Multiple sequence alignment - TraesCS7B01G101600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G101600 chr7B 100.000 4582 0 0 1 4582 115565615 115561034 0.000000e+00 8462.0
1 TraesCS7B01G101600 chr7B 90.015 651 64 1 40 690 614477020 614477669 0.000000e+00 841.0
2 TraesCS7B01G101600 chr7A 96.013 1229 34 11 1795 3021 155649122 155647907 0.000000e+00 1984.0
3 TraesCS7B01G101600 chr7A 89.882 1354 68 33 3257 4577 155647908 155646591 0.000000e+00 1677.0
4 TraesCS7B01G101600 chr7A 92.735 991 55 11 826 1802 155657934 155656947 0.000000e+00 1415.0
5 TraesCS7B01G101600 chr7D 95.441 987 27 9 826 1802 153783375 153782397 0.000000e+00 1557.0
6 TraesCS7B01G101600 chr7D 92.562 847 36 16 1795 2625 153776320 153775485 0.000000e+00 1190.0
7 TraesCS7B01G101600 chr7D 92.599 608 41 2 3257 3861 153775095 153774489 0.000000e+00 870.0
8 TraesCS7B01G101600 chr7D 95.364 302 12 2 3915 4214 153774482 153774181 3.210000e-131 479.0
9 TraesCS7B01G101600 chr7D 95.690 232 9 1 4346 4577 153774124 153773894 5.600000e-99 372.0
10 TraesCS7B01G101600 chr7D 93.182 88 6 0 729 816 153783445 153783358 3.720000e-26 130.0
11 TraesCS7B01G101600 chr7D 83.495 103 8 4 2928 3021 153775196 153775094 2.270000e-13 87.9
12 TraesCS7B01G101600 chr3B 90.263 647 60 3 45 690 507500133 507499489 0.000000e+00 843.0
13 TraesCS7B01G101600 chr3B 87.755 147 18 0 545 691 770970806 770970660 6.090000e-39 172.0
14 TraesCS7B01G101600 chr6B 89.954 647 63 2 42 688 502266976 502267620 0.000000e+00 833.0
15 TraesCS7B01G101600 chr6B 89.385 650 57 4 43 691 132894123 132893485 0.000000e+00 808.0
16 TraesCS7B01G101600 chr6B 97.479 238 6 0 3018 3255 206666874 206666637 1.530000e-109 407.0
17 TraesCS7B01G101600 chr2D 89.538 650 56 3 43 692 471986983 471987620 0.000000e+00 813.0
18 TraesCS7B01G101600 chr4A 89.009 646 66 2 46 691 611096680 611097320 0.000000e+00 795.0
19 TraesCS7B01G101600 chr4A 89.185 638 65 3 46 682 610683125 610682491 0.000000e+00 793.0
20 TraesCS7B01G101600 chr5B 89.009 646 62 4 46 691 704493501 704492865 0.000000e+00 791.0
21 TraesCS7B01G101600 chr5B 96.721 244 8 0 3018 3261 28603585 28603828 1.530000e-109 407.0
22 TraesCS7B01G101600 chr5B 96.311 244 9 0 3018 3261 33015224 33014981 7.140000e-108 401.0
23 TraesCS7B01G101600 chr5B 96.311 244 9 0 3018 3261 271808050 271807807 7.140000e-108 401.0
24 TraesCS7B01G101600 chr2B 88.735 648 70 2 45 690 100084749 100084103 0.000000e+00 789.0
25 TraesCS7B01G101600 chr1B 97.107 242 7 0 3017 3258 229946120 229945879 4.270000e-110 409.0
26 TraesCS7B01G101600 chr1B 96.311 244 9 0 3018 3261 506934054 506933811 7.140000e-108 401.0
27 TraesCS7B01G101600 chrUn 97.083 240 7 0 3019 3258 59805325 59805086 5.520000e-109 405.0
28 TraesCS7B01G101600 chrUn 97.071 239 7 0 3017 3255 119206051 119206289 1.990000e-108 403.0
