Multiple sequence alignment - TraesCS7B01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G102400 chr7B 100.000 4475 0 0 1 4475 116500192 116504666 0.000000e+00 8264.0
1 TraesCS7B01G102400 chr7B 98.246 399 5 2 4075 4473 401117869 401118265 0.000000e+00 697.0
2 TraesCS7B01G102400 chr7B 86.385 426 52 1 984 1409 116393522 116393941 1.130000e-125 460.0
3 TraesCS7B01G102400 chr7B 82.938 422 53 15 1789 2205 116395484 116395891 3.290000e-96 363.0
4 TraesCS7B01G102400 chr7B 93.103 145 8 2 2236 2378 126893248 126893104 1.260000e-50 211.0
5 TraesCS7B01G102400 chr7B 83.168 202 21 11 2362 2555 116395919 116396115 5.950000e-39 172.0
6 TraesCS7B01G102400 chr7B 74.409 254 59 4 127 379 99137318 99137566 2.200000e-18 104.0
7 TraesCS7B01G102400 chr7A 89.184 2219 186 26 1 2200 156317122 156319305 0.000000e+00 2719.0
8 TraesCS7B01G102400 chr7A 86.416 611 49 15 3048 3639 156320365 156320960 4.880000e-179 638.0
9 TraesCS7B01G102400 chr7A 81.932 559 67 18 876 1408 156128572 156129122 4.110000e-120 442.0
10 TraesCS7B01G102400 chr7A 83.175 422 52 15 1789 2205 156130450 156130857 7.070000e-98 368.0
11 TraesCS7B01G102400 chr7A 81.425 393 42 17 2460 2831 156319445 156319827 4.380000e-75 292.0
12 TraesCS7B01G102400 chr7A 77.713 516 61 22 3048 3512 156131668 156132180 2.650000e-67 267.0
13 TraesCS7B01G102400 chr7A 83.260 227 28 6 2830 3050 156319976 156320198 2.730000e-47 200.0
14 TraesCS7B01G102400 chr7A 79.024 205 37 6 186 388 169043201 169043401 7.810000e-28 135.0
15 TraesCS7B01G102400 chr7A 93.243 74 5 0 2362 2435 156319376 156319449 4.730000e-20 110.0
16 TraesCS7B01G102400 chr7A 94.340 53 0 3 1534 1584 156130271 156130322 1.330000e-10 78.7
17 TraesCS7B01G102400 chr7D 93.921 1349 72 5 859 2205 154391581 154392921 0.000000e+00 2028.0
18 TraesCS7B01G102400 chr7D 93.590 624 24 7 2902 3512 154393623 154394243 0.000000e+00 917.0
19 TraesCS7B01G102400 chr7D 89.384 471 27 9 2363 2828 154392978 154393430 5.020000e-159 571.0
20 TraesCS7B01G102400 chr7D 86.118 425 53 1 984 1408 154190883 154191301 1.900000e-123 453.0
21 TraesCS7B01G102400 chr7D 83.295 437 56 14 1775 2205 154193196 154193621 1.950000e-103 387.0
22 TraesCS7B01G102400 chr7D 75.567 397 81 12 6 389 509561260 509561653 9.890000e-42 182.0
23 TraesCS7B01G102400 chr7D 78.261 207 42 3 193 398 79555792 79555588 3.630000e-26 130.0
24 TraesCS7B01G102400 chr7D 79.327 208 23 8 3063 3253 154194299 154194503 1.310000e-25 128.0
25 TraesCS7B01G102400 chr7D 97.619 42 0 1 1542 1582 154192592 154192633 2.230000e-08 71.3
26 TraesCS7B01G102400 chr2B 98.447 837 12 1 3639 4475 142968372 142969207 0.000000e+00 1472.0
27 TraesCS7B01G102400 chr2B 77.778 90 20 0 677 766 483995717 483995806 6.250000e-04 56.5
28 TraesCS7B01G102400 chr5B 96.296 837 15 2 3639 4475 668288523 668289343 0.000000e+00 1360.0
29 TraesCS7B01G102400 chr5B 95.579 837 21 3 3639 4475 256245634 256244814 0.000000e+00 1327.0
30 TraesCS7B01G102400 chr5B 94.118 136 8 0 2231 2366 629278189 629278054 1.630000e-49 207.0
31 TraesCS7B01G102400 chr5B 94.118 136 8 0 2231 2366 629360759 629360624 1.630000e-49 207.0
32 TraesCS7B01G102400 chrUn 95.579 837 21 3 3639 4475 290494118 290494938 0.000000e+00 1327.0
33 TraesCS7B01G102400 chr5D 95.006 841 20 8 3635 4475 527455962 527456780 0.000000e+00 1301.0
34 TraesCS7B01G102400 chr5D 74.805 385 77 12 6 375 455809701 455810080 5.990000e-34 156.0
35 TraesCS7B01G102400 chr5D 74.046 393 79 14 6 380 283013460 283013847 6.040000e-29 139.0
36 TraesCS7B01G102400 chr2D 94.863 837 21 8 3639 4475 8770910 8771724 0.000000e+00 1288.0
37 TraesCS7B01G102400 chr2D 79.213 178 35 2 193 369 77554920 77554744 6.080000e-24 122.0
38 TraesCS7B01G102400 chr2D 73.446 354 80 11 4 345 11253952 11253601 2.190000e-23 121.0
39 TraesCS7B01G102400 chr2D 77.717 184 38 3 187 369 540322888 540322707 4.730000e-20 110.0
40 TraesCS7B01G102400 chr2A 94.718 833 22 8 3639 4471 674247630 674246820 0.000000e+00 1275.0
41 TraesCS7B01G102400 chr3D 94.504 837 24 8 3639 4475 418513310 418514124 0.000000e+00 1271.0
42 TraesCS7B01G102400 chr3D 76.555 209 45 4 181 388 63011316 63011521 1.320000e-20 111.0
43 TraesCS7B01G102400 chr3D 81.250 80 15 0 312 391 559110816 559110737 1.040000e-06 65.8
44 TraesCS7B01G102400 chr4D 93.957 844 22 9 3639 4475 503458622 503459443 0.000000e+00 1249.0
45 TraesCS7B01G102400 chr4D 79.808 208 41 1 181 387 417812669 417812876 2.790000e-32 150.0
46 TraesCS7B01G102400 chr4D 84.211 76 12 0 181 256 6922130 6922055 1.730000e-09 75.0
47 TraesCS7B01G102400 chr4B 94.118 833 27 6 3641 4473 390738553 390737743 0.000000e+00 1247.0
48 TraesCS7B01G102400 chr4B 96.212 132 5 0 2233 2364 99436912 99437043 2.710000e-52 217.0
49 TraesCS7B01G102400 chr4B 94.815 135 7 0 2229 2363 63765688 63765822 1.260000e-50 211.0
50 TraesCS7B01G102400 chr6D 78.173 394 73 11 6 387 337846894 337847286 5.790000e-59 239.0
51 TraesCS7B01G102400 chr6D 73.008 389 89 10 6 380 389587420 389587034 6.080000e-24 122.0
52 TraesCS7B01G102400 chr6D 75.676 148 33 1 195 342 419278934 419279078 2.230000e-08 71.3
53 TraesCS7B01G102400 chr6D 87.500 48 6 0 181 228 34399061 34399108 6.250000e-04 56.5
54 TraesCS7B01G102400 chr6A 94.964 139 7 0 2229 2367 595491867 595492005 7.540000e-53 219.0
55 TraesCS7B01G102400 chr6A 84.091 88 14 0 190 277 562698574 562698661 7.980000e-13 86.1
56 TraesCS7B01G102400 chr1A 95.588 136 5 1 2228 2363 481650967 481651101 2.710000e-52 217.0
57 TraesCS7B01G102400 chr3B 95.522 134 6 0 2234 2367 748784611 748784744 9.750000e-52 215.0
58 TraesCS7B01G102400 chr3B 77.570 214 44 4 177 387 749037026 749036814 4.700000e-25 126.0
59 TraesCS7B01G102400 chr4A 90.260 154 13 1 2211 2364 548789414 548789263 2.730000e-47 200.0
60 TraesCS7B01G102400 chr4A 86.538 52 7 0 8 59 31430972 31431023 1.740000e-04 58.4
61 TraesCS7B01G102400 chr5A 74.169 391 87 12 7 386 428147535 428147922 2.790000e-32 150.0
62 TraesCS7B01G102400 chr1D 81.183 186 34 1 181 366 365430308 365430492 1.000000e-31 148.0
63 TraesCS7B01G102400 chr1D 81.988 161 25 4 186 344 223753862 223753704 2.810000e-27 134.0
64 TraesCS7B01G102400 chr1D 75.479 261 50 10 6 253 22441363 22441622 1.020000e-21 115.0
65 TraesCS7B01G102400 chr1D 73.333 255 67 1 516 770 116929458 116929711 4.770000e-15 93.5
66 TraesCS7B01G102400 chr1D 81.553 103 16 3 285 387 205601402 205601303 1.030000e-11 82.4
67 TraesCS7B01G102400 chr1D 74.419 215 39 15 181 387 469891164 469890958 1.330000e-10 78.7
68 TraesCS7B01G102400 chr3A 79.695 197 36 2 194 389 721342888 721343081 6.040000e-29 139.0
