGGC 60.600 61.111 38.57 38.57 41.06 6.13
414 415 2.872408 CCATCGGGCATGTGTTTCT 58.128 52.632 0.00 0.00 0.00 2.52
415 416 0.452987 CCATCGGGCATGTGTTTCTG 59.547 55.000 0.00 0.00 0.00 3.02
416 417 0.452987 CATCGGGCATGTGTTTCTGG 59.547 55.000 0.00 0.00 0.00 3.86
417 418 0.680921 ATCGGGCATGTGTTTCTGGG 60.681 55.000 0.00 0.00 0.00 4.45
418 419 2.973082 GGGCATGTGTTTCTGGGC 59.027 61.111 0.00 0.00 0.00 5.36
419 420 2.649129 GGGCATGTGTTTCTGGGCC 61.649 63.158 0.00 0.00 40.63 5.80
420 421 2.649129 GGCATGTGTTTCTGGGCCC 61.649 63.158 17.59 17.59 35.42 5.80
421 422 2.993471 GCATGTGTTTCTGGGCCCG 61.993 63.158 19.37 12.57 0.00 6.13
422 423 1.303236 CATGTGTTTCTGGGCCCGA 60.303 57.895 19.37 14.97 0.00 5.14
423 424 1.002134 ATGTGTTTCTGGGCCCGAG 60.002 57.895 19.37 15.85 0.00 4.63
424 425 3.056328 GTGTTTCTGGGCCCGAGC 61.056 66.667 19.37 13.75 38.76 5.03
425 426 3.565214 TGTTTCTGGGCCCGAGCA 61.565 61.111 19.37 15.94 42.56 4.26
426 427 2.044946 GTTTCTGGGCCCGAGCAT 60.045 61.111 19.37 0.00 42.56 3.79
427 428 2.045045 TTTCTGGGCCCGAGCATG 60.045 61.111 19.37 2.75 42.56 4.06
428 429 2.905996 TTTCTGGGCCCGAGCATGT 61.906 57.895 19.37 0.00 42.56 3.21
429 430 1.558167 TTTCTGGGCCCGAGCATGTA 61.558 55.000 19.37 0.00 42.56 2.29
430 431 1.558167 TTCTGGGCCCGAGCATGTAA 61.558 55.000 19.37 2.99 42.56 2.41
431 432 1.077787 CTGGGCCCGAGCATGTAAA 60.078 57.895 19.37 0.00 42.56 2.01
432 433 0.679640 CTGGGCCCGAGCATGTAAAA 60.680 55.000 19.37 0.00 42.56 1.52
433 434 0.679640 TGGGCCCGAGCATGTAAAAG 60.680 55.000 19.37 0.00 42.56 2.27
434 435 1.433471 GGCCCGAGCATGTAAAAGC 59.567 57.895 0.00 0.00 42.56 3.51
435 436 1.433471 GCCCGAGCATGTAAAAGCC 59.567 57.895 0.00 0.00 39.53 4.35
436 437 2.004808 GCCCGAGCATGTAAAAGCCC 62.005 60.000 0.00 0.00 39.53 5.19
437 438 1.714899 CCCGAGCATGTAAAAGCCCG 61.715 60.000 0.00 0.00 0.00 6.13
438 439 1.024579 CCGAGCATGTAAAAGCCCGT 61.025 55.000 0.00 0.00 29.52 5.28
439 440 0.373716 CGAGCATGTAAAAGCCCGTC 59.626 55.000 0.00 0.00 0.00 4.79
440 441 0.373716 GAGCATGTAAAAGCCCGTCG 59.626 55.000 0.00 0.00 0.00 5.12
441 442 1.024579 AGCATGTAAAAGCCCGTCGG 61.025 55.000 3.60 3.60 0.00 4.79
469 470 3.723922 GGCCCAGCCCGACCTTTA 61.724 66.667 0.00 0.00 44.06 1.85
470 471 2.124695 GCCCAGCCCGACCTTTAG 60.125 66.667 0.00 0.00 0.00 1.85
471 472 2.590092 CCCAGCCCGACCTTTAGG 59.410 66.667 0.00 0.00 42.17 2.69
472 473 1.993391 CCCAGCCCGACCTTTAGGA 60.993 63.158 2.06 0.00 38.94 2.94
473 474 1.559065 CCCAGCCCGACCTTTAGGAA 61.559 60.000 2.06 0.00 38.94 3.36
474 475 0.326927 CCAGCCCGACCTTTAGGAAA 59.673 55.000 2.06 0.00 38.94 3.13
475 476 1.064685 CCAGCCCGACCTTTAGGAAAT 60.065 52.381 2.06 0.00 38.94 2.17
476 477 2.017049 CAGCCCGACCTTTAGGAAATG 58.983 52.381 2.06 0.00 38.94 2.32
477 478 1.064685 AGCCCGACCTTTAGGAAATGG 60.065 52.381 2.06 0.00 38.94 3.16
478 479 1.389555 CCCGACCTTTAGGAAATGGC 58.610 55.000 2.06 0.00 38.94 4.40
479 480 1.340600 CCCGACCTTTAGGAAATGGCA 60.341 52.381 2.06 0.00 38.94 4.92
480 481 2.442413 CCGACCTTTAGGAAATGGCAA 58.558 47.619 2.06 0.00 38.94 4.52
481 482 2.823154 CCGACCTTTAGGAAATGGCAAA 59.177 45.455 2.06 0.00 38.94 3.68
482 483 3.257127 CCGACCTTTAGGAAATGGCAAAA 59.743 43.478 2.06 0.00 38.94 2.44
483 484 4.262249 CCGACCTTTAGGAAATGGCAAAAA 60.262 41.667 2.06 0.00 38.94 1.94
484 485 4.684242 CGACCTTTAGGAAATGGCAAAAAC 59.316 41.667 2.06 0.00 38.94 2.43
485 486 4.627058 ACCTTTAGGAAATGGCAAAAACG 58.373 39.130 2.06 0.00 38.94 3.60
486 487 4.342665 ACCTTTAGGAAATGGCAAAAACGA 59.657 37.500 2.06 0.00 38.94 3.85
487 488 4.684242 CCTTTAGGAAATGGCAAAAACGAC 59.316 41.667 0.00 0.00 37.39 4.34
488 489 2.415697 AGGAAATGGCAAAAACGACG 57.584 45.000 0.00 0.00 0.00 5.12
489 490 1.000717 AGGAAATGGCAAAAACGACGG 60.001 47.619 0.00 0.00 0.00 4.79
490 491 1.414378 GAAATGGCAAAAACGACGGG 58.586 50.000 0.00 0.00 0.00 5.28
491 492 0.598942 AAATGGCAAAAACGACGGGC 60.599 50.000 0.00 0.00 0.00 6.13
492 493 2.428960 AATGGCAAAAACGACGGGCC 62.429 55.000 0.00 0.00 44.82 5.80
493 494 4.351938 GGCAAAAACGACGGGCCC 62.352 66.667 13.57 13.57 38.70 5.80
494 495 4.693525 GCAAAAACGACGGGCCCG 62.694 66.667 42.17 42.17 46.03 6.13
495 496 4.032987 CAAAAACGACGGGCCCGG 62.033 66.667 44.99 31.45 44.69 5.73
523 524 4.697756 CCCGGCCTTCGTGCTCAA 62.698 66.667 0.00 0.00 37.11 3.02
524 525 2.668212 CCGGCCTTCGTGCTCAAA 60.668 61.111 0.00 0.00 37.11 2.69
525 526 2.258013 CCGGCCTTCGTGCTCAAAA 61.258 57.895 0.00 0.00 37.11 2.44
526 527 1.652012 CGGCCTTCGTGCTCAAAAA 59.348 52.632 0.00 0.00 0.00 1.94
527 528 0.660300 CGGCCTTCGTGCTCAAAAAC 60.660 55.000 0.00 0.00 0.00 2.43
528 529 0.668535 GGCCTTCGTGCTCAAAAACT 59.331 50.000 0.00 0.00 0.00 2.66
529 530 1.877443 GGCCTTCGTGCTCAAAAACTA 59.123 47.619 0.00 0.00 0.00 2.24
530 531 2.095718 GGCCTTCGTGCTCAAAAACTAG 60.096 50.000 0.00 0.00 0.00 2.57
531 532 2.095718 GCCTTCGTGCTCAAAAACTAGG 60.096 50.000 0.00 0.00 0.00 3.02
532 533 2.095718 CCTTCGTGCTCAAAAACTAGGC 60.096 50.000 0.00 0.00 0.00 3.93
533 534 1.519408 TCGTGCTCAAAAACTAGGCC 58.481 50.000 0.00 0.00 0.00 5.19
534 535 0.521735 CGTGCTCAAAAACTAGGCCC 59.478 55.000 0.00 0.00 0.00 5.80
535 536 0.521735 GTGCTCAAAAACTAGGCCCG 59.478 55.000 0.00 0.00 0.00 6.13
536 537 0.398696 TGCTCAAAAACTAGGCCCGA 59.601 50.000 0.00 0.00 0.00 5.14
537 538 1.087501 GCTCAAAAACTAGGCCCGAG 58.912 55.000 0.00 0.00 0.00 4.63
538 539 1.087501 CTCAAAAACTAGGCCCGAGC 58.912 55.000 0.00 0.00 38.76 5.03
595 596 3.743017 GGCTTCCCATGGCCAGGA 61.743 66.667 21.32 15.01 46.84 3.86
596 597 2.440980 GCTTCCCATGGCCAGGAC 60.441 66.667 21.32 2.25 0.00 3.85
597 598 2.988839 GCTTCCCATGGCCAGGACT 61.989 63.158 21.32 0.00 0.00 3.85
598 599 1.635817 GCTTCCCATGGCCAGGACTA 61.636 60.000 21.32 1.89 0.00 2.59
599 600 1.143813 CTTCCCATGGCCAGGACTAT 58.856 55.000 21.32 0.00 0.00 2.12
600 601 1.496429 CTTCCCATGGCCAGGACTATT 59.504 52.381 21.32 0.00 0.00 1.73
601 602 1.140312 TCCCATGGCCAGGACTATTC 58.860 55.000 21.32 0.00 0.00 1.75
602 603 0.846015 CCCATGGCCAGGACTATTCA 59.154 55.000 21.32 0.00 0.00 2.57
603 604 1.426598 CCCATGGCCAGGACTATTCAT 59.573 52.381 21.32 0.00 0.00 2.57
604 605 2.511659 CCATGGCCAGGACTATTCATG 58.488 52.381 21.32 3.52 33.09 3.07
605 606 2.107031 CCATGGCCAGGACTATTCATGA 59.893 50.000 21.32 0.00 35.43 3.07
606 607 3.409570 CATGGCCAGGACTATTCATGAG 58.590 50.000 13.35 0.00 35.43 2.90
607 608 1.141657 TGGCCAGGACTATTCATGAGC 59.858 52.381 0.00 0.00 35.43 4.26
608 609 1.544314 GGCCAGGACTATTCATGAGCC 60.544 57.143 0.00 10.01 40.36 4.70
609 610 1.544314 GCCAGGACTATTCATGAGCCC 60.544 57.143 0.00 0.00 35.43 5.19
