Multiple sequence alignment - TraesCS7B01G103100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G103100 chr7B 100.000 7198 0 0 1 7198 118653685 118646488 0.000000e+00 13293.0
1 TraesCS7B01G103100 chr7B 88.387 155 10 2 2173 2327 118651360 118651214 5.740000e-41 180.0
2 TraesCS7B01G103100 chr7B 88.387 155 10 2 2326 2472 118651513 118651359 5.740000e-41 180.0
3 TraesCS7B01G103100 chr7B 93.750 48 1 2 7094 7141 667183707 667183752 3.600000e-08 71.3
4 TraesCS7B01G103100 chr7D 97.753 6187 107 14 602 6779 156225598 156219435 0.000000e+00 10626.0
5 TraesCS7B01G103100 chr7D 90.807 533 30 10 925 1447 124164072 124164595 0.000000e+00 695.0
6 TraesCS7B01G103100 chr7D 97.324 299 8 0 6891 7189 351294014 351293716 6.440000e-140 508.0
7 TraesCS7B01G103100 chr7D 92.082 341 6 2 6520 6839 351294515 351294175 1.830000e-125 460.0
8 TraesCS7B01G103100 chr7D 85.467 289 32 6 318 598 242294545 242294831 7.060000e-75 292.0
9 TraesCS7B01G103100 chr7D 89.677 155 8 3 2173 2327 156223893 156223747 2.650000e-44 191.0
10 TraesCS7B01G103100 chr7D 87.742 155 11 2 2326 2472 156224046 156223892 2.670000e-39 174.0
11 TraesCS7B01G103100 chr7D 88.073 109 9 2 6991 7095 156219300 156219192 7.580000e-25 126.0
12 TraesCS7B01G103100 chr7A 97.259 3648 76 10 3215 6839 210859295 210855649 0.000000e+00 6161.0
13 TraesCS7B01G103100 chr7A 94.680 2575 106 23 601 3172 210861840 210859294 0.000000e+00 3967.0
14 TraesCS7B01G103100 chr7A 87.821 156 10 2 2326 2472 210860293 210860138 2.670000e-39 174.0
15 TraesCS7B01G103100 chr7A 87.097 155 12 3 2173 2327 210860139 210859993 1.240000e-37 169.0
16 TraesCS7B01G103100 chr7A 83.117 77 7 4 7094 7165 239033229 239033154 1.680000e-06 65.8
17 TraesCS7B01G103100 chr1D 95.987 299 12 0 6891 7189 12785775 12785477 3.020000e-133 486.0
18 TraesCS7B01G103100 chr1D 92.082 341 6 2 6520 6839 12786275 12785935 1.830000e-125 460.0
19 TraesCS7B01G103100 chr1D 78.779 344 30 24 1110 1450 285559540 285559237 2.650000e-44 191.0
20 TraesCS7B01G103100 chr1D 92.727 55 4 0 6840 6894 12785869 12785815 5.990000e-11 80.5
21 TraesCS7B01G103100 chr5D 91.789 341 7 2 6520 6839 438349433 438349773 8.510000e-124 455.0
22 TraesCS7B01G103100 chr5D 96.639 119 4 0 6891 7009 438349933 438350051 1.580000e-46 198.0
23 TraesCS7B01G103100 chr5D 91.667 72 4 2 7093 7164 278628176 278628245 1.650000e-16 99.0
24 TraesCS7B01G103100 chr5D 94.545 55 3 0 6840 6894 438349839 438349893 1.290000e-12 86.1
25 TraesCS7B01G103100 chr2A 90.909 341 10 2 6520 6839 274083547 274083887 8.570000e-119 438.0
26 TraesCS7B01G103100 chr2A 91.736 121 8 1 6891 7009 274084047 274084167 4.470000e-37 167.0
27 TraesCS7B01G103100 chr2A 76.636 321 31 23 1131 1450 103129267 103128990 3.500000e-28 137.0
28 TraesCS7B01G103100 chr2D 87.977 341 5 3 6520 6839 29241885 29241560 3.170000e-98 370.0
29 TraesCS7B01G103100 chr2D 85.263 285 32 7 325 600 207639728 207640011 1.180000e-72 285.0
30 TraesCS7B01G103100 chr2D 96.639 119 4 0 6891 7009 29241400 29241282 1.580000e-46 198.0
31 TraesCS7B01G103100 chr2D 94.444 90 4 1 6888 6976 568888795 568888706 3.500000e-28 137.0
32 TraesCS7B01G103100 chr2B 87.018 285 28 9 323 599 733081360 733081643 5.420000e-81 313.0
33 TraesCS7B01G103100 chr2B 94.444 90 4 1 6888 6976 588622072 588622161 3.500000e-28 137.0
34 TraesCS7B01G103100 chr2B 81.203 133 16 8 1318 1447 538232979 538233105 1.650000e-16 99.0
35 TraesCS7B01G103100 chr2B 93.548 62 4 0 1392 1453 782984297 782984236 7.690000e-15 93.5
36 TraesCS7B01G103100 chr2B 97.619 42 0 1 7094 7135 142241593 142241633 3.600000e-08 71.3
37 TraesCS7B01G103100 chr4D 86.316 285 29 7 325 600 341214549 341214832 1.170000e-77 302.0
38 TraesCS7B01G103100 chr4D 85.866 283 31 8 323 597 473651622 473651903 7.060000e-75 292.0
39 TraesCS7B01G103100 chr4D 93.506 77 5 0 1371 1447 95773470 95773546 1.640000e-21 115.0
40 TraesCS7B01G103100 chr3D 86.121 281 30 6 322 594 417604968 417605247 1.960000e-75 294.0
41 TraesCS7B01G103100 chr3D 86.071 280 29 7 323 594 553310476 553310199 7.060000e-75 292.0
42 TraesCS7B01G103100 chr3D 92.473 93 6 1 6888 6979 540564847 540564755 1.630000e-26 132.0
43 TraesCS7B01G103100 chr6D 86.071 280 30 5 325 596 458527007 458527285 7.060000e-75 292.0
44 TraesCS7B01G103100 chr3A 85.816 282 31 5 323 596 470832299 470832019 2.540000e-74 291.0
45 TraesCS7B01G103100 chr3B 76.991 339 27 25 1110 1447 157759700 157759988 5.820000e-31 147.0
46 TraesCS7B01G103100 chr5B 93.407 91 5 1 6887 6976 522942357 522942447 4.530000e-27 134.0
47 TraesCS7B01G103100 chr5A 95.556 45 1 1 7093 7137 2423960 2423917 3.600000e-08 71.3
48 TraesCS7B01G103100 chr5A 97.619 42 0 1 7094 7135 198201717 198201757 3.600000e-08 71.3
49 TraesCS7B01G103100 chr1B 89.474 57 4 2 7090 7145 453517096 453517041 3.600000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G103100 chr7B 118646488 118653685 7197 True 4551.000000 13293 92.258000 1 7198 3 chr7B.!!$R1 7197
1 TraesCS7B01G103100 chr7D 156219192 156225598 6406 True 2779.250000 10626 90.811250 602 7095 4 chr7D.!!$R1 6493
2 TraesCS7B01G103100 chr7D 124164072 124164595 523 False 695.000000 695 90.807000 925 1447 1 chr7D.!!$F1 522
3 TraesCS7B01G103100 chr7D 351293716 351294515 799 True 484.000000 508 94.703000 6520 7189 2 chr7D.!!$R2 669
4 TraesCS7B01G103100 chr7A 210855649 210861840 6191 True 2617.750000 6161 91.714250 601 6839 4 chr7A.!!$R2 6238
5 TraesCS7B01G103100 chr1D 12785477 12786275 798 True 342.166667 486 93.598667 6520 7189 3 chr1D.!!$R2 669
6 TraesCS7B01G103100 chr5D 438349433 438350051 618 False 246.366667 455 94.324333 6520 7009 3 chr5D.!!$F2 489
7 TraesCS7B01G103100 chr2A 274083547 274084167 620 False 302.500000 438 91.322500 6520 7009 2 chr2A.!!$F1 489
8 TraesCS7B01G103100 chr2D 29241282 29241885 603 True 284.000000 370 92.308000 6520 7009 2 chr2D.!!$R2 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.035439 AATGAAACATCGTCGGGGCT 60.035 50.000 0.00 0.00 0.00 5.19 F
181 182 0.106335 TCGTCGGGGCTACAACAAAA 59.894 50.000 0.00 0.00 0.00 2.44 F
319 320 0.108615 AGGGAGCGTTTGATCAGACG 60.109 55.000 28.83 28.83 41.19 4.18 F
592 593 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35 F
1605 1619 0.253327 AATCCCTCTCCAAGGTTCGC 59.747 55.000 0.00 0.00 44.56 4.70 F
1617 1631 2.586357 GTTCGCCCAGATCTCCGC 60.586 66.667 0.00 0.00 0.00 5.54 F
2893 2908 2.038387 ATGCCGTGTTATGACCTTCC 57.962 50.000 0.00 0.00 0.00 3.46 F
3349 3368 1.831106 TCACCAACCTGCGATGTAGAT 59.169 47.619 0.00 0.00 0.00 1.98 F
5118 5137 2.802719 TCAAACCTATTGGGGAAGCAC 58.197 47.619 0.00 0.00 40.03 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2069 0.244994 CAGGTAGACGCAAGCACTCT 59.755 55.000 0.00 0.00 45.62 3.24 R
2066 2080 1.555075 TCATGAAGTGGGCAGGTAGAC 59.445 52.381 0.00 0.00 0.00 2.59 R
2386 2401 2.295349 ACTATTGCAGGCAAGCATATGC 59.705 45.455 20.36 20.36 45.19 3.14 R
2656 2671 4.072131 TGAAGGCAGGATTGAACTAACAC 58.928 43.478 0.00 0.00 0.00 3.32 R
