Multiple sequence alignment - TraesCS7B01G102300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G102300 chr7B 100.000 3335 0 0 1 3335 116492008 116495342 0.000000e+00 6159.0
1 TraesCS7B01G102300 chr7B 93.651 63 4 0 2 64 615786219 615786281 9.850000e-16 95.3
2 TraesCS7B01G102300 chr7D 92.920 3051 128 30 318 3335 154375814 154378809 0.000000e+00 4357.0
3 TraesCS7B01G102300 chr7D 89.855 69 6 1 1 69 99199762 99199829 1.650000e-13 87.9
4 TraesCS7B01G102300 chr7A 93.063 2191 105 21 822 3001 156267331 156269485 0.000000e+00 3160.0
5 TraesCS7B01G102300 chr7A 81.961 510 47 24 341 812 156266775 156267277 1.120000e-104 390.0
6 TraesCS7B01G102300 chr7A 86.885 183 18 5 137 315 540805346 540805526 2.030000e-47 200.0
7 TraesCS7B01G102300 chr7A 100.000 49 0 0 3065 3113 156269927 156269975 1.270000e-14 91.6
8 TraesCS7B01G102300 chr7A 87.931 58 6 1 140 197 669548746 669548690 2.150000e-07 67.6
9 TraesCS7B01G102300 chr2A 81.250 1024 176 12 1309 2318 33382196 33381175 0.000000e+00 813.0
10 TraesCS7B01G102300 chr2A 80.368 1034 177 18 1309 2323 33343921 33342895 0.000000e+00 761.0
11 TraesCS7B01G102300 chr2A 79.786 1029 182 23 1309 2318 33563888 33562867 0.000000e+00 725.0
12 TraesCS7B01G102300 chr2A 91.176 68 5 1 1 68 722516216 722516282 1.270000e-14 91.6
13 TraesCS7B01G102300 chr2B 81.092 1026 174 16 1309 2318 51706514 51705493 0.000000e+00 802.0
14 TraesCS7B01G102300 chr2B 92.424 66 5 0 1 66 56046629 56046694 9.850000e-16 95.3
15 TraesCS7B01G102300 chr2D 80.642 1028 175 20 1309 2318 31608042 31607021 0.000000e+00 774.0
16 TraesCS7B01G102300 chr2D 80.407 1031 184 13 1309 2324 31729552 31728525 0.000000e+00 769.0
17 TraesCS7B01G102300 chr2D 80.485 1030 173 19 1309 2318 31561165 31560144 0.000000e+00 763.0
18 TraesCS7B01G102300 chr3A 86.111 180 21 3 140 316 748839034 748838856 1.220000e-44 191.0
19 TraesCS7B01G102300 chr1B 82.011 189 22 3 140 316 69274721 69274533 2.070000e-32 150.0
20 TraesCS7B01G102300 chr1B 90.141 71 7 0 1 71 547278733 547278663 3.540000e-15 93.5
21 TraesCS7B01G102300 chr6D 92.308 65 5 0 1 65 245462890 245462826 3.540000e-15 93.5
22 TraesCS7B01G102300 chr5A 92.188 64 5 0 1 64 66096331 66096394 1.270000e-14 91.6
23 TraesCS7B01G102300 chr4B 90.000 70 7 0 1 70 551074308 551074239 1.270000e-14 91.6
24 TraesCS7B01G102300 chr1A 87.342 79 7 3 6 84 569384487 569384412 1.650000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G102300 chr7B 116492008 116495342 3334 False 6159.000000 6159 100.000000 1 3335 1 chr7B.!!$F1 3334
1 TraesCS7B01G102300 chr7D 154375814 154378809 2995 False 4357.000000 4357 92.920000 318 3335 1 chr7D.!!$F2 3017
2 TraesCS7B01G102300 chr7A 156266775 156269975 3200 False 1213.866667 3160 91.674667 341 3113 3 chr7A.!!$F2 2772
3 TraesCS7B01G102300 chr2A 33381175 33382196 1021 True 813.000000 813 81.250000 1309 2318 1 chr2A.!!$R2 1009
4 TraesCS7B01G102300 chr2A 33342895 33343921 1026 True 761.000000 761 80.368000 1309 2323 1 chr2A.!!$R1 1014
5 TraesCS7B01G102300 chr2A 33562867 33563888 1021 True 725.000000 725 79.786000 1309 2318 1 chr2A.!!$R3 1009
6 TraesCS7B01G102300 chr2B 51705493 51706514 1021 True 802.000000 802 81.092000 1309 2318 1 chr2B.!!$R1 1009
7 TraesCS7B01G102300 chr2D 31607021 31608042 1021 True 774.000000 774 80.642000 1309 2318 1 chr2D.!!$R2 1009
8 TraesCS7B01G102300 chr2D 31728525 31729552 1027 True 769.000000 769 80.407000 1309 2324 1 chr2D.!!$R3 1015
9 TraesCS7B01G102300 chr2D 31560144 31561165 1021 True 763.000000 763 80.485000 1309 2318 1 chr2D.!!$R1 1009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.037590 TGATTTTCAGTCGGGGTGGG 59.962 55.0 0.0 0.0 0.00 4.61 F
1078 1174 0.108424 GTGCAAACCAAGCAACACCA 60.108 50.0 0.0 0.0 44.64 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1779 1.117150 GGCCGGAGAGGTACATGTAA 58.883 55.0 5.05 0.0 43.70 2.41 R
2341 2449 0.250727 ATGTGGACAGTCCGGGTTTG 60.251 55.0 15.24 0.0 40.17 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.310769 CTCATCCACCTCATCGTTTATCC 58.689 47.826 0.00 0.00 0.00 2.59
23 24 3.967326 TCATCCACCTCATCGTTTATCCT 59.033 43.478 0.00 0.00 0.00 3.24
24 25 5.144832 TCATCCACCTCATCGTTTATCCTA 58.855 41.667 0.00 0.00 0.00 2.94
25 26 5.780282 TCATCCACCTCATCGTTTATCCTAT 59.220 40.000 0.00 0.00 0.00 2.57
26 27 5.468540 TCCACCTCATCGTTTATCCTATG 57.531 43.478 0.00 0.00 0.00 2.23
27 28 4.899457 TCCACCTCATCGTTTATCCTATGT 59.101 41.667 0.00 0.00 0.00 2.29
28 29 4.991056 CCACCTCATCGTTTATCCTATGTG 59.009 45.833 0.00 0.00 0.00 3.21
29 30 4.991056 CACCTCATCGTTTATCCTATGTGG 59.009 45.833 0.00 0.00 38.40 4.17
30 31 3.997021 CCTCATCGTTTATCCTATGTGGC 59.003 47.826 0.00 0.00 35.26 5.01
31 32 4.503123 CCTCATCGTTTATCCTATGTGGCA 60.503 45.833 0.00 0.00 35.26 4.92
32 33 4.377021 TCATCGTTTATCCTATGTGGCAC 58.623 43.478 11.55 11.55 35.26 5.01
33 34 4.100963 TCATCGTTTATCCTATGTGGCACT 59.899 41.667 19.83 6.99 35.26 4.40
34 35 4.054780 TCGTTTATCCTATGTGGCACTC 57.945 45.455 19.83 0.00 35.26 3.51
35 36 3.131396 CGTTTATCCTATGTGGCACTCC 58.869 50.000 19.83 0.00 35.26 3.85
36 37 3.181465 CGTTTATCCTATGTGGCACTCCT 60.181 47.826 19.83 6.19 35.26 3.69
37 38 4.038763 CGTTTATCCTATGTGGCACTCCTA 59.961 45.833 19.83 7.03 35.26 2.94
38 39 5.452776 CGTTTATCCTATGTGGCACTCCTAA 60.453 44.000 19.83 0.00 35.26 2.69
39 40 5.808366 TTATCCTATGTGGCACTCCTAAG 57.192 43.478 19.83 8.46 35.26 2.18
40 41 3.398318 TCCTATGTGGCACTCCTAAGA 57.602 47.619 19.83 5.46 35.26 2.10
41 42 3.928754 TCCTATGTGGCACTCCTAAGAT 58.071 45.455 19.83 4.39 35.26 2.40
42 43 5.074746 TCCTATGTGGCACTCCTAAGATA 57.925 43.478 19.83 5.37 35.26 1.98
43 44 5.080337 TCCTATGTGGCACTCCTAAGATAG 58.920 45.833 19.83 14.18 35.26 2.08
44 45 3.760580 ATGTGGCACTCCTAAGATAGC 57.239 47.619 19.83 0.00 0.00 2.97