610 611 1.770658 CCAGGACTATTCATGAGCCCA 59.229 52.381 0.00 0.00 35.43 5.36
611 612 2.486191 CCAGGACTATTCATGAGCCCAC 60.486 54.545 0.00 0.00 35.43 4.61
612 613 1.414181 AGGACTATTCATGAGCCCACG 59.586 52.381 0.00 0.00 0.00 4.94
613 614 1.412710 GGACTATTCATGAGCCCACGA 59.587 52.381 0.00 0.00 0.00 4.35
614 615 2.546795 GGACTATTCATGAGCCCACGAG 60.547 54.545 0.00 0.00 0.00 4.18
615 616 1.414181 ACTATTCATGAGCCCACGAGG 59.586 52.381 0.00 0.00 39.47 4.63
616 617 1.414181 CTATTCATGAGCCCACGAGGT 59.586 52.381 0.00 0.00 38.26 3.85
617 618 0.179000 ATTCATGAGCCCACGAGGTC 59.821 55.000 0.00 0.00 38.26 3.85
618 619 2.202797 CATGAGCCCACGAGGTCG 60.203 66.667 0.00 0.00 46.33 4.79
619 620 4.148825 ATGAGCCCACGAGGTCGC 62.149 66.667 0.00 0.00 44.43 5.19
621 622 4.500116 GAGCCCACGAGGTCGCTC 62.500 72.222 12.74 12.74 44.43 5.03
623 624 4.500116 GCCCACGAGGTCGCTCTC 62.500 72.222 0.00 0.00 44.43 3.20
706 707 3.592814 CCCGCTCGCCATAGTCGA 61.593 66.667 0.00 0.00 34.52 4.20
713 714 2.365068 CGCCATAGTCGATTCCGCG 61.365 63.158 0.00 0.00 35.37 6.46
758 759 0.599060 GCTCGTCTCCTATAGCACCC 59.401 60.000 0.00 0.00 35.05 4.61
760 761 1.170919 TCGTCTCCTATAGCACCCGC 61.171 60.000 0.00 0.00 38.99 6.13
761 762 1.452953 CGTCTCCTATAGCACCCGCA 61.453 60.000 0.00 0.00 42.27 5.69
762 763 0.315568 GTCTCCTATAGCACCCGCAG 59.684 60.000 0.00 0.00 42.27 5.18
807 815 3.839432 CTCTTCCCCGCCTCCGAC 61.839 72.222 0.00 0.00 36.29 4.79
818 826 4.592936 CTCCGACGCGCCGAGTAG 62.593 72.222 18.64 6.90 0.00 2.57
821 829 3.950254 CGACGCGCCGAGTAGGAT 61.950 66.667 9.96 0.00 45.00 3.24
822 830 2.601398 CGACGCGCCGAGTAGGATA 61.601 63.158 9.96 0.00 45.00 2.59
823 831 1.082235 GACGCGCCGAGTAGGATAC 60.082 63.158 5.73 0.00 45.00 2.24
952 995 1.475034 CCGATTCGATCCACATTGGGT 60.475 52.381 7.83 0.00 38.32 4.51
975 1019 0.629058 TGCCAACTAATTCCTCCCCC 59.371 55.000 0.00 0.00 0.00 5.40
976 1020 0.927029 GCCAACTAATTCCTCCCCCT 59.073 55.000 0.00 0.00 0.00 4.79
977 1021 1.133761 GCCAACTAATTCCTCCCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
978 1022 2.493091 CCAACTAATTCCTCCCCCTCT 58.507 52.381 0.00 0.00 0.00 3.69
980 1024 3.117851 CCAACTAATTCCTCCCCCTCTTC 60.118 52.174 0.00 0.00 0.00 2.87
982 1026 1.694696 CTAATTCCTCCCCCTCTTCCG 59.305 57.143 0.00 0.00 0.00 4.30
983 1027 1.636769 AATTCCTCCCCCTCTTCCGC 61.637 60.000 0.00 0.00 0.00 5.54
1066 1111 2.624868 TACGACTACGGCGCCAACA 61.625 57.895 28.98 9.52 44.46 3.33
1440 1506 4.003788 CCCCTCGACGTGCTTGGT 62.004 66.667 0.00 0.00 0.00 3.67
1484 1550 2.654802 TCCTCAAGGACGACAGGAC 58.345 57.895 0.00 0.00 39.78 3.85
1509 1575 4.471747 AGGAACCCTGATAAGAAGAAGGTC 59.528 45.833 0.00 0.00 29.57 3.85
1597 1675 1.813753 ACGGATTTCCATGACGCCG 60.814 57.895 0.00 0.00 43.95 6.46
1598 1676 1.813753 CGGATTTCCATGACGCCGT 60.814 57.895 0.00 0.00 34.45 5.68
1599 1677 1.762222 CGGATTTCCATGACGCCGTC 61.762 60.000 10.96 10.96 34.45 4.79
1622 1700 3.832237 CTGCCGGTGTGCCTTCTGT 62.832 63.158 1.90 0.00 0.00 3.41
1844 1940 4.338379 TGAGCTGGATGATGAGAATGAG 57.662 45.455 0.00 0.00 0.00 2.90
1851 1947 4.906060 TGGATGATGAGAATGAGGATGACT 59.094 41.667 0.00 0.00 0.00 3.41
1887 1983 3.071479 GTTCCTGGAACTATGCAAACGA 58.929 45.455 28.07 0.00 39.23 3.85
1933 2029 1.073897 AGAGCTGCAACAAGGGTCC 59.926 57.895 1.02 0.00 0.00 4.46
2014 2110 1.140852 TGAAGATATTGACCCCCAGCG 59.859 52.381 0.00 0.00 0.00 5.18
2379 2475 2.447408 TGGTGCGAGGGATAGTAAGA 57.553 50.000 0.00 0.00 0.00 2.10
2405 2507 7.233348 ACAGTTGATATCAAAAGTGGATGGTTT 59.767 33.333 19.55 0.00 37.63 3.27
2571 2673 4.256920 GCGACCTATGCCATATGAATCTT 58.743 43.478 3.65 0.00 0.00 2.40
2651 2753 6.878317 TGGGATGACTCAACTTAATAGAGTG 58.122 40.000 8.72 0.00 42.29 3.51
2759 2861 4.557296 GCTGTGCTTACAATTCTTCAGCAA 60.557 41.667 0.00 0.00 42.00 3.91
2784 2886 5.122707 TGGTTTGCATATGAAGGATGGTA 57.877 39.130 6.97 0.00 0.00 3.25
3096 3198 5.641209 CCTGTTCTGGAGAGTATTGTTTCTG 59.359 44.000 0.00 0.00 0.00 3.02
3200 3302 1.065358 CGGTATTCTTGCGTGTTCGT 58.935 50.000 0.00 0.00 39.49 3.85
3203 3305 2.471749 GGTATTCTTGCGTGTTCGTTCG 60.472 50.000 0.00 0.00 39.49 3.95
3557 3659 3.378339 GTTTGCTATTCATCATGCTGGC 58.622 45.455 0.00 0.00 0.00 4.85
3635 3737 2.354805 GGTCCTTATTTCGACAGCCACT 60.355 50.000 0.00 0.00 0.00 4.00
3711 3813 6.709846 CCAAATTTACAATTCAGAAAAGGGCA 59.290 34.615 0.00 0.00 0.00 5.36
3739 3841 3.265791 CAGAACTAAGTCCACTGGATGC 58.734 50.000 0.00 0.00 32.73 3.91
3832 3934 4.096382 CCACAGTGAATTGCAATACTACCC 59.904 45.833 13.39 0.00 0.00 3.69
3834 3936 3.312421 CAGTGAATTGCAATACTACCCGG 59.688 47.826 13.39 0.00 0.00 5.73
3854 3956 3.624861 CGGCTCTTATGAATCAACAGCTT 59.375 43.478 0.00 0.00 0.00 3.74
3921 4023 3.318839 TGCAGAGATTGTTTTGGGAACTG 59.681 43.478 0.00 0.00 0.00 3.16
4164 4278 5.745294 GTGTTGGCTATTGTGCTTGAATATG 59.255 40.000 0.00 0.00 0.00 1.78
4175 4289 7.230849 TGTGCTTGAATATGTCCTCAAATTT 57.769 32.000 0.00 0.00 31.41 1.82
4245 4360 3.310774 CGAATATGTTTGTGGCCTCTCTG 59.689 47.826 3.32 0.00 0.00 3.35
4258 4373 2.364002 GCCTCTCTGAATCCTAGTGTCC 59.636 54.545 0.00 0.00 0.00 4.02
4371 4889 2.357517 CAAGTCGTCCTTGCGCCT 60.358 61.111 4.18 0.00 43.84 5.52
4378 4896 1.635663 CGTCCTTGCGCCTTTACAGG 61.636 60.000 4.18 0.40 44.28 4.00
4466 5070 6.183360 GCATCATAGTAAAAGGTACTCCCTCA 60.183 42.308 0.00 0.00 45.47 3.86
4467 5071 7.437748 CATCATAGTAAAAGGTACTCCCTCAG 58.562 42.308 0.00 0.00 45.47 3.35
4469 5073 6.606395 TCATAGTAAAAGGTACTCCCTCAGTC 59.394 42.308 0.00 0.00 45.47 3.51
4471 5075 1.954035 AAAGGTACTCCCTCAGTCCC 58.046 55.000 0.00 0.00 45.47 4.46
4472 5076 0.790993 AAGGTACTCCCTCAGTCCCA 59.209 55.000 0.00 0.00 45.47 4.37
4475 5079 2.590611 AGGTACTCCCTCAGTCCCATAA 59.409 50.000 0.00 0.00 40.71 1.90
4476 5080 3.210074 AGGTACTCCCTCAGTCCCATAAT 59.790 47.826 0.00 0.00 40.71 1.28
4477 5081 3.325135 GGTACTCCCTCAGTCCCATAATG 59.675 52.174 0.00 0.00 36.43 1.90
4482 5086 4.890988 TCCCTCAGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
4483 5087 4.654262 TCCCTCAGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
4489 5093 6.938030 TCAGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 32.70 1.94
4529 5195 7.817962 AGTGTAGTGTCAAAAAGCGTCTTATAT 59.182 33.333 0.00 0.00 0.00 0.86
4534 5200 9.378551 AGTGTCAAAAAGCGTCTTATATTATGA 57.621 29.630 0.00 0.00 0.00 2.15
4535 5201 9.638300 GTGTCAAAAAGCGTCTTATATTATGAG 57.362 33.333 0.00 0.00 0.00 2.90
4538 5204 9.594478 TCAAAAAGCGTCTTATATTATGAGACA 57.406 29.630 21.66 4.13 43.73 3.41