2707 2722 6.324819 AGAAATAGATTGTGTGGCAAAATCG 58.675 36.000 11.11 0.00 41.49 3.34 R
3041 3056 6.365153 GCATGAGCAAAAACAGCATGGTTAT 61.365 40.000 0.00 0.00 43.77 1.89 R
4542 4561 4.574892 TCATACTTTGATCGTTCCTGCAA 58.425 39.130 0.00 0.00 0.00 4.08 R
5148 5167 2.369394 CAATGGCCCTTCAGTTAGGAC 58.631 52.381 0.00 0.00 37.50 3.85 R
6835 6877 0.471022 AAAACCATGAAAGCCCCCGT 60.471 50.000 0.00 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.309528 TCAGAGTTGTGTTGAAGCGT 57.690 45.000 0.00 0.00 0.00 5.07
21 22 1.933181 TCAGAGTTGTGTTGAAGCGTG 59.067 47.619 0.00 0.00 0.00 5.34
22 23 1.003545 CAGAGTTGTGTTGAAGCGTGG 60.004 52.381 0.00 0.00 0.00 4.94
23 24 0.317020 GAGTTGTGTTGAAGCGTGGC 60.317 55.000 0.00 0.00 0.00 5.01
24 25 1.654137 GTTGTGTTGAAGCGTGGCG 60.654 57.895 0.00 0.00 0.00 5.69
25 26 2.829206 TTGTGTTGAAGCGTGGCGG 61.829 57.895 0.00 0.00 0.00 6.13
26 27 4.683334 GTGTTGAAGCGTGGCGGC 62.683 66.667 0.00 0.00 0.00 6.53
51 52 3.818121 AACGCGGTGTTGCAGGCTA 62.818 57.895 12.47 0.00 40.00 3.93
52 53 3.490759 CGCGGTGTTGCAGGCTAG 61.491 66.667 0.00 0.00 34.15 3.42
53 54 3.804193 GCGGTGTTGCAGGCTAGC 61.804 66.667 6.04 6.04 34.15 3.42
54 55 3.127533 CGGTGTTGCAGGCTAGCC 61.128 66.667 27.19 27.19 0.00 3.93
55 56 3.127533 GGTGTTGCAGGCTAGCCG 61.128 66.667 27.83 22.20 41.95 5.52
56 57 3.127533 GTGTTGCAGGCTAGCCGG 61.128 66.667 27.52 27.52 41.95 6.13
57 58 3.636231 TGTTGCAGGCTAGCCGGT 61.636 61.111 30.76 12.68 41.95 5.28
58 59 3.127533 GTTGCAGGCTAGCCGGTG 61.128 66.667 30.76 23.84 41.95 4.94
59 60 4.408821 TTGCAGGCTAGCCGGTGG 62.409 66.667 30.76 20.88 41.95 4.61
78 79 3.429141 CTGCAGCAGCCGGTGAAG 61.429 66.667 10.14 0.00 43.56 3.02
85 86 2.270205 AGCCGGTGAAGCTGATGG 59.730 61.111 1.90 0.00 39.69 3.51
86 87 2.268920 GCCGGTGAAGCTGATGGA 59.731 61.111 1.90 0.00 0.00 3.41
87 88 1.817099 GCCGGTGAAGCTGATGGAG 60.817 63.158 1.90 0.00 0.00 3.86
96 97 3.126879 CTGATGGAGCGCGCCAAA 61.127 61.111 36.33 25.12 42.16 3.28
97 98 3.104602 CTGATGGAGCGCGCCAAAG 62.105 63.158 36.33 29.51 42.16 2.77
98 99 3.127533 GATGGAGCGCGCCAAAGT 61.128 61.111 36.33 21.03 42.16 2.66
99 100 2.672996 ATGGAGCGCGCCAAAGTT 60.673 55.556 36.33 17.88 42.16 2.66
100 101 2.855728 GATGGAGCGCGCCAAAGTTG 62.856 60.000 36.33 0.00 42.16 3.16
109 110 2.729378 GCCAAAGTTGCGATGAAGC 58.271 52.632 0.00 0.00 37.71 3.86
110 111 0.039256 GCCAAAGTTGCGATGAAGCA 60.039 50.000 0.00 0.00 46.54 3.91
119 120 4.147701 GATGAAGCATCGGTGGGG 57.852 61.111 0.00 0.00 31.01 4.96
120 121 2.124151 ATGAAGCATCGGTGGGGC 60.124 61.111 0.00 0.00 0.00 5.80
121 122 2.615227 GATGAAGCATCGGTGGGGCT 62.615 60.000 0.00 0.00 40.14 5.19
122 123 2.825836 GAAGCATCGGTGGGGCTG 60.826 66.667 0.00 0.00 38.04 4.85
130 131 3.971702 GGTGGGGCTGCCAGAGTT 61.972 66.667 22.05 0.00 0.00 3.01
131 132 2.674380 GTGGGGCTGCCAGAGTTG 60.674 66.667 22.05 0.00 0.00 3.16
132 133 4.666253 TGGGGCTGCCAGAGTTGC 62.666 66.667 22.05 0.11 0.00 4.17
133 134 4.666253 GGGGCTGCCAGAGTTGCA 62.666 66.667 22.05 0.00 37.17 4.08
139 140 3.011085 TGCCAGAGTTGCAGTGAAG 57.989 52.632 0.00 0.00 34.05 3.02
140 141 1.168407 TGCCAGAGTTGCAGTGAAGC 61.168 55.000 0.00 0.00 34.05 3.86
141 142 1.864862 CCAGAGTTGCAGTGAAGCG 59.135 57.895 0.00 0.00 37.31 4.68
142 143 1.206072 CAGAGTTGCAGTGAAGCGC 59.794 57.895 0.00 0.00 37.31 5.92
143 144 2.171940 GAGTTGCAGTGAAGCGCG 59.828 61.111 0.00 0.00 37.31 6.86
144 145 3.918114 GAGTTGCAGTGAAGCGCGC 62.918 63.158 26.66 26.66 37.31 6.86
158 159 4.049640 GCGCGGGGTTGCAATGAA 62.050 61.111 8.83 0.00 34.15 2.57
159 160 2.647875 CGCGGGGTTGCAATGAAA 59.352 55.556 0.59 0.00 34.15 2.69
160 161 1.732683 CGCGGGGTTGCAATGAAAC 60.733 57.895 0.59 0.00 34.15 2.78
161 162 1.365633 GCGGGGTTGCAATGAAACA 59.634 52.632 6.42 0.00 34.15 2.83
162 163 0.037419 GCGGGGTTGCAATGAAACAT 60.037 50.000 6.42 0.00 34.15 2.71
163 164 1.994916 CGGGGTTGCAATGAAACATC 58.005 50.000 6.42 0.00 0.00 3.06
164 165 1.732077 CGGGGTTGCAATGAAACATCG 60.732 52.381 6.42 5.31 0.00 3.84
165 166 1.272212 GGGGTTGCAATGAAACATCGT 59.728 47.619 6.42 0.00 0.00 3.73
166 167 2.595386 GGGTTGCAATGAAACATCGTC 58.405 47.619 6.42 0.00 0.00 4.20
167 168 2.241722 GGTTGCAATGAAACATCGTCG 58.758 47.619 6.42 0.00 0.00 5.12
168 169 2.241722 GTTGCAATGAAACATCGTCGG 58.758 47.619 0.59 0.00 0.00 4.79
169 170 0.801872 TGCAATGAAACATCGTCGGG 59.198 50.000 0.00 0.00 0.00 5.14
170 171 0.098728 GCAATGAAACATCGTCGGGG 59.901 55.000 0.00 0.00 0.00 5.73
171 172 0.098728 CAATGAAACATCGTCGGGGC 59.901 55.000 0.00 0.00 0.00 5.80
172 173 0.035439 AATGAAACATCGTCGGGGCT 60.035 50.000 0.00 0.00 0.00 5.19
173 174 0.828022 ATGAAACATCGTCGGGGCTA 59.172 50.000 0.00 0.00 0.00 3.93
174 175 0.108520 TGAAACATCGTCGGGGCTAC 60.109 55.000 0.00 0.00 0.00 3.58
175 176 0.108520 GAAACATCGTCGGGGCTACA 60.109 55.000 0.00 0.00 0.00 2.74
176 177 0.322322 AAACATCGTCGGGGCTACAA 59.678 50.000 0.00 0.00 0.00 2.41
177 178 0.390735 AACATCGTCGGGGCTACAAC 60.391 55.000 0.00 0.00 0.00 3.32
178 179 1.216977 CATCGTCGGGGCTACAACA 59.783 57.895 0.00 0.00 0.00 3.33
179 180 0.390603 CATCGTCGGGGCTACAACAA 60.391 55.000 0.00 0.00 0.00 2.83
180 181 0.322322 ATCGTCGGGGCTACAACAAA 59.678 50.000 0.00 0.00 0.00 2.83
181 182 0.106335 TCGTCGGGGCTACAACAAAA 59.894 50.000 0.00 0.00 0.00 2.44
182 183 0.945813 CGTCGGGGCTACAACAAAAA 59.054 50.000 0.00 0.00 0.00 1.94
183 184 1.069500 CGTCGGGGCTACAACAAAAAG 60.069 52.381 0.00 0.00 0.00 2.27
184 185 0.955905 TCGGGGCTACAACAAAAAGC 59.044 50.000 0.00 0.00 35.47 3.51
188 189 2.046283 GGCTACAACAAAAAGCCGTC 57.954 50.000 0.00 0.00 45.82 4.79
189 190 1.662026 GGCTACAACAAAAAGCCGTCG 60.662 52.381 0.00 0.00 45.82 5.12
190 191 1.662026 GCTACAACAAAAAGCCGTCGG 60.662 52.381 6.99 6.99 0.00 4.79
191 192 1.868498 CTACAACAAAAAGCCGTCGGA 59.132 47.619 17.49 0.00 0.00 4.55
192 193 0.661020 ACAACAAAAAGCCGTCGGAG 59.339 50.000 17.49 0.00 0.00 4.63
193 194 0.661020 CAACAAAAAGCCGTCGGAGT 59.339 50.000 17.49 0.00 0.00 3.85
194 195 1.064952 CAACAAAAAGCCGTCGGAGTT 59.935 47.619 17.49 4.27 0.00 3.01
195 196 0.661020 ACAAAAAGCCGTCGGAGTTG 59.339 50.000 17.49 14.20 0.00 3.16
196 197 0.660300 CAAAAAGCCGTCGGAGTTGC 60.660 55.000 17.49 0.00 0.00 4.17
197 198 1.098712 AAAAAGCCGTCGGAGTTGCA 61.099 50.000 17.49 0.00 0.00 4.08
198 199 1.098712 AAAAGCCGTCGGAGTTGCAA 61.099 50.000 17.49 0.00 0.00 4.08
199 200 1.782028 AAAGCCGTCGGAGTTGCAAC 61.782 55.000 22.17 22.17 0.00 4.17
200 201 4.072088 GCCGTCGGAGTTGCAACG 62.072 66.667 23.21 12.53 35.01 4.10
201 202 2.355363 CCGTCGGAGTTGCAACGA 60.355 61.111 23.21 14.74 37.31 3.85
202 203 2.372690 CCGTCGGAGTTGCAACGAG 61.373 63.158 23.21 17.63 37.30 4.18
203 204 2.853914 GTCGGAGTTGCAACGAGC 59.146 61.111 23.21 16.09 45.96 5.03
204 205 2.357034 TCGGAGTTGCAACGAGCC 60.357 61.111 23.21 22.32 44.83 4.70
205 206 3.777925 CGGAGTTGCAACGAGCCG 61.778 66.667 31.55 31.55 44.83 5.52
206 207 4.090057 GGAGTTGCAACGAGCCGC 62.090 66.667 23.21 9.84 44.83 6.53