69 TraesCS7B01G102400 chr3A 73.028 393 93 8 3 387 71805976 71806363 4.700000e-25 126.0
70 TraesCS7B01G102400 chr1B 78.616 159 34 0 186 344 323322774 323322616 6.120000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G102400 chr7B 116500192 116504666 4474 False 8264.000000 8264 100.000000 1 4475 1 chr7B.!!$F2 4474
1 TraesCS7B01G102400 chr7B 116393522 116396115 2593 False 331.666667 460 84.163667 984 2555 3 chr7B.!!$F4 1571
2 TraesCS7B01G102400 chr7A 156317122 156320960 3838 False 791.800000 2719 86.705600 1 3639 5 chr7A.!!$F3 3638
3 TraesCS7B01G102400 chr7A 156128572 156132180 3608 False 288.925000 442 84.290000 876 3512 4 chr7A.!!$F2 2636
4 TraesCS7B01G102400 chr7D 154391581 154394243 2662 False 1172.000000 2028 92.298333 859 3512 3 chr7D.!!$F3 2653
5 TraesCS7B01G102400 chr7D 154190883 154194503 3620 False 259.825000 453 86.589750 984 3253 4 chr7D.!!$F2 2269
6 TraesCS7B01G102400 chr2B 142968372 142969207 835 False 1472.000000 1472 98.447000 3639 4475 1 chr2B.!!$F1 836
7 TraesCS7B01G102400 chr5B 668288523 668289343 820 False 1360.000000 1360 96.296000 3639 4475 1 chr5B.!!$F1 836
8 TraesCS7B01G102400 chr5B 256244814 256245634 820 True 1327.000000 1327 95.579000 3639 4475 1 chr5B.!!$R1 836
9 TraesCS7B01G102400 chrUn 290494118 290494938 820 False 1327.000000 1327 95.579000 3639 4475 1 chrUn.!!$F1 836
10 TraesCS7B01G102400 chr5D 527455962 527456780 818 False 1301.000000 1301 95.006000 3635 4475 1 chr5D.!!$F3 840
11 TraesCS7B01G102400 chr2D 8770910 8771724 814 False 1288.000000 1288 94.863000 3639 4475 1 chr2D.!!$F1 836
12 TraesCS7B01G102400 chr2A 674246820 674247630 810 True 1275.000000 1275 94.718000 3639 4471 1 chr2A.!!$R1 832
13 TraesCS7B01G102400 chr3D 418513310 418514124 814 False 1271.000000 1271 94.504000 3639 4475 1 chr3D.!!$F2 836
14 TraesCS7B01G102400 chr4D 503458622 503459443 821 False 1249.000000 1249 93.957000 3639 4475 1 chr4D.!!$F2 836
15 TraesCS7B01G102400 chr4B 390737743 390738553 810 True 1247.000000 1247 94.118000 3641 4473 1 chr4B.!!$R1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 208 0.031994 CCACAAAAACTTCCCGGCTG 59.968 55.0 0.00 0.0 0.0 4.85 F
759 764 0.036388 AGGGATAAGGTGTGTGTGCG 60.036 55.0 0.00 0.0 0.0 5.34 F
2156 4063 0.103208 GCTGAGCTGCTGTATACGGT 59.897 55.0 7.01 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 3838 0.319900 GAGGATGCATATCACGCCGT 60.320 55.0 0.00 0.0 34.90 5.68 R
2340 4305 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
3772 6666 0.530744 TCAGGACCGAAGACCGAATG 59.469 55.0 0.00 0.0 41.76 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.353208 CCTCCTCGAGTTTGTCCTTCTG 60.353 54.545 12.31 0.00 0.00 3.02
33 34 2.234908 CCTCGAGTTTGTCCTTCTGGAT 59.765 50.000 12.31 0.00 45.29 3.41
64 65 2.029470 GGAGCTCTGACATAGATTCCCG 60.029 54.545 14.64 0.00 34.98 5.14
67 68 1.688735 CTCTGACATAGATTCCCGCCA 59.311 52.381 0.00 0.00 34.21 5.69
70 71 1.347707 TGACATAGATTCCCGCCATCC 59.652 52.381 0.00 0.00 0.00 3.51
77 78 0.405585 ATTCCCGCCATCCCATTAGG 59.594 55.000 0.00 0.00 0.00 2.69
98 99 1.719529 TCGTGAGGGTAGGGTTTTCA 58.280 50.000 0.00 0.00 0.00 2.69
100 101 2.235402 TCGTGAGGGTAGGGTTTTCATC 59.765 50.000 0.00 0.00 0.00 2.92
114 115 5.390991 GGGTTTTCATCGTGTGAAGAGATTC 60.391 44.000 6.22 0.00 46.85 2.52
116 117 2.530177 TCATCGTGTGAAGAGATTCGC 58.470 47.619 0.00 0.00 32.78 4.70
117 118 2.094752 TCATCGTGTGAAGAGATTCGCA 60.095 45.455 0.34 0.34 38.93 5.10
124 125 5.134202 TGTGAAGAGATTCGCACTTTAGA 57.866 39.130 0.34 0.00 36.63 2.10
126 127 5.164954 GTGAAGAGATTCGCACTTTAGAGT 58.835 41.667 0.00 0.00 36.25 3.24
129 130 7.328737 GTGAAGAGATTCGCACTTTAGAGTTTA 59.671 37.037 0.00 0.00 32.54 2.01
130 131 7.542477 TGAAGAGATTCGCACTTTAGAGTTTAG 59.458 37.037 0.00 0.00 32.54 1.85
131 132 7.159322 AGAGATTCGCACTTTAGAGTTTAGA 57.841 36.000 0.00 0.00 32.54 2.10
132 133 7.030768 AGAGATTCGCACTTTAGAGTTTAGAC 58.969 38.462 0.00 0.00 32.54 2.59
137 142 6.793349 TCGCACTTTAGAGTTTAGACCTATC 58.207 40.000 0.00 0.00 32.54 2.08
143 148 7.125963 ACTTTAGAGTTTAGACCTATCCAAGGG 59.874 40.741 0.00 0.00 40.84 3.95
153 158 0.391927 TATCCAAGGGTTCAACGGCG 60.392 55.000 4.80 4.80 0.00 6.46
158 163 0.602905 AAGGGTTCAACGGCGAAGAG 60.603 55.000 16.62 0.00 0.00 2.85
162 167 0.706729 GTTCAACGGCGAAGAGTACG 59.293 55.000 16.62 0.00 0.00 3.67
163 168 0.592637 TTCAACGGCGAAGAGTACGA 59.407 50.000 16.62 0.00 0.00 3.43
172 177 2.082231 CGAAGAGTACGACTCCAAGGA 58.918 52.381 10.24 0.00 46.18 3.36
184 189 0.391597 TCCAAGGAACTGGTGACGTC 59.608 55.000 9.11 9.11 40.86 4.34
191 196 6.916848 AAGGAACTGGTGACGTCCACAAAA 62.917 45.833 14.12 0.00 43.39 2.44
199 204 1.003223 GACGTCCACAAAAACTTCCCG 60.003 52.381 3.51 0.00 0.00 5.14
203 208 0.031994 CCACAAAAACTTCCCGGCTG 59.968 55.000 0.00 0.00 0.00 4.85
222 227 1.344438 TGTCATCGACAAGGTCAAGCT 59.656 47.619 0.00 0.00 39.78 3.74
224 229 1.081892 CATCGACAAGGTCAAGCTGG 58.918 55.000 0.00 0.00 32.09 4.85
229 234 2.037136 CAAGGTCAAGCTGGCTCCG 61.037 63.158 0.00 0.00 0.00 4.63
243 248 3.694746 TCCGGTAGTGGAGTGCTG 58.305 61.111 0.00 0.00 33.05 4.41
244 249 1.076014 TCCGGTAGTGGAGTGCTGA 59.924 57.895 0.00 0.00 33.05 4.26
245 250 0.324368 TCCGGTAGTGGAGTGCTGAT 60.324 55.000 0.00 0.00 33.05 2.90
248 253 1.269309 CGGTAGTGGAGTGCTGATAGC 60.269 57.143 0.00 0.00 42.82 2.97
257 262 2.579787 GCTGATAGCGACGCGTGT 60.580 61.111 20.70 0.00 0.00 4.49
270 275 2.126618 CGTGTGCGGCTCGTTCTA 60.127 61.111 0.00 0.00 0.00 2.10
271 276 2.152699 CGTGTGCGGCTCGTTCTAG 61.153 63.158 0.00 0.00 0.00 2.43
276 281 2.483745 CGGCTCGTTCTAGCGACA 59.516 61.111 0.00 0.00 43.74 4.35
277 282 1.154093 CGGCTCGTTCTAGCGACAA 60.154 57.895 0.00 0.00 43.74 3.18
280 285 2.117910 GGCTCGTTCTAGCGACAATAC 58.882 52.381 0.00 0.00 43.74 1.89
283 288 3.731264 GCTCGTTCTAGCGACAATACTGT 60.731 47.826 0.00 0.00 36.80 3.55
289 294 4.409570 TCTAGCGACAATACTGTTCGTTC 58.590 43.478 2.13 0.00 35.30 3.95
296 301 4.312443 ACAATACTGTTCGTTCGGTGATT 58.688 39.130 0.00 0.00 28.57 2.57
298 303 5.237779 ACAATACTGTTCGTTCGGTGATTTT 59.762 36.000 0.00 0.00 28.57 1.82
299 304 3.602390 ACTGTTCGTTCGGTGATTTTG 57.398 42.857 0.00 0.00 0.00 2.44
306 311 3.566322 TCGTTCGGTGATTTTGGAATGTT 59.434 39.130 0.00 0.00 0.00 2.71
308 313 5.086058 CGTTCGGTGATTTTGGAATGTTAG 58.914 41.667 0.00 0.00 0.00 2.34
310 315 5.621197 TCGGTGATTTTGGAATGTTAGTG 57.379 39.130 0.00 0.00 0.00 2.74
344 349 4.552166 TGTTTGAGCTGCTTTGTACTTC 57.448 40.909 2.53 0.00 0.00 3.01
381 386 7.601508 TGATAATTGATCTGGATCATGTTCGAG 59.398 37.037 13.14 8.97 46.12 4.04