45 46 2.466846 TGTGGCACTCCTAAGATAGCA 58.533 47.619 19.83 0.00 0.00 3.49
46 47 3.041211 TGTGGCACTCCTAAGATAGCAT 58.959 45.455 19.83 0.00 0.00 3.79
47 48 3.455910 TGTGGCACTCCTAAGATAGCATT 59.544 43.478 19.83 0.00 0.00 3.56
48 49 4.653801 TGTGGCACTCCTAAGATAGCATTA 59.346 41.667 19.83 0.00 0.00 1.90
49 50 5.307976 TGTGGCACTCCTAAGATAGCATTAT 59.692 40.000 19.83 0.00 0.00 1.28
50 51 6.183361 TGTGGCACTCCTAAGATAGCATTATT 60.183 38.462 19.83 0.00 0.00 1.40
51 52 6.148480 GTGGCACTCCTAAGATAGCATTATTG 59.852 42.308 11.13 0.00 0.00 1.90
52 53 6.183361 TGGCACTCCTAAGATAGCATTATTGT 60.183 38.462 0.00 0.00 0.00 2.71
53 54 6.148480 GGCACTCCTAAGATAGCATTATTGTG 59.852 42.308 0.00 0.00 0.00 3.33
54 55 6.348050 GCACTCCTAAGATAGCATTATTGTGC 60.348 42.308 0.00 0.00 45.38 4.57
59 60 4.778534 AGATAGCATTATTGTGCATGCC 57.221 40.909 16.68 7.25 45.99 4.40
60 61 3.508793 AGATAGCATTATTGTGCATGCCC 59.491 43.478 16.68 3.59 45.99 5.36
61 62 1.784358 AGCATTATTGTGCATGCCCT 58.216 45.000 16.68 0.00 45.99 5.19
62 63 2.948115 AGCATTATTGTGCATGCCCTA 58.052 42.857 16.68 0.00 45.99 3.53
63 64 3.298619 AGCATTATTGTGCATGCCCTAA 58.701 40.909 16.68 8.02 45.99 2.69
64 65 3.319972 AGCATTATTGTGCATGCCCTAAG 59.680 43.478 16.68 0.00 45.99 2.18
65 66 3.318839 GCATTATTGTGCATGCCCTAAGA 59.681 43.478 16.68 1.99 44.43 2.10
66 67 4.021719 GCATTATTGTGCATGCCCTAAGAT 60.022 41.667 16.68 3.49 44.43 2.40
67 68 5.183713 GCATTATTGTGCATGCCCTAAGATA 59.816 40.000 16.68 2.53 44.43 1.98
68 69 6.294675 GCATTATTGTGCATGCCCTAAGATAA 60.295 38.462 16.68 10.96 44.43 1.75
69 70 6.633500 TTATTGTGCATGCCCTAAGATAAC 57.367 37.500 16.68 3.50 0.00 1.89
70 71 3.643199 TGTGCATGCCCTAAGATAACA 57.357 42.857 16.68 6.41 0.00 2.41
71 72 3.278574 TGTGCATGCCCTAAGATAACAC 58.721 45.455 16.68 2.14 0.00 3.32
72 73 3.278574 GTGCATGCCCTAAGATAACACA 58.721 45.455 16.68 0.00 0.00 3.72
73 74 3.313526 GTGCATGCCCTAAGATAACACAG 59.686 47.826 16.68 0.00 0.00 3.66
74 75 3.054434 TGCATGCCCTAAGATAACACAGT 60.054 43.478 16.68 0.00 0.00 3.55
75 76 3.947834 GCATGCCCTAAGATAACACAGTT 59.052 43.478 6.36 0.00 0.00 3.16
76 77 4.201950 GCATGCCCTAAGATAACACAGTTG 60.202 45.833 6.36 0.00 0.00 3.16
77 78 4.634012 TGCCCTAAGATAACACAGTTGT 57.366 40.909 0.00 0.00 37.67 3.32
78 79 5.748670 TGCCCTAAGATAACACAGTTGTA 57.251 39.130 0.00 0.00 33.55 2.41
79 80 5.484715 TGCCCTAAGATAACACAGTTGTAC 58.515 41.667 0.00 0.00 33.55 2.90
80 81 5.012251 TGCCCTAAGATAACACAGTTGTACA 59.988 40.000 0.00 0.00 33.55 2.90
81 82 6.113411 GCCCTAAGATAACACAGTTGTACAT 58.887 40.000 0.00 0.00 33.55 2.29
82 83 6.037172 GCCCTAAGATAACACAGTTGTACATG 59.963 42.308 0.00 0.00 33.55 3.21
83 84 6.037172 CCCTAAGATAACACAGTTGTACATGC 59.963 42.308 0.00 0.00 33.55 4.06
84 85 5.530519 AAGATAACACAGTTGTACATGCG 57.469 39.130 0.00 0.00 33.55 4.73
85 86 4.566004 AGATAACACAGTTGTACATGCGT 58.434 39.130 0.00 0.00 33.55 5.24
86 87 5.716094 AGATAACACAGTTGTACATGCGTA 58.284 37.500 0.00 0.00 33.55 4.42
87 88 6.160684 AGATAACACAGTTGTACATGCGTAA 58.839 36.000 0.00 0.00 33.55 3.18
88 89 6.816640 AGATAACACAGTTGTACATGCGTAAT 59.183 34.615 0.00 0.00 33.55 1.89
89 90 4.921470 ACACAGTTGTACATGCGTAATC 57.079 40.909 0.00 0.00 32.60 1.75
90 91 3.682858 ACACAGTTGTACATGCGTAATCC 59.317 43.478 0.00 0.00 32.60 3.01
91 92 3.682377 CACAGTTGTACATGCGTAATCCA 59.318 43.478 0.00 0.00 0.00 3.41
92 93 4.332543 CACAGTTGTACATGCGTAATCCAT 59.667 41.667 0.00 0.00 0.00 3.41
93 94 4.570772 ACAGTTGTACATGCGTAATCCATC 59.429 41.667 0.00 0.00 0.00 3.51
94 95 4.570369 CAGTTGTACATGCGTAATCCATCA 59.430 41.667 0.00 0.00 0.00 3.07
95 96 5.064579 CAGTTGTACATGCGTAATCCATCAA 59.935 40.000 0.00 0.00 0.00 2.57
96 97 5.064707 AGTTGTACATGCGTAATCCATCAAC 59.935 40.000 0.00 0.00 30.91 3.18
97 98 3.553917 TGTACATGCGTAATCCATCAACG 59.446 43.478 0.00 0.00 39.55 4.10
98 99 2.627945 ACATGCGTAATCCATCAACGT 58.372 42.857 0.00 0.00 38.81 3.99
99 100 3.006940 ACATGCGTAATCCATCAACGTT 58.993 40.909 0.00 0.00 38.81 3.99
100 101 3.181511 ACATGCGTAATCCATCAACGTTG 60.182 43.478 22.35 22.35 38.81 4.10
101 102 2.689646 TGCGTAATCCATCAACGTTGA 58.310 42.857 31.41 31.41 42.14 3.18
103 104 4.434520 TGCGTAATCCATCAACGTTGATA 58.565 39.130 36.18 25.38 45.62 2.15
104 105 4.269123 TGCGTAATCCATCAACGTTGATAC 59.731 41.667 36.18 28.69 45.62 2.24
105 106 4.318546 GCGTAATCCATCAACGTTGATACC 60.319 45.833 36.18 21.51 45.62 2.73
106 107 4.806775 CGTAATCCATCAACGTTGATACCA 59.193 41.667 36.18 24.70 45.62 3.25
107 108 5.276678 CGTAATCCATCAACGTTGATACCAC 60.277 44.000 36.18 26.56 45.62 4.16
108 109 2.612604 TCCATCAACGTTGATACCACG 58.387 47.619 36.18 25.07 45.62 4.94
109 110 2.231721 TCCATCAACGTTGATACCACGA 59.768 45.455 36.18 24.04 45.62 4.35
110 111 2.603110 CCATCAACGTTGATACCACGAG 59.397 50.000 36.18 23.85 45.62 4.18
111 112 3.250744 CATCAACGTTGATACCACGAGT 58.749 45.455 36.18 15.30 45.62 4.18
112 113 3.374220 TCAACGTTGATACCACGAGTT 57.626 42.857 26.53 0.00 31.01 3.01
113 114 3.054166 TCAACGTTGATACCACGAGTTG 58.946 45.455 26.53 0.00 38.87 3.16
114 115 3.054166 CAACGTTGATACCACGAGTTGA 58.946 45.455 23.90 0.00 39.60 3.18
115 116 3.374220 ACGTTGATACCACGAGTTGAA 57.626 42.857 0.00 0.00 0.00 2.69
116 117 3.314553 ACGTTGATACCACGAGTTGAAG 58.685 45.455 0.00 0.00 0.00 3.02
117 118 2.666508 CGTTGATACCACGAGTTGAAGG 59.333 50.000 0.00 0.00 0.00 3.46
118 119 3.613193 CGTTGATACCACGAGTTGAAGGA 60.613 47.826 0.00 0.00 0.00 3.36
119 120 4.312443 GTTGATACCACGAGTTGAAGGAA 58.688 43.478 0.00 0.00 0.00 3.36
120 121 4.819105 TGATACCACGAGTTGAAGGAAT 57.181 40.909 0.00 0.00 0.00 3.01
121 122 5.160607 TGATACCACGAGTTGAAGGAATT 57.839 39.130 0.00 0.00 0.00 2.17
122 123 4.935205 TGATACCACGAGTTGAAGGAATTG 59.065 41.667 0.00 0.00 0.00 2.32
123 124 3.485463 ACCACGAGTTGAAGGAATTGA 57.515 42.857 0.00 0.00 0.00 2.57