207 208 4.090057 GAGTTGCAACGAGCCGCC 62.090 66.667 23.21 5.03 44.83 6.13
221 222 3.434319 CGCCGCCAGAGTTGCAAT 61.434 61.111 0.59 0.00 0.00 3.56
222 223 2.180017 GCCGCCAGAGTTGCAATG 59.820 61.111 0.59 0.00 0.00 2.82
223 224 2.334946 GCCGCCAGAGTTGCAATGA 61.335 57.895 0.59 0.00 0.00 2.57
224 225 1.865788 GCCGCCAGAGTTGCAATGAA 61.866 55.000 0.59 0.00 0.00 2.57
225 226 0.109597 CCGCCAGAGTTGCAATGAAC 60.110 55.000 0.59 0.00 0.00 3.18
226 227 0.109597 CGCCAGAGTTGCAATGAACC 60.110 55.000 0.59 0.00 0.00 3.62
227 228 0.109597 GCCAGAGTTGCAATGAACCG 60.110 55.000 0.59 0.00 0.00 4.44
228 229 0.109597 CCAGAGTTGCAATGAACCGC 60.110 55.000 0.59 0.00 0.00 5.68
229 230 0.877071 CAGAGTTGCAATGAACCGCT 59.123 50.000 0.59 0.00 0.00 5.52
230 231 0.877071 AGAGTTGCAATGAACCGCTG 59.123 50.000 0.59 0.00 0.00 5.18
231 232 0.593128 GAGTTGCAATGAACCGCTGT 59.407 50.000 0.59 0.00 0.00 4.40
232 233 0.311790 AGTTGCAATGAACCGCTGTG 59.688 50.000 0.59 0.00 0.00 3.66
233 234 0.664166 GTTGCAATGAACCGCTGTGG 60.664 55.000 0.59 5.54 46.41 4.17
234 235 1.804396 TTGCAATGAACCGCTGTGGG 61.804 55.000 12.58 0.00 44.64 4.61
235 236 2.993471 GCAATGAACCGCTGTGGGG 61.993 63.158 12.58 1.31 44.64 4.96
258 259 2.180017 GCGCTGCCATGGAAACTG 59.820 61.111 18.40 2.99 0.00 3.16
259 260 2.629656 GCGCTGCCATGGAAACTGT 61.630 57.895 18.40 0.00 0.00 3.55
260 261 1.959085 CGCTGCCATGGAAACTGTT 59.041 52.632 18.40 0.00 0.00 3.16
261 262 0.387622 CGCTGCCATGGAAACTGTTG 60.388 55.000 18.40 0.00 0.00 3.33
262 263 0.675633 GCTGCCATGGAAACTGTTGT 59.324 50.000 18.40 0.00 0.00 3.32
263 264 1.069049 GCTGCCATGGAAACTGTTGTT 59.931 47.619 18.40 0.00 38.16 2.83
264 265 2.746269 CTGCCATGGAAACTGTTGTTG 58.254 47.619 18.40 0.00 36.39 3.33
265 266 1.411977 TGCCATGGAAACTGTTGTTGG 59.588 47.619 18.40 0.77 36.39 3.77
266 267 1.412343 GCCATGGAAACTGTTGTTGGT 59.588 47.619 18.40 0.00 36.39 3.67
267 268 2.802774 GCCATGGAAACTGTTGTTGGTG 60.803 50.000 18.40 0.00 36.39 4.17
268 269 2.224018 CCATGGAAACTGTTGTTGGTGG 60.224 50.000 5.56 0.00 36.39 4.61
269 270 2.223803 TGGAAACTGTTGTTGGTGGT 57.776 45.000 0.00 0.00 36.39 4.16
270 271 1.821753 TGGAAACTGTTGTTGGTGGTG 59.178 47.619 0.00 0.00 36.39 4.17
271 272 1.470805 GGAAACTGTTGTTGGTGGTGC 60.471 52.381 0.00 0.00 36.39 5.01
272 273 1.476488 GAAACTGTTGTTGGTGGTGCT 59.524 47.619 0.00 0.00 36.39 4.40
273 274 0.817013 AACTGTTGTTGGTGGTGCTG 59.183 50.000 0.00 0.00 34.71 4.41
274 275 1.066257 CTGTTGTTGGTGGTGCTGC 59.934 57.895 0.00 0.00 0.00 5.25
275 276 2.354074 CTGTTGTTGGTGGTGCTGCC 62.354 60.000 0.00 0.00 37.90 4.85
276 277 2.043551 TTGTTGGTGGTGCTGCCA 60.044 55.556 0.00 0.00 46.95 4.92
296 297 4.925861 GGAGCTGCCCGATCCTGC 62.926 72.222 0.00 0.00 44.89 4.85
315 316 4.301505 GCAGGGAGCGTTTGATCA 57.698 55.556 0.00 0.00 30.14 2.92
316 317 2.093216 GCAGGGAGCGTTTGATCAG 58.907 57.895 0.00 0.00 30.14 2.90
317 318 0.391661 GCAGGGAGCGTTTGATCAGA 60.392 55.000 0.00 0.00 30.14 3.27
318 319 1.363744 CAGGGAGCGTTTGATCAGAC 58.636 55.000 6.31 6.31 30.14 3.51
319 320 0.108615 AGGGAGCGTTTGATCAGACG 60.109 55.000 28.83 28.83 41.19 4.18
320 321 1.084370 GGGAGCGTTTGATCAGACGG 61.084 60.000 32.09 18.27 39.04 4.79
321 322 1.696832 GGAGCGTTTGATCAGACGGC 61.697 60.000 32.09 24.91 39.04 5.68
322 323 0.737715 GAGCGTTTGATCAGACGGCT 60.738 55.000 32.09 28.08 39.04 5.52
323 324 0.320771 AGCGTTTGATCAGACGGCTT 60.321 50.000 32.09 15.52 39.04 4.35
324 325 1.067142 AGCGTTTGATCAGACGGCTTA 60.067 47.619 32.09 0.00 39.04 3.09
325 326 1.324736 GCGTTTGATCAGACGGCTTAG 59.675 52.381 32.09 10.68 39.04 2.18
326 327 1.927174 CGTTTGATCAGACGGCTTAGG 59.073 52.381 26.38 1.44 35.59 2.69
327 328 1.666189 GTTTGATCAGACGGCTTAGGC 59.334 52.381 0.00 0.00 37.82 3.93
328 329 1.195115 TTGATCAGACGGCTTAGGCT 58.805 50.000 3.89 0.00 38.73 4.58
338 339 2.246719 GGCTTAGGCTGACCATAGTG 57.753 55.000 0.00 0.00 39.06 2.74
339 340 1.202698 GGCTTAGGCTGACCATAGTGG 60.203 57.143 0.00 0.00 40.17 4.00
340 341 1.202698 GCTTAGGCTGACCATAGTGGG 60.203 57.143 0.00 0.00 37.38 4.61
341 342 1.417890 CTTAGGCTGACCATAGTGGGG 59.582 57.143 0.00 0.00 43.37 4.96
342 343 0.399949 TAGGCTGACCATAGTGGGGG 60.400 60.000 0.00 0.00 43.37 5.40
343 344 2.001269 GGCTGACCATAGTGGGGGT 61.001 63.158 0.52 0.00 43.37 4.95
344 345 0.693092 GGCTGACCATAGTGGGGGTA 60.693 60.000 0.52 0.00 43.37 3.69
345 346 1.209621 GCTGACCATAGTGGGGGTAA 58.790 55.000 0.52 0.00 43.37 2.85
346 347 1.134189 GCTGACCATAGTGGGGGTAAC 60.134 57.143 0.52 0.00 43.37 2.50
347 348 2.193127 CTGACCATAGTGGGGGTAACA 58.807 52.381 0.52 0.00 43.37 2.41
348 349 2.777692 CTGACCATAGTGGGGGTAACAT 59.222 50.000 0.52 0.00 43.37 2.71
349 350 3.971305 CTGACCATAGTGGGGGTAACATA 59.029 47.826 0.52 0.00 43.37 2.29
350 351 4.372588 TGACCATAGTGGGGGTAACATAA 58.627 43.478 0.52 0.00 43.37 1.90
351 352 4.410883 TGACCATAGTGGGGGTAACATAAG 59.589 45.833 0.52 0.00 43.37 1.73
352 353 4.377134 ACCATAGTGGGGGTAACATAAGT 58.623 43.478 0.52 0.00 43.37 2.24
353 354 5.540808 ACCATAGTGGGGGTAACATAAGTA 58.459 41.667 0.52 0.00 43.37 2.24
354 355 5.605488 ACCATAGTGGGGGTAACATAAGTAG 59.395 44.000 0.52 0.00 43.37 2.57
355 356 5.605488 CCATAGTGGGGGTAACATAAGTAGT 59.395 44.000 0.00 0.00 39.74 2.73
356 357 6.783977 CCATAGTGGGGGTAACATAAGTAGTA 59.216 42.308 0.00 0.00 39.74 1.82
357 358 7.456902 CCATAGTGGGGGTAACATAAGTAGTAT 59.543 40.741 0.00 0.00 39.74 2.12
358 359 6.990908 AGTGGGGGTAACATAAGTAGTATC 57.009 41.667 0.00 0.00 39.74 2.24
359 360 6.446451 AGTGGGGGTAACATAAGTAGTATCA 58.554 40.000 0.00 0.00 39.74 2.15
360 361 7.080353 AGTGGGGGTAACATAAGTAGTATCAT 58.920 38.462 0.00 0.00 39.74 2.45
361 362 7.016268 AGTGGGGGTAACATAAGTAGTATCATG 59.984 40.741 0.00 0.00 39.74 3.07
362 363 6.171213 GGGGGTAACATAAGTAGTATCATGC 58.829 44.000 0.00 0.00 39.74 4.06
363 364 6.239772 GGGGGTAACATAAGTAGTATCATGCA 60.240 42.308 0.00 0.00 39.74 3.96
364 365 6.649557 GGGGTAACATAAGTAGTATCATGCAC 59.350 42.308 0.00 0.00 39.74 4.57
365 366 7.442656 GGGTAACATAAGTAGTATCATGCACT 58.557 38.462 0.00 5.31 39.74 4.40
366 367 7.931948 GGGTAACATAAGTAGTATCATGCACTT 59.068 37.037 5.29 4.15 39.74 3.16
367 368 9.976511 GGTAACATAAGTAGTATCATGCACTTA 57.023 33.333 5.29 5.88 37.74 2.24
371 372 9.751542 ACATAAGTAGTATCATGCACTTAAGAC 57.248 33.333 10.09 1.24 37.12 3.01
372 373 9.973450 CATAAGTAGTATCATGCACTTAAGACT 57.027 33.333 10.09 1.99 37.12 3.24
374 375 7.889873 AGTAGTATCATGCACTTAAGACTCT 57.110 36.000 10.09 0.00 0.00 3.24
375 376 7.936584 AGTAGTATCATGCACTTAAGACTCTC 58.063 38.462 10.09 0.00 0.00 3.20
376 377 6.782082 AGTATCATGCACTTAAGACTCTCA 57.218 37.500 10.09 0.00 0.00 3.27
377 378 7.175347 AGTATCATGCACTTAAGACTCTCAA 57.825 36.000 10.09 0.00 0.00 3.02
378 379 7.615403 AGTATCATGCACTTAAGACTCTCAAA 58.385 34.615 10.09 0.00 0.00 2.69
379 380 6.734104 ATCATGCACTTAAGACTCTCAAAC 57.266 37.500 10.09 0.00 0.00 2.93
380 381 5.610398 TCATGCACTTAAGACTCTCAAACA 58.390 37.500 10.09 0.00 0.00 2.83
381 382 6.233434 TCATGCACTTAAGACTCTCAAACAT 58.767 36.000 10.09 0.00 0.00 2.71