393 398 6.536582 GGATCATGTTCGAGAAAAAGATGAGA 59.463 38.462 0.00 0.00 39.06 3.27
397 402 9.435688 TCATGTTCGAGAAAAAGATGAGATTTA 57.564 29.630 0.00 0.00 33.10 1.40
464 469 9.921637 ACTTCAATGTTGAAACTTTTAGTTCAA 57.078 25.926 9.24 0.00 45.61 2.69
480 485 9.849166 TTTTAGTTCAAATTTCGTCTCAAAGTT 57.151 25.926 0.00 0.00 0.00 2.66
491 496 6.583912 TCGTCTCAAAGTTTGAAAGTACAG 57.416 37.500 18.55 6.16 39.58 2.74
496 501 6.764560 TCTCAAAGTTTGAAAGTACAGTACCC 59.235 38.462 18.55 0.00 39.58 3.69
515 520 8.701895 CAGTACCCTGATCCTTTAATTAGTACA 58.298 37.037 0.00 0.00 41.50 2.90
565 570 2.124860 GTGGTATCCACGGCCCAC 60.125 66.667 0.00 0.00 44.95 4.61
566 571 2.285069 TGGTATCCACGGCCCACT 60.285 61.111 0.00 0.00 0.00 4.00
567 572 1.001888 TGGTATCCACGGCCCACTA 59.998 57.895 0.00 0.00 0.00 2.74
568 573 0.618107 TGGTATCCACGGCCCACTAA 60.618 55.000 0.00 0.00 0.00 2.24
569 574 0.542805 GGTATCCACGGCCCACTAAA 59.457 55.000 0.00 0.00 0.00 1.85
570 575 1.474498 GGTATCCACGGCCCACTAAAG 60.474 57.143 0.00 0.00 0.00 1.85
573 578 0.475044 TCCACGGCCCACTAAAGTTT 59.525 50.000 0.00 0.00 0.00 2.66
576 581 2.486592 CCACGGCCCACTAAAGTTTAAG 59.513 50.000 0.00 0.00 0.00 1.85
578 583 3.566742 CACGGCCCACTAAAGTTTAAGTT 59.433 43.478 0.00 0.00 0.00 2.66
585 590 8.582437 GGCCCACTAAAGTTTAAGTTCTAAATT 58.418 33.333 0.00 0.00 0.00 1.82
600 605 8.574196 AGTTCTAAATTTGATTTTGGTGTTCG 57.426 30.769 0.00 0.00 33.82 3.95
609 614 8.934507 TTTGATTTTGGTGTTCGTATTTTTCT 57.065 26.923 0.00 0.00 0.00 2.52
610 615 8.934507 TTGATTTTGGTGTTCGTATTTTTCTT 57.065 26.923 0.00 0.00 0.00 2.52
611 616 8.346476 TGATTTTGGTGTTCGTATTTTTCTTG 57.654 30.769 0.00 0.00 0.00 3.02
612 617 8.191446 TGATTTTGGTGTTCGTATTTTTCTTGA 58.809 29.630 0.00 0.00 0.00 3.02
613 618 7.979115 TTTTGGTGTTCGTATTTTTCTTGAG 57.021 32.000 0.00 0.00 0.00 3.02
633 638 7.813148 TCTTGAGTTATTTTAGACCTTCTGACG 59.187 37.037 0.00 0.00 0.00 4.35
636 641 7.759886 TGAGTTATTTTAGACCTTCTGACGATG 59.240 37.037 0.00 0.00 0.00 3.84
657 662 2.665537 GTGCGTTCAGTCAGAGAAGATG 59.334 50.000 0.00 0.00 0.00 2.90
662 667 5.613577 GCGTTCAGTCAGAGAAGATGTTTTC 60.614 44.000 0.00 0.00 0.00 2.29
666 671 4.984785 CAGTCAGAGAAGATGTTTTCGTCA 59.015 41.667 0.00 0.00 38.23 4.35
667 672 5.118357 CAGTCAGAGAAGATGTTTTCGTCAG 59.882 44.000 0.00 0.00 38.23 3.51
676 681 3.143807 TGTTTTCGTCAGCAACAAAGG 57.856 42.857 0.00 0.00 0.00 3.11
680 685 1.092921 TCGTCAGCAACAAAGGCGTT 61.093 50.000 0.00 0.00 36.08 4.84
711 716 6.409185 CGACTTCGTCAATTTTAAGATGATGC 59.591 38.462 0.00 0.00 31.66 3.91
717 722 5.004726 GTCAATTTTAAGATGATGCGTTGGC 59.995 40.000 0.00 0.00 40.52 4.52
721 726 1.959042 AAGATGATGCGTTGGCCTAG 58.041 50.000 3.32 0.00 38.85 3.02
723 728 1.210478 AGATGATGCGTTGGCCTAGTT 59.790 47.619 3.32 0.00 38.85 2.24
759 764 0.036388 AGGGATAAGGTGTGTGTGCG 60.036 55.000 0.00 0.00 0.00 5.34
761 766 0.796312 GGATAAGGTGTGTGTGCGTG 59.204 55.000 0.00 0.00 0.00 5.34
763 768 1.234615 ATAAGGTGTGTGTGCGTGCC 61.235 55.000 0.00 0.00 0.00 5.01
764 769 2.318519 TAAGGTGTGTGTGCGTGCCT 62.319 55.000 0.00 0.00 0.00 4.75
765 770 3.209097 GGTGTGTGTGCGTGCCTT 61.209 61.111 0.00 0.00 0.00 4.35
766 771 2.327940 GTGTGTGTGCGTGCCTTC 59.672 61.111 0.00 0.00 0.00 3.46
768 773 1.525765 TGTGTGTGCGTGCCTTCAT 60.526 52.632 0.00 0.00 0.00 2.57
787 792 4.180817 TCATAAGGGCGAATGTATATGCG 58.819 43.478 0.00 0.00 38.43 4.73
797 802 6.336514 CGAATGTATATGCGCATGTCTAAT 57.663 37.500 32.48 19.35 0.00 1.73
802 807 6.095377 TGTATATGCGCATGTCTAATCTCTG 58.905 40.000 32.48 0.00 0.00 3.35
805 810 2.931969 TGCGCATGTCTAATCTCTGTTG 59.068 45.455 5.66 0.00 0.00 3.33
809 814 4.389992 CGCATGTCTAATCTCTGTTGTGTT 59.610 41.667 0.00 0.00 0.00 3.32
810 815 5.576774 CGCATGTCTAATCTCTGTTGTGTTA 59.423 40.000 0.00 0.00 0.00 2.41
811 816 6.090763 CGCATGTCTAATCTCTGTTGTGTTAA 59.909 38.462 0.00 0.00 0.00 2.01
854 860 7.360269 GTGCAACAAAAACCATAGAAATGATGG 60.360 37.037 0.00 0.05 42.90 3.51
866 880 3.009695 AGAAATGATGGGACCGTTTACCA 59.990 43.478 0.00 0.00 38.88 3.25
872 886 0.169451 GGGACCGTTTACCAATTGCG 59.831 55.000 0.00 0.00 0.00 4.85
874 888 0.455464 GACCGTTTACCAATTGCGGC 60.455 55.000 17.86 9.56 45.53 6.53
899 913 4.444838 ACTCGTTATGCGCGGCCA 62.445 61.111 8.83 0.00 41.07 5.36
923 937 0.319083 TAGAAAAGAACTCGCCGCCA 59.681 50.000 0.00 0.00 0.00 5.69
953 973 1.067250 GCAAACAACCGCACACCAT 59.933 52.632 0.00 0.00 0.00 3.55
1523 3043 4.696479 ACTAGAGCAAGGGATTATGTGG 57.304 45.455 0.00 0.00 0.00 4.17
1530 3050 5.329399 AGCAAGGGATTATGTGGTAAAACA 58.671 37.500 0.00 0.00 0.00 2.83
1628 3149 5.351948 TGGTACCATTTGATTCATCGAGA 57.648 39.130 11.60 0.00 0.00 4.04
1685 3463 4.163649 ACTCTCAGATGAAGAATGGATGCA 59.836 41.667 0.00 0.00 0.00 3.96
1720 3623 2.737252 CAGAGTTTAGAACGGTGGAAGC 59.263 50.000 0.00 0.00 36.23 3.86
1773 3676 7.482654 TGCATAGCATGTTCTATGTTCTTAC 57.517 36.000 16.84 5.11 44.73 2.34
1774 3677 7.275183 TGCATAGCATGTTCTATGTTCTTACT 58.725 34.615 16.84 0.00 44.73 2.24
1775 3678 7.770433 TGCATAGCATGTTCTATGTTCTTACTT 59.230 33.333 16.84 0.00 44.73 2.24
1776 3679 8.279103 GCATAGCATGTTCTATGTTCTTACTTC 58.721 37.037 16.84 0.50 44.73 3.01
1777 3680 9.539825 CATAGCATGTTCTATGTTCTTACTTCT 57.460 33.333 10.57 0.00 40.45 2.85
1916 3821 5.023533 TGACAGGCCTTACTATTCATCAC 57.976 43.478 0.00 0.00 0.00 3.06
1933 3838 0.251297 CACCAAGCACCAATGAGGGA 60.251 55.000 0.00 0.00 43.89 4.20
2014 3919 6.963083 AGATACTCACAGGGTATGTAACTC 57.037 41.667 0.00 0.00 41.41 3.01
2077 3984 4.761739 TGTTGTTCTCACCTTTCATGGATC 59.238 41.667 0.00 0.00 0.00 3.36
2156 4063 0.103208 GCTGAGCTGCTGTATACGGT 59.897 55.000 7.01 0.00 0.00 4.83
2201 4108 6.607600 TCTGTAAGTCATGTAACTGGCTCTAT 59.392 38.462 0.00 0.00 28.85 1.98
2239 4204 9.750783 TGGAACAGAGTAAGTATACTTTCTACT 57.249 33.333 22.66 18.98 42.47 2.57
2242 4207 8.750515 ACAGAGTAAGTATACTTTCTACTCCC 57.249 38.462 28.01 16.16 42.47 4.30
2243 4208 8.559175 ACAGAGTAAGTATACTTTCTACTCCCT 58.441 37.037 28.01 17.54 42.47 4.20
2244 4209 9.059260 CAGAGTAAGTATACTTTCTACTCCCTC 57.941 40.741 28.01 17.98 42.47 4.30
2245 4210 8.219868 AGAGTAAGTATACTTTCTACTCCCTCC 58.780 40.741 28.01 14.66 42.47 4.30
2246 4211 6.997476 AGTAAGTATACTTTCTACTCCCTCCG 59.003 42.308 22.66 0.00 39.36 4.63
2247 4212 5.385628 AGTATACTTTCTACTCCCTCCGT 57.614 43.478 0.00 0.00 0.00 4.69
2248 4213 5.375773 AGTATACTTTCTACTCCCTCCGTC 58.624 45.833 0.00 0.00 0.00 4.79
2249 4214 1.849977 ACTTTCTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
2250 4215 0.739561 CTTTCTACTCCCTCCGTCCG 59.260 60.000 0.00 0.00 0.00 4.79
2251 4216 0.329261 TTTCTACTCCCTCCGTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