4546 5212 7.392113 CGTCTTATATTATGAGACAGAGGGAGT 59.608 40.741 21.66 0.00 43.73 3.85
4547 5213 9.742144 GTCTTATATTATGAGACAGAGGGAGTA 57.258 37.037 18.72 0.00 43.22 2.59
4548 5214 9.742144 TCTTATATTATGAGACAGAGGGAGTAC 57.258 37.037 0.00 0.00 0.00 2.73
4549 5215 9.521841 CTTATATTATGAGACAGAGGGAGTACA 57.478 37.037 0.00 0.00 0.00 2.90
4600 5266 2.877043 CAAAAAGTGCCTCTGCTTGT 57.123 45.000 0.00 0.00 38.71 3.16
4601 5267 3.988379 CAAAAAGTGCCTCTGCTTGTA 57.012 42.857 0.00 0.00 38.71 2.41
4612 5278 5.514453 GCCTCTGCTTGTATGGGTTCATAC 61.514 50.000 8.97 8.97 43.52 2.39
4642 5308 2.232452 GCTGTCTCTTTGGAGCAGAGTA 59.768 50.000 15.79 0.00 41.60 2.59
4648 5314 4.774726 TCTCTTTGGAGCAGAGTATTGTCT 59.225 41.667 0.00 0.00 39.18 3.41
4672 5338 6.114089 TCTAGAAGTGTTCGTAGAGTAGCAT 58.886 40.000 0.00 0.00 38.43 3.79
4680 5346 7.028361 GTGTTCGTAGAGTAGCATAGAAACTT 58.972 38.462 0.00 0.00 38.43 2.66
4752 5419 7.959175 TGTAGGGAAGTGTTACATCCATATAC 58.041 38.462 7.23 7.11 37.70 1.47
4820 5521 6.163135 CTCCTAGGAGGGTTGTAACATAAG 57.837 45.833 28.68 0.01 38.51 1.73
4822 5523 3.646736 AGGAGGGTTGTAACATAAGCC 57.353 47.619 0.00 0.00 44.06 4.35
4830 5531 6.069029 AGGGTTGTAACATAAGCCCTATCTTT 60.069 38.462 0.00 0.00 44.00 2.52
4844 5545 8.650143 AGCCCTATCTTTTCAATACAAAGAAA 57.350 30.769 0.00 0.00 42.23 2.52
4846 5547 7.484959 GCCCTATCTTTTCAATACAAAGAAACG 59.515 37.037 0.00 0.00 42.23 3.60
4862 5563 3.565482 AGAAACGCAAGAATCTCTTTGCA 59.435 39.130 9.50 0.00 33.78 4.08
4870 5571 5.285607 GCAAGAATCTCTTTGCATTTTCTCG 59.714 40.000 4.48 0.00 33.78 4.04
4874 5575 6.313411 AGAATCTCTTTGCATTTTCTCGAGAG 59.687 38.462 15.94 5.09 30.60 3.20
5306 6007 3.116977 TCTCTCCCTTGGCTCTGATATGA 60.117 47.826 0.00 0.00 0.00 2.15
5334 6035 3.492337 TCAAACAGGTAACATGTTCCCC 58.508 45.455 15.85 15.93 39.91 4.81
5379 6090 9.962759 GATTTGAATTGCTTGCTTATTTAGTTG 57.037 29.630 0.00 0.00 0.00 3.16
5720 6433 6.183360 CCAGTTACCAAAGTTGAACCTTTCAT 60.183 38.462 0.00 0.00 39.84 2.57
5773 6486 3.391296 TGGGTTTTGAGCTGACTCTAACT 59.609 43.478 0.00 0.00 43.85 2.24
5959 6672 0.250513 CACTGCCCCCTCTGTACTTC 59.749 60.000 0.00 0.00 0.00 3.01
6046 6759 2.029918 GGTTCTTCCAGACAAACATGCC 60.030 50.000 0.00 0.00 35.97 4.40
6244 6957 1.093972 CCATATGTGCGGAGTTTGCA 58.906 50.000 1.24 0.00 40.70 4.08
6264 6977 6.509418 TGCAATACTAAGGAACCATCAAAC 57.491 37.500 0.00 0.00 0.00 2.93
6275 6988 4.439057 GAACCATCAAACGGCAGTATCTA 58.561 43.478 0.00 0.00 0.00 1.98
6958 7671 5.596361 TCTTGGGTCAGAAGATGAGATAGAC 59.404 44.000 0.00 0.00 39.07 2.59
6964 7677 6.205853 GGTCAGAAGATGAGATAGACACGTAT 59.794 42.308 0.00 0.00 39.07 3.06
7096 7809 1.168714 GTGGGAAGATCCAAGTGTGC 58.831 55.000 0.00 0.00 38.64 4.57
7302 8218 1.009829 GCACCTCGCAAGGAATACTG 58.990 55.000 0.00 0.00 46.67 2.74
7345 8261 2.550277 TCCCTGTTGAGAGCCATCTA 57.450 50.000 0.00 0.00 35.30 1.98
7396 8312 3.906998 TGAAGTTGTTTGTGGTGTTGTG 58.093 40.909 0.00 0.00 0.00 3.33
7591 8507 7.611079 GTGGTTATAGAGGAGGATACGTATCTT 59.389 40.741 29.40 24.66 46.39 2.40
7674 8590 3.063452 CGGTTCAGTTCAATGATAACCCG 59.937 47.826 9.96 0.00 29.66 5.28
7715 8631 4.649218 GTCTCCTGGAGATTCTAGCTTCTT 59.351 45.833 27.96 0.00 40.98 2.52
7841 8757 4.936823 ACGTCAAGGCGAACGCGT 62.937 61.111 5.58 5.58 43.06 6.01
7872 8788 0.179189 CATTTCTCGAGGCAAACGGC 60.179 55.000 13.56 0.00 43.74 5.68
7877 8793 0.669318 CTCGAGGCAAACGGCTGTAA 60.669 55.000 3.91 0.00 44.01 2.41
8192 9117 3.430218 GCTTAAGGACATCATCGGATTCG 59.570 47.826 4.29 0.00 37.82 3.34
8299 9224 2.437413 ACTCTAGAGCGTGACATGACA 58.563 47.619 19.97 0.00 0.00 3.58
8458 9386 1.808945 CGCCTGAAGCTTGAGTTCATT 59.191 47.619 12.14 0.00 40.39 2.57
8560 9488 2.218953 TCACTGTGAACGTGAAGGAC 57.781 50.000 8.27 0.00 38.36 3.85
8683 9611 2.371841 TCAGTACTTGCACCACCAGATT 59.628 45.455 0.00 0.00 0.00 2.40
8728 9656 2.441750 TGCTTCTTGGTCTGTTAGGGTT 59.558 45.455 0.00 0.00 0.00 4.11
8729 9657 3.117663 TGCTTCTTGGTCTGTTAGGGTTT 60.118 43.478 0.00 0.00 0.00 3.27
8881 9809 5.978919 GCAATGTATGTGTTTGATACATGGG 59.021 40.000 0.00 0.00 43.26 4.00
8893 9821 0.904649 TACATGGGGTCTGCACTCTG 59.095 55.000 0.00 0.00 0.00 3.35
8950 9878 1.529865 GGCCTCGCGAATTGTATAACC 59.470 52.381 11.33 0.00 0.00 2.85
8952 9880 2.033151 GCCTCGCGAATTGTATAACCAC 60.033 50.000 11.33 0.00 0.00 4.16
8955 9883 1.332552 CGCGAATTGTATAACCACGGC 60.333 52.381 0.00 0.00 0.00 5.68
8963 9891 1.929169 GTATAACCACGGCCTTCGAAC 59.071 52.381 0.00 0.00 42.43 3.95
8970 9898 2.372690 CGGCCTTCGAACAGTGTCG 61.373 63.158 0.00 2.38 42.43 4.35
8983 9911 2.872245 ACAGTGTCGAAACTTGTCCATG 59.128 45.455 5.21 0.00 0.00 3.66
8990 9918 2.159627 CGAAACTTGTCCATGTGCTACC 59.840 50.000 0.00 0.00 0.00 3.18
9077 10006 6.458232 AGTGATGAGCTACTAGTTAAGTGG 57.542 41.667 0.00 0.00 39.39 4.00
9091 10020 5.048507 AGTTAAGTGGTCGACTGTTTCTTC 58.951 41.667 16.46 0.00 34.02 2.87
9096 10025 4.120589 GTGGTCGACTGTTTCTTCTTTCT 58.879 43.478 16.46 0.00 0.00 2.52
9101 10030 6.414890 GTCGACTGTTTCTTCTTTCTGAAAG 58.585 40.000 21.29 21.29 39.88 2.62
9201 10131 2.365617 GTCAGGTCAACAGTCAAGAGGA 59.634 50.000 0.00 0.00 0.00 3.71
9265 10195 8.460428 AGTATCGACTCTGGTAAGTTTTTCTAG 58.540 37.037 0.00 0.00 0.00 2.43
9315 10249 6.849085 TGGCACATTATGTCAAAGGTTAAT 57.151 33.333 0.00 0.00 40.98 1.40
9334 10268 6.183360 GGTTAATTCGATGCAATGGGAAAAAC 60.183 38.462 0.00 2.25 0.00 2.43
9365 10300 9.220767 ACTATCAAAATCTACTGAAACTGGAAC 57.779 33.333 0.00 0.00 0.00 3.62
9406 10341 5.518848 TGCACAACTGAATCTTGTCAATT 57.481 34.783 0.00 0.00 29.02 2.32
9453 10388 1.822990 AGCTGAATTTGTGCAGGGATG 59.177 47.619 0.00 0.00 32.83 3.51
9513 10455 6.908825 TGTTTCATTGTTGCTAGAATACACC 58.091 36.000 0.00 0.00 0.00 4.16
9528 10470 9.307121 CTAGAATACACCACTATCTGTCTTTTG 57.693 37.037 0.00 0.00 0.00 2.44
9545 10487 9.552114 CTGTCTTTTGTAGAATGTTTGATGATC 57.448 33.333 0.00 0.00 33.81 2.92
9554 10496 5.236047 AGAATGTTTGATGATCGCTAGAAGC 59.764 40.000 0.00 0.00 38.02 3.86
9558 10500 2.042464 TGATGATCGCTAGAAGCCCTT 58.958 47.619 0.00 0.00 38.18 3.95
9561 10503 1.683917 TGATCGCTAGAAGCCCTTCTC 59.316 52.381 13.42 0.97 46.13 2.87
9562 10504 1.000394 GATCGCTAGAAGCCCTTCTCC 60.000 57.143 13.42 6.27 46.13 3.71
9563 10505 0.324368 TCGCTAGAAGCCCTTCTCCA 60.324 55.000 13.42 0.00 46.13 3.86
9567 10509 3.625853 GCTAGAAGCCCTTCTCCATTTT 58.374 45.455 13.42 0.00 46.13 1.82
9568 10510 4.019858 GCTAGAAGCCCTTCTCCATTTTT 58.980 43.478 13.42 0.00 46.13 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.532317 GTGAGAGCTTACGCGAAGATTC 59.468 50.000 15.93 12.76 42.32 2.52