124 125 3.815809 ACCACGAGTTGAAGGAATTGAA 58.184 40.909 0.00 0.00 0.00 2.69
125 126 3.815401 ACCACGAGTTGAAGGAATTGAAG 59.185 43.478 0.00 0.00 0.00 3.02
126 127 3.365364 CCACGAGTTGAAGGAATTGAAGC 60.365 47.826 0.00 0.00 0.00 3.86
127 128 3.250762 CACGAGTTGAAGGAATTGAAGCA 59.749 43.478 0.00 0.00 0.00 3.91
128 129 4.074970 ACGAGTTGAAGGAATTGAAGCAT 58.925 39.130 0.00 0.00 0.00 3.79
129 130 4.083110 ACGAGTTGAAGGAATTGAAGCATG 60.083 41.667 0.00 0.00 0.00 4.06
130 131 4.154737 CGAGTTGAAGGAATTGAAGCATGA 59.845 41.667 0.00 0.00 0.00 3.07
131 132 5.163683 CGAGTTGAAGGAATTGAAGCATGAT 60.164 40.000 0.00 0.00 0.00 2.45
132 133 5.962433 AGTTGAAGGAATTGAAGCATGATG 58.038 37.500 0.00 0.00 0.00 3.07
133 134 4.380841 TGAAGGAATTGAAGCATGATGC 57.619 40.909 9.89 9.89 45.46 3.91
151 152 9.979270 GCATGATGCAGAATAATAATACTACAC 57.021 33.333 13.36 0.00 44.26 2.90
156 157 8.347729 TGCAGAATAATAATACTACACACACG 57.652 34.615 0.00 0.00 0.00 4.49
157 158 7.436970 TGCAGAATAATAATACTACACACACGG 59.563 37.037 0.00 0.00 0.00 4.94
158 159 7.650504 GCAGAATAATAATACTACACACACGGA 59.349 37.037 0.00 0.00 0.00 4.69
159 160 8.965172 CAGAATAATAATACTACACACACGGAC 58.035 37.037 0.00 0.00 0.00 4.79
160 161 7.859377 AGAATAATAATACTACACACACGGACG 59.141 37.037 0.00 0.00 0.00 4.79
161 162 4.970662 ATAATACTACACACACGGACGT 57.029 40.909 0.00 0.00 0.00 4.34
172 173 1.563111 CACGGACGTGTTACAAGTGT 58.437 50.000 16.06 0.00 40.91 3.55
173 174 1.928503 CACGGACGTGTTACAAGTGTT 59.071 47.619 16.06 0.00 40.91 3.32
174 175 2.349275 CACGGACGTGTTACAAGTGTTT 59.651 45.455 16.06 0.00 40.91 2.83
175 176 3.002102 ACGGACGTGTTACAAGTGTTTT 58.998 40.909 8.88 0.00 0.00 2.43
176 177 4.032672 CACGGACGTGTTACAAGTGTTTTA 59.967 41.667 16.06 0.00 40.91 1.52
177 178 4.032786 ACGGACGTGTTACAAGTGTTTTAC 59.967 41.667 8.88 0.00 0.00 2.01
178 179 4.032672 CGGACGTGTTACAAGTGTTTTACA 59.967 41.667 8.88 0.00 0.00 2.41
208 209 9.810870 TCTATACCTAACTAATCTTTCTCCCTC 57.189 37.037 0.00 0.00 0.00 4.30
209 210 7.859026 ATACCTAACTAATCTTTCTCCCTCC 57.141 40.000 0.00 0.00 0.00 4.30
210 211 5.855988 ACCTAACTAATCTTTCTCCCTCCT 58.144 41.667 0.00 0.00 0.00 3.69
211 212 5.663556 ACCTAACTAATCTTTCTCCCTCCTG 59.336 44.000 0.00 0.00 0.00 3.86
212 213 5.900123 CCTAACTAATCTTTCTCCCTCCTGA 59.100 44.000 0.00 0.00 0.00 3.86
213 214 6.556874 CCTAACTAATCTTTCTCCCTCCTGAT 59.443 42.308 0.00 0.00 0.00 2.90
214 215 6.899892 AACTAATCTTTCTCCCTCCTGATT 57.100 37.500 0.00 0.00 0.00 2.57
215 216 6.899892 ACTAATCTTTCTCCCTCCTGATTT 57.100 37.500 0.00 0.00 0.00 2.17
216 217 7.277405 ACTAATCTTTCTCCCTCCTGATTTT 57.723 36.000 0.00 0.00 0.00 1.82
217 218 7.342581 ACTAATCTTTCTCCCTCCTGATTTTC 58.657 38.462 0.00 0.00 0.00 2.29
218 219 5.786121 ATCTTTCTCCCTCCTGATTTTCA 57.214 39.130 0.00 0.00 0.00 2.69
219 220 5.171339 TCTTTCTCCCTCCTGATTTTCAG 57.829 43.478 0.00 0.00 43.91 3.02
220 221 4.599241 TCTTTCTCCCTCCTGATTTTCAGT 59.401 41.667 4.00 0.00 42.80 3.41
221 222 4.559862 TTCTCCCTCCTGATTTTCAGTC 57.440 45.455 4.00 0.00 42.80 3.51
222 223 2.497675 TCTCCCTCCTGATTTTCAGTCG 59.502 50.000 4.00 0.00 42.80 4.18
223 224 1.555075 TCCCTCCTGATTTTCAGTCGG 59.445 52.381 4.00 3.77 42.80 4.79
224 225 1.407437 CCCTCCTGATTTTCAGTCGGG 60.407 57.143 11.59 11.59 42.80 5.14
225 226 1.407437 CCTCCTGATTTTCAGTCGGGG 60.407 57.143 4.00 0.00 42.80 5.73
226 227 1.279271 CTCCTGATTTTCAGTCGGGGT 59.721 52.381 4.00 0.00 42.80 4.95
227 228 1.003118 TCCTGATTTTCAGTCGGGGTG 59.997 52.381 4.00 0.00 42.80 4.61
228 229 1.453155 CTGATTTTCAGTCGGGGTGG 58.547 55.000 0.00 0.00 39.58 4.61
229 230 0.037590 TGATTTTCAGTCGGGGTGGG 59.962 55.000 0.00 0.00 0.00 4.61
230 231 0.679960 GATTTTCAGTCGGGGTGGGG 60.680 60.000 0.00 0.00 0.00 4.96
231 232 2.781431 ATTTTCAGTCGGGGTGGGGC 62.781 60.000 0.00 0.00 0.00 5.80
245 246 3.105785 GGGCCAACACCCCCTAAT 58.894 61.111 4.39 0.00 45.00 1.73
246 247 1.076265 GGGCCAACACCCCCTAATC 60.076 63.158 4.39 0.00 45.00 1.75
247 248 1.580994 GGGCCAACACCCCCTAATCT 61.581 60.000 4.39 0.00 45.00 2.40
248 249 0.335019 GGCCAACACCCCCTAATCTT 59.665 55.000 0.00 0.00 0.00 2.40
249 250 1.685180 GGCCAACACCCCCTAATCTTC 60.685 57.143 0.00 0.00 0.00 2.87
250 251 1.005450 GCCAACACCCCCTAATCTTCA 59.995 52.381 0.00 0.00 0.00 3.02
251 252 2.556559 GCCAACACCCCCTAATCTTCAA 60.557 50.000 0.00 0.00 0.00 2.69
252 253 3.881713 GCCAACACCCCCTAATCTTCAAT 60.882 47.826 0.00 0.00 0.00 2.57
253 254 4.352893 CCAACACCCCCTAATCTTCAATT 58.647 43.478 0.00 0.00 0.00 2.32
254 255 4.402474 CCAACACCCCCTAATCTTCAATTC 59.598 45.833 0.00 0.00 0.00 2.17
255 256 5.264395 CAACACCCCCTAATCTTCAATTCT 58.736 41.667 0.00 0.00 0.00 2.40
256 257 6.423182 CAACACCCCCTAATCTTCAATTCTA 58.577 40.000 0.00 0.00 0.00 2.10
257 258 6.848562 ACACCCCCTAATCTTCAATTCTAT 57.151 37.500 0.00 0.00 0.00 1.98
258 259 7.226059 ACACCCCCTAATCTTCAATTCTATT 57.774 36.000 0.00 0.00 0.00 1.73
259 260 7.062957 ACACCCCCTAATCTTCAATTCTATTG 58.937 38.462 0.00 0.00 0.00 1.90
260 261 6.491403 CACCCCCTAATCTTCAATTCTATTGG 59.509 42.308 0.00 0.00 0.00 3.16
261 262 6.162241 ACCCCCTAATCTTCAATTCTATTGGT 59.838 38.462 0.00 0.00 0.00 3.67
262 263 7.069344 CCCCCTAATCTTCAATTCTATTGGTT 58.931 38.462 0.00 0.00 0.00 3.67
263 264 7.231519 CCCCCTAATCTTCAATTCTATTGGTTC 59.768 40.741 0.00 0.00 0.00 3.62
264 265 7.779798 CCCCTAATCTTCAATTCTATTGGTTCA 59.220 37.037 0.00 0.00 0.00 3.18
265 266 8.844244 CCCTAATCTTCAATTCTATTGGTTCAG 58.156 37.037 0.00 0.00 0.00 3.02
266 267 9.401058 CCTAATCTTCAATTCTATTGGTTCAGT 57.599 33.333 0.00 0.00 0.00 3.41
271 272 9.793259 TCTTCAATTCTATTGGTTCAGTTTAGT 57.207 29.630 0.00 0.00 0.00 2.24
275 276 9.774742 CAATTCTATTGGTTCAGTTTAGTTAGC 57.225 33.333 0.00 0.00 0.00 3.09
276 277 7.916914 TTCTATTGGTTCAGTTTAGTTAGCC 57.083 36.000 0.00 0.00 0.00 3.93
277 278 6.103997 TCTATTGGTTCAGTTTAGTTAGCCG 58.896 40.000 0.00 0.00 0.00 5.52