2252 4217 0.329261 TTCTACTCCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
2253 4218 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
2254 4219 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2255 4220 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
2256 4221 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2257 4222 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2258 4223 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2259 4224 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2260 4225 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2261 4226 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2262 4227 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2263 4228 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2264 4229 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2265 4230 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2266 4231 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2267 4232 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2268 4233 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2269 4234 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2270 4235 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2271 4236 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2272 4237 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2273 4238 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2274 4239 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
2275 4240 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
2276 4241 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
2277 4242 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
2278 4243 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2279 4244 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
2280 4245 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
2281 4246 7.555087 ACTTGTCATCAAAATGGACAAAAAGA 58.445 30.769 7.70 0.00 34.98 2.52
2282 4247 7.707893 ACTTGTCATCAAAATGGACAAAAAGAG 59.292 33.333 7.70 0.00 34.98 2.85
2283 4248 7.345422 TGTCATCAAAATGGACAAAAAGAGA 57.655 32.000 0.00 0.00 33.42 3.10
2284 4249 7.954835 TGTCATCAAAATGGACAAAAAGAGAT 58.045 30.769 0.00 0.00 33.42 2.75
2285 4250 7.868922 TGTCATCAAAATGGACAAAAAGAGATG 59.131 33.333 0.00 0.00 33.42 2.90
2286 4251 7.869429 GTCATCAAAATGGACAAAAAGAGATGT 59.131 33.333 0.00 0.00 33.42 3.06
2287 4252 9.076781 TCATCAAAATGGACAAAAAGAGATGTA 57.923 29.630 0.00 0.00 33.42 2.29
2288 4253 9.865321 CATCAAAATGGACAAAAAGAGATGTAT 57.135 29.630 0.00 0.00 0.00 2.29
2290 4255 9.300681 TCAAAATGGACAAAAAGAGATGTATCT 57.699 29.630 0.00 0.00 40.50 1.98
2295 4260 9.606631 ATGGACAAAAAGAGATGTATCTAGAAC 57.393 33.333 0.00 0.00 37.25 3.01
2296 4261 8.816894 TGGACAAAAAGAGATGTATCTAGAACT 58.183 33.333 0.00 0.00 37.25 3.01
2317 4282 9.028185 AGAACTAAAATACGTCGAAATACATCC 57.972 33.333 0.00 0.00 0.00 3.51
2318 4283 7.704789 ACTAAAATACGTCGAAATACATCCC 57.295 36.000 0.00 0.00 0.00 3.85
2319 4284 5.996669 AAAATACGTCGAAATACATCCCC 57.003 39.130 0.00 0.00 0.00 4.81
2320 4285 4.950205 AATACGTCGAAATACATCCCCT 57.050 40.909 0.00 0.00 0.00 4.79
2321 4286 4.950205 ATACGTCGAAATACATCCCCTT 57.050 40.909 0.00 0.00 0.00 3.95
2322 4287 3.622166 ACGTCGAAATACATCCCCTTT 57.378 42.857 0.00 0.00 0.00 3.11
2323 4288 3.946606 ACGTCGAAATACATCCCCTTTT 58.053 40.909 0.00 0.00 0.00 2.27
2324 4289 5.088680 ACGTCGAAATACATCCCCTTTTA 57.911 39.130 0.00 0.00 0.00 1.52
2325 4290 5.677567 ACGTCGAAATACATCCCCTTTTAT 58.322 37.500 0.00 0.00 0.00 1.40
2326 4291 5.756833 ACGTCGAAATACATCCCCTTTTATC 59.243 40.000 0.00 0.00 0.00 1.75
2327 4292 5.989777 CGTCGAAATACATCCCCTTTTATCT 59.010 40.000 0.00 0.00 0.00 1.98
2328 4293 7.149973 CGTCGAAATACATCCCCTTTTATCTA 58.850 38.462 0.00 0.00 0.00 1.98
2329 4294 7.817962 CGTCGAAATACATCCCCTTTTATCTAT 59.182 37.037 0.00 0.00 0.00 1.98
2330 4295 9.503399 GTCGAAATACATCCCCTTTTATCTATT 57.497 33.333 0.00 0.00 0.00 1.73
2338 4303 9.136323 ACATCCCCTTTTATCTATTTTGATGAC 57.864 33.333 0.00 0.00 32.39 3.06
2339 4304 9.135189 CATCCCCTTTTATCTATTTTGATGACA 57.865 33.333 0.00 0.00 0.00 3.58
2340 4305 9.713684 ATCCCCTTTTATCTATTTTGATGACAA 57.286 29.630 0.00 0.00 0.00 3.18
2341 4306 9.189156 TCCCCTTTTATCTATTTTGATGACAAG 57.811 33.333 0.00 0.00 37.32 3.16
2342 4307 8.971073 CCCCTTTTATCTATTTTGATGACAAGT 58.029 33.333 0.00 0.00 37.32 3.16
2350 4315 8.208718 TCTATTTTGATGACAAGTATTTCCGG 57.791 34.615 0.00 0.00 37.32 5.14
2351 4316 8.044309 TCTATTTTGATGACAAGTATTTCCGGA 58.956 33.333 0.00 0.00 37.32 5.14
2352 4317 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2353 4318 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2354 4319 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2355 4320 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2356 4321 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2357 4322 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2358 4323 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2359 4324 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2360 4325 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2506 4917 4.040339 TGTTATTGTCTGCCTGTCTTCAGA 59.960 41.667 0.00 0.00 43.76 3.27
2514 4925 4.940046 TCTGCCTGTCTTCAGATTTTCATC 59.060 41.667 0.00 0.00 43.76 2.92
2625 5045 7.390823 TCACAGTAGTTTAGTCATTGGCATAA 58.609 34.615 0.00 0.00 0.00 1.90
2650 5077 0.879765 CAAGAAAGCTCTGCCCACAG 59.120 55.000 0.00 0.00 45.95 3.66
2651 5078 0.892814 AAGAAAGCTCTGCCCACAGC 60.893 55.000 0.00 0.00 44.10 4.40
2652 5079 2.282745 AAAGCTCTGCCCACAGCC 60.283 61.111 0.00 0.00 44.10 4.85
2656 5083 4.729918 CTCTGCCCACAGCCCCAC 62.730 72.222 0.00 0.00 44.10 4.61
2660 5087 3.646715 GCCCACAGCCCCACACTA 61.647 66.667 0.00 0.00 34.35 2.74
2661 5088 2.351276 CCCACAGCCCCACACTAC 59.649 66.667 0.00 0.00 0.00 2.73
2662 5089 2.351276 CCACAGCCCCACACTACC 59.649 66.667 0.00 0.00 0.00 3.18
2663 5090 2.525124 CCACAGCCCCACACTACCA 61.525 63.158 0.00 0.00 0.00 3.25
2664 5091 1.685224 CACAGCCCCACACTACCAT 59.315 57.895 0.00 0.00 0.00 3.55
2665 5092 0.677731 CACAGCCCCACACTACCATG 60.678 60.000 0.00 0.00 0.00 3.66
2755 5204 8.567948 AGTTGCGACCATATAATAAATGGAAAG 58.432 33.333 9.02 1.63 45.77 2.62
2770 5219 6.610741 AATGGAAAGAAATATGCTCGAGAC 57.389 37.500 18.75 8.32 0.00 3.36
2771 5220 4.442706 TGGAAAGAAATATGCTCGAGACC 58.557 43.478 18.75 0.00 0.00 3.85
2773 5222 4.747605 GGAAAGAAATATGCTCGAGACCTC 59.252 45.833 18.75 0.00 0.00 3.85
2850 5493 6.636850 GCAATAGCAATTTGTATCCTTAACGG 59.363 38.462 0.00 0.00 41.58 4.44