57 58 2.531206 GTGAGAGCTTACGCGAAGATT 58.469 47.619 15.93 4.42 42.32 2.40
58 59 1.532090 CGTGAGAGCTTACGCGAAGAT 60.532 52.381 15.93 11.20 41.53 2.40
59 60 0.179197 CGTGAGAGCTTACGCGAAGA 60.179 55.000 15.93 0.00 41.53 2.87
60 61 0.179197 TCGTGAGAGCTTACGCGAAG 60.179 55.000 15.93 13.47 43.96 3.79
61 62 1.871077 TCGTGAGAGCTTACGCGAA 59.129 52.632 15.93 1.35 43.96 4.70
62 63 0.450583 ATTCGTGAGAGCTTACGCGA 59.549 50.000 15.93 19.97 44.93 5.87
63 64 2.101053 TATTCGTGAGAGCTTACGCG 57.899 50.000 3.53 3.53 41.50 6.01
64 65 4.974275 TGTTATATTCGTGAGAGCTTACGC 59.026 41.667 9.58 4.82 41.50 4.42
65 66 7.167635 ACAATGTTATATTCGTGAGAGCTTACG 59.832 37.037 8.31 8.31 43.69 3.18
66 67 8.354011 ACAATGTTATATTCGTGAGAGCTTAC 57.646 34.615 0.00 0.00 43.69 2.34
67 68 7.652105 GGACAATGTTATATTCGTGAGAGCTTA 59.348 37.037 0.00 0.00 43.69 3.09
68 69 6.480320 GGACAATGTTATATTCGTGAGAGCTT 59.520 38.462 0.00 0.00 43.69 3.74
69 70 5.986135 GGACAATGTTATATTCGTGAGAGCT 59.014 40.000 0.00 0.00 43.69 4.09
70 71 5.107837 CGGACAATGTTATATTCGTGAGAGC 60.108 44.000 0.00 0.00 43.69 4.09
71 72 6.206498 TCGGACAATGTTATATTCGTGAGAG 58.794 40.000 0.00 0.00 43.69 3.20
72 73 6.038936 TCTCGGACAATGTTATATTCGTGAGA 59.961 38.462 0.00 0.00 39.20 3.27
73 74 6.142480 GTCTCGGACAATGTTATATTCGTGAG 59.858 42.308 0.00 0.00 32.09 3.51
74 75 5.975344 GTCTCGGACAATGTTATATTCGTGA 59.025 40.000 0.00 0.00 32.09 4.35
75 76 5.977725 AGTCTCGGACAATGTTATATTCGTG 59.022 40.000 6.78 0.00 34.60 4.35
76 77 6.145338 AGTCTCGGACAATGTTATATTCGT 57.855 37.500 6.78 0.00 34.60 3.85
77 78 7.361127 ACTAGTCTCGGACAATGTTATATTCG 58.639 38.462 6.78 0.00 34.60 3.34
78 79 8.569641 AGACTAGTCTCGGACAATGTTATATTC 58.430 37.037 20.00 0.00 34.17 1.75
79 80 8.466617 AGACTAGTCTCGGACAATGTTATATT 57.533 34.615 20.00 0.00 34.17 1.28
80 81 8.466617 AAGACTAGTCTCGGACAATGTTATAT 57.533 34.615 25.34 1.35 39.39 0.86
81 82 7.876936 AAGACTAGTCTCGGACAATGTTATA 57.123 36.000 25.34 0.00 39.39 0.98
82 83 6.777213 AAGACTAGTCTCGGACAATGTTAT 57.223 37.500 25.34 2.47 39.39 1.89
83 84 6.883217 ACTAAGACTAGTCTCGGACAATGTTA 59.117 38.462 25.34 9.25 39.39 2.41
84 85 5.711036 ACTAAGACTAGTCTCGGACAATGTT 59.289 40.000 25.34 8.57 39.39 2.71
85 86 5.254901 ACTAAGACTAGTCTCGGACAATGT 58.745 41.667 25.34 9.29 39.39 2.71
86 87 5.821516 ACTAAGACTAGTCTCGGACAATG 57.178 43.478 25.34 11.43 39.39 2.82
104 105 7.759886 CAGGATTGTCAAATCTTAGTCGACTAA 59.240 37.037 30.65 30.65 41.74 2.24
105 106 7.093902 ACAGGATTGTCAAATCTTAGTCGACTA 60.094 37.037 21.25 21.25 41.74 2.59
106 107 6.102663 CAGGATTGTCAAATCTTAGTCGACT 58.897 40.000 23.66 23.66 41.74 4.18
107 108 5.869888 ACAGGATTGTCAAATCTTAGTCGAC 59.130 40.000 7.70 7.70 41.74 4.20
108 109 6.037786 ACAGGATTGTCAAATCTTAGTCGA 57.962 37.500 0.00 0.00 41.74 4.20
109 110 6.727824 AACAGGATTGTCAAATCTTAGTCG 57.272 37.500 0.00 0.00 41.74 4.18
132 133 9.640963 CCACCGGTTCATATATTTTTACAAAAA 57.359 29.630 2.97 2.57 41.59 1.94
133 134 9.021807 TCCACCGGTTCATATATTTTTACAAAA 57.978 29.630 2.97 0.00 0.00 2.44
134 135 8.577048 TCCACCGGTTCATATATTTTTACAAA 57.423 30.769 2.97 0.00 0.00 2.83
135 136 8.577048 TTCCACCGGTTCATATATTTTTACAA 57.423 30.769 2.97 0.00 0.00 2.41
136 137 8.460428 GTTTCCACCGGTTCATATATTTTTACA 58.540 33.333 2.97 0.00 0.00 2.41
137 138 7.916977 GGTTTCCACCGGTTCATATATTTTTAC 59.083 37.037 2.97 0.00 31.60 2.01
138 139 7.998580 GGTTTCCACCGGTTCATATATTTTTA 58.001 34.615 2.97 0.00 31.60 1.52
139 140 6.869695 GGTTTCCACCGGTTCATATATTTTT 58.130 36.000 2.97 0.00 31.60 1.94
140 141 6.459670 GGTTTCCACCGGTTCATATATTTT 57.540 37.500 2.97 0.00 31.60 1.82
167 168 5.587043 TCCTGACGTGCTTTCTTTAGAAAAA 59.413 36.000 0.00 0.00 42.72 1.94
168 169 5.120399 TCCTGACGTGCTTTCTTTAGAAAA 58.880 37.500 0.00 0.00 42.72 2.29
169 170 4.699637 TCCTGACGTGCTTTCTTTAGAAA 58.300 39.130 0.00 4.95 41.29 2.52
170 171 4.330944 TCCTGACGTGCTTTCTTTAGAA 57.669 40.909 0.00 0.00 0.00 2.10
171 172 4.330944 TTCCTGACGTGCTTTCTTTAGA 57.669 40.909 0.00 0.00 0.00 2.10
172 173 5.236478 TCTTTTCCTGACGTGCTTTCTTTAG 59.764 40.000 0.00 0.00 0.00 1.85
173 174 5.120399 TCTTTTCCTGACGTGCTTTCTTTA 58.880 37.500 0.00 0.00 0.00 1.85
174 175 3.945285 TCTTTTCCTGACGTGCTTTCTTT 59.055 39.130 0.00 0.00 0.00 2.52
175 176 3.541632 TCTTTTCCTGACGTGCTTTCTT 58.458 40.909 0.00 0.00 0.00 2.52
176 177 3.194005 TCTTTTCCTGACGTGCTTTCT 57.806 42.857 0.00 0.00 0.00 2.52
177 178 3.963383 TTCTTTTCCTGACGTGCTTTC 57.037 42.857 0.00 0.00 0.00 2.62
178 179 4.455877 CCTATTCTTTTCCTGACGTGCTTT 59.544 41.667 0.00 0.00 0.00 3.51
179 180 4.003648 CCTATTCTTTTCCTGACGTGCTT 58.996 43.478 0.00 0.00 0.00 3.91
180 181 3.600388 CCTATTCTTTTCCTGACGTGCT 58.400 45.455 0.00 0.00 0.00 4.40
181 182 2.678336 CCCTATTCTTTTCCTGACGTGC 59.322 50.000 0.00 0.00 0.00 5.34
182 183 3.055385 TCCCCTATTCTTTTCCTGACGTG 60.055 47.826 0.00 0.00 0.00 4.49
183 184 3.178865 TCCCCTATTCTTTTCCTGACGT 58.821 45.455 0.00 0.00 0.00 4.34
184 185 3.906720 TCCCCTATTCTTTTCCTGACG 57.093 47.619 0.00 0.00 0.00 4.35
185 186 4.395231 CGTTTCCCCTATTCTTTTCCTGAC 59.605 45.833 0.00 0.00 0.00 3.51
186 187 4.566907 CCGTTTCCCCTATTCTTTTCCTGA 60.567 45.833 0.00 0.00 0.00 3.86
187 188 3.694566 CCGTTTCCCCTATTCTTTTCCTG 59.305 47.826 0.00 0.00 0.00 3.86
188 189 3.308904 CCCGTTTCCCCTATTCTTTTCCT 60.309 47.826 0.00 0.00 0.00 3.36
189 190 3.021695 CCCGTTTCCCCTATTCTTTTCC 58.978 50.000 0.00 0.00 0.00 3.13
190 191 2.426024 GCCCGTTTCCCCTATTCTTTTC 59.574 50.000 0.00 0.00 0.00 2.29
191 192 2.042569 AGCCCGTTTCCCCTATTCTTTT 59.957 45.455 0.00 0.00 0.00 2.27
192 193 1.639108 AGCCCGTTTCCCCTATTCTTT 59.361 47.619 0.00 0.00 0.00 2.52
193 194 1.064685 CAGCCCGTTTCCCCTATTCTT 60.065 52.381 0.00 0.00 0.00 2.52
194 195 0.546598 CAGCCCGTTTCCCCTATTCT 59.453 55.000 0.00 0.00 0.00 2.40
195 196 0.465642 CCAGCCCGTTTCCCCTATTC 60.466 60.000 0.00 0.00 0.00 1.75
196 197 1.613061 CCAGCCCGTTTCCCCTATT 59.387 57.895 0.00 0.00 0.00 1.73
197 198 3.056754 GCCAGCCCGTTTCCCCTAT 62.057 63.158 0.00 0.00 0.00 2.57
198 199 3.723922 GCCAGCCCGTTTCCCCTA 61.724 66.667 0.00 0.00 0.00 3.53
201 202 4.759205 ATGGCCAGCCCGTTTCCC 62.759 66.667 13.05 0.00 35.87 3.97
202 203 3.140814 GATGGCCAGCCCGTTTCC 61.141 66.667 10.76 0.00 35.87 3.13
203 204 2.361104 TGATGGCCAGCCCGTTTC 60.361 61.111 20.33 5.86 35.87 2.78
204 205 2.676471 GTGATGGCCAGCCCGTTT 60.676 61.111 20.33 0.00 35.87 3.60
205 206 4.740822 GGTGATGGCCAGCCCGTT 62.741 66.667 20.33 0.00 37.30 4.44
209 210 2.813226 TTACACGGTGATGGCCAGCC 62.813 60.000 20.33 15.64 40.02 4.85