29 TraesCS7B01G101600 chr4B 96.311 244 9 0 3018 3261 84778869 84778626 7.140000e-108 401.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G101600 chr7B 115561034 115565615 4581 True 8462.00 8462 100.0000 1 4582 1 chr7B.!!$R1 4581
1 TraesCS7B01G101600 chr7B 614477020 614477669 649 False 841.00 841 90.0150 40 690 1 chr7B.!!$F1 650
2 TraesCS7B01G101600 chr7A 155646591 155649122 2531 True 1830.50 1984 92.9475 1795 4577 2 chr7A.!!$R2 2782
3 TraesCS7B01G101600 chr7A 155656947 155657934 987 True 1415.00 1415 92.7350 826 1802 1 chr7A.!!$R1 976
4 TraesCS7B01G101600 chr7D 153782397 153783445 1048 True 843.50 1557 94.3115 729 1802 2 chr7D.!!$R2 1073
5 TraesCS7B01G101600 chr7D 153773894 153776320 2426 True 599.78 1190 91.9420 1795 4577 5 chr7D.!!$R1 2782
6 TraesCS7B01G101600 chr3B 507499489 507500133 644 True 843.00 843 90.2630 45 690 1 chr3B.!!$R1 645
7 TraesCS7B01G101600 chr6B 502266976 502267620 644 False 833.00 833 89.9540 42 688 1 chr6B.!!$F1 646
8 TraesCS7B01G101600 chr6B 132893485 132894123 638 True 808.00 808 89.3850 43 691 1 chr6B.!!$R1 648
9 TraesCS7B01G101600 chr2D 471986983 471987620 637 False 813.00 813 89.5380 43 692 1 chr2D.!!$F1 649
10 TraesCS7B01G101600 chr4A 611096680 611097320 640 False 795.00 795 89.0090 46 691 1 chr4A.!!$F1 645
11 TraesCS7B01G101600 chr4A 610682491 610683125 634 True 793.00 793 89.1850 46 682 1 chr4A.!!$R1 636
12 TraesCS7B01G101600 chr5B 704492865 704493501 636 True 791.00 791 89.0090 46 691 1 chr5B.!!$R3 645
13 TraesCS7B01G101600 chr2B 100084103 100084749 646 True 789.00 789 88.7350 45 690 1 chr2B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 758 0.908198 ATCCAACCAGCTCTGACCTC 59.092 55.000 0.0 0.0 0.0 3.85 F
1227 1258 1.134965 CCTCTCTAAACCTCAGCCACG 60.135 57.143 0.0 0.0 0.0 4.94 F
2878 2966 0.249120 TTCTGCGGTATCCCTGTGTG 59.751 55.000 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2191 2.489722 GCTGCAAAGGAGAAAACTAGGG 59.510 50.0 0.00 0.0 0.00 3.53 R
3212 3309 0.106918 TCCCCATTGTATTCCGTGCC 60.107 55.0 0.00 0.0 0.00 5.01 R
3892 3997 0.034574 TACATTTGCCCAGGCGACAT 60.035 50.0 3.83 0.0 45.51 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.927281 AAATAATGCAAGCATGAGGACTT 57.073 34.783 8.50 0.00 36.68 3.01
23 24 4.913335 ATAATGCAAGCATGAGGACTTG 57.087 40.909 8.50 1.31 44.88 3.16
24 25 2.502142 ATGCAAGCATGAGGACTTGA 57.498 45.000 6.76 1.90 44.89 3.02
25 26 2.275134 TGCAAGCATGAGGACTTGAA 57.725 45.000 13.13 1.91 44.89 2.69
26 27 2.799017 TGCAAGCATGAGGACTTGAAT 58.201 42.857 13.13 0.00 44.89 2.57
27 28 2.751259 TGCAAGCATGAGGACTTGAATC 59.249 45.455 13.13 0.00 44.89 2.52
28 29 2.751259 GCAAGCATGAGGACTTGAATCA 59.249 45.455 13.13 0.00 44.89 2.57
29 30 3.380637 GCAAGCATGAGGACTTGAATCAT 59.619 43.478 13.13 0.00 44.89 2.45