278 279 3.048337 TGGTTCAGTTTAGTTAGCCGG 57.952 47.619 0.00 0.00 0.00 6.13
279 280 2.369532 TGGTTCAGTTTAGTTAGCCGGT 59.630 45.455 1.90 0.00 0.00 5.28
280 281 3.577848 TGGTTCAGTTTAGTTAGCCGGTA 59.422 43.478 1.90 0.00 0.00 4.02
281 282 4.040217 TGGTTCAGTTTAGTTAGCCGGTAA 59.960 41.667 1.90 0.00 0.00 2.85
282 283 4.996758 GGTTCAGTTTAGTTAGCCGGTAAA 59.003 41.667 1.90 0.00 0.00 2.01
283 284 5.469760 GGTTCAGTTTAGTTAGCCGGTAAAA 59.530 40.000 1.90 0.00 0.00 1.52
284 285 6.149973 GGTTCAGTTTAGTTAGCCGGTAAAAT 59.850 38.462 1.90 0.00 0.00 1.82
285 286 6.973229 TCAGTTTAGTTAGCCGGTAAAATC 57.027 37.500 1.90 0.00 0.00 2.17
286 287 6.465948 TCAGTTTAGTTAGCCGGTAAAATCA 58.534 36.000 1.90 0.00 0.00 2.57
287 288 6.935771 TCAGTTTAGTTAGCCGGTAAAATCAA 59.064 34.615 1.90 0.00 0.00 2.57
288 289 7.444792 TCAGTTTAGTTAGCCGGTAAAATCAAA 59.555 33.333 1.90 0.00 0.00 2.69
289 290 7.749126 CAGTTTAGTTAGCCGGTAAAATCAAAG 59.251 37.037 1.90 0.00 0.00 2.77
290 291 7.446319 AGTTTAGTTAGCCGGTAAAATCAAAGT 59.554 33.333 1.90 0.00 0.00 2.66
291 292 8.720562 GTTTAGTTAGCCGGTAAAATCAAAGTA 58.279 33.333 1.90 0.00 0.00 2.24
292 293 8.845413 TTAGTTAGCCGGTAAAATCAAAGTAA 57.155 30.769 1.90 0.00 0.00 2.24
293 294 7.748691 AGTTAGCCGGTAAAATCAAAGTAAA 57.251 32.000 1.90 0.00 0.00 2.01
294 295 7.587629 AGTTAGCCGGTAAAATCAAAGTAAAC 58.412 34.615 1.90 0.00 0.00 2.01
295 296 5.381174 AGCCGGTAAAATCAAAGTAAACC 57.619 39.130 1.90 0.00 0.00 3.27
296 297 5.074804 AGCCGGTAAAATCAAAGTAAACCT 58.925 37.500 1.90 0.00 0.00 3.50
297 298 5.537295 AGCCGGTAAAATCAAAGTAAACCTT 59.463 36.000 1.90 0.00 33.79 3.50
298 299 5.860182 GCCGGTAAAATCAAAGTAAACCTTC 59.140 40.000 1.90 0.00 31.27 3.46
299 300 6.081693 CCGGTAAAATCAAAGTAAACCTTCG 58.918 40.000 0.00 0.00 31.27 3.79
300 301 6.293571 CCGGTAAAATCAAAGTAAACCTTCGT 60.294 38.462 0.00 0.00 31.27 3.85
301 302 6.575942 CGGTAAAATCAAAGTAAACCTTCGTG 59.424 38.462 0.00 0.00 31.27 4.35
302 303 6.361481 GGTAAAATCAAAGTAAACCTTCGTGC 59.639 38.462 0.00 0.00 31.27 5.34
303 304 3.806316 ATCAAAGTAAACCTTCGTGCG 57.194 42.857 0.00 0.00 31.27 5.34
304 305 2.553086 TCAAAGTAAACCTTCGTGCGT 58.447 42.857 0.00 0.00 31.27 5.24
305 306 2.540931 TCAAAGTAAACCTTCGTGCGTC 59.459 45.455 0.00 0.00 31.27 5.19
306 307 2.521105 AAGTAAACCTTCGTGCGTCT 57.479 45.000 0.00 0.00 0.00 4.18
307 308 3.648339 AAGTAAACCTTCGTGCGTCTA 57.352 42.857 0.00 0.00 0.00 2.59
308 309 3.213249 AGTAAACCTTCGTGCGTCTAG 57.787 47.619 0.00 0.00 0.00 2.43
309 310 2.555757 AGTAAACCTTCGTGCGTCTAGT 59.444 45.455 0.00 0.00 0.00 2.57
310 311 3.753272 AGTAAACCTTCGTGCGTCTAGTA 59.247 43.478 0.00 0.00 0.00 1.82
311 312 3.863142 AAACCTTCGTGCGTCTAGTAT 57.137 42.857 0.00 0.00 0.00 2.12
312 313 3.863142 AACCTTCGTGCGTCTAGTATT 57.137 42.857 0.00 0.00 0.00 1.89
313 314 3.146618 ACCTTCGTGCGTCTAGTATTG 57.853 47.619 0.00 0.00 0.00 1.90
314 315 1.852895 CCTTCGTGCGTCTAGTATTGC 59.147 52.381 0.00 0.00 0.00 3.56
315 316 2.479730 CCTTCGTGCGTCTAGTATTGCT 60.480 50.000 0.00 0.00 0.00 3.91
316 317 2.188837 TCGTGCGTCTAGTATTGCTG 57.811 50.000 0.00 0.00 0.00 4.41
324 325 6.200286 GTGCGTCTAGTATTGCTGCTAATAAA 59.800 38.462 0.00 0.00 0.00 1.40
353 354 3.812053 ACTGCTCATCTTGAAAGACACAC 59.188 43.478 0.00 0.00 37.98 3.82
355 356 3.811497 TGCTCATCTTGAAAGACACACTG 59.189 43.478 0.00 0.00 37.98 3.66
356 357 3.812053 GCTCATCTTGAAAGACACACTGT 59.188 43.478 0.00 0.00 37.98 3.55
384 386 6.980051 AAACGAAAACTAGTTTGTCTCAGT 57.020 33.333 21.22 13.46 38.90 3.41
391 393 5.455056 ACTAGTTTGTCTCAGTTGACGAT 57.545 39.130 0.00 0.00 39.64 3.73
429 431 5.007385 TCTTATAACGCTTGGAGGAGAAC 57.993 43.478 0.00 0.00 0.00 3.01
442 444 4.236147 GGAGGAGAACAAAAGAGACGTAC 58.764 47.826 0.00 0.00 0.00 3.67
447 449 4.785417 AGAACAAAAGAGACGTACGAGAG 58.215 43.478 24.41 5.11 0.00 3.20
494 500 1.540363 CGTGGCAAACCTGTGTCTACT 60.540 52.381 0.00 0.00 36.63 2.57
577 594 2.093783 GCTGTGGAAGTAACACGTATGC 59.906 50.000 0.00 0.00 41.64 3.14
646 679 1.406341 GCAAAATGCCTGCCATGTGAT 60.406 47.619 0.00 0.00 37.42 3.06
679 716 1.685302 CATGCAAAGTTACCACGCAC 58.315 50.000 0.00 0.00 35.02 5.34
742 786 8.523523 TTCAAAATGTTTAATGTGCATCTGAG 57.476 30.769 0.00 0.00 0.00 3.35
777 821 8.503196 TCATCATCCATTAATGTACGTTAATGC 58.497 33.333 35.12 0.00 44.74 3.56
778 822 7.793927 TCATCCATTAATGTACGTTAATGCA 57.206 32.000 35.12 28.79 44.74 3.96
779 823 7.635423 TCATCCATTAATGTACGTTAATGCAC 58.365 34.615 35.12 0.00 44.74 4.57
835 923 6.760161 AACGTGTACTAAAAAGAGTAGTGC 57.240 37.500 0.00 0.00 35.47 4.40
884 973 9.851686 AGTACAATGATATCTTCCTAATTTGCA 57.148 29.630 3.98 0.00 0.00 4.08
956 1048 0.820482 TACATACGCGAGGCTGCCTA 60.820 55.000 23.44 5.76 31.76 3.93
970 1062 3.549794 GCTGCCTACTTCCATTTGATCT 58.450 45.455 0.00 0.00 0.00 2.75
978 1070 6.261826 CCTACTTCCATTTGATCTGGTTCATC 59.738 42.308 0.00 0.00 35.19 2.92
979 1071 4.952335 ACTTCCATTTGATCTGGTTCATCC 59.048 41.667 0.00 0.00 35.19 3.51
1078 1174 0.108424 GTGCAAACCAAGCAACACCA 60.108 50.000 0.00 0.00 44.64 4.17
1218 1314 8.344831 TGCATGCATGATACAGTAATTAAACTC 58.655 33.333 30.64 6.12 0.00 3.01
2103 2199 3.797353 CAGCAGGCCGGGGTGTAT 61.797 66.667 18.05 0.00 0.00 2.29
2170 2266 2.043852 GGGTGGAGGAGCTCTCGA 60.044 66.667 14.64 3.84 43.34 4.04
2341 2449 3.492313 GTCGTGCTCCATTGATTCAAAC 58.508 45.455 2.68 0.00 0.00 2.93
2460 2576 3.858238 GTCTTCTTGCGTAGGACATGTAC 59.142 47.826 0.00 0.00 0.00 2.90
2545 2661 6.880484 TCTGTTCTCGGCTATTATTTTACCA 58.120 36.000 0.00 0.00 0.00 3.25
2549 2665 8.205512 TGTTCTCGGCTATTATTTTACCACATA 58.794 33.333 0.00 0.00 0.00 2.29
2688 2810 4.647291 AACGAAACGATTCTCACATGAC 57.353 40.909 0.00 0.00 33.17 3.06
2698 2820 4.690184 TTCTCACATGACAATGATGTGC 57.310 40.909 9.42 0.00 46.91 4.57
2713 2835 3.640498 TGATGTGCCCAGAACATTTTTCA 59.360 39.130 0.00 0.00 38.37 2.69