210 211 0.958382 TTTACACGGTGATGGCCAGC 60.958 55.000 15.83 15.83 39.77 4.85
211 212 1.401552 CATTTACACGGTGATGGCCAG 59.598 52.381 16.29 0.00 0.00 4.85
212 213 1.458398 CATTTACACGGTGATGGCCA 58.542 50.000 16.29 8.56 0.00 5.36
213 214 0.738389 CCATTTACACGGTGATGGCC 59.262 55.000 16.29 0.00 33.34 5.36
214 215 0.738389 CCCATTTACACGGTGATGGC 59.262 55.000 16.29 0.00 38.14 4.40
215 216 0.738389 GCCCATTTACACGGTGATGG 59.262 55.000 16.29 16.40 38.98 3.51
216 217 0.738389 GGCCCATTTACACGGTGATG 59.262 55.000 16.29 8.15 0.00 3.07
217 218 0.623723 AGGCCCATTTACACGGTGAT 59.376 50.000 16.29 1.80 0.00 3.06
218 219 0.035820 GAGGCCCATTTACACGGTGA 60.036 55.000 16.29 0.00 0.00 4.02
219 220 0.035439 AGAGGCCCATTTACACGGTG 60.035 55.000 6.58 6.58 0.00 4.94
220 221 0.035439 CAGAGGCCCATTTACACGGT 60.035 55.000 0.00 0.00 0.00 4.83
221 222 1.376609 GCAGAGGCCCATTTACACGG 61.377 60.000 0.00 0.00 0.00 4.94
222 223 0.392998 AGCAGAGGCCCATTTACACG 60.393 55.000 0.00 0.00 42.56 4.49
223 224 1.745653 GAAGCAGAGGCCCATTTACAC 59.254 52.381 0.00 0.00 42.56 2.90
224 225 1.635487 AGAAGCAGAGGCCCATTTACA 59.365 47.619 0.00 0.00 42.56 2.41
225 226 2.293170 GAGAAGCAGAGGCCCATTTAC 58.707 52.381 0.00 0.00 42.56 2.01
226 227 1.915489 TGAGAAGCAGAGGCCCATTTA 59.085 47.619 0.00 0.00 42.56 1.40
227 228 0.700564 TGAGAAGCAGAGGCCCATTT 59.299 50.000 0.00 0.00 42.56 2.32
228 229 2.391226 TGAGAAGCAGAGGCCCATT 58.609 52.632 0.00 0.00 42.56 3.16
229 230 4.159099 TGAGAAGCAGAGGCCCAT 57.841 55.556 0.00 0.00 42.56 4.00
238 239 1.349026 AGCCTAACAAGCTGAGAAGCA 59.651 47.619 0.00 0.00 39.69 3.91
239 240 2.106477 AGCCTAACAAGCTGAGAAGC 57.894 50.000 0.00 0.00 39.69 3.86
240 241 3.190118 CCAAAGCCTAACAAGCTGAGAAG 59.810 47.826 0.00 0.00 40.49 2.85
241 242 3.149196 CCAAAGCCTAACAAGCTGAGAA 58.851 45.455 0.00 0.00 40.49 2.87
242 243 2.371841 TCCAAAGCCTAACAAGCTGAGA 59.628 45.455 0.00 0.00 40.49 3.27
243 244 2.783135 TCCAAAGCCTAACAAGCTGAG 58.217 47.619 0.00 0.00 40.49 3.35
244 245 2.949177 TCCAAAGCCTAACAAGCTGA 57.051 45.000 0.00 0.00 40.49 4.26
245 246 2.165030 CCATCCAAAGCCTAACAAGCTG 59.835 50.000 0.00 0.00 40.49 4.24
246 247 2.450476 CCATCCAAAGCCTAACAAGCT 58.550 47.619 0.00 0.00 44.19 3.74
247 248 1.134995 GCCATCCAAAGCCTAACAAGC 60.135 52.381 0.00 0.00 0.00 4.01
248 249 1.478105 GGCCATCCAAAGCCTAACAAG 59.522 52.381 0.00 0.00 46.14 3.16
249 250 1.555967 GGCCATCCAAAGCCTAACAA 58.444 50.000 0.00 0.00 46.14 2.83
250 251 3.281332 GGCCATCCAAAGCCTAACA 57.719 52.632 0.00 0.00 46.14 2.41
256 257 3.464494 GGGCAGGCCATCCAAAGC 61.464 66.667 13.10 0.00 37.98 3.51
257 258 3.142838 CGGGCAGGCCATCCAAAG 61.143 66.667 14.59 0.00 37.98 2.77
258 259 3.978193 ACGGGCAGGCCATCCAAA 61.978 61.111 14.59 0.00 37.98 3.28
259 260 4.738998 CACGGGCAGGCCATCCAA 62.739 66.667 14.59 0.00 37.98 3.53
261 262 3.936772 TTTCACGGGCAGGCCATCC 62.937 63.158 14.59 4.89 37.98 3.51
262 263 2.361104 TTTCACGGGCAGGCCATC 60.361 61.111 14.59 0.00 37.98 3.51
263 264 2.361610 CTTTCACGGGCAGGCCAT 60.362 61.111 14.59 0.00 37.98 4.40
264 265 3.884774 ACTTTCACGGGCAGGCCA 61.885 61.111 14.59 0.00 37.98 5.36
265 266 3.365265 CACTTTCACGGGCAGGCC 61.365 66.667 1.81 1.81 0.00 5.19
266 267 2.594592 ACACTTTCACGGGCAGGC 60.595 61.111 0.00 0.00 0.00 4.85
267 268 0.817634 TTCACACTTTCACGGGCAGG 60.818 55.000 0.00 0.00 0.00 4.85
268 269 0.588252 CTTCACACTTTCACGGGCAG 59.412 55.000 0.00 0.00 0.00 4.85
269 270 0.179234 TCTTCACACTTTCACGGGCA 59.821 50.000 0.00 0.00 0.00 5.36
270 271 1.264288 CTTCTTCACACTTTCACGGGC 59.736 52.381 0.00 0.00 0.00 6.13
271 272 2.802816 CTCTTCTTCACACTTTCACGGG 59.197 50.000 0.00 0.00 0.00 5.28
272 273 2.221981 GCTCTTCTTCACACTTTCACGG 59.778 50.000 0.00 0.00 0.00 4.94
273 274 2.221981 GGCTCTTCTTCACACTTTCACG 59.778 50.000 0.00 0.00 0.00 4.35
274 275 2.221981 CGGCTCTTCTTCACACTTTCAC 59.778 50.000 0.00 0.00 0.00 3.18
275 276 2.483876 CGGCTCTTCTTCACACTTTCA 58.516 47.619 0.00 0.00 0.00 2.69
276 277 1.801178 CCGGCTCTTCTTCACACTTTC 59.199 52.381 0.00 0.00 0.00 2.62
277 278 1.141053 ACCGGCTCTTCTTCACACTTT 59.859 47.619 0.00 0.00 0.00 2.66
278 279 0.759346 ACCGGCTCTTCTTCACACTT 59.241 50.000 0.00 0.00 0.00 3.16
279 280 0.034059 CACCGGCTCTTCTTCACACT 59.966 55.000 0.00 0.00 0.00 3.55
280 281 0.033504 TCACCGGCTCTTCTTCACAC 59.966 55.000 0.00 0.00 0.00 3.82
281 282 0.976641 ATCACCGGCTCTTCTTCACA 59.023 50.000 0.00 0.00 0.00 3.58
282 283 1.066858 TGATCACCGGCTCTTCTTCAC 60.067 52.381 0.00 0.00 0.00 3.18
283 284 1.205655 CTGATCACCGGCTCTTCTTCA 59.794 52.381 0.00 0.00 0.00 3.02
284 285 1.472376 CCTGATCACCGGCTCTTCTTC 60.472 57.143 0.00 0.00 0.00 2.87
285 286 0.539051 CCTGATCACCGGCTCTTCTT 59.461 55.000 0.00 0.00 0.00 2.52
286 287 0.324738 TCCTGATCACCGGCTCTTCT 60.325 55.000 0.00 0.00 0.00 2.85
287 288 0.103937 CTCCTGATCACCGGCTCTTC 59.896 60.000 0.00 0.00 0.00 2.87
288 289 0.616111 ACTCCTGATCACCGGCTCTT 60.616 55.000 0.00 0.00 0.00 2.85
289 290 0.259065 TACTCCTGATCACCGGCTCT 59.741 55.000 0.00 0.00 0.00 4.09
290 291 1.333177 ATACTCCTGATCACCGGCTC 58.667 55.000 0.00 0.00 0.00 4.70
291 292 2.240279 GTATACTCCTGATCACCGGCT 58.760 52.381 0.00 0.00 0.00 5.52
292 293 1.272769 GGTATACTCCTGATCACCGGC 59.727 57.143 0.00 0.00 0.00 6.13
293 294 2.877866 AGGTATACTCCTGATCACCGG 58.122 52.381 0.00 0.00 36.35 5.28
302 303 1.844497 GGTTTGGCCAGGTATACTCCT 59.156 52.381 5.11 0.00 38.51 3.69
303 304 1.844497 AGGTTTGGCCAGGTATACTCC 59.156 52.381 5.11 1.20 40.61 3.85
304 305 2.483188 CGAGGTTTGGCCAGGTATACTC 60.483 54.545 5.11 8.54 40.61 2.59
305 306 1.485066 CGAGGTTTGGCCAGGTATACT 59.515 52.381 5.11 0.00 40.61 2.12
306 307 1.474498 CCGAGGTTTGGCCAGGTATAC 60.474 57.143 5.11 0.40 40.61 1.47
307 308 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
308 309 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
309 310 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
310 311 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
350 351 2.125106 GTGTCGGGCTTGGCTAGG 60.125 66.667 0.00 0.00 0.00 3.02
351 352 0.605319 TTTGTGTCGGGCTTGGCTAG 60.605 55.000 0.00 0.00 0.00 3.42
352 353 0.179015 TTTTGTGTCGGGCTTGGCTA 60.179 50.000 0.00 0.00 0.00 3.93
353 354 1.040339 TTTTTGTGTCGGGCTTGGCT 61.040 50.000 0.00 0.00 0.00 4.75
354 355 1.439644 TTTTTGTGTCGGGCTTGGC 59.560 52.632 0.00 0.00 0.00 4.52
369 370 2.600470 GCCCGGGCCTGAGTTTTT 60.600 61.111 36.64 0.00 34.56 1.94
396 397 0.452987 CAGAAACACATGCCCGATGG 59.547 55.000 0.00 0.00 36.23 3.51
397 398 0.452987 CCAGAAACACATGCCCGATG 59.547 55.000 0.00 0.00 38.15 3.84