33 34 5.299531 AAGCATGAGGACTTGAATCATGATG 59.700 40.000 9.46 0.00 46.24 3.07
34 35 7.636280 AAGCATGAGGACTTGAATCATGATGG 61.636 42.308 9.46 3.10 46.24 3.51
35 36 4.160642 TGAGGACTTGAATCATGATGGG 57.839 45.455 9.46 2.75 0.00 4.00
36 37 2.883386 GAGGACTTGAATCATGATGGGC 59.117 50.000 9.46 2.83 0.00 5.36
37 38 2.512896 AGGACTTGAATCATGATGGGCT 59.487 45.455 9.46 0.00 0.00 5.19
38 39 2.621998 GGACTTGAATCATGATGGGCTG 59.378 50.000 9.46 2.04 0.00 4.85
39 40 3.548770 GACTTGAATCATGATGGGCTGA 58.451 45.455 9.46 0.00 0.00 4.26
40 41 3.949754 GACTTGAATCATGATGGGCTGAA 59.050 43.478 9.46 0.00 0.00 3.02
59 60 6.352137 GGCTGAAAATTAGGGATGAAAATGGT 60.352 38.462 0.00 0.00 0.00 3.55
190 192 5.838531 ACTGAAACAAAAACGGAATGGTA 57.161 34.783 0.00 0.00 0.00 3.25
308 311 7.877612 ACACACAATGACACAATGAGTAGAATA 59.122 33.333 0.00 0.00 0.00 1.75
335 338 5.198965 AGAATGGATCATTTGAGGACCAAG 58.801 41.667 0.00 0.00 33.90 3.61
367 370 3.004002 CACACACGTACTCAACTAGACCA 59.996 47.826 0.00 0.00 0.00 4.02
510 519 7.985589 AGGATTCAAGGAGGTTTTAAGTTCTA 58.014 34.615 0.00 0.00 0.00 2.10
537 546 2.987821 CAAACCGTTTTGTTTCCGTGTT 59.012 40.909 0.00 0.00 37.85 3.32
583 604 7.333672 GTCTGTTTCCGATAGTATTTGTTTCCT 59.666 37.037 0.00 0.00 0.00 3.36
596 617 8.562052 AGTATTTGTTTCCTTATTCGTTTTCGT 58.438 29.630 0.00 0.00 44.46 3.85
692 715 1.006832 CGCCGTTTTCATCCCTACTG 58.993 55.000 0.00 0.00 0.00 2.74
693 716 1.404986 CGCCGTTTTCATCCCTACTGA 60.405 52.381 0.00 0.00 0.00 3.41
694 717 2.706890 GCCGTTTTCATCCCTACTGAA 58.293 47.619 0.00 0.00 0.00 3.02
695 718 3.078837 GCCGTTTTCATCCCTACTGAAA 58.921 45.455 0.00 0.00 40.02 2.69
696 719 3.504520 GCCGTTTTCATCCCTACTGAAAA 59.495 43.478 7.02 7.02 45.49 2.29
702 725 7.938140 TTTTCATCCCTACTGAAAATACCAG 57.062 36.000 7.02 0.00 43.83 4.00
703 726 6.636454 TTCATCCCTACTGAAAATACCAGT 57.364 37.500 0.00 0.00 45.75 4.00
704 727 5.989477 TCATCCCTACTGAAAATACCAGTG 58.011 41.667 0.00 0.00 43.90 3.66
705 728 5.487488 TCATCCCTACTGAAAATACCAGTGT 59.513 40.000 0.00 0.00 43.90 3.55
706 729 5.416271 TCCCTACTGAAAATACCAGTGTC 57.584 43.478 0.00 0.00 43.90 3.67
707 730 4.224370 TCCCTACTGAAAATACCAGTGTCC 59.776 45.833 0.00 0.00 43.90 4.02
708 731 4.514401 CCTACTGAAAATACCAGTGTCCC 58.486 47.826 0.00 0.00 43.90 4.46
709 732 4.225267 CCTACTGAAAATACCAGTGTCCCT 59.775 45.833 0.00 0.00 43.90 4.20
710 733 4.287766 ACTGAAAATACCAGTGTCCCTC 57.712 45.455 0.00 0.00 42.68 4.30
711 734 3.910627 ACTGAAAATACCAGTGTCCCTCT 59.089 43.478 0.00 0.00 42.68 3.69
712 735 5.091552 ACTGAAAATACCAGTGTCCCTCTA 58.908 41.667 0.00 0.00 42.68 2.43
713 736 5.726793 ACTGAAAATACCAGTGTCCCTCTAT 59.273 40.000 0.00 0.00 42.68 1.98
714 737 6.127026 ACTGAAAATACCAGTGTCCCTCTATC 60.127 42.308 0.00 0.00 42.68 2.08