3003 5651 8.893219 TCAAGATAACAATGCAATCTAGTAGG 57.107 34.615 0.00 0.00 29.89 3.18
3093 5924 9.868277 TTAAAAACAATGAGCAAGAAAAGAGAA 57.132 25.926 0.00 0.00 0.00 2.87
3108 5939 6.878389 AGAAAAGAGAAGGAAGTCATGACATC 59.122 38.462 27.02 23.51 0.00 3.06
3109 5940 6.371595 AAAGAGAAGGAAGTCATGACATCT 57.628 37.500 27.02 19.49 30.49 2.90
3110 5941 7.487822 AAAGAGAAGGAAGTCATGACATCTA 57.512 36.000 27.02 0.00 30.49 1.98
3137 5968 9.396022 CTAGTTGGCAAATATCCTCTCTAAAAA 57.604 33.333 7.95 0.00 0.00 1.94
3163 5994 1.348036 GGATATCCCCTTTCAGGTCGG 59.652 57.143 11.02 0.00 31.93 4.79
3191 6034 5.527582 TGTCAGAGCTAAAGGAAAAGAACAC 59.472 40.000 0.00 0.00 0.00 3.32
3302 6171 0.321298 TTGAGCGTTGGCCTAACTCC 60.321 55.000 3.32 1.46 41.24 3.85
3512 6399 4.238514 GGCAGTTGTTGTTGTTGTTGTTA 58.761 39.130 0.00 0.00 0.00 2.41
3514 6401 5.388994 GGCAGTTGTTGTTGTTGTTGTTAAC 60.389 40.000 0.00 0.00 0.00 2.01
3528 6415 4.387256 TGTTGTTAACAAACACAAGCAAGC 59.613 37.500 22.14 6.44 38.72 4.01
3529 6416 4.448537 TGTTAACAAACACAAGCAAGCT 57.551 36.364 5.64 0.00 0.00 3.74
3532 6419 3.806625 AACAAACACAAGCAAGCTCAT 57.193 38.095 0.00 0.00 0.00 2.90
3533 6420 4.916983 AACAAACACAAGCAAGCTCATA 57.083 36.364 0.00 0.00 0.00 2.15
3534 6421 4.228912 ACAAACACAAGCAAGCTCATAC 57.771 40.909 0.00 0.00 0.00 2.39
3538 6426 2.012673 CACAAGCAAGCTCATACTCCC 58.987 52.381 0.00 0.00 0.00 4.30
3550 6438 4.042187 GCTCATACTCCCCCATTATGAAGT 59.958 45.833 0.00 0.00 33.00 3.01
3552 6440 6.590656 TCATACTCCCCCATTATGAAGTTT 57.409 37.500 0.00 0.00 30.88 2.66
3553 6441 6.601332 TCATACTCCCCCATTATGAAGTTTC 58.399 40.000 0.00 0.00 30.88 2.78
3564 6452 9.716507 CCCATTATGAAGTTTCTTATTGTAACG 57.283 33.333 0.00 0.00 32.26 3.18
3581 6469 6.040209 TGTAACGTGTAAGTCCACCATTAT 57.960 37.500 0.00 0.00 31.47 1.28
3588 6476 7.332678 ACGTGTAAGTCCACCATTATAAAACTC 59.667 37.037 0.00 0.00 31.47 3.01
3592 6480 5.671493 AGTCCACCATTATAAAACTCCTCG 58.329 41.667 0.00 0.00 0.00 4.63
3593 6481 5.189145 AGTCCACCATTATAAAACTCCTCGT 59.811 40.000 0.00 0.00 0.00 4.18
3619 6513 7.760131 TTACGTTTACCTTGTCTATATGTGC 57.240 36.000 0.00 0.00 0.00 4.57
3620 6514 5.726397 ACGTTTACCTTGTCTATATGTGCA 58.274 37.500 0.00 0.00 0.00 4.57
3621 6515 5.810587 ACGTTTACCTTGTCTATATGTGCAG 59.189 40.000 0.00 0.00 0.00 4.41
3622 6516 5.810587 CGTTTACCTTGTCTATATGTGCAGT 59.189 40.000 0.00 0.00 0.00 4.40
3623 6517 6.237835 CGTTTACCTTGTCTATATGTGCAGTG 60.238 42.308 0.00 0.00 0.00 3.66
3772 6666 2.730550 TTCGGTCTTCGGTCTTTACC 57.269 50.000 0.00 0.00 42.95 2.85
4201 7110 4.829064 TGGCAACATAGAACTTGACAAC 57.171 40.909 0.00 0.00 46.17 3.32
4202 7111 4.203226 TGGCAACATAGAACTTGACAACA 58.797 39.130 0.00 0.00 46.17 3.33
4203 7112 4.826733 TGGCAACATAGAACTTGACAACAT 59.173 37.500 0.00 0.00 46.17 2.71
4204 7113 6.000840 TGGCAACATAGAACTTGACAACATA 58.999 36.000 0.00 0.00 46.17 2.29
4205 7114 6.149308 TGGCAACATAGAACTTGACAACATAG 59.851 38.462 0.00 0.00 46.17 2.23
4206 7115 6.371548 GGCAACATAGAACTTGACAACATAGA 59.628 38.462 0.00 0.00 0.00 1.98
4207 7116 7.094805 GGCAACATAGAACTTGACAACATAGAA 60.095 37.037 0.00 0.00 0.00 2.10
4208 7117 7.746475 GCAACATAGAACTTGACAACATAGAAC 59.254 37.037 0.00 0.00 0.00 3.01
4209 7118 8.993121 CAACATAGAACTTGACAACATAGAACT 58.007 33.333 0.00 0.00 0.00 3.01
4210 7119 9.561069 AACATAGAACTTGACAACATAGAACTT 57.439 29.630 0.00 0.00 0.00 2.66
4211 7120 8.993121 ACATAGAACTTGACAACATAGAACTTG 58.007 33.333 0.00 0.00 0.00 3.16
4212 7121 9.208022 CATAGAACTTGACAACATAGAACTTGA 57.792 33.333 0.00 0.00 0.00 3.02
4213 7122 7.484035 AGAACTTGACAACATAGAACTTGAC 57.516 36.000 0.00 0.00 0.00 3.18
4214 7123 7.047891 AGAACTTGACAACATAGAACTTGACA 58.952 34.615 0.00 0.00 0.00 3.58
4215 7124 7.716998 AGAACTTGACAACATAGAACTTGACAT 59.283 33.333 0.00 0.00 0.00 3.06
4216 7125 7.194607 ACTTGACAACATAGAACTTGACATG 57.805 36.000 0.00 0.00 0.00 3.21
4217 7126 6.992123 ACTTGACAACATAGAACTTGACATGA 59.008 34.615 0.00 0.00 0.00 3.07
4282 7191 6.377327 ACAACAAACATTAAGGTCTCACAG 57.623 37.500 0.00 0.00 0.00 3.66
4337 7253 6.873076 TCAAGTCACAAATCAAAAGCAAAAGT 59.127 30.769 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.530870 GAGCTCCGCCAACTACATCC 60.531 60.000 0.87 0.00 0.00 3.51
33 34 0.898326 TCAGAGCTCCGCCAACTACA 60.898 55.000 10.93 0.00 0.00 2.74
52 53 0.693049 GGGATGGCGGGAATCTATGT 59.307 55.000 0.00 0.00 0.00 2.29
54 55 1.673767 ATGGGATGGCGGGAATCTAT 58.326 50.000 0.00 0.00 0.00 1.98
70 71 2.563179 CCTACCCTCACGATCCTAATGG 59.437 54.545 0.00 0.00 0.00 3.16
77 78 2.235402 TGAAAACCCTACCCTCACGATC 59.765 50.000 0.00 0.00 0.00 3.69
78 79 2.262637 TGAAAACCCTACCCTCACGAT 58.737 47.619 0.00 0.00 0.00 3.73
79 80 1.719529 TGAAAACCCTACCCTCACGA 58.280 50.000 0.00 0.00 0.00 4.35
80 81 2.629051 GATGAAAACCCTACCCTCACG 58.371 52.381 0.00 0.00 0.00 4.35
98 99 2.094494 AGTGCGAATCTCTTCACACGAT 60.094 45.455 0.00 0.00 45.08 3.73
100 101 1.702886 AGTGCGAATCTCTTCACACG 58.297 50.000 0.00 0.00 45.08 4.49
114 115 5.978322 GGATAGGTCTAAACTCTAAAGTGCG 59.022 44.000 0.00 0.00 35.36 5.34
116 117 7.982354 CCTTGGATAGGTCTAAACTCTAAAGTG 59.018 40.741 0.00 0.00 39.39 3.16
117 118 7.125963 CCCTTGGATAGGTCTAAACTCTAAAGT 59.874 40.741 0.00 0.00 43.07 2.66
118 119 7.125963 ACCCTTGGATAGGTCTAAACTCTAAAG 59.874 40.741 0.00 0.00 43.07 1.85
120 121 6.509386 ACCCTTGGATAGGTCTAAACTCTAA 58.491 40.000 0.00 0.00 43.07 2.10
121 122 6.101274 ACCCTTGGATAGGTCTAAACTCTA 57.899 41.667 0.00 0.00 43.07 2.43
122 123 4.961585 ACCCTTGGATAGGTCTAAACTCT 58.038 43.478 0.00 0.00 43.07 3.24
124 125 5.098663 TGAACCCTTGGATAGGTCTAAACT 58.901 41.667 0.00 0.00 43.07 2.66
126 127 5.570034 CGTTGAACCCTTGGATAGGTCTAAA 60.570 44.000 0.00 0.00 43.07 1.85
129 130 2.236395 CGTTGAACCCTTGGATAGGTCT 59.764 50.000 0.00 0.00 43.07 3.85
130 131 2.629051 CGTTGAACCCTTGGATAGGTC 58.371 52.381 0.00 0.00 43.07 3.85
131 132 1.280998 CCGTTGAACCCTTGGATAGGT 59.719 52.381 0.00 0.00 43.07 3.08
132 133 2.017113 GCCGTTGAACCCTTGGATAGG 61.017 57.143 0.00 0.00 44.33 2.57
137 142 1.852067 CTTCGCCGTTGAACCCTTGG 61.852 60.000 0.00 0.00 0.00 3.61
143 148 0.706729 CGTACTCTTCGCCGTTGAAC 59.293 55.000 0.00 0.00 0.00 3.18
153 158 3.506844 AGTTCCTTGGAGTCGTACTCTTC 59.493 47.826 12.62 0.00 44.46 2.87
158 163 1.617357 ACCAGTTCCTTGGAGTCGTAC 59.383 52.381 0.00 0.00 40.87 3.67
162 167 1.605712 CGTCACCAGTTCCTTGGAGTC 60.606 57.143 0.00 0.00 40.87 3.36
163 168 0.393077 CGTCACCAGTTCCTTGGAGT 59.607 55.000 0.00 0.00 40.87 3.85
172 177 2.116827 TTTTGTGGACGTCACCAGTT 57.883 45.000 18.91 0.00 45.48 3.16
184 189 0.031994 CAGCCGGGAAGTTTTTGTGG 59.968 55.000 2.18 0.00 0.00 4.17