382 383 5.929697 TGCACTTAAGACTCTCAAACATG 57.070 39.130 10.09 0.00 0.00 3.21
383 384 4.214119 TGCACTTAAGACTCTCAAACATGC 59.786 41.667 10.09 4.48 0.00 4.06
384 385 4.453819 GCACTTAAGACTCTCAAACATGCT 59.546 41.667 10.09 0.00 0.00 3.79
385 386 5.049129 GCACTTAAGACTCTCAAACATGCTT 60.049 40.000 10.09 0.00 0.00 3.91
386 387 6.147821 GCACTTAAGACTCTCAAACATGCTTA 59.852 38.462 10.09 0.00 0.00 3.09
387 388 7.148340 GCACTTAAGACTCTCAAACATGCTTAT 60.148 37.037 10.09 0.00 0.00 1.73
388 389 8.173775 CACTTAAGACTCTCAAACATGCTTATG 58.826 37.037 10.09 0.00 0.00 1.90
389 390 7.880195 ACTTAAGACTCTCAAACATGCTTATGT 59.120 33.333 10.09 0.00 36.10 2.29
390 391 9.371136 CTTAAGACTCTCAAACATGCTTATGTA 57.629 33.333 0.00 0.00 33.81 2.29
391 392 9.719355 TTAAGACTCTCAAACATGCTTATGTAA 57.281 29.630 0.00 0.00 33.81 2.41
392 393 7.602517 AGACTCTCAAACATGCTTATGTAAC 57.397 36.000 0.00 0.00 33.81 2.50
393 394 7.161404 AGACTCTCAAACATGCTTATGTAACA 58.839 34.615 0.00 0.00 33.81 2.41
394 395 7.332926 AGACTCTCAAACATGCTTATGTAACAG 59.667 37.037 0.00 0.00 33.81 3.16
395 396 7.161404 ACTCTCAAACATGCTTATGTAACAGA 58.839 34.615 0.00 0.00 33.81 3.41
396 397 7.118390 ACTCTCAAACATGCTTATGTAACAGAC 59.882 37.037 0.00 0.00 33.81 3.51
397 398 6.934083 TCTCAAACATGCTTATGTAACAGACA 59.066 34.615 0.00 0.00 43.97 3.41
398 399 7.443879 TCTCAAACATGCTTATGTAACAGACAA 59.556 33.333 0.00 0.00 42.78 3.18
399 400 8.109705 TCAAACATGCTTATGTAACAGACAAT 57.890 30.769 0.00 0.00 42.78 2.71
400 401 8.575589 TCAAACATGCTTATGTAACAGACAATT 58.424 29.630 0.00 0.00 42.78 2.32
401 402 9.838975 CAAACATGCTTATGTAACAGACAATTA 57.161 29.630 0.00 0.00 42.78 1.40
456 457 8.073768 ACCGTAACATAATAAATGTTATGCTGC 58.926 33.333 18.32 0.00 44.22 5.25
457 458 7.537306 CCGTAACATAATAAATGTTATGCTGCC 59.463 37.037 18.32 4.98 44.22 4.85
458 459 8.073167 CGTAACATAATAAATGTTATGCTGCCA 58.927 33.333 14.00 0.00 43.63 4.92
459 460 9.180678 GTAACATAATAAATGTTATGCTGCCAC 57.819 33.333 12.30 0.00 43.63 5.01
460 461 7.587037 ACATAATAAATGTTATGCTGCCACT 57.413 32.000 9.10 0.00 42.90 4.00
461 462 8.690203 ACATAATAAATGTTATGCTGCCACTA 57.310 30.769 9.10 0.00 42.90 2.74
462 463 9.300681 ACATAATAAATGTTATGCTGCCACTAT 57.699 29.630 9.10 0.00 42.90 2.12
463 464 9.563898 CATAATAAATGTTATGCTGCCACTATG 57.436 33.333 0.00 0.00 35.84 2.23
464 465 7.587037 AATAAATGTTATGCTGCCACTATGT 57.413 32.000 0.00 0.00 0.00 2.29
465 466 5.505173 AAATGTTATGCTGCCACTATGTC 57.495 39.130 0.00 0.00 0.00 3.06
466 467 3.625649 TGTTATGCTGCCACTATGTCA 57.374 42.857 0.00 0.00 0.00 3.58
467 468 4.155063 TGTTATGCTGCCACTATGTCAT 57.845 40.909 0.00 0.00 0.00 3.06
468 469 3.878699 TGTTATGCTGCCACTATGTCATG 59.121 43.478 0.00 0.00 0.00 3.07
469 470 2.723322 ATGCTGCCACTATGTCATGT 57.277 45.000 0.00 0.00 0.00 3.21
470 471 3.843893 ATGCTGCCACTATGTCATGTA 57.156 42.857 0.00 0.00 0.00 2.29
471 472 3.843893 TGCTGCCACTATGTCATGTAT 57.156 42.857 0.00 0.00 0.00 2.29
472 473 3.469739 TGCTGCCACTATGTCATGTATG 58.530 45.455 0.00 0.00 0.00 2.39
473 474 3.134442 TGCTGCCACTATGTCATGTATGA 59.866 43.478 0.00 0.00 0.00 2.15
474 475 4.202388 TGCTGCCACTATGTCATGTATGAT 60.202 41.667 0.00 0.00 39.30 2.45
475 476 5.011943 TGCTGCCACTATGTCATGTATGATA 59.988 40.000 0.00 0.00 39.30 2.15
476 477 5.934043 GCTGCCACTATGTCATGTATGATAA 59.066 40.000 0.00 0.00 39.30 1.75
477 478 6.596888 GCTGCCACTATGTCATGTATGATAAT 59.403 38.462 0.00 0.00 39.30 1.28
478 479 7.765819 GCTGCCACTATGTCATGTATGATAATA 59.234 37.037 0.00 0.34 39.30 0.98
479 480 9.657419 CTGCCACTATGTCATGTATGATAATAA 57.343 33.333 0.00 0.00 39.30 1.40
586 587 8.554490 AATATATGATACTCCCCACTATGACC 57.446 38.462 0.00 0.00 0.00 4.02
587 588 3.699025 TGATACTCCCCACTATGACCA 57.301 47.619 0.00 0.00 0.00 4.02
588 589 3.576861 TGATACTCCCCACTATGACCAG 58.423 50.000 0.00 0.00 0.00 4.00
589 590 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
590 591 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
591 592 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
592 593 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
593 594 1.009060 TCCCCACTATGACCAGCCTTA 59.991 52.381 0.00 0.00 0.00 2.69
594 595 1.417890 CCCCACTATGACCAGCCTTAG 59.582 57.143 0.00 0.00 0.00 2.18
595 596 1.417890 CCCACTATGACCAGCCTTAGG 59.582 57.143 0.00 0.00 0.00 2.69
596 597 1.417890 CCACTATGACCAGCCTTAGGG 59.582 57.143 0.00 0.00 0.00 3.53
597 598 2.398588 CACTATGACCAGCCTTAGGGA 58.601 52.381 0.00 0.00 33.58 4.20
598 599 2.103263 CACTATGACCAGCCTTAGGGAC 59.897 54.545 0.00 0.00 33.58 4.46
599 600 1.341531 CTATGACCAGCCTTAGGGACG 59.658 57.143 0.00 0.00 33.58 4.79
600 601 1.338136 ATGACCAGCCTTAGGGACGG 61.338 60.000 0.00 0.00 33.58 4.79
609 610 2.610833 GCCTTAGGGACGGTTTATTTCG 59.389 50.000 0.00 0.00 33.58 3.46
611 612 3.118665 CCTTAGGGACGGTTTATTTCGGA 60.119 47.826 0.00 0.00 33.58 4.55
622 623 8.047413 ACGGTTTATTTCGGACTAAAATCATT 57.953 30.769 0.00 0.00 0.00 2.57
624 625 8.395633 CGGTTTATTTCGGACTAAAATCATTCT 58.604 33.333 0.00 0.00 0.00 2.40
625 626 9.503427 GGTTTATTTCGGACTAAAATCATTCTG 57.497 33.333 0.00 0.00 0.00 3.02
627 628 8.506168 TTATTTCGGACTAAAATCATTCTGCT 57.494 30.769 0.00 0.00 0.00 4.24
629 630 5.084818 TCGGACTAAAATCATTCTGCTGA 57.915 39.130 0.00 0.00 0.00 4.26
630 631 4.870426 TCGGACTAAAATCATTCTGCTGAC 59.130 41.667 0.00 0.00 0.00 3.51
631 632 4.872691 CGGACTAAAATCATTCTGCTGACT 59.127 41.667 0.00 0.00 0.00 3.41
632 633 5.220548 CGGACTAAAATCATTCTGCTGACTG 60.221 44.000 4.79 4.79 0.00 3.51
633 634 5.065731 GGACTAAAATCATTCTGCTGACTGG 59.934 44.000 10.38 0.00 0.00 4.00
635 636 6.711277 ACTAAAATCATTCTGCTGACTGGTA 58.289 36.000 10.38 0.00 0.00 3.25
640 641 1.342074 TTCTGCTGACTGGTAGCACT 58.658 50.000 4.32 0.00 45.52 4.40
641 642 0.605083 TCTGCTGACTGGTAGCACTG 59.395 55.000 4.32 0.00 45.52 3.66
642 643 0.390866 CTGCTGACTGGTAGCACTGG 60.391 60.000 4.32 0.00 45.52 4.00
643 644 1.743252 GCTGACTGGTAGCACTGGC 60.743 63.158 0.00 0.00 40.81 4.85
644 645 1.078848 CTGACTGGTAGCACTGGCC 60.079 63.158 0.00 0.00 42.56 5.36
645 646 1.830587 CTGACTGGTAGCACTGGCCA 61.831 60.000 4.71 4.71 42.56 5.36
646 647 1.200760 TGACTGGTAGCACTGGCCAT 61.201 55.000 5.51 0.00 42.56 4.40
647 648 0.830648 GACTGGTAGCACTGGCCATA 59.169 55.000 5.51 0.00 42.56 2.74
648 649 1.417890 GACTGGTAGCACTGGCCATAT 59.582 52.381 5.51 0.00 42.56 1.78
649 650 2.632996 GACTGGTAGCACTGGCCATATA 59.367 50.000 5.51 0.00 42.56 0.86
652 653 4.104738 ACTGGTAGCACTGGCCATATAATT 59.895 41.667 5.51 0.00 42.56 1.40
656 657 7.923461 TGGTAGCACTGGCCATATAATTATTA 58.077 34.615 5.51 0.00 42.56 0.98
702 703 2.281484 AACGGCTCCGCAACACAT 60.281 55.556 8.41 0.00 44.19 3.21
733 734 2.892640 CTCGCCGATCCACTCCAA 59.107 61.111 0.00 0.00 0.00 3.53
734 735 1.218047 CTCGCCGATCCACTCCAAA 59.782 57.895 0.00 0.00 0.00 3.28
742 743 3.763897 CCGATCCACTCCAAATTTCCTTT 59.236 43.478 0.00 0.00 0.00 3.11
743 744 4.380867 CCGATCCACTCCAAATTTCCTTTG 60.381 45.833 0.00 0.00 43.27 2.77