715 738 5.964477 TGAAAATACCAGTGTCCCTCTATCT 59.036 40.000 0.00 0.00 0.00 1.98
716 739 7.130099 TGAAAATACCAGTGTCCCTCTATCTA 58.870 38.462 0.00 0.00 0.00 1.98
717 740 7.789831 TGAAAATACCAGTGTCCCTCTATCTAT 59.210 37.037 0.00 0.00 0.00 1.98
718 741 7.784470 AAATACCAGTGTCCCTCTATCTATC 57.216 40.000 0.00 0.00 0.00 2.08
719 742 4.120946 ACCAGTGTCCCTCTATCTATCC 57.879 50.000 0.00 0.00 0.00 2.59
720 743 3.467483 ACCAGTGTCCCTCTATCTATCCA 59.533 47.826 0.00 0.00 0.00 3.41
721 744 4.078571 ACCAGTGTCCCTCTATCTATCCAA 60.079 45.833 0.00 0.00 0.00 3.53
722 745 4.282195 CCAGTGTCCCTCTATCTATCCAAC 59.718 50.000 0.00 0.00 0.00 3.77
723 746 4.282195 CAGTGTCCCTCTATCTATCCAACC 59.718 50.000 0.00 0.00 0.00 3.77
724 747 4.078571 AGTGTCCCTCTATCTATCCAACCA 60.079 45.833 0.00 0.00 0.00 3.67
725 748 4.282195 GTGTCCCTCTATCTATCCAACCAG 59.718 50.000 0.00 0.00 0.00 4.00
726 749 3.259625 GTCCCTCTATCTATCCAACCAGC 59.740 52.174 0.00 0.00 0.00 4.85
727 750 3.142977 TCCCTCTATCTATCCAACCAGCT 59.857 47.826 0.00 0.00 0.00 4.24
734 757 2.114616 CTATCCAACCAGCTCTGACCT 58.885 52.381 0.00 0.00 0.00 3.85
735 758 0.908198 ATCCAACCAGCTCTGACCTC 59.092 55.000 0.00 0.00 0.00 3.85
752 775 4.407621 TGACCTCTTGTTTTCAGTCCACTA 59.592 41.667 0.00 0.00 0.00 2.74
761 784 6.411376 TGTTTTCAGTCCACTAGTCTCAAAA 58.589 36.000 0.00 0.00 0.00 2.44
772 795 1.152860 TCTCAAAACAGCCCCGCAA 60.153 52.632 0.00 0.00 0.00 4.85
782 805 1.750778 CAGCCCCGCAACAGAATTATT 59.249 47.619 0.00 0.00 0.00 1.40
798 821 7.549488 ACAGAATTATTACTCCCGAAAAGACAG 59.451 37.037 0.00 0.00 0.00 3.51
799 822 7.011482 CAGAATTATTACTCCCGAAAAGACAGG 59.989 40.741 0.00 0.00 0.00 4.00
800 823 5.750352 TTATTACTCCCGAAAAGACAGGT 57.250 39.130 0.00 0.00 0.00 4.00
801 824 3.672767 TTACTCCCGAAAAGACAGGTC 57.327 47.619 0.00 0.00 0.00 3.85
802 825 1.420430 ACTCCCGAAAAGACAGGTCA 58.580 50.000 1.84 0.00 0.00 4.02
803 826 1.344763 ACTCCCGAAAAGACAGGTCAG 59.655 52.381 1.84 0.00 0.00 3.51
804 827 1.618837 CTCCCGAAAAGACAGGTCAGA 59.381 52.381 1.84 0.00 0.00 3.27
805 828 1.343465 TCCCGAAAAGACAGGTCAGAC 59.657 52.381 1.84 0.00 0.00 3.51
806 829 1.344763 CCCGAAAAGACAGGTCAGACT 59.655 52.381 0.00 0.00 0.00 3.24
807 830 2.224305 CCCGAAAAGACAGGTCAGACTT 60.224 50.000 0.00 0.00 0.00 3.01
808 831 3.467803 CCGAAAAGACAGGTCAGACTTT 58.532 45.455 0.00 0.00 35.57 2.66
809 832 4.502604 CCCGAAAAGACAGGTCAGACTTTA 60.503 45.833 0.00 0.00 33.55 1.85
810 833 4.448060 CCGAAAAGACAGGTCAGACTTTAC 59.552 45.833 0.00 0.00 33.55 2.01
811 834 4.148348 CGAAAAGACAGGTCAGACTTTACG 59.852 45.833 0.00 0.00 33.55 3.18
812 835 4.667519 AAAGACAGGTCAGACTTTACGT 57.332 40.909 0.00 0.00 33.07 3.57
813 836 4.667519 AAGACAGGTCAGACTTTACGTT 57.332 40.909 0.00 0.00 0.00 3.99
814 837 4.667519 AGACAGGTCAGACTTTACGTTT 57.332 40.909 0.00 0.00 0.00 3.60