2715 2837 3.791245 TGTGCCCAGAACATTTTTCAAC 58.209 40.909 0.00 0.00 0.00 3.18
2797 2919 4.963276 TGCTACACCTATGCATCAAAAC 57.037 40.909 0.19 0.00 0.00 2.43
2876 2998 9.190858 TGTGAAAATAAATGTTTACATCAGTGC 57.809 29.630 0.00 0.00 35.10 4.40
3006 3160 9.322773 GTACAAAAAGAAAGTGTTACTAGGACT 57.677 33.333 0.00 0.00 0.00 3.85
3136 3647 8.765219 CCCATGTTCTATTTTGTATTCTACTCG 58.235 37.037 0.00 0.00 0.00 4.18
3160 3672 8.747666 TCGTGTGTTTTTCAGTAATAAATTTGC 58.252 29.630 0.00 0.00 0.00 3.68
3164 3676 8.921670 GTGTTTTTCAGTAATAAATTTGCCGAT 58.078 29.630 0.00 0.00 0.00 4.18
3215 3734 4.929211 AGTTGCTTTCAAGTTTGTTTGTCC 59.071 37.500 0.00 0.00 32.12 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.039730 AGGATAAACGATGAGGTGGATGAG 59.960 45.833 0.00 0.00 0.00 2.90
1 2 3.967326 AGGATAAACGATGAGGTGGATGA 59.033 43.478 0.00 0.00 0.00 2.92
2 3 4.342862 AGGATAAACGATGAGGTGGATG 57.657 45.455 0.00 0.00 0.00 3.51
3 4 5.544176 ACATAGGATAAACGATGAGGTGGAT 59.456 40.000 0.00 0.00 0.00 3.41
4 5 4.899457 ACATAGGATAAACGATGAGGTGGA 59.101 41.667 0.00 0.00 0.00 4.02
5 6 4.991056 CACATAGGATAAACGATGAGGTGG 59.009 45.833 0.00 0.00 0.00 4.61
6 7 4.991056 CCACATAGGATAAACGATGAGGTG 59.009 45.833 0.00 0.00 41.22 4.00
7 8 4.503296 GCCACATAGGATAAACGATGAGGT 60.503 45.833 0.00 0.00 41.22 3.85
8 9 3.997021 GCCACATAGGATAAACGATGAGG 59.003 47.826 0.00 0.00 41.22 3.86
9 10 4.449068 GTGCCACATAGGATAAACGATGAG 59.551 45.833 0.00 0.00 41.22 2.90
10 11 4.100963 AGTGCCACATAGGATAAACGATGA 59.899 41.667 0.00 0.00 41.22 2.92
11 12 4.380531 AGTGCCACATAGGATAAACGATG 58.619 43.478 0.00 0.00 41.22 3.84
12 13 4.503296 GGAGTGCCACATAGGATAAACGAT 60.503 45.833 0.00 0.00 41.22 3.73
13 14 3.181469 GGAGTGCCACATAGGATAAACGA 60.181 47.826 0.00 0.00 41.22 3.85
14 15 3.131396 GGAGTGCCACATAGGATAAACG 58.869 50.000 0.00 0.00 41.22 3.60
15 16 4.423625 AGGAGTGCCACATAGGATAAAC 57.576 45.455 0.00 0.00 41.22 2.01
16 17 5.903010 TCTTAGGAGTGCCACATAGGATAAA 59.097 40.000 0.00 0.00 41.22 1.40
17 18 5.464069 TCTTAGGAGTGCCACATAGGATAA 58.536 41.667 0.00 0.00 41.22 1.75
18 19 5.074746 TCTTAGGAGTGCCACATAGGATA 57.925 43.478 0.00 0.00 41.22 2.59
19 20 3.928754 TCTTAGGAGTGCCACATAGGAT 58.071 45.455 0.00 0.00 41.22 3.24
20 21 3.398318 TCTTAGGAGTGCCACATAGGA 57.602 47.619 0.00 0.00 41.22 2.94
21 22 4.322349 GCTATCTTAGGAGTGCCACATAGG 60.322 50.000 0.00 0.00 41.84 2.57
22 23 4.281941 TGCTATCTTAGGAGTGCCACATAG 59.718 45.833 0.00 0.00 36.29 2.23
23 24 4.223144 TGCTATCTTAGGAGTGCCACATA 58.777 43.478 0.00 0.00 36.29 2.29
24 25 3.041211 TGCTATCTTAGGAGTGCCACAT 58.959 45.455 0.00 0.00 36.29 3.21
25 26 2.466846 TGCTATCTTAGGAGTGCCACA 58.533 47.619 0.00 0.00 36.29 4.17
26 27 3.760580 ATGCTATCTTAGGAGTGCCAC 57.239 47.619 0.00 0.00 36.29 5.01
27 28 6.183361 ACAATAATGCTATCTTAGGAGTGCCA 60.183 38.462 0.00 0.00 36.29 4.92
28 29 6.148480 CACAATAATGCTATCTTAGGAGTGCC 59.852 42.308 0.70 0.00 0.00 5.01
29 30 6.348050 GCACAATAATGCTATCTTAGGAGTGC 60.348 42.308 0.00 0.00 42.62 4.40
30 31 6.707608 TGCACAATAATGCTATCTTAGGAGTG 59.292 38.462 0.00 0.00 46.28 3.51
31 32 6.830912 TGCACAATAATGCTATCTTAGGAGT 58.169 36.000 0.00 0.00 46.28 3.85
32 33 7.625817 GCATGCACAATAATGCTATCTTAGGAG 60.626 40.741 14.21 0.00 46.28 3.69
33 34 6.149973 GCATGCACAATAATGCTATCTTAGGA 59.850 38.462 14.21 0.00 46.28 2.94
34 35 6.320171 GCATGCACAATAATGCTATCTTAGG 58.680 40.000 14.21 0.00 46.28 2.69
35 36 6.320171 GGCATGCACAATAATGCTATCTTAG 58.680 40.000 21.36 0.00 46.72 2.18
36 37 5.183713 GGGCATGCACAATAATGCTATCTTA 59.816 40.000 21.36 0.00 46.72 2.10
37 38 4.021719 GGGCATGCACAATAATGCTATCTT 60.022 41.667 21.36 0.00 46.72 2.40
38 39 3.508793 GGGCATGCACAATAATGCTATCT 59.491 43.478 21.36 0.00 46.72 1.98
39 40 3.508793 AGGGCATGCACAATAATGCTATC 59.491 43.478 24.51 0.00 46.72 2.08
40 41 3.503365 AGGGCATGCACAATAATGCTAT 58.497 40.909 24.51 0.00 46.72 2.97
41 42 2.948115 AGGGCATGCACAATAATGCTA 58.052 42.857 24.51 0.00 46.72 3.49
42 43 1.784358 AGGGCATGCACAATAATGCT 58.216 45.000 24.51 0.00 46.72 3.79
43 44 3.318839 TCTTAGGGCATGCACAATAATGC 59.681 43.478 24.51 0.00 46.80 3.56
44 45 5.717078 ATCTTAGGGCATGCACAATAATG 57.283 39.130 24.51 6.91 0.00 1.90
45 46 6.777091 TGTTATCTTAGGGCATGCACAATAAT 59.223 34.615 24.51 12.48 0.00 1.28
46 47 6.039270 GTGTTATCTTAGGGCATGCACAATAA 59.961 38.462 24.51 16.12 0.00 1.40
47 48 5.530915 GTGTTATCTTAGGGCATGCACAATA 59.469 40.000 24.51 11.10 0.00 1.90
48 49 4.339247 GTGTTATCTTAGGGCATGCACAAT 59.661 41.667 24.51 12.12 0.00 2.71
49 50 3.694072 GTGTTATCTTAGGGCATGCACAA 59.306 43.478 24.51 13.26 0.00 3.33
50 51 3.278574 GTGTTATCTTAGGGCATGCACA 58.721 45.455 24.51 10.21 0.00 4.57
51 52 3.278574 TGTGTTATCTTAGGGCATGCAC 58.721 45.455 21.36 17.78 0.00 4.57
52 53 3.054434 ACTGTGTTATCTTAGGGCATGCA 60.054 43.478 21.36 0.00 0.00 3.96
53 54 3.545703 ACTGTGTTATCTTAGGGCATGC 58.454 45.455 9.90 9.90 0.00 4.06
54 55 4.943705 ACAACTGTGTTATCTTAGGGCATG 59.056 41.667 0.00 0.00 32.58 4.06
55 56 5.179452 ACAACTGTGTTATCTTAGGGCAT 57.821 39.130 0.00 0.00 32.58 4.40
56 57 4.634012 ACAACTGTGTTATCTTAGGGCA 57.366 40.909 0.00 0.00 32.58 5.36
57 58 5.484715 TGTACAACTGTGTTATCTTAGGGC 58.515 41.667 0.00 0.00 39.30 5.19
58 59 6.037172 GCATGTACAACTGTGTTATCTTAGGG 59.963 42.308 0.00 0.00 39.30 3.53
59 60 6.237835 CGCATGTACAACTGTGTTATCTTAGG 60.238 42.308 0.00 0.00 39.30 2.69
60 61 6.310467 ACGCATGTACAACTGTGTTATCTTAG 59.690 38.462 9.36 0.00 39.30 2.18
61 62 6.160684 ACGCATGTACAACTGTGTTATCTTA 58.839 36.000 9.36 0.00 39.30 2.10
62 63 4.994852 ACGCATGTACAACTGTGTTATCTT 59.005 37.500 9.36 0.00 39.30 2.40
63 64 4.566004 ACGCATGTACAACTGTGTTATCT 58.434 39.130 9.36 0.00 39.30 1.98
64 65 4.921470 ACGCATGTACAACTGTGTTATC 57.079 40.909 9.36 0.00 39.30 1.75
65 66 6.036735 GGATTACGCATGTACAACTGTGTTAT 59.963 38.462 18.04 14.94 39.30 1.89