191 196 1.079127 CGATGACAGCCGGGAAGTT 60.079 57.895 2.18 0.00 0.00 2.66
193 198 1.519455 GTCGATGACAGCCGGGAAG 60.519 63.158 2.18 0.00 32.09 3.46
199 204 0.037326 TGACCTTGTCGATGACAGCC 60.037 55.000 0.00 0.00 43.69 4.85
203 208 1.728971 CAGCTTGACCTTGTCGATGAC 59.271 52.381 0.00 0.00 34.95 3.06
229 234 1.269309 CGCTATCAGCACTCCACTACC 60.269 57.143 0.00 0.00 42.58 3.18
239 244 2.579518 CACGCGTCGCTATCAGCA 60.580 61.111 9.86 0.00 42.58 4.41
241 246 2.849966 GCACACGCGTCGCTATCAG 61.850 63.158 20.02 5.25 0.00 2.90
257 262 3.436924 TCGCTAGAACGAGCCGCA 61.437 61.111 0.00 0.00 39.43 5.69
264 269 3.237660 CGAACAGTATTGTCGCTAGAACG 59.762 47.826 0.00 0.00 36.23 3.95
270 275 1.983605 CGAACGAACAGTATTGTCGCT 59.016 47.619 9.09 0.08 36.23 4.93
271 276 1.058695 CCGAACGAACAGTATTGTCGC 59.941 52.381 9.09 0.00 36.23 5.19
276 281 5.334569 CCAAAATCACCGAACGAACAGTATT 60.335 40.000 0.00 0.00 0.00 1.89
277 282 4.153475 CCAAAATCACCGAACGAACAGTAT 59.847 41.667 0.00 0.00 0.00 2.12
280 285 2.546368 TCCAAAATCACCGAACGAACAG 59.454 45.455 0.00 0.00 0.00 3.16
283 288 3.566322 ACATTCCAAAATCACCGAACGAA 59.434 39.130 0.00 0.00 0.00 3.85
289 294 5.371115 ACACTAACATTCCAAAATCACCG 57.629 39.130 0.00 0.00 0.00 4.94
319 324 6.824305 AGTACAAAGCAGCTCAAACATAAT 57.176 33.333 0.00 0.00 0.00 1.28
331 336 8.886719 TCAAATATCATCAGAAGTACAAAGCAG 58.113 33.333 0.00 0.00 0.00 4.24
365 370 5.793817 TCTTTTTCTCGAACATGATCCAGA 58.206 37.500 0.00 0.00 0.00 3.86
448 453 9.498307 GAGACGAAATTTGAACTAAAAGTTTCA 57.502 29.630 0.00 0.00 38.80 2.69
450 455 9.849166 TTGAGACGAAATTTGAACTAAAAGTTT 57.151 25.926 0.00 0.00 38.80 2.66
464 469 8.455682 TGTACTTTCAAACTTTGAGACGAAATT 58.544 29.630 4.43 0.00 41.38 1.82
466 471 7.118680 ACTGTACTTTCAAACTTTGAGACGAAA 59.881 33.333 4.43 0.00 41.38 3.46
480 485 5.091552 AGGATCAGGGTACTGTACTTTCAA 58.908 41.667 16.79 1.45 45.14 2.69
491 496 9.895138 TTTGTACTAATTAAAGGATCAGGGTAC 57.105 33.333 0.00 0.00 0.00 3.34
527 532 8.803397 ACCACTATTTTTCTAACCATCTAACC 57.197 34.615 0.00 0.00 0.00 2.85
531 536 8.778059 TGGATACCACTATTTTTCTAACCATCT 58.222 33.333 0.00 0.00 0.00 2.90
532 537 8.974060 TGGATACCACTATTTTTCTAACCATC 57.026 34.615 0.00 0.00 0.00 3.51
556 561 3.143728 ACTTAAACTTTAGTGGGCCGTG 58.856 45.455 0.00 0.00 0.00 4.94
559 564 7.514784 TTTAGAACTTAAACTTTAGTGGGCC 57.485 36.000 0.00 0.00 0.00 5.80
560 565 9.976511 AAATTTAGAACTTAAACTTTAGTGGGC 57.023 29.630 0.00 0.00 0.00 5.36
576 581 8.347729 ACGAACACCAAAATCAAATTTAGAAC 57.652 30.769 0.00 0.00 0.00 3.01
585 590 8.812329 CAAGAAAAATACGAACACCAAAATCAA 58.188 29.630 0.00 0.00 0.00 2.57
608 613 7.813148 TCGTCAGAAGGTCTAAAATAACTCAAG 59.187 37.037 0.00 0.00 0.00 3.02
609 614 7.663827 TCGTCAGAAGGTCTAAAATAACTCAA 58.336 34.615 0.00 0.00 0.00 3.02
610 615 7.223260 TCGTCAGAAGGTCTAAAATAACTCA 57.777 36.000 0.00 0.00 0.00 3.41
611 616 7.760340 ACATCGTCAGAAGGTCTAAAATAACTC 59.240 37.037 0.00 0.00 0.00 3.01
612 617 7.545965 CACATCGTCAGAAGGTCTAAAATAACT 59.454 37.037 0.00 0.00 0.00 2.24
613 618 7.674240 GCACATCGTCAGAAGGTCTAAAATAAC 60.674 40.741 0.00 0.00 0.00 1.89
633 638 2.354109 TCTCTGACTGAACGCACATC 57.646 50.000 0.00 0.00 0.00 3.06
636 641 2.423926 TCTTCTCTGACTGAACGCAC 57.576 50.000 0.00 0.00 0.00 5.34
640 645 5.463724 ACGAAAACATCTTCTCTGACTGAAC 59.536 40.000 0.00 0.00 0.00 3.18
647 652 3.742882 TGCTGACGAAAACATCTTCTCTG 59.257 43.478 0.00 0.00 0.00 3.35
648 653 3.995199 TGCTGACGAAAACATCTTCTCT 58.005 40.909 0.00 0.00 0.00 3.10
657 662 1.852280 GCCTTTGTTGCTGACGAAAAC 59.148 47.619 0.00 0.00 31.27 2.43
662 667 0.248458 AAACGCCTTTGTTGCTGACG 60.248 50.000 0.00 0.00 31.10 4.35
666 671 1.336795 GCCATAAACGCCTTTGTTGCT 60.337 47.619 0.00 0.00 31.10 3.91
667 672 1.067693 GCCATAAACGCCTTTGTTGC 58.932 50.000 0.00 0.00 31.10 4.17
676 681 2.075761 ACGAAGTCGCCATAAACGC 58.924 52.632 0.00 0.00 44.43 4.84
703 708 0.833287 ACTAGGCCAACGCATCATCT 59.167 50.000 5.01 0.00 36.38 2.90
723 728 7.614192 CCTTATCCCTAGGAGCACTTTTAAAAA 59.386 37.037 11.48 0.00 34.05 1.94
738 743 2.738643 CGCACACACACCTTATCCCTAG 60.739 54.545 0.00 0.00 0.00 3.02
742 747 0.796312 CACGCACACACACCTTATCC 59.204 55.000 0.00 0.00 0.00 2.59
763 768 5.220472 CGCATATACATTCGCCCTTATGAAG 60.220 44.000 0.00 0.00 0.00 3.02
764 769 4.629634 CGCATATACATTCGCCCTTATGAA 59.370 41.667 0.00 0.00 0.00 2.57
765 770 4.180817 CGCATATACATTCGCCCTTATGA 58.819 43.478 0.00 0.00 0.00 2.15
766 771 3.242413 GCGCATATACATTCGCCCTTATG 60.242 47.826 0.30 0.00 41.53 1.90
768 773 2.289133 TGCGCATATACATTCGCCCTTA 60.289 45.455 5.66 0.00 46.14 2.69
773 778 2.413112 AGACATGCGCATATACATTCGC 59.587 45.455 24.84 0.00 46.78 4.70
774 779 5.761818 TTAGACATGCGCATATACATTCG 57.238 39.130 24.84 10.64 0.00 3.34
777 782 6.755607 CAGAGATTAGACATGCGCATATACAT 59.244 38.462 24.84 11.52 0.00 2.29
787 792 5.869753 AACACAACAGAGATTAGACATGC 57.130 39.130 0.00 0.00 0.00 4.06
797 802 8.934023 AAGGGATTATTTTAACACAACAGAGA 57.066 30.769 0.00 0.00 0.00 3.10
814 819 9.699703 GTTTTTGTTGCACTAATTAAGGGATTA 57.300 29.630 0.00 0.00 0.00 1.75
816 821 7.158697 GGTTTTTGTTGCACTAATTAAGGGAT 58.841 34.615 0.00 0.00 0.00 3.85
817 822 6.098409 TGGTTTTTGTTGCACTAATTAAGGGA 59.902 34.615 0.00 0.00 0.00 4.20
818 823 6.284459 TGGTTTTTGTTGCACTAATTAAGGG 58.716 36.000 0.00 0.00 0.00 3.95
835 841 5.127031 CGGTCCCATCATTTCTATGGTTTTT 59.873 40.000 0.00 0.00 42.06 1.94
836 842 4.644685 CGGTCCCATCATTTCTATGGTTTT 59.355 41.667 0.00 0.00 42.06 2.43
854 860 0.169451 CCGCAATTGGTAAACGGTCC 59.831 55.000 7.72 0.00 39.05 4.46
855 861 0.455464 GCCGCAATTGGTAAACGGTC 60.455 55.000 18.59 10.15 45.53 4.79
866 880 3.361977 GTGACGTGGGCCGCAATT 61.362 61.111 18.64 0.00 41.42 2.32
893 907 2.744709 TTTTCTAGCCGTGGCCGC 60.745 61.111 6.11 6.11 43.17 6.53
899 913 1.672145 GGCGAGTTCTTTTCTAGCCGT 60.672 52.381 1.86 0.00 41.95 5.68
906 920 1.206831 GTGGCGGCGAGTTCTTTTC 59.793 57.895 12.98 0.00 0.00 2.29
923 937 2.223711 GGTTGTTTGCACAAAGATCGGT 60.224 45.455 0.00 0.00 44.72 4.69
953 973 2.115427 TGGGGTAATTGATCGAGCAGA 58.885 47.619 2.57 0.00 0.00 4.26
1090 1130 3.467226 ATGTTCGGACGCGGGGAT 61.467 61.111 12.47 0.00 0.00 3.85
1530 3050 9.887406 CAAAGTTTAATCTTAATACGTGTGGTT 57.113 29.630 0.00 0.00 0.00 3.67
1587 3108 9.295825 TGGTACCATTCATCAATAAATCCATAC 57.704 33.333 11.60 0.00 0.00 2.39
1598 3119 7.715266 TGAATCAAATGGTACCATTCATCAA 57.285 32.000 34.67 20.38 44.86 2.57
1685 3463 3.895232 AACTCTGACGCTACAATCCAT 57.105 42.857 0.00 0.00 0.00 3.41
1773 3676 3.739519 CGAATGGCTGAGGGACTAAGAAG 60.740 52.174 0.00 0.00 40.10 2.85
1774 3677 2.168521 CGAATGGCTGAGGGACTAAGAA 59.831 50.000 0.00 0.00 40.10 2.52