815 838 5.019785 AGACAGGTCAGACTTTACGTTTT 57.980 39.130 0.00 0.00 0.00 2.43
816 839 5.425630 AGACAGGTCAGACTTTACGTTTTT 58.574 37.500 0.00 0.00 0.00 1.94
849 872 4.547406 AAGAGTTTACGTTTTCTGCACC 57.453 40.909 0.00 0.00 0.00 5.01
897 921 3.231965 ACGATTGTCGAGACACGTAAAG 58.768 45.455 16.57 5.03 43.74 1.85
899 923 1.401530 TTGTCGAGACACGTAAAGCG 58.598 50.000 5.30 0.00 41.67 4.68
946 971 1.850755 AACGGTCCAACCCCATCCT 60.851 57.895 0.00 0.00 33.75 3.24
1109 1140 4.619227 CCACCTTCGCACCACCGT 62.619 66.667 0.00 0.00 0.00 4.83
1227 1258 1.134965 CCTCTCTAAACCTCAGCCACG 60.135 57.143 0.00 0.00 0.00 4.94
1251 1282 3.009363 GCTACAACCCTAAACCCCAGTTA 59.991 47.826 0.00 0.00 34.19 2.24
1341 1373 1.594293 CCACGTGGTTGACTCGCTT 60.594 57.895 26.95 0.00 39.54 4.68
1525 1557 8.641541 TCATGATATCACTGAAAGCACTATGTA 58.358 33.333 7.78 0.00 37.60 2.29
1743 1785 8.834749 TGCATTCTGATTGATTGAATTTTTCA 57.165 26.923 3.86 0.00 38.04 2.69
1807 1849 8.718102 TTTAGTAGAGTTGGAATTGTATGCTC 57.282 34.615 0.00 0.00 0.00 4.26
1902 1944 2.562738 TCTTCGAGGTGCAAGAGATTCA 59.437 45.455 0.00 0.00 0.00 2.57
1969 2011 4.948847 TCCCAATCTAGTGAATGTCATCG 58.051 43.478 0.00 0.00 0.00 3.84
2256 2299 5.428253 TCATGTAAGTCTTGGCTATTGGAC 58.572 41.667 0.00 0.00 0.00 4.02
2290 2333 4.634004 TCCGCTAAATTCACCAACATACTG 59.366 41.667 0.00 0.00 0.00 2.74
2291 2334 4.394920 CCGCTAAATTCACCAACATACTGT 59.605 41.667 0.00 0.00 0.00 3.55
2292 2335 5.106317 CCGCTAAATTCACCAACATACTGTT 60.106 40.000 0.00 0.00 42.08 3.16
2293 2336 6.092944 CCGCTAAATTCACCAACATACTGTTA 59.907 38.462 0.00 0.00 38.77 2.41
2294 2337 6.959311 CGCTAAATTCACCAACATACTGTTAC 59.041 38.462 0.00 0.00 38.77 2.50
2295 2338 7.148474 CGCTAAATTCACCAACATACTGTTACT 60.148 37.037 0.00 0.00 38.77 2.24
2296 2339 7.962918 GCTAAATTCACCAACATACTGTTACTG 59.037 37.037 0.00 0.00 38.77 2.74
2301 2344 5.303333 TCACCAACATACTGTTACTGTCTGA 59.697 40.000 12.96 0.00 38.77 3.27
2309 2352 7.594015 ACATACTGTTACTGTCTGAAACTAACG 59.406 37.037 12.96 0.00 0.00 3.18
2531 2581 7.275920 ACATGGTATTCAGTCAGTATCTTTCC 58.724 38.462 0.00 0.00 0.00 3.13
2745 2833 8.588472 ACCTTGCTAAAGCTTTTCTGAAATATT 58.412 29.630 18.47 0.62 42.66 1.28
2856 2944 9.443283 GCTTATCAACAGACACAATTATTGATC 57.557 33.333 12.28 8.60 37.77 2.92
2872 2960 1.412710 TGATCTGTTCTGCGGTATCCC 59.587 52.381 0.00 0.00 0.00 3.85
2877 2965 0.249398 GTTCTGCGGTATCCCTGTGT 59.751 55.000 0.00 0.00 0.00 3.72
2878 2966 0.249120 TTCTGCGGTATCCCTGTGTG 59.751 55.000 0.00 0.00 0.00 3.82
2884 2972 2.888594 CGGTATCCCTGTGTGTACTTG 58.111 52.381 0.00 0.00 0.00 3.16
2967 3055 7.990886 TCCCTTAACTAATTCATGACCATGTAC 59.009 37.037 9.53 0.00 39.72 2.90
2974 3062 3.452755 TCATGACCATGTACGATGTCC 57.547 47.619 9.53 0.00 39.72 4.02
2975 3063 2.763448 TCATGACCATGTACGATGTCCA 59.237 45.455 9.53 3.93 39.72 4.02