66 67 5.349270 GGATTACGCATGTACAACTGTGTTA 59.651 40.000 18.04 11.39 39.30 2.41
67 68 4.153475 GGATTACGCATGTACAACTGTGTT 59.847 41.667 18.04 4.46 39.30 3.32
68 69 3.682858 GGATTACGCATGTACAACTGTGT 59.317 43.478 17.23 17.23 42.09 3.72
69 70 3.682377 TGGATTACGCATGTACAACTGTG 59.318 43.478 0.00 3.87 0.00 3.66
70 71 3.932822 TGGATTACGCATGTACAACTGT 58.067 40.909 0.00 0.82 0.00 3.55
71 72 4.570369 TGATGGATTACGCATGTACAACTG 59.430 41.667 0.00 0.00 0.00 3.16
72 73 4.765273 TGATGGATTACGCATGTACAACT 58.235 39.130 0.00 0.00 0.00 3.16
73 74 5.263185 GTTGATGGATTACGCATGTACAAC 58.737 41.667 0.00 0.00 0.00 3.32
74 75 4.033472 CGTTGATGGATTACGCATGTACAA 59.967 41.667 0.00 0.00 0.00 2.41
75 76 3.553917 CGTTGATGGATTACGCATGTACA 59.446 43.478 0.00 0.00 0.00 2.90
76 77 3.554324 ACGTTGATGGATTACGCATGTAC 59.446 43.478 0.00 0.00 38.77 2.90
77 78 3.787785 ACGTTGATGGATTACGCATGTA 58.212 40.909 0.00 0.00 38.77 2.29
78 79 2.627945 ACGTTGATGGATTACGCATGT 58.372 42.857 0.00 0.00 38.77 3.21
79 80 3.063316 TCAACGTTGATGGATTACGCATG 59.937 43.478 26.53 0.00 38.77 4.06
80 81 3.266636 TCAACGTTGATGGATTACGCAT 58.733 40.909 26.53 0.00 38.77 4.73
81 82 2.689646 TCAACGTTGATGGATTACGCA 58.310 42.857 26.53 0.05 38.77 5.24
82 83 3.944422 ATCAACGTTGATGGATTACGC 57.056 42.857 36.26 0.00 45.63 4.42
83 84 4.806775 TGGTATCAACGTTGATGGATTACG 59.193 41.667 40.58 10.82 46.68 3.18
84 85 5.276678 CGTGGTATCAACGTTGATGGATTAC 60.277 44.000 40.58 31.77 46.68 1.89
85 86 4.806775 CGTGGTATCAACGTTGATGGATTA 59.193 41.667 40.58 25.05 46.68 1.75
86 87 3.621268 CGTGGTATCAACGTTGATGGATT 59.379 43.478 40.58 25.11 46.68 3.01
87 88 3.118920 TCGTGGTATCAACGTTGATGGAT 60.119 43.478 40.58 25.43 46.68 3.41
88 89 2.231721 TCGTGGTATCAACGTTGATGGA 59.768 45.455 40.58 28.29 46.68 3.41
89 90 2.603110 CTCGTGGTATCAACGTTGATGG 59.397 50.000 40.58 26.99 46.68 3.51
90 91 3.250744 ACTCGTGGTATCAACGTTGATG 58.749 45.455 40.58 28.20 46.68 3.07
92 93 3.054166 CAACTCGTGGTATCAACGTTGA 58.946 45.455 31.41 31.41 42.14 3.18
93 94 3.054166 TCAACTCGTGGTATCAACGTTG 58.946 45.455 22.35 22.35 32.61 4.10
94 95 3.374220 TCAACTCGTGGTATCAACGTT 57.626 42.857 0.00 0.00 0.00 3.99
95 96 3.314553 CTTCAACTCGTGGTATCAACGT 58.685 45.455 0.00 0.00 0.00 3.99
96 97 2.666508 CCTTCAACTCGTGGTATCAACG 59.333 50.000 0.00 0.00 0.00 4.10
97 98 3.921677 TCCTTCAACTCGTGGTATCAAC 58.078 45.455 0.00 0.00 0.00 3.18
98 99 4.610605 TTCCTTCAACTCGTGGTATCAA 57.389 40.909 0.00 0.00 0.00 2.57
99 100 4.819105 ATTCCTTCAACTCGTGGTATCA 57.181 40.909 0.00 0.00 0.00 2.15
100 101 5.175859 TCAATTCCTTCAACTCGTGGTATC 58.824 41.667 0.00 0.00 0.00 2.24
101 102 5.160607 TCAATTCCTTCAACTCGTGGTAT 57.839 39.130 0.00 0.00 0.00 2.73
102 103 4.610605 TCAATTCCTTCAACTCGTGGTA 57.389 40.909 0.00 0.00 0.00 3.25
103 104 3.485463 TCAATTCCTTCAACTCGTGGT 57.515 42.857 0.00 0.00 0.00 4.16
104 105 3.365364 GCTTCAATTCCTTCAACTCGTGG 60.365 47.826 0.00 0.00 0.00 4.94
105 106 3.250762 TGCTTCAATTCCTTCAACTCGTG 59.749 43.478 0.00 0.00 0.00 4.35
106 107 3.476552 TGCTTCAATTCCTTCAACTCGT 58.523 40.909 0.00 0.00 0.00 4.18
107 108 4.154737 TCATGCTTCAATTCCTTCAACTCG 59.845 41.667 0.00 0.00 0.00 4.18
108 109 5.633830 TCATGCTTCAATTCCTTCAACTC 57.366 39.130 0.00 0.00 0.00 3.01
109 110 5.623824 GCATCATGCTTCAATTCCTTCAACT 60.624 40.000 1.02 0.00 40.96 3.16
110 111 4.565564 GCATCATGCTTCAATTCCTTCAAC 59.434 41.667 1.02 0.00 40.96 3.18
111 112 4.221041 TGCATCATGCTTCAATTCCTTCAA 59.779 37.500 11.84 0.00 45.31 2.69
112 113 3.764972 TGCATCATGCTTCAATTCCTTCA 59.235 39.130 11.84 0.00 45.31 3.02
113 114 4.097437 TCTGCATCATGCTTCAATTCCTTC 59.903 41.667 11.84 0.00 45.31 3.46
114 115 4.021229 TCTGCATCATGCTTCAATTCCTT 58.979 39.130 11.84 0.00 45.31 3.36
115 116 3.628008 TCTGCATCATGCTTCAATTCCT 58.372 40.909 11.84 0.00 45.31 3.36
116 117 4.380841 TTCTGCATCATGCTTCAATTCC 57.619 40.909 11.84 0.00 45.31 3.01
117 118 9.687210 TTATTATTCTGCATCATGCTTCAATTC 57.313 29.630 11.84 0.00 45.31 2.17
121 122 9.511272 AGTATTATTATTCTGCATCATGCTTCA 57.489 29.630 11.84 0.00 45.31 3.02
124 125 9.948964 TGTAGTATTATTATTCTGCATCATGCT 57.051 29.630 11.84 0.00 45.31 3.79
125 126 9.979270 GTGTAGTATTATTATTCTGCATCATGC 57.021 33.333 1.35 1.35 45.29 4.06
130 131 8.978539 CGTGTGTGTAGTATTATTATTCTGCAT 58.021 33.333 0.00 0.00 29.46 3.96
131 132 7.436970 CCGTGTGTGTAGTATTATTATTCTGCA 59.563 37.037 0.00 0.00 0.00 4.41
132 133 7.650504 TCCGTGTGTGTAGTATTATTATTCTGC 59.349 37.037 0.00 0.00 0.00 4.26
133 134 8.965172 GTCCGTGTGTGTAGTATTATTATTCTG 58.035 37.037 0.00 0.00 0.00 3.02
134 135 7.859377 CGTCCGTGTGTGTAGTATTATTATTCT 59.141 37.037 0.00 0.00 0.00 2.40
135 136 7.645340 ACGTCCGTGTGTGTAGTATTATTATTC 59.355 37.037 0.00 0.00 0.00 1.75
136 137 7.433131 CACGTCCGTGTGTGTAGTATTATTATT 59.567 37.037 11.49 0.00 40.91 1.40
137 138 6.914215 CACGTCCGTGTGTGTAGTATTATTAT 59.086 38.462 11.49 0.00 40.91 1.28
138 139 6.257423 CACGTCCGTGTGTGTAGTATTATTA 58.743 40.000 11.49 0.00 40.91 0.98
139 140 5.097529 CACGTCCGTGTGTGTAGTATTATT 58.902 41.667 11.49 0.00 40.91 1.40
140 141 4.665212 CACGTCCGTGTGTGTAGTATTAT 58.335 43.478 11.49 0.00 40.91 1.28
141 142 4.082274 CACGTCCGTGTGTGTAGTATTA 57.918 45.455 11.49 0.00 40.91 0.98
142 143 2.937591 CACGTCCGTGTGTGTAGTATT 58.062 47.619 11.49 0.00 40.91 1.89
143 144 2.624316 CACGTCCGTGTGTGTAGTAT 57.376 50.000 11.49 0.00 40.91 2.12
154 155 2.298411 AACACTTGTAACACGTCCGT 57.702 45.000 0.00 0.00 0.00 4.69
155 156 3.661758 AAAACACTTGTAACACGTCCG 57.338 42.857 0.00 0.00 0.00 4.79
156 157 5.257864 GTGTAAAACACTTGTAACACGTCC 58.742 41.667 2.97 0.00 45.27 4.79
157 158 4.951454 CGTGTAAAACACTTGTAACACGTC 59.049 41.667 23.38 4.11 46.46 4.34
158 159 4.624882 TCGTGTAAAACACTTGTAACACGT 59.375 37.500 26.82 0.00 46.46 4.49