1775 3678 1.757118 CGAATGGCTGAGGGACTAAGA 59.243 52.381 0.00 0.00 40.10 2.10
1776 3679 1.482593 ACGAATGGCTGAGGGACTAAG 59.517 52.381 0.00 0.00 41.55 2.18
1777 3680 1.207089 CACGAATGGCTGAGGGACTAA 59.793 52.381 0.00 0.00 41.55 2.24
1778 3681 0.824109 CACGAATGGCTGAGGGACTA 59.176 55.000 0.00 0.00 41.55 2.59
1916 3821 1.308069 CGTCCCTCATTGGTGCTTGG 61.308 60.000 0.00 0.00 0.00 3.61
1933 3838 0.319900 GAGGATGCATATCACGCCGT 60.320 55.000 0.00 0.00 34.90 5.68
2014 3919 1.267806 ACAGCACAAAAATCTCTGGCG 59.732 47.619 0.00 0.00 0.00 5.69
2031 3937 9.784680 AACATATCTTTAACGACACTACTACAG 57.215 33.333 0.00 0.00 0.00 2.74
2077 3984 2.335712 GGAGCGCCTTTCCAACTGG 61.336 63.158 2.29 0.00 34.74 4.00
2156 4063 5.474532 ACAGAATGCAACTGAAGCTTATTCA 59.525 36.000 24.24 3.09 42.53 2.57
2236 4201 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2237 4202 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2238 4203 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2239 4204 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2240 4205 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2241 4206 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2242 4207 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2243 4208 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2244 4209 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2245 4210 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2246 4211 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2247 4212 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2248 4213 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
2249 4214 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
2250 4215 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
2251 4216 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
2252 4217 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2253 4218 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
2254 4219 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
2255 4220 8.690884 TCTTTTTGTCCATTTTGATGACAAGTA 58.309 29.630 0.00 0.00 37.13 2.24
2256 4221 7.555087 TCTTTTTGTCCATTTTGATGACAAGT 58.445 30.769 0.00 0.00 37.13 3.16
2257 4222 7.922278 TCTCTTTTTGTCCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.13 3.16
2258 4223 7.780064 TCTCTTTTTGTCCATTTTGATGACAA 58.220 30.769 0.00 0.00 34.47 3.18
2259 4224 7.345422 TCTCTTTTTGTCCATTTTGATGACA 57.655 32.000 0.00 0.00 0.00 3.58
2260 4225 7.869429 ACATCTCTTTTTGTCCATTTTGATGAC 59.131 33.333 0.00 0.00 33.85 3.06
2261 4226 7.954835 ACATCTCTTTTTGTCCATTTTGATGA 58.045 30.769 0.00 0.00 33.85 2.92
2262 4227 9.865321 ATACATCTCTTTTTGTCCATTTTGATG 57.135 29.630 0.00 0.00 35.23 3.07
2264 4229 9.300681 AGATACATCTCTTTTTGTCCATTTTGA 57.699 29.630 0.00 0.00 29.30 2.69
2269 4234 9.606631 GTTCTAGATACATCTCTTTTTGTCCAT 57.393 33.333 0.00 0.00 38.32 3.41
2270 4235 8.816894 AGTTCTAGATACATCTCTTTTTGTCCA 58.183 33.333 0.00 0.00 38.32 4.02
2291 4256 9.028185 GGATGTATTTCGACGTATTTTAGTTCT 57.972 33.333 0.00 0.00 0.00 3.01
2292 4257 8.271487 GGGATGTATTTCGACGTATTTTAGTTC 58.729 37.037 0.00 0.00 0.00 3.01
2293 4258 7.225341 GGGGATGTATTTCGACGTATTTTAGTT 59.775 37.037 0.00 0.00 0.00 2.24
2294 4259 6.703165 GGGGATGTATTTCGACGTATTTTAGT 59.297 38.462 0.00 0.00 0.00 2.24
2295 4260 6.927381 AGGGGATGTATTTCGACGTATTTTAG 59.073 38.462 0.00 0.00 0.00 1.85
2296 4261 6.819284 AGGGGATGTATTTCGACGTATTTTA 58.181 36.000 0.00 0.00 0.00 1.52
2297 4262 5.677567 AGGGGATGTATTTCGACGTATTTT 58.322 37.500 0.00 0.00 0.00 1.82
2298 4263 5.286267 AGGGGATGTATTTCGACGTATTT 57.714 39.130 0.00 0.00 0.00 1.40
2299 4264 4.950205 AGGGGATGTATTTCGACGTATT 57.050 40.909 0.00 0.00 0.00 1.89
2300 4265 4.950205 AAGGGGATGTATTTCGACGTAT 57.050 40.909 0.00 0.00 0.00 3.06
2301 4266 4.741321 AAAGGGGATGTATTTCGACGTA 57.259 40.909 0.00 0.00 0.00 3.57
2302 4267 3.622166 AAAGGGGATGTATTTCGACGT 57.378 42.857 0.00 0.00 0.00 4.34
2303 4268 5.989777 AGATAAAAGGGGATGTATTTCGACG 59.010 40.000 0.00 0.00 0.00 5.12
2304 4269 9.503399 AATAGATAAAAGGGGATGTATTTCGAC 57.497 33.333 0.00 0.00 0.00 4.20
2312 4277 9.136323 GTCATCAAAATAGATAAAAGGGGATGT 57.864 33.333 0.00 0.00 32.47 3.06
2313 4278 9.135189 TGTCATCAAAATAGATAAAAGGGGATG 57.865 33.333 0.00 0.00 0.00 3.51
2314 4279 9.713684 TTGTCATCAAAATAGATAAAAGGGGAT 57.286 29.630 0.00 0.00 0.00 3.85
2315 4280 9.189156 CTTGTCATCAAAATAGATAAAAGGGGA 57.811 33.333 0.00 0.00 32.87 4.81
2316 4281 8.971073 ACTTGTCATCAAAATAGATAAAAGGGG 58.029 33.333 0.00 0.00 32.87 4.79
2324 4289 8.840321 CCGGAAATACTTGTCATCAAAATAGAT 58.160 33.333 0.00 0.00 32.87 1.98
2325 4290 8.044309 TCCGGAAATACTTGTCATCAAAATAGA 58.956 33.333 0.00 0.00 32.87 1.98
2326 4291 8.122952 GTCCGGAAATACTTGTCATCAAAATAG 58.877 37.037 5.23 0.00 32.87 1.73
2327 4292 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
2328 4293 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2329 4294 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2330 4295 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2331 4296 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2332 4297 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2333 4298 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2334 4299 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2335 4300 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2336 4301 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2337 4302 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2338 4303 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2339 4304 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2340 4305 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2341 4306 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2342 4307 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2343 4308 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2344 4309 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2345 4310 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2346 4311 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
2347 4312 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
2348 4313 1.379576 AAGGTACTCCCTCCGTCCG 60.380 63.158 0.00 0.00 45.47 4.79
2349 4314 0.324091 TGAAGGTACTCCCTCCGTCC 60.324 60.000 0.00 0.00 45.47 4.79
2350 4315 1.477295 CTTGAAGGTACTCCCTCCGTC 59.523 57.143 0.00 0.00 45.47 4.79
2351 4316 1.076677 TCTTGAAGGTACTCCCTCCGT 59.923 52.381 0.00 0.00 45.47 4.69
2352 4317 1.848652 TCTTGAAGGTACTCCCTCCG 58.151 55.000 0.00 0.00 45.47 4.63