398 399 0.680921 CCCAGAAACACATGCCCGAT 60.681 55.000 0.00 0.00 0.00 4.18
399 400 1.303236 CCCAGAAACACATGCCCGA 60.303 57.895 0.00 0.00 0.00 5.14
400 401 2.993471 GCCCAGAAACACATGCCCG 61.993 63.158 0.00 0.00 0.00 6.13
401 402 2.649129 GGCCCAGAAACACATGCCC 61.649 63.158 0.00 0.00 32.74 5.36
402 403 2.649129 GGGCCCAGAAACACATGCC 61.649 63.158 19.95 0.00 38.16 4.40
403 404 2.973082 GGGCCCAGAAACACATGC 59.027 61.111 19.95 0.00 0.00 4.06
404 405 1.303236 TCGGGCCCAGAAACACATG 60.303 57.895 24.92 0.23 0.00 3.21
405 406 1.002134 CTCGGGCCCAGAAACACAT 60.002 57.895 24.92 0.00 0.00 3.21
406 407 2.429930 CTCGGGCCCAGAAACACA 59.570 61.111 24.92 0.00 0.00 3.72
407 408 3.056328 GCTCGGGCCCAGAAACAC 61.056 66.667 24.92 6.27 0.00 3.32
408 409 2.905996 ATGCTCGGGCCCAGAAACA 61.906 57.895 24.92 19.23 37.74 2.83
409 410 2.044946 ATGCTCGGGCCCAGAAAC 60.045 61.111 24.92 14.56 37.74 2.78
410 411 1.558167 TACATGCTCGGGCCCAGAAA 61.558 55.000 24.92 11.31 37.74 2.52
411 412 1.558167 TTACATGCTCGGGCCCAGAA 61.558 55.000 24.92 13.65 37.74 3.02
412 413 1.558167 TTTACATGCTCGGGCCCAGA 61.558 55.000 24.92 18.79 37.74 3.86
413 414 0.679640 TTTTACATGCTCGGGCCCAG 60.680 55.000 24.92 19.02 37.74 4.45
414 415 0.679640 CTTTTACATGCTCGGGCCCA 60.680 55.000 24.92 8.28 37.74 5.36
415 416 2.004808 GCTTTTACATGCTCGGGCCC 62.005 60.000 13.57 13.57 37.74 5.80
416 417 1.433471 GCTTTTACATGCTCGGGCC 59.567 57.895 3.94 0.00 37.74 5.80
417 418 1.433471 GGCTTTTACATGCTCGGGC 59.567 57.895 0.00 0.00 39.26 6.13
418 419 2.106844 GGGCTTTTACATGCTCGGG 58.893 57.895 0.00 0.00 0.00 5.14
421 422 0.373716 CGACGGGCTTTTACATGCTC 59.626 55.000 0.00 0.00 0.00 4.26
422 423 1.024579 CCGACGGGCTTTTACATGCT 61.025 55.000 5.81 0.00 0.00 3.79
423 424 1.427819 CCGACGGGCTTTTACATGC 59.572 57.895 5.81 0.00 0.00 4.06
424 425 2.094904 CCCGACGGGCTTTTACATG 58.905 57.895 22.37 0.00 35.35 3.21
425 426 4.629779 CCCGACGGGCTTTTACAT 57.370 55.556 22.37 0.00 35.35 2.29
453 454 2.124695 CTAAAGGTCGGGCTGGGC 60.125 66.667 0.00 0.00 0.00 5.36
454 455 1.559065 TTCCTAAAGGTCGGGCTGGG 61.559 60.000 0.00 0.00 36.34 4.45
455 456 0.326927 TTTCCTAAAGGTCGGGCTGG 59.673 55.000 0.00 0.00 36.34 4.85
456 457 2.017049 CATTTCCTAAAGGTCGGGCTG 58.983 52.381 0.00 0.00 36.34 4.85
457 458 1.064685 CCATTTCCTAAAGGTCGGGCT 60.065 52.381 0.00 0.00 36.34 5.19
458 459 1.389555 CCATTTCCTAAAGGTCGGGC 58.610 55.000 0.00 0.00 36.34 6.13
459 460 1.340600 TGCCATTTCCTAAAGGTCGGG 60.341 52.381 0.00 0.00 36.34 5.14
460 461 2.122783 TGCCATTTCCTAAAGGTCGG 57.877 50.000 0.00 0.00 36.34 4.79
461 462 4.513198 TTTTGCCATTTCCTAAAGGTCG 57.487 40.909 0.00 0.00 36.34 4.79
462 463 4.684242 CGTTTTTGCCATTTCCTAAAGGTC 59.316 41.667 0.00 0.00 36.34 3.85
463 464 4.342665 TCGTTTTTGCCATTTCCTAAAGGT 59.657 37.500 0.00 0.00 36.34 3.50
464 465 4.684242 GTCGTTTTTGCCATTTCCTAAAGG 59.316 41.667 0.00 0.00 0.00 3.11
465 466 4.381566 CGTCGTTTTTGCCATTTCCTAAAG 59.618 41.667 0.00 0.00 0.00 1.85
466 467 4.291783 CGTCGTTTTTGCCATTTCCTAAA 58.708 39.130 0.00 0.00 0.00 1.85
467 468 3.304794 CCGTCGTTTTTGCCATTTCCTAA 60.305 43.478 0.00 0.00 0.00 2.69
468 469 2.226912 CCGTCGTTTTTGCCATTTCCTA 59.773 45.455 0.00 0.00 0.00 2.94
469 470 1.000717 CCGTCGTTTTTGCCATTTCCT 60.001 47.619 0.00 0.00 0.00 3.36
470 471 1.414378 CCGTCGTTTTTGCCATTTCC 58.586 50.000 0.00 0.00 0.00 3.13
471 472 1.414378 CCCGTCGTTTTTGCCATTTC 58.586 50.000 0.00 0.00 0.00 2.17
472 473 0.598942 GCCCGTCGTTTTTGCCATTT 60.599 50.000 0.00 0.00 0.00 2.32
473 474 1.006688 GCCCGTCGTTTTTGCCATT 60.007 52.632 0.00 0.00 0.00 3.16
474 475 2.648454 GCCCGTCGTTTTTGCCAT 59.352 55.556 0.00 0.00 0.00 4.40
475 476 3.597728 GGCCCGTCGTTTTTGCCA 61.598 61.111 0.00 0.00 41.76 4.92
476 477 4.351938 GGGCCCGTCGTTTTTGCC 62.352 66.667 5.69 0.00 41.42 4.52
477 478 4.693525 CGGGCCCGTCGTTTTTGC 62.694 66.667 36.64 0.00 34.35 3.68
478 479 4.032987 CCGGGCCCGTCGTTTTTG 62.033 66.667 40.52 20.46 37.81 2.44
506 507 4.697756 TTGAGCACGAAGGCCGGG 62.698 66.667 2.18 0.00 46.39 5.73
507 508 1.791103 TTTTTGAGCACGAAGGCCGG 61.791 55.000 0.00 0.00 43.93 6.13
508 509 0.660300 GTTTTTGAGCACGAAGGCCG 60.660 55.000 0.00 0.00 45.44 6.13
509 510 0.668535 AGTTTTTGAGCACGAAGGCC 59.331 50.000 0.00 0.00 0.00 5.19
510 511 2.095718 CCTAGTTTTTGAGCACGAAGGC 60.096 50.000 0.00 0.00 0.00 4.35
511 512 2.095718 GCCTAGTTTTTGAGCACGAAGG 60.096 50.000 0.00 0.00 0.00 3.46
512 513 2.095718 GGCCTAGTTTTTGAGCACGAAG 60.096 50.000 0.00 0.00 0.00 3.79
513 514 1.877443 GGCCTAGTTTTTGAGCACGAA 59.123 47.619 0.00 0.00 0.00 3.85
514 515 1.519408 GGCCTAGTTTTTGAGCACGA 58.481 50.000 0.00 0.00 0.00 4.35
515 516 0.521735 GGGCCTAGTTTTTGAGCACG 59.478 55.000 0.84 0.00 0.00 5.34
516 517 0.521735 CGGGCCTAGTTTTTGAGCAC 59.478 55.000 0.84 0.00 0.00 4.40
517 518 0.398696 TCGGGCCTAGTTTTTGAGCA 59.601 50.000 0.84 0.00 0.00 4.26
518 519 1.087501 CTCGGGCCTAGTTTTTGAGC 58.912 55.000 0.84 0.00 0.00 4.26
519 520 1.087501 GCTCGGGCCTAGTTTTTGAG 58.912 55.000 0.84 1.81 0.00 3.02
520 521 3.243128 GCTCGGGCCTAGTTTTTGA 57.757 52.632 0.84 0.00 0.00 2.69
579 580 1.635817 TAGTCCTGGCCATGGGAAGC 61.636 60.000 15.05 4.61 33.01 3.86
580 581 1.143813 ATAGTCCTGGCCATGGGAAG 58.856 55.000 15.05 0.00 33.01 3.46
581 582 1.494721 GAATAGTCCTGGCCATGGGAA 59.505 52.381 15.05 1.72 33.01 3.97
582 583 1.140312 GAATAGTCCTGGCCATGGGA 58.860 55.000 15.13 8.01 0.00 4.37
583 584 0.846015 TGAATAGTCCTGGCCATGGG 59.154 55.000 15.13 4.96 0.00 4.00
584 585 2.107031 TCATGAATAGTCCTGGCCATGG 59.893 50.000 5.51 7.63 34.02 3.66
585 586 3.409570 CTCATGAATAGTCCTGGCCATG 58.590 50.000 5.51 2.84 34.40 3.66
586 587 2.224719 GCTCATGAATAGTCCTGGCCAT 60.225 50.000 5.51 0.00 0.00 4.40
587 588 1.141657 GCTCATGAATAGTCCTGGCCA 59.858 52.381 4.71 4.71 0.00 5.36
588 589 1.544314 GGCTCATGAATAGTCCTGGCC 60.544 57.143 0.00 0.00 32.72 5.36
589 590 1.544314 GGGCTCATGAATAGTCCTGGC 60.544 57.143 0.00 0.00 35.75 4.85
590 591 1.770658 TGGGCTCATGAATAGTCCTGG 59.229 52.381 5.75 0.00 39.59 4.45
591 592 2.804572 CGTGGGCTCATGAATAGTCCTG 60.805 54.545 0.00 0.00 39.59 3.86
592 593 1.414181 CGTGGGCTCATGAATAGTCCT 59.586 52.381 0.00 0.00 39.59 3.85
593 594 1.412710 TCGTGGGCTCATGAATAGTCC 59.587 52.381 5.87 0.00 39.30 3.85
594 595 2.546795 CCTCGTGGGCTCATGAATAGTC 60.547 54.545 10.33 0.00 38.33 2.59
595 596 1.414181 CCTCGTGGGCTCATGAATAGT 59.586 52.381 10.33 0.00 38.33 2.12
596 597 1.414181 ACCTCGTGGGCTCATGAATAG 59.586 52.381 10.33 4.36 38.33 1.73
597 598 1.412710 GACCTCGTGGGCTCATGAATA 59.587 52.381 10.33 0.00 38.69 1.75