159 160 5.128636 TCGTGTAAAACACTTGTAACACG 57.871 39.130 24.58 24.58 46.46 4.49
160 161 6.940714 AGATCGTGTAAAACACTTGTAACAC 58.059 36.000 8.42 10.40 46.46 3.32
161 162 8.821147 ATAGATCGTGTAAAACACTTGTAACA 57.179 30.769 8.42 0.00 46.46 2.41
163 164 9.357652 GGTATAGATCGTGTAAAACACTTGTAA 57.642 33.333 8.42 0.00 46.46 2.41
164 165 8.742777 AGGTATAGATCGTGTAAAACACTTGTA 58.257 33.333 8.42 0.47 46.46 2.41
165 166 7.609056 AGGTATAGATCGTGTAAAACACTTGT 58.391 34.615 8.42 0.00 46.46 3.16
166 167 9.577110 TTAGGTATAGATCGTGTAAAACACTTG 57.423 33.333 8.42 0.00 46.46 3.16
167 168 9.578439 GTTAGGTATAGATCGTGTAAAACACTT 57.422 33.333 8.42 0.00 46.46 3.16
168 169 8.964772 AGTTAGGTATAGATCGTGTAAAACACT 58.035 33.333 8.42 0.00 46.46 3.55
182 183 9.810870 GAGGGAGAAAGATTAGTTAGGTATAGA 57.189 37.037 0.00 0.00 0.00 1.98
183 184 9.027202 GGAGGGAGAAAGATTAGTTAGGTATAG 57.973 40.741 0.00 0.00 0.00 1.31
184 185 8.744365 AGGAGGGAGAAAGATTAGTTAGGTATA 58.256 37.037 0.00 0.00 0.00 1.47
185 186 7.511028 CAGGAGGGAGAAAGATTAGTTAGGTAT 59.489 40.741 0.00 0.00 0.00 2.73
186 187 6.839657 CAGGAGGGAGAAAGATTAGTTAGGTA 59.160 42.308 0.00 0.00 0.00 3.08
187 188 5.663556 CAGGAGGGAGAAAGATTAGTTAGGT 59.336 44.000 0.00 0.00 0.00 3.08
188 189 5.900123 TCAGGAGGGAGAAAGATTAGTTAGG 59.100 44.000 0.00 0.00 0.00 2.69
189 190 7.610580 ATCAGGAGGGAGAAAGATTAGTTAG 57.389 40.000 0.00 0.00 0.00 2.34
190 191 7.996758 AATCAGGAGGGAGAAAGATTAGTTA 57.003 36.000 0.00 0.00 0.00 2.24
191 192 6.899892 AATCAGGAGGGAGAAAGATTAGTT 57.100 37.500 0.00 0.00 0.00 2.24
192 193 6.899892 AAATCAGGAGGGAGAAAGATTAGT 57.100 37.500 0.00 0.00 0.00 2.24
193 194 7.341805 TGAAAATCAGGAGGGAGAAAGATTAG 58.658 38.462 0.00 0.00 0.00 1.73
194 195 7.270832 TGAAAATCAGGAGGGAGAAAGATTA 57.729 36.000 0.00 0.00 0.00 1.75
195 196 6.144845 TGAAAATCAGGAGGGAGAAAGATT 57.855 37.500 0.00 0.00 0.00 2.40
196 197 5.753716 CTGAAAATCAGGAGGGAGAAAGAT 58.246 41.667 0.00 0.00 40.71 2.40
197 198 5.171339 CTGAAAATCAGGAGGGAGAAAGA 57.829 43.478 0.00 0.00 40.71 2.52
210 211 0.037590 CCCACCCCGACTGAAAATCA 59.962 55.000 0.00 0.00 0.00 2.57
211 212 0.679960 CCCCACCCCGACTGAAAATC 60.680 60.000 0.00 0.00 0.00 2.17
212 213 1.382629 CCCCACCCCGACTGAAAAT 59.617 57.895 0.00 0.00 0.00 1.82
213 214 2.840576 CCCCACCCCGACTGAAAA 59.159 61.111 0.00 0.00 0.00 2.29
214 215 3.961414 GCCCCACCCCGACTGAAA 61.961 66.667 0.00 0.00 0.00 2.69
229 230 0.335019 AAGATTAGGGGGTGTTGGCC 59.665 55.000 0.00 0.00 0.00 5.36
230 231 1.005450 TGAAGATTAGGGGGTGTTGGC 59.995 52.381 0.00 0.00 0.00 4.52
231 232 3.449746 TTGAAGATTAGGGGGTGTTGG 57.550 47.619 0.00 0.00 0.00 3.77
232 233 5.264395 AGAATTGAAGATTAGGGGGTGTTG 58.736 41.667 0.00 0.00 0.00 3.33
233 234 5.536497 AGAATTGAAGATTAGGGGGTGTT 57.464 39.130 0.00 0.00 0.00 3.32
234 235 6.848562 ATAGAATTGAAGATTAGGGGGTGT 57.151 37.500 0.00 0.00 0.00 4.16
235 236 6.491403 CCAATAGAATTGAAGATTAGGGGGTG 59.509 42.308 1.23 0.00 0.00 4.61
236 237 6.162241 ACCAATAGAATTGAAGATTAGGGGGT 59.838 38.462 1.23 0.00 0.00 4.95
237 238 6.614657 ACCAATAGAATTGAAGATTAGGGGG 58.385 40.000 1.23 0.00 0.00 5.40
238 239 7.779798 TGAACCAATAGAATTGAAGATTAGGGG 59.220 37.037 1.23 0.00 0.00 4.79
239 240 8.752005 TGAACCAATAGAATTGAAGATTAGGG 57.248 34.615 1.23 0.00 0.00 3.53
240 241 9.401058 ACTGAACCAATAGAATTGAAGATTAGG 57.599 33.333 1.23 0.00 0.00 2.69
245 246 9.793259 ACTAAACTGAACCAATAGAATTGAAGA 57.207 29.630 1.23 0.00 0.00 2.87
249 250 9.774742 GCTAACTAAACTGAACCAATAGAATTG 57.225 33.333 0.00 0.00 0.00 2.32
250 251 8.957466 GGCTAACTAAACTGAACCAATAGAATT 58.043 33.333 0.00 0.00 0.00 2.17
251 252 7.280205 CGGCTAACTAAACTGAACCAATAGAAT 59.720 37.037 0.00 0.00 0.00 2.40
252 253 6.592607 CGGCTAACTAAACTGAACCAATAGAA 59.407 38.462 0.00 0.00 0.00 2.10
253 254 6.103997 CGGCTAACTAAACTGAACCAATAGA 58.896 40.000 0.00 0.00 0.00 1.98
254 255 5.293569 CCGGCTAACTAAACTGAACCAATAG 59.706 44.000 0.00 0.00 0.00 1.73
255 256 5.180271 CCGGCTAACTAAACTGAACCAATA 58.820 41.667 0.00 0.00 0.00 1.90
256 257 4.007659 CCGGCTAACTAAACTGAACCAAT 58.992 43.478 0.00 0.00 0.00 3.16
257 258 3.181452 ACCGGCTAACTAAACTGAACCAA 60.181 43.478 0.00 0.00 0.00 3.67
258 259 2.369532 ACCGGCTAACTAAACTGAACCA 59.630 45.455 0.00 0.00 0.00 3.67
259 260 3.049708 ACCGGCTAACTAAACTGAACC 57.950 47.619 0.00 0.00 0.00 3.62
260 261 6.544038 TTTTACCGGCTAACTAAACTGAAC 57.456 37.500 0.00 0.00 0.00 3.18
261 262 6.935771 TGATTTTACCGGCTAACTAAACTGAA 59.064 34.615 0.00 0.00 0.00 3.02
262 263 6.465948 TGATTTTACCGGCTAACTAAACTGA 58.534 36.000 0.00 0.00 0.00 3.41
263 264 6.730960 TGATTTTACCGGCTAACTAAACTG 57.269 37.500 0.00 0.00 0.00 3.16
264 265 7.446319 ACTTTGATTTTACCGGCTAACTAAACT 59.554 33.333 0.00 0.00 0.00 2.66
265 266 7.587629 ACTTTGATTTTACCGGCTAACTAAAC 58.412 34.615 0.00 0.00 0.00 2.01
266 267 7.748691 ACTTTGATTTTACCGGCTAACTAAA 57.251 32.000 0.00 0.00 0.00 1.85
267 268 8.845413 TTACTTTGATTTTACCGGCTAACTAA 57.155 30.769 0.00 0.00 0.00 2.24
268 269 8.720562 GTTTACTTTGATTTTACCGGCTAACTA 58.279 33.333 0.00 0.00 0.00 2.24
269 270 7.308770 GGTTTACTTTGATTTTACCGGCTAACT 60.309 37.037 0.00 0.00 0.00 2.24
270 271 6.803320 GGTTTACTTTGATTTTACCGGCTAAC 59.197 38.462 0.00 0.00 0.00 2.34
271 272 6.716173 AGGTTTACTTTGATTTTACCGGCTAA 59.284 34.615 0.00 0.00 0.00 3.09
272 273 6.240145 AGGTTTACTTTGATTTTACCGGCTA 58.760 36.000 0.00 0.00 0.00 3.93
273 274 5.074804 AGGTTTACTTTGATTTTACCGGCT 58.925 37.500 0.00 0.00 0.00 5.52
274 275 5.381174 AGGTTTACTTTGATTTTACCGGC 57.619 39.130 0.00 0.00 0.00 6.13
275 276 6.081693 CGAAGGTTTACTTTGATTTTACCGG 58.918 40.000 0.00 0.00 42.27 5.28
276 277 6.575942 CACGAAGGTTTACTTTGATTTTACCG 59.424 38.462 0.00 0.00 42.27 4.02
277 278 6.361481 GCACGAAGGTTTACTTTGATTTTACC 59.639 38.462 0.00 0.00 42.27 2.85
278 279 6.085849 CGCACGAAGGTTTACTTTGATTTTAC 59.914 38.462 0.00 0.00 42.27 2.01