744 745 4.498241 GATCCACTCCAAATTTCCTTTGC 58.502 43.478 0.00 0.00 42.46 3.68
745 746 3.575805 TCCACTCCAAATTTCCTTTGCT 58.424 40.909 0.00 0.00 42.46 3.91
746 747 3.573967 TCCACTCCAAATTTCCTTTGCTC 59.426 43.478 0.00 0.00 42.46 4.26
1020 1024 3.068691 CACCTCTTCTCCGGCGGA 61.069 66.667 29.14 29.14 0.00 5.54
1146 1150 3.024356 TCCGCCTCCTCCTCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
1605 1619 0.253327 AATCCCTCTCCAAGGTTCGC 59.747 55.000 0.00 0.00 44.56 4.70
1617 1631 2.586357 GTTCGCCCAGATCTCCGC 60.586 66.667 0.00 0.00 0.00 5.54
1969 1983 2.719739 CTAGGCTATGCATGGAATGGG 58.280 52.381 15.09 0.00 46.86 4.00
2055 2069 6.859017 TGTTTGATCGCTGTTGTCTATACTA 58.141 36.000 0.00 0.00 0.00 1.82
2066 2080 4.553756 TGTCTATACTAGAGTGCTTGCG 57.446 45.455 0.00 0.00 35.04 4.85
2386 2401 6.024049 GCTAAAGGATCACAAACAGAATTCG 58.976 40.000 0.00 0.00 0.00 3.34
2393 2408 4.661125 TCACAAACAGAATTCGCATATGC 58.339 39.130 18.08 18.08 37.78 3.14
2707 2722 7.715265 TGACAAGTTTACTCATCAGAACTTC 57.285 36.000 0.00 0.00 39.55 3.01
2893 2908 2.038387 ATGCCGTGTTATGACCTTCC 57.962 50.000 0.00 0.00 0.00 3.46
3040 3055 8.700722 TTATTGAATGCGTTTTCATGCTATTT 57.299 26.923 0.00 0.00 35.64 1.40
3041 3056 9.794685 TTATTGAATGCGTTTTCATGCTATTTA 57.205 25.926 0.00 0.00 35.64 1.40
3105 3123 3.333029 TGCTTTCTGCTATACACTGCA 57.667 42.857 0.00 0.00 43.37 4.41
3349 3368 1.831106 TCACCAACCTGCGATGTAGAT 59.169 47.619 0.00 0.00 0.00 1.98
4500 4519 3.416156 GAAGTGCTTTTGGGAGATGTCT 58.584 45.455 0.00 0.00 0.00 3.41
4542 4561 6.454795 ACAATTTTATCACATTTTGAGCCGT 58.545 32.000 0.00 0.00 37.77 5.68
5118 5137 2.802719 TCAAACCTATTGGGGAAGCAC 58.197 47.619 0.00 0.00 40.03 4.40
5148 5167 8.345565 CAATTGTTAAGGAAGGAGGATATTTCG 58.654 37.037 0.00 0.00 0.00 3.46
5253 5272 2.294074 GCATTTATAGTTGCGGGGACA 58.706 47.619 0.00 0.00 0.00 4.02
5573 5592 0.535335 TGTTGGATCGTAGGCTGGTC 59.465 55.000 0.00 0.00 0.00 4.02
5579 5598 2.658321 ATCGTAGGCTGGTCCGGGAT 62.658 60.000 0.00 0.00 40.77 3.85
5991 6010 3.972133 TGTACAAGTATCGGGGAAGAGA 58.028 45.455 0.00 0.00 0.00 3.10
6068 6087 4.020662 ACCTCTCTGAACCTCTTGAATGAC 60.021 45.833 0.00 0.00 0.00 3.06
6207 6226 6.796426 TCACCAGAAGAATAGTATGTCGAAG 58.204 40.000 0.00 0.00 0.00 3.79
6265 6284 3.707102 AGGATCTACTTGGAGTAGTTGGC 59.293 47.826 13.20 3.99 46.31 4.52
6360 6379 2.860735 GGGATTGAAGTTGATCGTCGAG 59.139 50.000 0.00 0.00 0.00 4.04
6362 6381 3.548268 GGATTGAAGTTGATCGTCGAGAC 59.452 47.826 0.00 0.00 0.00 3.36
6470 6489 8.415950 TTTTCTCCTTGGTGATTATTGCTTAA 57.584 30.769 0.00 0.00 0.00 1.85
6503 6522 2.439156 AGGCAATTCGGAGCAGGC 60.439 61.111 0.00 0.00 0.00 4.85
6720 6739 6.595716 AGACAGTTTAGGTACATGATTCTTGC 59.404 38.462 0.00 0.00 0.00 4.01
6835 6877 2.812836 TACTGATACTGGGACGTGGA 57.187 50.000 0.00 0.00 0.00 4.02
6850 6957 2.440247 GGACGGGGGCTTTCATGG 60.440 66.667 0.00 0.00 0.00 3.66
6941 7097 6.398918 ACTCATTTTGCTTCGTATGTAGTCT 58.601 36.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.545526 CACGCTTCAACACAACTCTGAT 59.454 45.455 0.00 0.00 0.00 2.90
2 3 1.003545 CCACGCTTCAACACAACTCTG 60.004 52.381 0.00 0.00 0.00 3.35
3 4 1.299541 CCACGCTTCAACACAACTCT 58.700 50.000 0.00 0.00 0.00 3.24
4 5 0.317020 GCCACGCTTCAACACAACTC 60.317 55.000 0.00 0.00 0.00 3.01
5 6 1.727467 GCCACGCTTCAACACAACT 59.273 52.632 0.00 0.00 0.00 3.16
6 7 1.654137 CGCCACGCTTCAACACAAC 60.654 57.895 0.00 0.00 0.00 3.32
7 8 2.712539 CGCCACGCTTCAACACAA 59.287 55.556 0.00 0.00 0.00 3.33
8 9 3.276091 CCGCCACGCTTCAACACA 61.276 61.111 0.00 0.00 0.00 3.72
9 10 4.683334 GCCGCCACGCTTCAACAC 62.683 66.667 0.00 0.00 0.00 3.32
33 34 3.818121 TAGCCTGCAACACCGCGTT 62.818 57.895 4.92 0.00 38.83 4.84
34 35 4.308458 TAGCCTGCAACACCGCGT 62.308 61.111 4.92 0.00 33.35 6.01
35 36 3.490759 CTAGCCTGCAACACCGCG 61.491 66.667 0.00 0.00 33.35 6.46
36 37 3.804193 GCTAGCCTGCAACACCGC 61.804 66.667 2.29 0.00 0.00 5.68
37 38 3.127533 GGCTAGCCTGCAACACCG 61.128 66.667 27.17 0.00 34.04 4.94
38 39 3.127533 CGGCTAGCCTGCAACACC 61.128 66.667 30.55 1.87 34.04 4.16
39 40 3.127533 CCGGCTAGCCTGCAACAC 61.128 66.667 30.55 2.63 34.04 3.32
40 41 3.636231 ACCGGCTAGCCTGCAACA 61.636 61.111 30.55 0.00 34.04 3.33
41 42 3.127533 CACCGGCTAGCCTGCAAC 61.128 66.667 30.55 4.19 34.04 4.17
42 43 4.408821 CCACCGGCTAGCCTGCAA 62.409 66.667 30.55 0.00 34.04 4.08
61 62 3.429141 CTTCACCGGCTGCTGCAG 61.429 66.667 24.80 24.80 41.91 4.41
68 69 2.249413 CTCCATCAGCTTCACCGGCT 62.249 60.000 0.00 0.00 41.07 5.52
69 70 1.817099 CTCCATCAGCTTCACCGGC 60.817 63.158 0.00 0.00 0.00 6.13
70 71 1.817099 GCTCCATCAGCTTCACCGG 60.817 63.158 0.00 0.00 45.83 5.28
71 72 3.805267 GCTCCATCAGCTTCACCG 58.195 61.111 0.00 0.00 45.83 4.94
79 80 3.104602 CTTTGGCGCGCTCCATCAG 62.105 63.158 32.29 15.28 35.77 2.90
80 81 3.126879 CTTTGGCGCGCTCCATCA 61.127 61.111 32.29 17.41 35.77 3.07
81 82 2.690778 AACTTTGGCGCGCTCCATC 61.691 57.895 32.29 14.61 35.77 3.51
82 83 2.672996 AACTTTGGCGCGCTCCAT 60.673 55.556 32.29 10.39 35.77 3.41
83 84 3.659092 CAACTTTGGCGCGCTCCA 61.659 61.111 32.29 16.70 0.00 3.86
91 92 0.039256 TGCTTCATCGCAACTTTGGC 60.039 50.000 0.00 0.00 36.89 4.52
92 93 2.523015 GATGCTTCATCGCAACTTTGG 58.477 47.619 0.00 0.00 44.06 3.28
102 103 2.189499 GCCCCACCGATGCTTCATC 61.189 63.158 0.08 0.00 37.50 2.92
103 104 2.124151 GCCCCACCGATGCTTCAT 60.124 61.111 0.08 0.00 0.00 2.57
104 105 3.329889 AGCCCCACCGATGCTTCA 61.330 61.111 0.08 0.00 29.17 3.02
105 106 2.825836 CAGCCCCACCGATGCTTC 60.826 66.667 0.00 0.00 31.77 3.86
113 114 3.971702 AACTCTGGCAGCCCCACC 61.972 66.667 9.64 0.00 39.18 4.61
114 115 2.674380 CAACTCTGGCAGCCCCAC 60.674 66.667 9.64 0.00 39.18 4.61
115 116 4.666253 GCAACTCTGGCAGCCCCA 62.666 66.667 9.64 0.00 42.79 4.96
116 117 4.666253 TGCAACTCTGGCAGCCCC 62.666 66.667 9.64 0.00 36.11 5.80
121 122 1.168407 GCTTCACTGCAACTCTGGCA 61.168 55.000 0.00 0.00 39.32 4.92
122 123 1.578423 GCTTCACTGCAACTCTGGC 59.422 57.895 0.00 0.00 0.00 4.85
123 124 1.864862 CGCTTCACTGCAACTCTGG 59.135 57.895 0.00 0.00 0.00 3.86
124 125 1.206072 GCGCTTCACTGCAACTCTG 59.794 57.895 0.00 0.00 0.00 3.35
125 126 2.313172 CGCGCTTCACTGCAACTCT 61.313 57.895 5.56 0.00 0.00 3.24
126 127 2.171940 CGCGCTTCACTGCAACTC 59.828 61.111 5.56 0.00 0.00 3.01
127 128 4.017877 GCGCGCTTCACTGCAACT 62.018 61.111 26.67 0.00 0.00 3.16
141 142 3.565910 TTTCATTGCAACCCCGCGC 62.566 57.895 0.00 0.00 33.35 6.86
142 143 1.732683 GTTTCATTGCAACCCCGCG 60.733 57.895 0.00 0.00 33.35 6.46
143 144 0.037419 ATGTTTCATTGCAACCCCGC 60.037 50.000 0.00 0.00 0.00 6.13
144 145 1.732077 CGATGTTTCATTGCAACCCCG 60.732 52.381 0.00 0.00 0.00 5.73
145 146 1.272212 ACGATGTTTCATTGCAACCCC 59.728 47.619 0.00 0.00 0.00 4.95
146 147 2.595386 GACGATGTTTCATTGCAACCC 58.405 47.619 0.00 0.00 0.00 4.11
147 148 2.241722 CGACGATGTTTCATTGCAACC 58.758 47.619 0.00 0.00 0.00 3.77
148 149 2.241722 CCGACGATGTTTCATTGCAAC 58.758 47.619 0.00 0.00 0.00 4.17
149 150 1.198867 CCCGACGATGTTTCATTGCAA 59.801 47.619 0.00 0.00 0.00 4.08