2353 4318 4.565861 CCTTTTCTTGAAGGTACTCCCTCC 60.566 50.000 0.00 0.00 45.47 4.30
2354 4319 4.286291 TCCTTTTCTTGAAGGTACTCCCTC 59.714 45.833 3.80 0.00 45.47 4.30
2356 4321 4.635699 TCCTTTTCTTGAAGGTACTCCC 57.364 45.455 3.80 0.00 45.24 4.30
2357 4322 8.631480 TTATTTCCTTTTCTTGAAGGTACTCC 57.369 34.615 3.80 0.00 45.24 3.85
2359 4324 8.523658 GCATTATTTCCTTTTCTTGAAGGTACT 58.476 33.333 3.80 0.00 45.24 2.73
2360 4325 7.759886 GGCATTATTTCCTTTTCTTGAAGGTAC 59.240 37.037 3.80 0.00 45.24 3.34
2469 4437 8.690840 GCAGACAATAACATTACAAAACTCAAC 58.309 33.333 0.00 0.00 0.00 3.18
2484 4452 4.569943 TCTGAAGACAGGCAGACAATAAC 58.430 43.478 0.00 0.00 43.60 1.89
2514 4925 7.543756 ACCACATTTTTCTGGAATTATAACCG 58.456 34.615 0.00 0.00 0.00 4.44
2608 5028 6.862209 TGGACAATTATGCCAATGACTAAAC 58.138 36.000 0.00 0.00 32.25 2.01
2625 5045 2.165998 GGCAGAGCTTTCTTGGACAAT 58.834 47.619 0.00 0.00 0.00 2.71
2650 5077 1.452108 GCTCATGGTAGTGTGGGGC 60.452 63.158 0.00 0.00 0.00 5.80
2651 5078 1.224592 GGCTCATGGTAGTGTGGGG 59.775 63.158 0.00 0.00 0.00 4.96
2652 5079 0.548031 ATGGCTCATGGTAGTGTGGG 59.452 55.000 0.00 0.00 0.00 4.61
2654 5081 4.060900 GACATATGGCTCATGGTAGTGTG 58.939 47.826 7.80 0.00 0.00 3.82
2656 5083 4.341366 TGACATATGGCTCATGGTAGTG 57.659 45.455 10.60 0.00 0.00 2.74
2657 5084 4.594491 TGATGACATATGGCTCATGGTAGT 59.406 41.667 10.60 0.00 0.00 2.73
2659 5086 5.767277 ATGATGACATATGGCTCATGGTA 57.233 39.130 17.57 5.41 34.71 3.25
2660 5087 4.652679 ATGATGACATATGGCTCATGGT 57.347 40.909 17.57 4.41 34.71 3.55
2661 5088 4.765339 ACAATGATGACATATGGCTCATGG 59.235 41.667 18.48 17.89 35.50 3.66
2662 5089 5.959618 ACAATGATGACATATGGCTCATG 57.040 39.130 18.48 15.32 35.50 3.07
2663 5090 6.016527 GTGAACAATGATGACATATGGCTCAT 60.017 38.462 10.60 12.90 35.50 2.90
2664 5091 5.297527 GTGAACAATGATGACATATGGCTCA 59.702 40.000 10.60 11.18 35.50 4.26
2665 5092 5.297527 TGTGAACAATGATGACATATGGCTC 59.702 40.000 10.60 5.65 35.50 4.70
2707 5151 5.048713 ACTGGCAAGCAAGTAATGTTAGAAC 60.049 40.000 0.00 0.00 0.00 3.01
2710 5154 5.156355 CAACTGGCAAGCAAGTAATGTTAG 58.844 41.667 1.90 0.00 28.51 2.34
2770 5219 2.496070 TCTAAACCCACATCACTCGAGG 59.504 50.000 18.41 5.96 0.00 4.63
2771 5220 3.868757 TCTAAACCCACATCACTCGAG 57.131 47.619 11.84 11.84 0.00 4.04
2773 5222 4.392921 AGATCTAAACCCACATCACTCG 57.607 45.455 0.00 0.00 0.00 4.18
2774 5223 6.472686 ACTAGATCTAAACCCACATCACTC 57.527 41.667 3.57 0.00 0.00 3.51
2898 5541 9.533253 GCCATTGCATCTTAATAAAAACTATGT 57.467 29.630 0.00 0.00 37.47 2.29
2899 5542 9.531942 TGCCATTGCATCTTAATAAAAACTATG 57.468 29.630 0.00 0.00 44.23 2.23
2951 5598 2.369860 TGAACTTGTGAGATGGAGCAGT 59.630 45.455 0.00 0.00 0.00 4.40
3003 5651 1.333619 ACCACAAAACATGTCTCGTGC 59.666 47.619 13.31 0.00 41.46 5.34
3093 5924 6.097554 CCAACTAGTAGATGTCATGACTTCCT 59.902 42.308 28.71 23.03 36.49 3.36
3108 5939 7.296628 AGAGAGGATATTTGCCAACTAGTAG 57.703 40.000 0.00 0.00 0.00 2.57
3109 5940 8.777578 TTAGAGAGGATATTTGCCAACTAGTA 57.222 34.615 0.00 0.00 0.00 1.82
3110 5941 7.676683 TTAGAGAGGATATTTGCCAACTAGT 57.323 36.000 0.00 0.00 0.00 2.57
3137 5968 3.886123 CTGAAAGGGGATATCCGTGTTT 58.114 45.455 15.69 13.66 36.71 2.83
3163 5994 2.586258 TCCTTTAGCTCTGACATCGC 57.414 50.000 0.00 0.00 0.00 4.58
3191 6034 4.870426 AGTTGTACTTTGACCATATCAGCG 59.130 41.667 0.00 0.00 38.99 5.18
3302 6171 4.994852 TGTAACAGGAATCAGAAGAAACCG 59.005 41.667 0.00 0.00 0.00 4.44
3512 6399 3.806625 ATGAGCTTGCTTGTGTTTGTT 57.193 38.095 0.00 0.00 0.00 2.83
3514 6401 4.470462 GAGTATGAGCTTGCTTGTGTTTG 58.530 43.478 0.00 0.00 0.00 2.93
3525 6412 4.242811 TCATAATGGGGGAGTATGAGCTT 58.757 43.478 0.00 0.00 36.85 3.74
3526 6413 3.874316 TCATAATGGGGGAGTATGAGCT 58.126 45.455 0.00 0.00 36.85 4.09
3527 6414 4.042187 ACTTCATAATGGGGGAGTATGAGC 59.958 45.833 0.00 0.00 41.44 4.26
3528 6415 5.832539 ACTTCATAATGGGGGAGTATGAG 57.167 43.478 0.00 0.00 41.44 2.90
3529 6416 6.389869 AGAAACTTCATAATGGGGGAGTATGA 59.610 38.462 0.00 0.00 39.34 2.15
3532 6419 6.652205 AAGAAACTTCATAATGGGGGAGTA 57.348 37.500 0.00 0.00 0.00 2.59
3533 6420 5.536497 AAGAAACTTCATAATGGGGGAGT 57.464 39.130 0.00 0.00 0.00 3.85
3534 6421 7.561356 ACAATAAGAAACTTCATAATGGGGGAG 59.439 37.037 0.00 0.00 0.00 4.30
3538 6426 9.716507 CGTTACAATAAGAAACTTCATAATGGG 57.283 33.333 0.00 0.00 0.00 4.00
3550 6438 7.171337 GGTGGACTTACACGTTACAATAAGAAA 59.829 37.037 0.00 0.00 42.23 2.52
3552 6440 6.158598 GGTGGACTTACACGTTACAATAAGA 58.841 40.000 0.00 0.00 42.23 2.10
3553 6441 5.927689 TGGTGGACTTACACGTTACAATAAG 59.072 40.000 0.00 0.00 42.23 1.73
3564 6452 7.827729 AGGAGTTTTATAATGGTGGACTTACAC 59.172 37.037 0.00 0.00 40.60 2.90
3588 6476 4.746611 AGACAAGGTAAACGTAAAACGAGG 59.253 41.667 6.44 0.00 46.05 4.63
3592 6480 9.962759 CACATATAGACAAGGTAAACGTAAAAC 57.037 33.333 0.00 0.00 0.00 2.43
3593 6481 8.658609 GCACATATAGACAAGGTAAACGTAAAA 58.341 33.333 0.00 0.00 0.00 1.52
3596 6484 6.865411 TGCACATATAGACAAGGTAAACGTA 58.135 36.000 0.00 0.00 0.00 3.57
3597 6485 5.726397 TGCACATATAGACAAGGTAAACGT 58.274 37.500 0.00 0.00 0.00 3.99
3598 6486 5.810587 ACTGCACATATAGACAAGGTAAACG 59.189 40.000 0.00 0.00 0.00 3.60
3619 6513 4.636206 GGGCTTCCTTGTAATCTTACACTG 59.364 45.833 2.33 0.18 42.84 3.66
3620 6514 4.324331 GGGGCTTCCTTGTAATCTTACACT 60.324 45.833 2.33 0.00 42.84 3.55
3621 6515 3.945921 GGGGCTTCCTTGTAATCTTACAC 59.054 47.826 2.33 0.00 42.84 2.90
3622 6516 3.370103 CGGGGCTTCCTTGTAATCTTACA 60.370 47.826 0.00 0.00 41.56 2.41
3623 6517 3.203716 CGGGGCTTCCTTGTAATCTTAC 58.796 50.000 0.00 0.00 0.00 2.34
3731 6625 7.094549 CCGAATAGTGAATAACCAAAAAGACCA 60.095 37.037 0.00 0.00 0.00 4.02
3772 6666 0.530744 TCAGGACCGAAGACCGAATG 59.469 55.000 0.00 0.00 41.76 2.67
4182 7076 7.364522 TCTATGTTGTCAAGTTCTATGTTGC 57.635 36.000 0.00 0.00 0.00 4.17
4200 7109 9.683069 GATTTGTTTTCATGTCAAGTTCTATGT 57.317 29.630 0.00 0.00 0.00 2.29
4201 7110 9.681692 TGATTTGTTTTCATGTCAAGTTCTATG 57.318 29.630 0.00 0.00 0.00 2.23
4203 7112 9.734620 CTTGATTTGTTTTCATGTCAAGTTCTA 57.265 29.630 9.23 3.28 41.42 2.10
4204 7113 8.638685 CTTGATTTGTTTTCATGTCAAGTTCT 57.361 30.769 9.23 0.00 41.42 3.01
4209 7118 9.868277 ACTAAACTTGATTTGTTTTCATGTCAA 57.132 25.926 0.00 0.00 38.41 3.18
4215 7124 9.243637 GCATGTACTAAACTTGATTTGTTTTCA 57.756 29.630 0.00 0.00 38.41 2.69
4216 7125 9.463443 AGCATGTACTAAACTTGATTTGTTTTC 57.537 29.630 0.00 0.00 38.41 2.29
4217 7126 9.816354 AAGCATGTACTAAACTTGATTTGTTTT 57.184 25.926 0.00 0.00 38.33 2.43
4282 7191 6.024552 AGAATTGAGAACTGAGAGTGAGAC 57.975 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.