279 280 6.137415 CGCACGAAGGTTTACTTTGATTTTA 58.863 36.000 0.00 0.00 42.27 1.52
280 281 4.973663 CGCACGAAGGTTTACTTTGATTTT 59.026 37.500 0.00 0.00 42.27 1.82
281 282 4.035909 ACGCACGAAGGTTTACTTTGATTT 59.964 37.500 0.00 0.00 42.27 2.17
282 283 3.562557 ACGCACGAAGGTTTACTTTGATT 59.437 39.130 0.00 0.00 42.27 2.57
283 284 3.135994 ACGCACGAAGGTTTACTTTGAT 58.864 40.909 0.00 0.00 42.27 2.57
284 285 2.540931 GACGCACGAAGGTTTACTTTGA 59.459 45.455 0.00 0.00 42.27 2.69
285 286 2.542595 AGACGCACGAAGGTTTACTTTG 59.457 45.455 0.00 0.00 44.72 2.77
286 287 2.830104 AGACGCACGAAGGTTTACTTT 58.170 42.857 0.00 0.00 40.21 2.66
287 288 2.521105 AGACGCACGAAGGTTTACTT 57.479 45.000 0.00 0.00 43.65 2.24
288 289 2.555757 ACTAGACGCACGAAGGTTTACT 59.444 45.455 0.00 0.00 0.00 2.24
289 290 2.938869 ACTAGACGCACGAAGGTTTAC 58.061 47.619 0.00 0.00 0.00 2.01
290 291 4.970662 ATACTAGACGCACGAAGGTTTA 57.029 40.909 0.00 0.00 0.00 2.01
291 292 3.863142 ATACTAGACGCACGAAGGTTT 57.137 42.857 0.00 0.00 0.00 3.27
292 293 3.508762 CAATACTAGACGCACGAAGGTT 58.491 45.455 0.00 0.00 0.00 3.50
293 294 2.734492 GCAATACTAGACGCACGAAGGT 60.734 50.000 0.00 0.00 0.00 3.50
294 295 1.852895 GCAATACTAGACGCACGAAGG 59.147 52.381 0.00 0.00 0.00 3.46
295 296 2.531912 CAGCAATACTAGACGCACGAAG 59.468 50.000 0.00 0.00 0.00 3.79
296 297 2.526077 CAGCAATACTAGACGCACGAA 58.474 47.619 0.00 0.00 0.00 3.85
297 298 1.797713 GCAGCAATACTAGACGCACGA 60.798 52.381 0.00 0.00 0.00 4.35
298 299 0.572590 GCAGCAATACTAGACGCACG 59.427 55.000 0.00 0.00 0.00 5.34
299 300 1.927895 AGCAGCAATACTAGACGCAC 58.072 50.000 0.00 0.00 0.00 5.34
300 301 3.793797 TTAGCAGCAATACTAGACGCA 57.206 42.857 0.00 0.00 0.00 5.24
301 302 6.200286 TGTTTATTAGCAGCAATACTAGACGC 59.800 38.462 0.00 0.00 0.00 5.19
302 303 7.694388 TGTTTATTAGCAGCAATACTAGACG 57.306 36.000 0.00 0.00 0.00 4.18
314 315 3.762779 GCAGTTGGCTGTTTATTAGCAG 58.237 45.455 0.00 0.00 44.32 4.24
315 316 3.848272 GCAGTTGGCTGTTTATTAGCA 57.152 42.857 0.00 0.00 44.32 3.49
329 330 4.274214 TGTGTCTTTCAAGATGAGCAGTTG 59.726 41.667 0.00 0.00 37.39 3.16
332 333 4.063689 AGTGTGTCTTTCAAGATGAGCAG 58.936 43.478 0.00 0.00 37.39 4.24
359 360 7.813645 ACTGAGACAAACTAGTTTTCGTTTTT 58.186 30.769 18.25 5.01 31.46 1.94
384 386 8.258850 AGAAAAGGTATAGGGATAATCGTCAA 57.741 34.615 0.00 0.00 0.00 3.18
391 393 9.933723 GCGTTATAAGAAAAGGTATAGGGATAA 57.066 33.333 0.00 0.00 0.00 1.75
429 431 3.826236 TCCTCTCGTACGTCTCTTTTG 57.174 47.619 16.05 0.00 0.00 2.44
442 444 1.923204 CAACGCAGATTCTTCCTCTCG 59.077 52.381 0.00 0.00 0.00 4.04
447 449 3.371285 GTCTTACCAACGCAGATTCTTCC 59.629 47.826 0.00 0.00 0.00 3.46
494 500 1.040339 GTGGTGTTTGTGGAGGCCAA 61.040 55.000 5.01 0.00 34.18 4.52
577 594 1.522676 CGTTTCCATGATCGATCCACG 59.477 52.381 22.31 15.39 44.09 4.94
582 610 4.336433 AGCAATTTCGTTTCCATGATCGAT 59.664 37.500 0.00 0.00 32.54 3.59
584 612 4.019919 AGCAATTTCGTTTCCATGATCG 57.980 40.909 0.00 0.00 0.00 3.69
646 679 1.225426 GCATGCCCACAGAGATCCA 59.775 57.895 6.36 0.00 0.00 3.41
742 786 6.017109 ACATTAATGGATGATGAAACCGTAGC 60.017 38.462 19.37 0.00 0.00 3.58
778 822 0.538057 CATGCTGGGACACAAGTGGT 60.538 55.000 5.08 0.00 34.19 4.16
779 823 1.870055 GCATGCTGGGACACAAGTGG 61.870 60.000 11.37 0.00 34.19 4.00
821 865 6.317642 TGCAACTTTGAGCACTACTCTTTTTA 59.682 34.615 0.00 0.00 46.41 1.52
822 866 5.125417 TGCAACTTTGAGCACTACTCTTTTT 59.875 36.000 0.00 0.00 46.41 1.94
828 872 3.199880 ACTGCAACTTTGAGCACTACT 57.800 42.857 0.00 0.00 36.62 2.57
835 923 4.275689 TCCAACATGTACTGCAACTTTGAG 59.724 41.667 0.00 0.00 0.00 3.02
882 971 1.978782 GCAACGAGTTACTGCATTTGC 59.021 47.619 0.00 0.00 42.50 3.68
884 973 2.226330 TGGCAACGAGTTACTGCATTT 58.774 42.857 0.00 0.00 37.83 2.32
956 1048 4.952335 GGATGAACCAGATCAAATGGAAGT 59.048 41.667 6.49 0.00 40.51 3.01
970 1062 4.292643 TCAGATCAGATGAGGATGAACCA 58.707 43.478 0.00 0.00 42.04 3.67
978 1070 3.823304 TGTCCGTATCAGATCAGATGAGG 59.177 47.826 10.66 12.48 0.00 3.86
979 1071 5.400703 CATGTCCGTATCAGATCAGATGAG 58.599 45.833 10.66 4.65 0.00 2.90
1015 1111 0.519961 GGCGACATTTTTACTGCCGT 59.480 50.000 0.00 0.00 32.14 5.68
1200 1296 7.498900 CCCATGCAGAGTTTAATTACTGTATCA 59.501 37.037 0.00 0.00 34.56 2.15
1210 1306 2.311542 TGTCCCCCATGCAGAGTTTAAT 59.688 45.455 0.00 0.00 0.00 1.40
1215 1311 2.304056 CCTGTCCCCCATGCAGAGT 61.304 63.158 0.00 0.00 32.39 3.24
1216 1312 1.980784 CTCCTGTCCCCCATGCAGAG 61.981 65.000 0.00 0.00 32.39 3.35
1218 1314 2.593978 CTCCTGTCCCCCATGCAG 59.406 66.667 0.00 0.00 0.00 4.41
1683 1779 1.117150 GGCCGGAGAGGTACATGTAA 58.883 55.000 5.05 0.00 43.70 2.41
1994 2090 2.588877 GGCGCCGCATCATGTACT 60.589 61.111 12.58 0.00 0.00 2.73
2236 2335 3.237741 GGCCCTCTCCTCCATCCG 61.238 72.222 0.00 0.00 0.00 4.18
2341 2449 0.250727 ATGTGGACAGTCCGGGTTTG 60.251 55.000 15.24 0.00 40.17 2.93
2500 2616 3.545703 AGAAACAGACACAAGAACCCAG 58.454 45.455 0.00 0.00 0.00 4.45
2502 2618 3.561725 CAGAGAAACAGACACAAGAACCC 59.438 47.826 0.00 0.00 0.00 4.11
2658 2780 7.094975 TGTGAGAATCGTTTCGTTAATTCCATT 60.095 33.333 0.72 0.00 38.61 3.16
2674 2796 5.729974 ACATCATTGTCATGTGAGAATCG 57.270 39.130 2.73 0.93 36.10 3.34
2688 2810 3.880047 AATGTTCTGGGCACATCATTG 57.120 42.857 11.52 0.00 33.54 2.82
2851 2973 9.410556 AGCACTGATGTAAACATTTATTTTCAC 57.589 29.630 0.00 0.00 36.57 3.18
2858 2980 7.686438 ACATGAGCACTGATGTAAACATTTA 57.314 32.000 0.00 0.00 36.57 1.40
2890 3012 8.527567 TTTTGGCTAAAGTATACAAATGTTGC 57.472 30.769 5.50 0.36 31.92 4.17
3049 3525 2.036256 AAAGCCGCTCCCAGCAAT 59.964 55.556 0.00 0.00 42.58 3.56
3136 3647 8.001549 CGGCAAATTTATTACTGAAAAACACAC 58.998 33.333 0.00 0.00 0.00 3.82
3301 3820 7.224557 ACTGTGTTAACTTTGAAAATTCATGGC 59.775 33.333 7.22 0.00 37.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.