598 599 0.179000 GACCTCGTGGGCTCATGAAT 59.821 55.000 10.33 0.50 38.69 2.57
599 600 1.596934 GACCTCGTGGGCTCATGAA 59.403 57.895 10.33 0.00 38.69 2.57
600 601 2.710902 CGACCTCGTGGGCTCATGA 61.711 63.158 8.54 8.54 39.94 3.07
601 602 2.202797 CGACCTCGTGGGCTCATG 60.203 66.667 7.94 0.00 39.94 3.07
602 603 4.148825 GCGACCTCGTGGGCTCAT 62.149 66.667 7.94 0.00 39.94 2.90
604 605 4.500116 GAGCGACCTCGTGGGCTC 62.500 72.222 15.77 15.77 39.94 4.70
606 607 4.500116 GAGAGCGACCTCGTGGGC 62.500 72.222 8.63 3.38 43.05 5.36
612 613 2.474612 GGTCTCCGAGAGCGACCTC 61.475 68.421 11.68 0.00 42.93 3.85
613 614 2.438795 GGTCTCCGAGAGCGACCT 60.439 66.667 11.68 0.00 42.93 3.85
614 615 3.519930 GGGTCTCCGAGAGCGACC 61.520 72.222 18.90 8.44 43.29 4.79
615 616 3.519930 GGGGTCTCCGAGAGCGAC 61.520 72.222 18.90 11.94 43.29 5.19
624 625 4.078516 CGGGTCAACGGGGTCTCC 62.079 72.222 0.00 0.00 0.00 3.71
625 626 4.754667 GCGGGTCAACGGGGTCTC 62.755 72.222 0.00 0.00 0.00 3.36
713 714 3.491652 GTTGGAGAGGAAGCGCGC 61.492 66.667 26.66 26.66 0.00 6.86
722 723 1.450312 GCCATGGTCGGTTGGAGAG 60.450 63.158 14.67 0.00 34.81 3.20
723 724 1.899437 GAGCCATGGTCGGTTGGAGA 61.899 60.000 14.67 0.00 34.81 3.71
760 761 1.291184 TTTGATCTGTGGCGACGCTG 61.291 55.000 20.77 1.91 42.82 5.18
761 762 1.005037 TTTGATCTGTGGCGACGCT 60.005 52.632 20.77 0.00 42.82 5.07
762 763 1.132640 GTTTGATCTGTGGCGACGC 59.867 57.895 12.43 12.43 42.66 5.19
804 812 2.601398 TATCCTACTCGGCGCGTCG 61.601 63.158 29.79 29.79 0.00 5.12
805 813 1.082235 GTATCCTACTCGGCGCGTC 60.082 63.158 5.51 3.30 0.00 5.19
806 814 2.890109 CGTATCCTACTCGGCGCGT 61.890 63.158 8.43 7.93 0.00 6.01
807 815 2.127345 CGTATCCTACTCGGCGCG 60.127 66.667 0.00 0.00 0.00 6.86
808 816 2.254651 CCGTATCCTACTCGGCGC 59.745 66.667 0.00 0.00 37.90 6.53
811 819 1.162181 TCGTGCCGTATCCTACTCGG 61.162 60.000 0.00 0.00 45.94 4.63
812 820 0.041488 GTCGTGCCGTATCCTACTCG 60.041 60.000 0.00 0.00 0.00 4.18
813 821 0.041488 CGTCGTGCCGTATCCTACTC 60.041 60.000 0.00 0.00 0.00 2.59
814 822 2.020131 CGTCGTGCCGTATCCTACT 58.980 57.895 0.00 0.00 0.00 2.57
815 823 1.656569 GCGTCGTGCCGTATCCTAC 60.657 63.158 0.00 0.00 37.76 3.18
816 824 2.114051 TGCGTCGTGCCGTATCCTA 61.114 57.895 0.00 0.00 45.60 2.94
817 825 3.445687 TGCGTCGTGCCGTATCCT 61.446 61.111 0.00 0.00 45.60 3.24
818 826 3.252484 GTGCGTCGTGCCGTATCC 61.252 66.667 0.00 0.00 45.60 2.59
819 827 3.252484 GGTGCGTCGTGCCGTATC 61.252 66.667 0.00 0.00 45.60 2.24
896 905 1.891296 TTGGGAGGGAGAGGAGGGAG 61.891 65.000 0.00 0.00 0.00 4.30
897 906 1.460839 TTTGGGAGGGAGAGGAGGGA 61.461 60.000 0.00 0.00 0.00 4.20
899 908 1.275421 GGTTTGGGAGGGAGAGGAGG 61.275 65.000 0.00 0.00 0.00 4.30
904 913 0.620700 GGCTAGGTTTGGGAGGGAGA 60.621 60.000 0.00 0.00 0.00 3.71
952 995 1.005450 GGAGGAATTAGTTGGCACCCA 59.995 52.381 0.00 0.00 0.00 4.51
975 1019 4.856607 GCTCGGACCGCGGAAGAG 62.857 72.222 35.90 32.08 0.00 2.85
984 1028 4.479993 ATGGCTGCAGCTCGGACC 62.480 66.667 35.82 19.78 41.70 4.46
986 1030 4.478371 CCATGGCTGCAGCTCGGA 62.478 66.667 35.82 18.85 41.70 4.55
1066 1111 0.529119 GTGTTGACGACGAGGTTGGT 60.529 55.000 0.00 0.00 0.00 3.67
1307 1373 2.983930 GAGAGCACGCTGTCCTCGT 61.984 63.158 4.90 0.00 41.28 4.18
1440 1506 3.469970 ACCTCATCCGCGGCATCA 61.470 61.111 23.51 2.57 0.00 3.07
1497 1563 4.707448 AGCTTCTCGATGACCTTCTTCTTA 59.293 41.667 0.00 0.00 0.00 2.10
1509 1575 2.158986 AGGGTTGATGAGCTTCTCGATG 60.159 50.000 0.00 0.00 32.35 3.84
1597 1675 2.740714 GCACACCGGCAGAATCGAC 61.741 63.158 0.00 0.00 0.00 4.20
1598 1676 2.434185 GCACACCGGCAGAATCGA 60.434 61.111 0.00 0.00 0.00 3.59
1599 1677 3.499737 GGCACACCGGCAGAATCG 61.500 66.667 0.00 0.00 40.76 3.34
1844 1940 3.120991 CGTTCAACTCGACAAAGTCATCC 60.121 47.826 0.00 0.00 32.09 3.51
1851 1947 2.605818 CAGGAACGTTCAACTCGACAAA 59.394 45.455 28.24 0.00 0.00 2.83
1887 1983 5.084818 TCATCGTCATACAACTCACCATT 57.915 39.130 0.00 0.00 0.00 3.16
1933 2029 2.390938 TGTCTTGCACGTCTAAAGTCG 58.609 47.619 0.00 0.00 0.00 4.18
2379 2475 6.248433 ACCATCCACTTTTGATATCAACTGT 58.752 36.000 17.76 15.33 35.28 3.55
2571 2673 8.530804 TCAGATATCTTCACAATCTTCTCTGA 57.469 34.615 1.33 0.00 34.61 3.27
2651 2753 4.260948 GCAGTATCATAAACCTTGCTCTGC 60.261 45.833 0.00 0.00 37.87 4.26
2759 2861 5.426185 ACCATCCTTCATATGCAAACCAATT 59.574 36.000 0.00 0.00 0.00 2.32
3096 3198 2.380084 TCAATCTGCCGTACTGTTCC 57.620 50.000 0.00 0.00 0.00 3.62
3200 3302 1.263356 AATGGAAGAGACCGTCCGAA 58.737 50.000 0.00 0.00 42.83 4.30
3203 3305 3.053831 TCAAAATGGAAGAGACCGTCC 57.946 47.619 0.00 0.00 40.72 4.79
3557 3659 0.673644 CACGGTCTACCCTTGCCAAG 60.674 60.000 0.00 0.00 0.00 3.61
3635 3737 0.107703 GATTGACACCCCATGCGAGA 60.108 55.000 0.00 0.00 0.00 4.04
3689 3791 7.066307 AGTGCCCTTTTCTGAATTGTAAATT 57.934 32.000 0.00 0.00 0.00 1.82
3832 3934 3.201290 AGCTGTTGATTCATAAGAGCCG 58.799 45.455 4.38 0.00 43.23 5.52
3834 3936 4.880696 AGGAAGCTGTTGATTCATAAGAGC 59.119 41.667 0.00 0.00 42.73 4.09
3854 3956 9.434275 TTGGATATAAACTGACTCTCAATAGGA 57.566 33.333 0.00 0.00 0.00 2.94
3921 4023 3.181526 CCTCCTGGGCATTCTGAAC 57.818 57.895 0.00 0.00 0.00 3.18
3988 4098 3.117888 AGGTAGGCCATACAATGTTGGAG 60.118 47.826 5.01 0.00 35.96 3.86
4133 4247 4.039004 AGCACAATAGCCAACACAATTTGA 59.961 37.500 2.79 0.00 34.23 2.69
4134 4248 4.309099 AGCACAATAGCCAACACAATTTG 58.691 39.130 0.00 0.00 34.23 2.32
4135 4249 4.605640 AGCACAATAGCCAACACAATTT 57.394 36.364 0.00 0.00 34.23 1.82
4136 4250 4.039004 TCAAGCACAATAGCCAACACAATT 59.961 37.500 0.00 0.00 34.23 2.32
4164 4278 7.148590 GGCAATACAAACATGAAATTTGAGGAC 60.149 37.037 12.69 0.55 39.01 3.85
4175 4289 3.495331 ACAGGTGGCAATACAAACATGA 58.505 40.909 0.00 0.00 0.00 3.07
4245 4360 3.000727 CAACCGTTGGACACTAGGATTC 58.999 50.000 3.10 0.00 0.00 2.52
4367 4885 5.277828 GCCAATTTAGTATCCTGTAAAGGCG 60.278 44.000 0.00 0.00 0.00 5.52
4371 4889 8.815565 TTCATGCCAATTTAGTATCCTGTAAA 57.184 30.769 0.00 0.00 0.00 2.01
4500 5104 4.690122 ACGCTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
4501 5105 4.982916 AGACGCTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
4503 5107 3.793559 AGACGCTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
4505 5109 8.542497 AATATAAGACGCTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4509 5113 9.638300 CTCATAATATAAGACGCTTTTTGACAC 57.362 33.333 0.00 0.00 0.00 3.67
4510 5114 9.594478 TCTCATAATATAAGACGCTTTTTGACA 57.406 29.630 0.00 0.00 0.00 3.58
4511 5115 9.851043 GTCTCATAATATAAGACGCTTTTTGAC 57.149 33.333 0.00 0.00 31.01 3.18