150 151 0.801872 CCCGACGATGTTTCATTGCA 59.198 50.000 0.00 0.00 0.00 4.08
151 152 0.098728 CCCCGACGATGTTTCATTGC 59.901 55.000 0.00 0.00 0.00 3.56
152 153 0.098728 GCCCCGACGATGTTTCATTG 59.901 55.000 0.00 0.00 0.00 2.82
153 154 0.035439 AGCCCCGACGATGTTTCATT 60.035 50.000 0.00 0.00 0.00 2.57
154 155 0.828022 TAGCCCCGACGATGTTTCAT 59.172 50.000 0.00 0.00 0.00 2.57
155 156 0.108520 GTAGCCCCGACGATGTTTCA 60.109 55.000 0.00 0.00 0.00 2.69
156 157 0.108520 TGTAGCCCCGACGATGTTTC 60.109 55.000 0.00 0.00 0.00 2.78
157 158 0.322322 TTGTAGCCCCGACGATGTTT 59.678 50.000 0.00 0.00 0.00 2.83
158 159 0.390735 GTTGTAGCCCCGACGATGTT 60.391 55.000 0.00 0.00 0.00 2.71
159 160 1.217244 GTTGTAGCCCCGACGATGT 59.783 57.895 0.00 0.00 0.00 3.06
160 161 0.390603 TTGTTGTAGCCCCGACGATG 60.391 55.000 0.00 0.00 0.00 3.84
161 162 0.322322 TTTGTTGTAGCCCCGACGAT 59.678 50.000 0.00 0.00 0.00 3.73
162 163 0.106335 TTTTGTTGTAGCCCCGACGA 59.894 50.000 0.00 0.00 0.00 4.20
163 164 0.945813 TTTTTGTTGTAGCCCCGACG 59.054 50.000 0.00 0.00 0.00 5.12
164 165 1.335597 GCTTTTTGTTGTAGCCCCGAC 60.336 52.381 0.00 0.00 0.00 4.79
165 166 0.955905 GCTTTTTGTTGTAGCCCCGA 59.044 50.000 0.00 0.00 0.00 5.14
166 167 0.038618 GGCTTTTTGTTGTAGCCCCG 60.039 55.000 0.00 0.00 46.94 5.73
167 168 3.906660 GGCTTTTTGTTGTAGCCCC 57.093 52.632 0.00 0.00 46.94 5.80
170 171 1.662026 CCGACGGCTTTTTGTTGTAGC 60.662 52.381 0.00 0.00 0.00 3.58
171 172 1.868498 TCCGACGGCTTTTTGTTGTAG 59.132 47.619 9.66 0.00 0.00 2.74
172 173 1.868498 CTCCGACGGCTTTTTGTTGTA 59.132 47.619 9.66 0.00 0.00 2.41
173 174 0.661020 CTCCGACGGCTTTTTGTTGT 59.339 50.000 9.66 0.00 0.00 3.32
174 175 0.661020 ACTCCGACGGCTTTTTGTTG 59.339 50.000 9.66 0.00 0.00 3.33
175 176 1.064952 CAACTCCGACGGCTTTTTGTT 59.935 47.619 9.66 4.44 0.00 2.83
176 177 0.661020 CAACTCCGACGGCTTTTTGT 59.339 50.000 9.66 0.00 0.00 2.83
177 178 0.660300 GCAACTCCGACGGCTTTTTG 60.660 55.000 9.66 10.19 0.00 2.44
178 179 1.098712 TGCAACTCCGACGGCTTTTT 61.099 50.000 9.66 0.00 0.00 1.94
179 180 1.098712 TTGCAACTCCGACGGCTTTT 61.099 50.000 9.66 0.00 0.00 2.27
180 181 1.525077 TTGCAACTCCGACGGCTTT 60.525 52.632 9.66 1.02 0.00 3.51
181 182 2.110213 TTGCAACTCCGACGGCTT 59.890 55.556 9.66 0.00 0.00 4.35
182 183 2.665185 GTTGCAACTCCGACGGCT 60.665 61.111 22.36 0.00 0.00 5.52
183 184 4.072088 CGTTGCAACTCCGACGGC 62.072 66.667 26.09 0.00 38.60 5.68
184 185 2.355363 TCGTTGCAACTCCGACGG 60.355 61.111 26.09 7.84 41.70 4.79
185 186 3.000080 GCTCGTTGCAACTCCGACG 62.000 63.158 26.09 13.70 42.52 5.12
186 187 2.668280 GGCTCGTTGCAACTCCGAC 61.668 63.158 26.09 13.04 45.15 4.79
187 188 2.357034 GGCTCGTTGCAACTCCGA 60.357 61.111 26.09 17.65 45.15 4.55
188 189 3.777925 CGGCTCGTTGCAACTCCG 61.778 66.667 27.65 27.65 45.15 4.63
189 190 4.090057 GCGGCTCGTTGCAACTCC 62.090 66.667 26.09 21.06 45.15 3.85
190 191 4.090057 GGCGGCTCGTTGCAACTC 62.090 66.667 26.09 14.82 45.15 3.01
204 205 3.434319 ATTGCAACTCTGGCGGCG 61.434 61.111 0.00 0.51 0.00 6.46
205 206 1.865788 TTCATTGCAACTCTGGCGGC 61.866 55.000 0.00 0.00 0.00 6.53
206 207 0.109597 GTTCATTGCAACTCTGGCGG 60.110 55.000 0.00 0.00 0.00 6.13
207 208 0.109597 GGTTCATTGCAACTCTGGCG 60.110 55.000 0.00 0.00 0.00 5.69
208 209 0.109597 CGGTTCATTGCAACTCTGGC 60.110 55.000 0.00 0.00 0.00 4.85
209 210 0.109597 GCGGTTCATTGCAACTCTGG 60.110 55.000 0.00 0.00 0.00 3.86
210 211 0.877071 AGCGGTTCATTGCAACTCTG 59.123 50.000 0.00 0.00 0.00 3.35
211 212 0.877071 CAGCGGTTCATTGCAACTCT 59.123 50.000 0.00 0.00 0.00 3.24
212 213 0.593128 ACAGCGGTTCATTGCAACTC 59.407 50.000 0.00 0.00 0.00 3.01
213 214 0.311790 CACAGCGGTTCATTGCAACT 59.688 50.000 0.00 0.00 0.00 3.16
214 215 0.664166 CCACAGCGGTTCATTGCAAC 60.664 55.000 0.00 0.00 0.00 4.17
215 216 1.659233 CCACAGCGGTTCATTGCAA 59.341 52.632 0.00 0.00 0.00 4.08
216 217 2.267351 CCCACAGCGGTTCATTGCA 61.267 57.895 0.00 0.00 0.00 4.08
217 218 2.568090 CCCACAGCGGTTCATTGC 59.432 61.111 0.00 0.00 0.00 3.56
218 219 2.342650 CCCCCACAGCGGTTCATTG 61.343 63.158 0.00 0.00 0.00 2.82
219 220 2.035626 CCCCCACAGCGGTTCATT 59.964 61.111 0.00 0.00 0.00 2.57
220 221 4.740822 GCCCCCACAGCGGTTCAT 62.741 66.667 0.00 0.00 0.00 2.57
241 242 2.146073 AACAGTTTCCATGGCAGCGC 62.146 55.000 6.96 0.00 0.00 5.92
242 243 0.387622 CAACAGTTTCCATGGCAGCG 60.388 55.000 6.96 0.00 0.00 5.18
243 244 0.675633 ACAACAGTTTCCATGGCAGC 59.324 50.000 6.96 0.00 0.00 5.25
244 245 2.546373 CCAACAACAGTTTCCATGGCAG 60.546 50.000 6.96 0.00 0.00 4.85
245 246 1.411977 CCAACAACAGTTTCCATGGCA 59.588 47.619 6.96 0.00 0.00 4.92
246 247 1.412343 ACCAACAACAGTTTCCATGGC 59.588 47.619 6.96 0.00 0.00 4.40
247 248 2.224018 CCACCAACAACAGTTTCCATGG 60.224 50.000 4.97 4.97 0.00 3.66
248 249 2.430332 ACCACCAACAACAGTTTCCATG 59.570 45.455 0.00 0.00 0.00 3.66
249 250 2.430332 CACCACCAACAACAGTTTCCAT 59.570 45.455 0.00 0.00 0.00 3.41
250 251 1.821753 CACCACCAACAACAGTTTCCA 59.178 47.619 0.00 0.00 0.00 3.53
251 252 1.470805 GCACCACCAACAACAGTTTCC 60.471 52.381 0.00 0.00 0.00 3.13
252 253 1.476488 AGCACCACCAACAACAGTTTC 59.524 47.619 0.00 0.00 0.00 2.78
253 254 1.204467 CAGCACCACCAACAACAGTTT 59.796 47.619 0.00 0.00 0.00 2.66
254 255 0.817013 CAGCACCACCAACAACAGTT 59.183 50.000 0.00 0.00 0.00 3.16
255 256 1.666209 GCAGCACCACCAACAACAGT 61.666 55.000 0.00 0.00 0.00 3.55
256 257 1.066257 GCAGCACCACCAACAACAG 59.934 57.895 0.00 0.00 0.00 3.16
257 258 2.422231 GGCAGCACCACCAACAACA 61.422 57.895 0.00 0.00 38.86 3.33
258 259 2.417097 GGCAGCACCACCAACAAC 59.583 61.111 0.00 0.00 38.86 3.32
259 260 2.043551 TGGCAGCACCACCAACAA 60.044 55.556 0.00 0.00 46.36 2.83
267 268 4.437587 AGCTCCCATGGCAGCACC 62.438 66.667 29.29 0.03 38.18 5.01
268 269 3.138798 CAGCTCCCATGGCAGCAC 61.139 66.667 29.29 0.84 38.18 4.40
279 280 4.925861 GCAGGATCGGGCAGCTCC 62.926 72.222 0.00 0.00 35.42 4.70
296 297 2.436646 ATCAAACGCTCCCTGCCG 60.437 61.111 0.00 0.00 38.78 5.69
297 298 1.372087 CTGATCAAACGCTCCCTGCC 61.372 60.000 0.00 0.00 38.78 4.85
298 299 0.391661 TCTGATCAAACGCTCCCTGC 60.392 55.000 0.00 0.00 38.57 4.85
299 300 1.363744 GTCTGATCAAACGCTCCCTG 58.636 55.000 0.00 0.00 0.00 4.45
300 301 0.108615 CGTCTGATCAAACGCTCCCT 60.109 55.000 8.90 0.00 31.48 4.20
301 302 1.084370 CCGTCTGATCAAACGCTCCC 61.084 60.000 16.12 0.00 37.56 4.30
302 303 1.696832 GCCGTCTGATCAAACGCTCC 61.697 60.000 16.12 3.02 37.56 4.70
303 304 0.737715 AGCCGTCTGATCAAACGCTC 60.738 55.000 16.12 9.60 37.56 5.03
304 305 0.320771 AAGCCGTCTGATCAAACGCT 60.321 50.000 16.12 13.29 37.56 5.07
305 306 1.324736 CTAAGCCGTCTGATCAAACGC 59.675 52.381 16.12 11.30 37.56 4.84
306 307 1.927174 CCTAAGCCGTCTGATCAAACG 59.073 52.381 14.66 14.66 38.58 3.60
307 308 1.666189 GCCTAAGCCGTCTGATCAAAC 59.334 52.381 0.00 0.00 0.00 2.93
308 309 1.555075 AGCCTAAGCCGTCTGATCAAA 59.445 47.619 0.00 0.00 41.25 2.69
309 310 1.134699 CAGCCTAAGCCGTCTGATCAA 60.135 52.381 0.00 0.00 41.25 2.57
310 311 0.461548 CAGCCTAAGCCGTCTGATCA 59.538 55.000 0.00 0.00 41.25 2.92