2976 3064 3.387699 TCATGACCATGTACGATGTCCAT 59.612 43.478 9.53 5.50 39.72 3.41
2977 3065 4.586841 TCATGACCATGTACGATGTCCATA 59.413 41.667 9.53 0.00 39.72 2.74
2978 3066 5.069781 TCATGACCATGTACGATGTCCATAA 59.930 40.000 9.53 0.00 39.72 1.90
2979 3067 5.545063 TGACCATGTACGATGTCCATAAT 57.455 39.130 0.00 0.00 0.00 1.28
2980 3068 6.658188 TGACCATGTACGATGTCCATAATA 57.342 37.500 0.00 0.00 0.00 0.98
2981 3069 7.056844 TGACCATGTACGATGTCCATAATAA 57.943 36.000 0.00 0.00 0.00 1.40
2982 3070 7.676004 TGACCATGTACGATGTCCATAATAAT 58.324 34.615 0.00 0.00 0.00 1.28
3023 3120 9.760660 CAACTTTTGCTAATTGATGACTACTAC 57.239 33.333 0.00 0.00 0.00 2.73
3024 3121 8.494016 ACTTTTGCTAATTGATGACTACTACC 57.506 34.615 0.00 0.00 0.00 3.18
3025 3122 8.322091 ACTTTTGCTAATTGATGACTACTACCT 58.678 33.333 0.00 0.00 0.00 3.08
3026 3123 8.718102 TTTTGCTAATTGATGACTACTACCTC 57.282 34.615 0.00 0.00 0.00 3.85
3027 3124 6.406692 TGCTAATTGATGACTACTACCTCC 57.593 41.667 0.00 0.00 0.00 4.30
3028 3125 5.009710 TGCTAATTGATGACTACTACCTCCG 59.990 44.000 0.00 0.00 0.00 4.63
3029 3126 5.009811 GCTAATTGATGACTACTACCTCCGT 59.990 44.000 0.00 0.00 0.00 4.69
3030 3127 5.517322 AATTGATGACTACTACCTCCGTC 57.483 43.478 0.00 0.00 0.00 4.79
3031 3128 2.928334 TGATGACTACTACCTCCGTCC 58.072 52.381 0.00 0.00 0.00 4.79
3032 3129 2.508716 TGATGACTACTACCTCCGTCCT 59.491 50.000 0.00 0.00 0.00 3.85
3033 3130 2.414994 TGACTACTACCTCCGTCCTG 57.585 55.000 0.00 0.00 0.00 3.86
3034 3131 1.064906 TGACTACTACCTCCGTCCTGG 60.065 57.143 0.00 0.00 40.09 4.45
3035 3132 0.998145 ACTACTACCTCCGTCCTGGT 59.002 55.000 0.00 0.00 39.52 4.00
3036 3133 1.357079 ACTACTACCTCCGTCCTGGTT 59.643 52.381 0.00 0.00 39.52 3.67
3037 3134 2.225217 ACTACTACCTCCGTCCTGGTTT 60.225 50.000 0.00 0.00 39.52 3.27
3038 3135 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
3039 3136 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
3040 3137 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
3041 3138 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
3042 3139 2.395619 ACCTCCGTCCTGGTTTATAGG 58.604 52.381 0.00 0.00 39.52 2.57
3043 3140 2.292719 ACCTCCGTCCTGGTTTATAGGT 60.293 50.000 0.00 0.00 35.62 3.08
3044 3141 2.364647 CCTCCGTCCTGGTTTATAGGTC 59.635 54.545 0.00 0.00 39.52 3.85
3045 3142 2.364647 CTCCGTCCTGGTTTATAGGTCC 59.635 54.545 0.00 0.00 39.52 4.46
3046 3143 1.415289 CCGTCCTGGTTTATAGGTCCC 59.585 57.143 0.00 0.00 36.67 4.46
3047 3144 1.415289 CGTCCTGGTTTATAGGTCCCC 59.585 57.143 0.00 0.00 36.67 4.81
3048 3145 2.772930 GTCCTGGTTTATAGGTCCCCT 58.227 52.381 0.00 0.00 36.67 4.79
3049 3146 3.120898 GTCCTGGTTTATAGGTCCCCTT 58.879 50.000 0.00 0.00 36.67 3.95
3050 3147 3.526430 GTCCTGGTTTATAGGTCCCCTTT 59.474 47.826 0.00 0.00 36.67 3.11
3051 3148 3.526019 TCCTGGTTTATAGGTCCCCTTTG 59.474 47.826 0.00 0.00 36.67 2.77