4512 5116 9.594478 TGTCTCATAATATAAGACGCTTTTTGA 57.406 29.630 0.00 0.00 41.84 2.69
4514 5118 9.817809 TCTGTCTCATAATATAAGACGCTTTTT 57.182 29.630 0.00 0.00 41.84 1.94
4515 5119 9.469807 CTCTGTCTCATAATATAAGACGCTTTT 57.530 33.333 0.00 0.00 41.84 2.27
4517 5183 7.309499 CCCTCTGTCTCATAATATAAGACGCTT 60.309 40.741 0.00 0.00 41.84 4.68
4519 5185 6.151312 TCCCTCTGTCTCATAATATAAGACGC 59.849 42.308 0.00 0.00 41.84 5.19
4521 5187 8.644374 ACTCCCTCTGTCTCATAATATAAGAC 57.356 38.462 0.00 0.00 39.87 3.01
4529 5195 7.496346 AAATTGTACTCCCTCTGTCTCATAA 57.504 36.000 0.00 0.00 0.00 1.90
4532 5198 8.603898 TTATAAATTGTACTCCCTCTGTCTCA 57.396 34.615 0.00 0.00 0.00 3.27
4534 5200 9.838339 CAATTATAAATTGTACTCCCTCTGTCT 57.162 33.333 4.55 0.00 0.00 3.41
4535 5201 9.057089 CCAATTATAAATTGTACTCCCTCTGTC 57.943 37.037 10.54 0.00 0.00 3.51
4538 5204 9.799106 CATCCAATTATAAATTGTACTCCCTCT 57.201 33.333 10.54 0.00 0.00 3.69
4546 5212 6.014669 GGGGCAGCATCCAATTATAAATTGTA 60.015 38.462 10.54 0.00 0.00 2.41
4547 5213 5.221702 GGGGCAGCATCCAATTATAAATTGT 60.222 40.000 10.54 0.00 0.00 2.71
4548 5214 5.012354 AGGGGCAGCATCCAATTATAAATTG 59.988 40.000 6.77 5.56 0.00 2.32
4549 5215 5.012354 CAGGGGCAGCATCCAATTATAAATT 59.988 40.000 6.77 0.00 0.00 1.82
4588 5254 0.698238 AACCCATACAAGCAGAGGCA 59.302 50.000 0.00 0.00 44.61 4.75
4600 5266 5.647658 CAGCAGAACAAAGTATGAACCCATA 59.352 40.000 0.00 0.00 34.31 2.74
4601 5267 4.460382 CAGCAGAACAAAGTATGAACCCAT 59.540 41.667 0.00 0.00 36.81 4.00
4612 5278 3.879295 TCCAAAGAGACAGCAGAACAAAG 59.121 43.478 0.00 0.00 0.00 2.77
4642 5308 6.655848 ACTCTACGAACACTTCTAGAGACAAT 59.344 38.462 16.81 0.00 38.44 2.71
4648 5314 5.485620 TGCTACTCTACGAACACTTCTAGA 58.514 41.667 0.00 0.00 0.00 2.43
4680 5346 5.407387 GCGAGTTGACTACTTCAATTAACCA 59.593 40.000 0.00 0.00 46.14 3.67
4752 5419 1.945387 AGCATGCATCACCTTACGAG 58.055 50.000 21.98 0.00 0.00 4.18
4808 5509 8.276252 TGAAAAGATAGGGCTTATGTTACAAC 57.724 34.615 0.00 0.00 0.00 3.32
4820 5521 7.484959 CGTTTCTTTGTATTGAAAAGATAGGGC 59.515 37.037 0.00 0.00 41.86 5.19
4822 5523 8.020819 TGCGTTTCTTTGTATTGAAAAGATAGG 58.979 33.333 0.00 3.08 41.86 2.57
4830 5531 7.648142 AGATTCTTGCGTTTCTTTGTATTGAA 58.352 30.769 0.00 0.00 0.00 2.69
4844 5545 4.510038 AAATGCAAAGAGATTCTTGCGT 57.490 36.364 0.00 1.94 36.71 5.24
4846 5547 5.285607 CGAGAAAATGCAAAGAGATTCTTGC 59.714 40.000 0.00 2.49 36.71 4.01
4870 5571 8.785329 AACAGGAGAACAATATTTTCTCTCTC 57.215 34.615 24.09 12.96 45.68 3.20
4874 5575 7.391833 AGTGGAACAGGAGAACAATATTTTCTC 59.608 37.037 20.60 20.60 43.26 2.87
4876 5577 7.308435 CAGTGGAACAGGAGAACAATATTTTC 58.692 38.462 0.00 0.00 41.80 2.29
5306 6007 9.561069 GGAACATGTTACCTGTTTGATATAGAT 57.439 33.333 11.95 0.00 36.98 1.98
5334 6035 5.769484 AATCAGGAGCTGCATTTAGAATG 57.231 39.130 8.35 0.00 0.00 2.67
5394 6106 7.546316 CACTCTGCATCATGGAGAAGAATATAG 59.454 40.741 10.45 0.00 44.20 1.31
5396 6108 6.231951 CACTCTGCATCATGGAGAAGAATAT 58.768 40.000 10.45 0.00 44.20 1.28
5398 6110 4.452825 CACTCTGCATCATGGAGAAGAAT 58.547 43.478 10.45 0.00 44.20 2.40
5401 6114 1.941294 GCACTCTGCATCATGGAGAAG 59.059 52.381 10.45 7.07 44.20 2.85
5566 6279 6.600822 TCTCCAGTTTCATCAGGATTTCATTC 59.399 38.462 0.00 0.00 0.00 2.67
5720 6433 4.468510 ACGAGTAATAGGTTGAACATGGGA 59.531 41.667 0.00 0.00 0.00 4.37
5773 6486 1.634973 TCATCCCACTGGAAATCAGCA 59.365 47.619 0.00 0.00 45.98 4.41
5959 6672 5.460091 CCACTTGTCAGATACGACATGTATG 59.540 44.000 0.00 0.00 46.62 2.39
6046 6759 4.095590 AGCAATTCGGTTGGTGGG 57.904 55.556 5.57 0.00 46.18 4.61
6244 6957 4.638865 GCCGTTTGATGGTTCCTTAGTATT 59.361 41.667 0.00 0.00 0.00 1.89
6264 6977 3.520290 TGGTTTCACTAGATACTGCCG 57.480 47.619 0.00 0.00 0.00 5.69
6275 6988 3.068024 ACAATTCGCATGTTGGTTTCACT 59.932 39.130 0.00 0.00 0.00 3.41
6955 7668 2.935201 GACACCTCTCGTATACGTGTCT 59.065 50.000 26.23 10.99 37.38 3.41
6958 7671 3.752412 TTGACACCTCTCGTATACGTG 57.248 47.619 23.67 21.09 40.80 4.49
6964 7677 5.227908 GTTTCTTCATTGACACCTCTCGTA 58.772 41.667 0.00 0.00 0.00 3.43
7345 8261 8.411991 TCATATGATCATGCAAATTATGGTGT 57.588 30.769 18.72 0.00 0.00 4.16
7591 8507 0.696501 GACCAAGGTTGAGGGGCTTA 59.303 55.000 0.00 0.00 0.00 3.09
7674 8590 5.423931 AGGAGACCTTTCATCTTAGTCTTCC 59.576 44.000 0.00 0.00 37.90 3.46
7715 8631 4.102054 TGGAAGCTCTGCATATTCTGATGA 59.898 41.667 0.00 0.00 0.00 2.92
7814 8730 2.424246 TCGCCTTGACGTGTACATCATA 59.576 45.455 0.00 0.00 0.00 2.15
7872 8788 0.678048 GGCTGCCAGGTTCCTTACAG 60.678 60.000 15.17 11.40 0.00 2.74
7877 8793 4.021925 GTCGGCTGCCAGGTTCCT 62.022 66.667 20.29 0.00 0.00 3.36
8299 9224 2.242043 CCAACCTCAGATGGCAAGTTT 58.758 47.619 0.00 0.00 0.00 2.66
8372 9300 2.492012 GCTGGAGCTATCACCAATCAG 58.508 52.381 0.00 0.00 38.21 2.90
8560 9488 2.031163 GATCAATCCCCTCCGGCG 59.969 66.667 0.00 0.00 0.00 6.46
8665 9593 7.499232 AGAATATAAATCTGGTGGTGCAAGTAC 59.501 37.037 0.00 0.00 0.00 2.73
8683 9611 7.482474 CAACACCATGACATGCAAGAATATAA 58.518 34.615 10.10 0.00 0.00 0.98
8728 9656 2.093921 TCCACTTCGTGTCACAGACAAA 60.094 45.455 3.42 0.00 44.49 2.83
8729 9657 1.478916 TCCACTTCGTGTCACAGACAA 59.521 47.619 3.42 0.00 44.49 3.18
8756 9684 9.573133 CAGGTTTTATGTTCATAAATCTGTTCC 57.427 33.333 22.66 16.16 31.14 3.62
8950 9878 1.557443 GACACTGTTCGAAGGCCGTG 61.557 60.000 0.00 6.32 39.75 4.94
8952 9880 2.372690 CGACACTGTTCGAAGGCCG 61.373 63.158 0.00 0.00 41.78 6.13
8963 9891 2.872245 ACATGGACAAGTTTCGACACTG 59.128 45.455 4.72 2.65 0.00 3.66
8970 9898 2.159627 CGGTAGCACATGGACAAGTTTC 59.840 50.000 0.00 0.00 0.00 2.78
9077 10006 5.968387 TTCAGAAAGAAGAAACAGTCGAC 57.032 39.130 7.70 7.70 0.00 4.20
9091 10020 8.424274 AAAAATAGTTGGCAACTTTCAGAAAG 57.576 30.769 35.13 19.71 42.81 2.62
9184 10114 3.134458 CACTTCCTCTTGACTGTTGACC 58.866 50.000 0.00 0.00 0.00 4.02
9201 10131 3.073946 AGGTATTTGTACCAGTGGCACTT 59.926 43.478 19.43 7.31 42.49 3.16
9265 10195 7.692908 TTTCTTTCGAAATTTTCATGACCAC 57.307 32.000 11.70 0.00 34.35 4.16
9300 10230 6.993786 TGCATCGAATTAACCTTTGACATA 57.006 33.333 0.00 0.00 0.00 2.29
9315 10249 4.327982 TTGTTTTTCCCATTGCATCGAA 57.672 36.364 0.00 0.00 0.00 3.71
9365 10300 6.680810 TGTGCATTTGTCTTCTTATTTCAGG 58.319 36.000 0.00 0.00 0.00 3.86
9453 10388 7.711339 AGATTGGCTAGTGTAATACAGTTAAGC 59.289 37.037 12.35 12.35 34.15 3.09
9513 10455 9.817365 CAAACATTCTACAAAAGACAGATAGTG 57.183 33.333 0.00 0.00 32.51 2.74
9528 10470 7.568497 GCTTCTAGCGATCATCAAACATTCTAC 60.568 40.741 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.