311 312 0.747255 TCAGCCTAAGCCGTCTGATC 59.253 55.000 0.00 0.00 41.25 2.92
312 313 0.461961 GTCAGCCTAAGCCGTCTGAT 59.538 55.000 0.00 0.00 41.25 2.90
313 314 1.605058 GGTCAGCCTAAGCCGTCTGA 61.605 60.000 0.00 0.00 41.25 3.27
314 315 1.153549 GGTCAGCCTAAGCCGTCTG 60.154 63.158 0.00 0.00 41.25 3.51
315 316 0.978146 ATGGTCAGCCTAAGCCGTCT 60.978 55.000 0.00 0.00 41.25 4.18
316 317 0.750850 TATGGTCAGCCTAAGCCGTC 59.249 55.000 0.00 0.00 41.25 4.79
317 318 0.753262 CTATGGTCAGCCTAAGCCGT 59.247 55.000 0.00 0.00 41.25 5.68
318 319 0.753262 ACTATGGTCAGCCTAAGCCG 59.247 55.000 0.00 0.00 41.25 5.52
319 320 1.202698 CCACTATGGTCAGCCTAAGCC 60.203 57.143 0.00 0.00 33.85 4.35
320 321 1.202698 CCCACTATGGTCAGCCTAAGC 60.203 57.143 0.00 0.00 35.17 3.09
321 322 1.417890 CCCCACTATGGTCAGCCTAAG 59.582 57.143 0.00 0.00 35.17 2.18
322 323 1.507140 CCCCACTATGGTCAGCCTAA 58.493 55.000 0.00 0.00 35.17 2.69
323 324 0.399949 CCCCCACTATGGTCAGCCTA 60.400 60.000 0.00 0.00 35.17 3.93
324 325 1.694169 CCCCCACTATGGTCAGCCT 60.694 63.158 0.00 0.00 35.17 4.58
325 326 0.693092 TACCCCCACTATGGTCAGCC 60.693 60.000 0.00 0.00 35.17 4.85
326 327 1.134189 GTTACCCCCACTATGGTCAGC 60.134 57.143 0.00 0.00 35.17 4.26
327 328 2.193127 TGTTACCCCCACTATGGTCAG 58.807 52.381 0.00 0.00 35.17 3.51
328 329 2.345782 TGTTACCCCCACTATGGTCA 57.654 50.000 0.00 0.00 35.17 4.02
329 330 4.411212 ACTTATGTTACCCCCACTATGGTC 59.589 45.833 0.00 0.00 35.17 4.02
330 331 4.377134 ACTTATGTTACCCCCACTATGGT 58.623 43.478 0.00 0.00 35.17 3.55
331 332 5.605488 ACTACTTATGTTACCCCCACTATGG 59.395 44.000 0.00 0.00 37.25 2.74
332 333 6.742559 ACTACTTATGTTACCCCCACTATG 57.257 41.667 0.00 0.00 0.00 2.23
333 334 8.236643 TGATACTACTTATGTTACCCCCACTAT 58.763 37.037 0.00 0.00 0.00 2.12
334 335 7.594570 TGATACTACTTATGTTACCCCCACTA 58.405 38.462 0.00 0.00 0.00 2.74
335 336 6.446451 TGATACTACTTATGTTACCCCCACT 58.554 40.000 0.00 0.00 0.00 4.00
336 337 6.736110 TGATACTACTTATGTTACCCCCAC 57.264 41.667 0.00 0.00 0.00 4.61
337 338 6.239772 GCATGATACTACTTATGTTACCCCCA 60.240 42.308 0.00 0.00 0.00 4.96
338 339 6.171213 GCATGATACTACTTATGTTACCCCC 58.829 44.000 0.00 0.00 0.00 5.40
339 340 6.649557 GTGCATGATACTACTTATGTTACCCC 59.350 42.308 0.00 0.00 0.00 4.95
340 341 7.442656 AGTGCATGATACTACTTATGTTACCC 58.557 38.462 0.00 0.00 0.00 3.69
341 342 8.888579 AAGTGCATGATACTACTTATGTTACC 57.111 34.615 0.00 0.00 32.05 2.85
345 346 9.751542 GTCTTAAGTGCATGATACTACTTATGT 57.248 33.333 1.63 0.00 36.04 2.29
346 347 9.973450 AGTCTTAAGTGCATGATACTACTTATG 57.027 33.333 1.63 5.60 36.04 1.90
348 349 9.409918 AGAGTCTTAAGTGCATGATACTACTTA 57.590 33.333 1.63 0.26 35.26 2.24
349 350 8.299990 AGAGTCTTAAGTGCATGATACTACTT 57.700 34.615 1.63 1.22 37.21 2.24
350 351 7.558081 TGAGAGTCTTAAGTGCATGATACTACT 59.442 37.037 1.63 0.32 0.00 2.57
351 352 7.708051 TGAGAGTCTTAAGTGCATGATACTAC 58.292 38.462 1.63 0.00 0.00 2.73
352 353 7.881775 TGAGAGTCTTAAGTGCATGATACTA 57.118 36.000 1.63 0.00 0.00 1.82
353 354 6.782082 TGAGAGTCTTAAGTGCATGATACT 57.218 37.500 1.63 0.00 0.00 2.12
354 355 7.331934 TGTTTGAGAGTCTTAAGTGCATGATAC 59.668 37.037 1.63 0.00 0.00 2.24
355 356 7.386059 TGTTTGAGAGTCTTAAGTGCATGATA 58.614 34.615 1.63 0.00 0.00 2.15
356 357 6.233434 TGTTTGAGAGTCTTAAGTGCATGAT 58.767 36.000 1.63 0.00 0.00 2.45
357 358 5.610398 TGTTTGAGAGTCTTAAGTGCATGA 58.390 37.500 1.63 0.00 0.00 3.07
358 359 5.929697 TGTTTGAGAGTCTTAAGTGCATG 57.070 39.130 1.63 0.00 0.00 4.06
359 360 5.106396 GCATGTTTGAGAGTCTTAAGTGCAT 60.106 40.000 18.39 12.52 0.00 3.96
360 361 4.214119 GCATGTTTGAGAGTCTTAAGTGCA 59.786 41.667 18.39 11.30 0.00 4.57
361 362 4.453819 AGCATGTTTGAGAGTCTTAAGTGC 59.546 41.667 16.84 16.84 0.00 4.40
362 363 6.551385 AAGCATGTTTGAGAGTCTTAAGTG 57.449 37.500 1.63 0.00 0.00 3.16
363 364 7.880195 ACATAAGCATGTTTGAGAGTCTTAAGT 59.120 33.333 4.89 0.00 42.98 2.24
364 365 8.261492 ACATAAGCATGTTTGAGAGTCTTAAG 57.739 34.615 4.89 0.00 42.98 1.85
365 366 9.719355 TTACATAAGCATGTTTGAGAGTCTTAA 57.281 29.630 4.89 0.00 42.98 1.85
366 367 9.151471 GTTACATAAGCATGTTTGAGAGTCTTA 57.849 33.333 4.89 0.00 42.98 2.10
367 368 7.661437 TGTTACATAAGCATGTTTGAGAGTCTT 59.339 33.333 4.89 0.00 42.98 3.01
368 369 7.161404 TGTTACATAAGCATGTTTGAGAGTCT 58.839 34.615 4.89 0.00 42.98 3.24
369 370 7.331934 TCTGTTACATAAGCATGTTTGAGAGTC 59.668 37.037 4.89 0.00 42.98 3.36
370 371 7.118390 GTCTGTTACATAAGCATGTTTGAGAGT 59.882 37.037 4.89 1.29 42.98 3.24
371 372 7.118245 TGTCTGTTACATAAGCATGTTTGAGAG 59.882 37.037 4.89 0.00 42.98 3.20
372 373 6.934083 TGTCTGTTACATAAGCATGTTTGAGA 59.066 34.615 4.89 0.00 42.98 3.27
373 374 7.132694 TGTCTGTTACATAAGCATGTTTGAG 57.867 36.000 4.89 0.00 42.98 3.02
374 375 7.503521 TTGTCTGTTACATAAGCATGTTTGA 57.496 32.000 4.89 0.00 42.98 2.69
375 376 8.746922 AATTGTCTGTTACATAAGCATGTTTG 57.253 30.769 4.89 0.00 42.98 2.93
430 431 8.073768 GCAGCATAACATTTATTATGTTACGGT 58.926 33.333 11.33 7.35 44.28 4.83
431 432 7.537306 GGCAGCATAACATTTATTATGTTACGG 59.463 37.037 11.33 8.73 44.28 4.02
432 433 8.073167 TGGCAGCATAACATTTATTATGTTACG 58.927 33.333 11.33 6.06 44.28 3.18
433 434 9.180678 GTGGCAGCATAACATTTATTATGTTAC 57.819 33.333 11.33 2.60 44.28 2.50
434 435 9.130661 AGTGGCAGCATAACATTTATTATGTTA 57.869 29.630 11.45 11.45 45.16 2.41
435 436 8.010733 AGTGGCAGCATAACATTTATTATGTT 57.989 30.769 8.08 8.08 42.29 2.71
436 437 7.587037 AGTGGCAGCATAACATTTATTATGT 57.413 32.000 0.00 0.00 42.29 2.29
437 438 9.563898 CATAGTGGCAGCATAACATTTATTATG 57.436 33.333 0.00 1.89 42.89 1.90
438 439 9.300681 ACATAGTGGCAGCATAACATTTATTAT 57.699 29.630 0.00 0.00 0.00 1.28
439 440 8.690203 ACATAGTGGCAGCATAACATTTATTA 57.310 30.769 0.00 0.00 0.00 0.98
440 441 7.285172 TGACATAGTGGCAGCATAACATTTATT 59.715 33.333 0.00 0.00 28.05 1.40
441 442 6.772233 TGACATAGTGGCAGCATAACATTTAT 59.228 34.615 0.00 0.00 28.05 1.40
442 443 6.118852 TGACATAGTGGCAGCATAACATTTA 58.881 36.000 0.00 0.00 28.05 1.40
443 444 4.949238 TGACATAGTGGCAGCATAACATTT 59.051 37.500 0.00 0.00 28.05 2.32
444 445 4.525996 TGACATAGTGGCAGCATAACATT 58.474 39.130 0.00 0.00 28.05 2.71
445 446 4.155063 TGACATAGTGGCAGCATAACAT 57.845 40.909 0.00 0.00 28.05 2.71
446 447 3.625649 TGACATAGTGGCAGCATAACA 57.374 42.857 0.00 0.00 28.05 2.41
447 448 3.879295 ACATGACATAGTGGCAGCATAAC 59.121 43.478 0.00 0.00 39.76 1.89
448 449 4.155063 ACATGACATAGTGGCAGCATAA 57.845 40.909 0.00 0.00 39.76 1.90
449 450 3.843893 ACATGACATAGTGGCAGCATA 57.156 42.857 0.00 0.00 39.76 3.14
450 451 2.723322 ACATGACATAGTGGCAGCAT 57.277 45.000 0.00 0.00 39.76 3.79
451 452 3.134442 TCATACATGACATAGTGGCAGCA 59.866 43.478 0.00 0.00 39.76 4.41
452 453 3.732212 TCATACATGACATAGTGGCAGC 58.268 45.455 0.00 0.00 39.76 5.25
453 454 9.657419 TTATTATCATACATGACATAGTGGCAG 57.343 33.333 0.00 0.00 39.76 4.85
560 561 9.656323 GGTCATAGTGGGGAGTATCATATATTA 57.344 37.037 0.00 0.00 36.25 0.98
561 562 8.129001 TGGTCATAGTGGGGAGTATCATATATT 58.871 37.037 0.00 0.00 36.25 1.28