3052 3149 3.268595 CCTGGTTTATAGGTCCCCTTTGT 59.731 47.826 0.00 0.00 34.61 2.83
3053 3150 4.475747 CCTGGTTTATAGGTCCCCTTTGTA 59.524 45.833 0.00 0.00 34.61 2.41
3054 3151 5.397559 CCTGGTTTATAGGTCCCCTTTGTAG 60.398 48.000 0.00 0.00 34.61 2.74
3055 3152 5.102967 TGGTTTATAGGTCCCCTTTGTAGT 58.897 41.667 0.00 0.00 34.61 2.73
3056 3153 5.552766 TGGTTTATAGGTCCCCTTTGTAGTT 59.447 40.000 0.00 0.00 34.61 2.24
3057 3154 6.045813 TGGTTTATAGGTCCCCTTTGTAGTTT 59.954 38.462 0.00 0.00 34.61 2.66
3058 3155 6.376299 GGTTTATAGGTCCCCTTTGTAGTTTG 59.624 42.308 0.00 0.00 34.61 2.93
3059 3156 6.707273 TTATAGGTCCCCTTTGTAGTTTGT 57.293 37.500 0.00 0.00 34.61 2.83
3060 3157 3.223674 AGGTCCCCTTTGTAGTTTGTG 57.776 47.619 0.00 0.00 0.00 3.33
3061 3158 2.512476 AGGTCCCCTTTGTAGTTTGTGT 59.488 45.455 0.00 0.00 0.00 3.72
3062 3159 3.053170 AGGTCCCCTTTGTAGTTTGTGTT 60.053 43.478 0.00 0.00 0.00 3.32
3063 3160 4.166531 AGGTCCCCTTTGTAGTTTGTGTTA 59.833 41.667 0.00 0.00 0.00 2.41
3064 3161 4.888823 GGTCCCCTTTGTAGTTTGTGTTAA 59.111 41.667 0.00 0.00 0.00 2.01
3065 3162 5.360429 GGTCCCCTTTGTAGTTTGTGTTAAA 59.640 40.000 0.00 0.00 0.00 1.52
3066 3163 6.041182 GGTCCCCTTTGTAGTTTGTGTTAAAT 59.959 38.462 0.00 0.00 0.00 1.40
3067 3164 7.418139 GGTCCCCTTTGTAGTTTGTGTTAAATT 60.418 37.037 0.00 0.00 0.00 1.82
3068 3165 7.982919 GTCCCCTTTGTAGTTTGTGTTAAATTT 59.017 33.333 0.00 0.00 0.00 1.82
3069 3166 8.541234 TCCCCTTTGTAGTTTGTGTTAAATTTT 58.459 29.630 0.00 0.00 0.00 1.82
3070 3167 8.608317 CCCCTTTGTAGTTTGTGTTAAATTTTG 58.392 33.333 0.00 0.00 0.00 2.44
3071 3168 9.372369 CCCTTTGTAGTTTGTGTTAAATTTTGA 57.628 29.630 0.00 0.00 0.00 2.69
3108 3205 9.979578 AACTAAGAAAATGTTAATGCATGTCAA 57.020 25.926 0.00 0.00 0.00 3.18
3109 3206 9.630098 ACTAAGAAAATGTTAATGCATGTCAAG 57.370 29.630 0.00 0.00 0.00 3.02
3110 3207 7.894376 AAGAAAATGTTAATGCATGTCAAGG 57.106 32.000 0.00 0.00 0.00 3.61
3111 3208 7.230849 AGAAAATGTTAATGCATGTCAAGGA 57.769 32.000 0.00 0.00 0.00 3.36
3112 3209 7.669427 AGAAAATGTTAATGCATGTCAAGGAA 58.331 30.769 0.00 0.00 0.00 3.36
3113 3210 8.149647 AGAAAATGTTAATGCATGTCAAGGAAA 58.850 29.630 0.00 0.00 0.00 3.13
3114 3211 8.674263 AAAATGTTAATGCATGTCAAGGAAAA 57.326 26.923 0.00 0.00 0.00 2.29
3115 3212 8.851541 AAATGTTAATGCATGTCAAGGAAAAT 57.148 26.923 0.00 0.00 0.00 1.82
3116 3213 8.851541 AATGTTAATGCATGTCAAGGAAAATT 57.148 26.923 0.00 0.00 0.00 1.82
3117 3214 9.941325 AATGTTAATGCATGTCAAGGAAAATTA 57.059 25.926 0.00 0.00 0.00 1.40
3119 3216 9.585099 TGTTAATGCATGTCAAGGAAAATTATC 57.415 29.630 0.00 0.00 0.00 1.75
3120 3217 9.807649 GTTAATGCATGTCAAGGAAAATTATCT 57.192 29.630 0.00 0.00 0.00 1.98
3122 3219 7.649533 ATGCATGTCAAGGAAAATTATCTCA 57.350 32.000 0.00 0.00 0.00 3.27
3123 3220 7.649533 TGCATGTCAAGGAAAATTATCTCAT 57.350 32.000 0.00 0.00 0.00 2.90