562 563 7.662083 TGGTCATAGTGGGGAGTATCATATAT 58.338 38.462 0.00 0.00 36.25 0.86
563 564 7.051696 TGGTCATAGTGGGGAGTATCATATA 57.948 40.000 0.00 0.00 36.25 0.86
564 565 5.915628 TGGTCATAGTGGGGAGTATCATAT 58.084 41.667 0.00 0.00 36.25 1.78
565 566 5.333581 CTGGTCATAGTGGGGAGTATCATA 58.666 45.833 0.00 0.00 36.25 2.15
566 567 4.163427 CTGGTCATAGTGGGGAGTATCAT 58.837 47.826 0.00 0.00 36.25 2.45
567 568 3.576861 CTGGTCATAGTGGGGAGTATCA 58.423 50.000 0.00 0.00 36.25 2.15
568 569 2.300437 GCTGGTCATAGTGGGGAGTATC 59.700 54.545 0.00 0.00 0.00 2.24
569 570 2.330216 GCTGGTCATAGTGGGGAGTAT 58.670 52.381 0.00 0.00 0.00 2.12
570 571 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
571 572 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
572 573 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
573 574 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
574 575 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
575 576 1.417890 CCTAAGGCTGGTCATAGTGGG 59.582 57.143 0.00 0.00 0.00 4.61
576 577 1.417890 CCCTAAGGCTGGTCATAGTGG 59.582 57.143 0.00 0.00 0.00 4.00
577 578 2.103263 GTCCCTAAGGCTGGTCATAGTG 59.897 54.545 0.00 0.00 0.00 2.74
578 579 2.399580 GTCCCTAAGGCTGGTCATAGT 58.600 52.381 0.00 0.00 0.00 2.12
579 580 1.341531 CGTCCCTAAGGCTGGTCATAG 59.658 57.143 0.00 0.00 0.00 2.23
580 581 1.410004 CGTCCCTAAGGCTGGTCATA 58.590 55.000 0.00 0.00 0.00 2.15
581 582 1.338136 CCGTCCCTAAGGCTGGTCAT 61.338 60.000 0.00 0.00 0.00 3.06
582 583 1.987855 CCGTCCCTAAGGCTGGTCA 60.988 63.158 0.00 0.00 0.00 4.02
583 584 1.551019 AACCGTCCCTAAGGCTGGTC 61.551 60.000 0.00 0.00 38.88 4.02
584 585 1.131928 AAACCGTCCCTAAGGCTGGT 61.132 55.000 0.00 0.00 40.83 4.00
585 586 0.906775 TAAACCGTCCCTAAGGCTGG 59.093 55.000 0.00 0.00 34.30 4.85
586 587 3.277142 AATAAACCGTCCCTAAGGCTG 57.723 47.619 0.00 0.00 0.00 4.85
587 588 3.680754 CGAAATAAACCGTCCCTAAGGCT 60.681 47.826 0.00 0.00 0.00 4.58
588 589 2.610833 CGAAATAAACCGTCCCTAAGGC 59.389 50.000 0.00 0.00 0.00 4.35
589 590 3.118665 TCCGAAATAAACCGTCCCTAAGG 60.119 47.826 0.00 0.00 0.00 2.69
590 591 3.867493 GTCCGAAATAAACCGTCCCTAAG 59.133 47.826 0.00 0.00 0.00 2.18
591 592 3.515104 AGTCCGAAATAAACCGTCCCTAA 59.485 43.478 0.00 0.00 0.00 2.69
592 593 3.099141 AGTCCGAAATAAACCGTCCCTA 58.901 45.455 0.00 0.00 0.00 3.53
593 594 1.904537 AGTCCGAAATAAACCGTCCCT 59.095 47.619 0.00 0.00 0.00 4.20
594 595 2.391616 AGTCCGAAATAAACCGTCCC 57.608 50.000 0.00 0.00 0.00 4.46
595 596 5.861222 TTTTAGTCCGAAATAAACCGTCC 57.139 39.130 0.00 0.00 0.00 4.79
596 597 7.064060 TGATTTTAGTCCGAAATAAACCGTC 57.936 36.000 0.00 0.00 0.00 4.79
597 598 7.619964 ATGATTTTAGTCCGAAATAAACCGT 57.380 32.000 0.00 0.00 0.00 4.83
598 599 8.395633 AGAATGATTTTAGTCCGAAATAAACCG 58.604 33.333 0.00 0.00 0.00 4.44
599 600 9.503427 CAGAATGATTTTAGTCCGAAATAAACC 57.497 33.333 0.00 0.00 39.69 3.27
600 601 9.010366 GCAGAATGATTTTAGTCCGAAATAAAC 57.990 33.333 0.00 0.00 39.69 2.01
609 610 5.065731 CCAGTCAGCAGAATGATTTTAGTCC 59.934 44.000 8.23 0.00 42.19 3.85
611 612 5.564550 ACCAGTCAGCAGAATGATTTTAGT 58.435 37.500 8.23 0.00 42.19 2.24
624 625 1.673477 CCAGTGCTACCAGTCAGCA 59.327 57.895 0.00 0.00 46.47 4.41
625 626 1.743252 GCCAGTGCTACCAGTCAGC 60.743 63.158 0.00 0.00 39.56 4.26
627 628 1.200760 ATGGCCAGTGCTACCAGTCA 61.201 55.000 13.05 0.00 36.78 3.41
629 630 1.511613 ATATGGCCAGTGCTACCAGT 58.488 50.000 13.05 0.00 36.78 4.00
630 631 3.769739 TTATATGGCCAGTGCTACCAG 57.230 47.619 13.05 0.00 36.78 4.00
631 632 4.722526 AATTATATGGCCAGTGCTACCA 57.277 40.909 13.05 0.84 37.99 3.25
632 633 7.012421 GCTAATAATTATATGGCCAGTGCTACC 59.988 40.741 13.05 0.00 37.74 3.18
633 634 7.770897 AGCTAATAATTATATGGCCAGTGCTAC 59.229 37.037 13.05 0.00 37.74 3.58
635 636 6.725364 AGCTAATAATTATATGGCCAGTGCT 58.275 36.000 13.05 0.00 37.74 4.40
638 639 8.940397 AACAAGCTAATAATTATATGGCCAGT 57.060 30.769 13.05 4.93 0.00 4.00
702 703 1.024579 GGCGAGCGATGGAAGGAAAA 61.025 55.000 0.00 0.00 0.00 2.29
733 734 1.886542 GTCACGGGAGCAAAGGAAATT 59.113 47.619 0.00 0.00 0.00 1.82
734 735 1.073923 AGTCACGGGAGCAAAGGAAAT 59.926 47.619 0.00 0.00 0.00 2.17
742 743 0.749818 TTTTGCAAGTCACGGGAGCA 60.750 50.000 0.00 0.00 0.00 4.26
743 744 0.598065 ATTTTGCAAGTCACGGGAGC 59.402 50.000 0.00 0.00 0.00 4.70
744 745 1.200020 GGATTTTGCAAGTCACGGGAG 59.800 52.381 13.72 0.00 0.00 4.30
745 746 1.243902 GGATTTTGCAAGTCACGGGA 58.756 50.000 13.72 0.00 0.00 5.14
746 747 0.109781 CGGATTTTGCAAGTCACGGG 60.110 55.000 13.72 0.00 0.00 5.28
926 930 3.303135 TGAACTGACCTCGCGCCT 61.303 61.111 0.00 0.00 0.00 5.52
1437 1451 0.905357 CCTTGTAGGTGACCTCCCAG 59.095 60.000 7.77 0.00 34.61 4.45
1969 1983 8.435430 GCAAGTTAGGTAAAATGAAATGAAAGC 58.565 33.333 0.00 0.00 0.00 3.51
2055 2069 0.244994 CAGGTAGACGCAAGCACTCT 59.755 55.000 0.00 0.00 45.62 3.24
2066 2080 1.555075 TCATGAAGTGGGCAGGTAGAC 59.445 52.381 0.00 0.00 0.00 2.59
2386 2401 2.295349 ACTATTGCAGGCAAGCATATGC 59.705 45.455 20.36 20.36 45.19 3.14
2393 2408 5.634896 CAGAACTAAACTATTGCAGGCAAG 58.365 41.667 12.66 2.24 39.47 4.01
2472 2487 5.106948 ACAGACATAGTTTTCACAATGCTCG 60.107 40.000 0.00 0.00 0.00 5.03
2656 2671 4.072131 TGAAGGCAGGATTGAACTAACAC 58.928 43.478 0.00 0.00 0.00 3.32
2707 2722 6.324819 AGAAATAGATTGTGTGGCAAAATCG 58.675 36.000 11.11 0.00 41.49 3.34
2893 2908 6.639686 GCTTAATTCATGCATGAGGTACAATG 59.360 38.462 27.25 15.17 38.19 2.82
3040 3055 7.120619 GCATGAGCAAAAACAGCATGGTTATA 61.121 38.462 0.00 0.00 43.77 0.98
3041 3056 6.365153 GCATGAGCAAAAACAGCATGGTTAT 61.365 40.000 0.00 0.00 43.77 1.89
3349 3368 7.729116 AGTAATAACCGGCACTAGCTATTTAA 58.271 34.615 0.00 0.00 41.70 1.52
4542 4561 4.574892 TCATACTTTGATCGTTCCTGCAA 58.425 39.130 0.00 0.00 0.00 4.08
5118 5137 2.423538 CTCCTTCCTTAACAATTGGCCG 59.576 50.000 10.83 0.00 0.00 6.13
5148 5167 2.369394 CAATGGCCCTTCAGTTAGGAC 58.631 52.381 0.00 0.00 37.50 3.85
5253 5272 6.077993 TCTCAACCAGCATATCCTGTATAGT 58.922 40.000 0.00 0.00 0.00 2.12
5579 5598 2.282816 CCCAAACCACGGCCATCA 60.283 61.111 2.24 0.00 0.00 3.07
6026 6045 4.469657 AGGTTGCCTTCACATTTAAGACA 58.530 39.130 0.00 0.00 0.00 3.41
6068 6087 3.386543 CCCTAGCATTTCAGGGTCG 57.613 57.895 0.00 0.00 45.70 4.79
6360 6379 0.540923 AGGCTGCTCAGAGGAATGTC 59.459 55.000 0.00 0.00 0.00 3.06
6362 6381 0.540454 TCAGGCTGCTCAGAGGAATG 59.460 55.000 10.34 0.00 0.00 2.67
6470 6489 4.751767 TTGCCTCAAACTTCCAATTTGT 57.248 36.364 0.00 0.00 38.08 2.83
6503 6522 5.446143 AGACATCGAAGCTACTCCAATAG 57.554 43.478 0.00 0.00 0.00 1.73
6835 6877 0.471022 AAAACCATGAAAGCCCCCGT 60.471 50.000 0.00 0.00 0.00 5.28
6903 7057 9.944376 AAGCAAAATGAGTAAATCTACACTCTA 57.056 29.630 3.65 0.00 41.46 2.43
6941 7097 7.765695 AAGTCTTTTTAGAGATTCCAATGCA 57.234 32.000 0.00 0.00 0.00 3.96
7009 7165 3.119708 GCAACAATCAGGTGAATCAGGTC 60.120 47.826 0.00 0.00 36.95 3.85
7157 7317 7.573968 AAAATTGCAAGAAACTCTGTACTCT 57.426 32.000 4.94 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.