3124 3221 8.070034 TGCATGTCAAGGAAAATTATCTCATT 57.930 30.769 0.00 0.00 0.00 2.57
3125 3222 7.977293 TGCATGTCAAGGAAAATTATCTCATTG 59.023 33.333 0.00 4.13 0.00 2.82
3126 3223 8.192774 GCATGTCAAGGAAAATTATCTCATTGA 58.807 33.333 7.65 7.65 0.00 2.57
3132 3229 9.793252 CAAGGAAAATTATCTCATTGAATTCGT 57.207 29.630 0.04 0.00 0.00 3.85
3174 3271 9.149225 TCAAAAATATAATGTTTGGTGACATGC 57.851 29.630 0.00 0.00 40.03 4.06
3175 3272 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
3176 3273 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
3177 3274 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
3178 3275 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
3179 3276 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
3180 3277 1.064803 TGTTTGGTGACATGCGTGAAC 59.935 47.619 14.17 10.22 42.32 3.18
3181 3278 1.064803 GTTTGGTGACATGCGTGAACA 59.935 47.619 14.17 9.53 42.32 3.18
3182 3279 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
3183 3280 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
3184 3281 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
3185 3282 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
3186 3283 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
3187 3284 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
3188 3285 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
3189 3286 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
3190 3287 5.115472 GTGACATGCGTGAACATTTTGTTAG 59.885 40.000 14.17 0.00 41.28 2.34
3191 3288 5.181690 ACATGCGTGAACATTTTGTTAGT 57.818 34.783 14.17 0.00 41.28 2.24
3192 3289 5.587289 ACATGCGTGAACATTTTGTTAGTT 58.413 33.333 14.17 0.00 41.28 2.24
3193 3290 6.039616 ACATGCGTGAACATTTTGTTAGTTT 58.960 32.000 14.17 0.00 41.28 2.66
3194 3291 7.197017 ACATGCGTGAACATTTTGTTAGTTTA 58.803 30.769 14.17 0.00 41.28 2.01
3195 3292 7.702772 ACATGCGTGAACATTTTGTTAGTTTAA 59.297 29.630 14.17 0.00 41.28 1.52
3196 3293 8.698854 CATGCGTGAACATTTTGTTAGTTTAAT 58.301 29.630 0.00 0.00 41.28 1.40
3197 3294 8.276060 TGCGTGAACATTTTGTTAGTTTAATC 57.724 30.769 0.00 0.00 41.28 1.75
3198 3295 8.132362 TGCGTGAACATTTTGTTAGTTTAATCT 58.868 29.630 0.00 0.00 41.28 2.40
3199 3296 9.601971 GCGTGAACATTTTGTTAGTTTAATCTA 57.398 29.630 0.00 0.00 41.28 1.98
3215 3312 8.592809 AGTTTAATCTATGGTCAAAATTTGGCA 58.407 29.630 12.62 0.00 36.88 4.92
3216 3313 8.655970 GTTTAATCTATGGTCAAAATTTGGCAC 58.344 33.333 12.62 1.03 36.88 5.01
3217 3314 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
3218 3315 2.453983 ATGGTCAAAATTTGGCACGG 57.546 45.000 12.62 0.00 36.88 4.94
3219 3316 1.403814 TGGTCAAAATTTGGCACGGA 58.596 45.000 12.62 0.00 36.88 4.69
3220 3317 1.757118 TGGTCAAAATTTGGCACGGAA 59.243 42.857 12.62 0.00 36.88 4.30
3221 3318 2.366916 TGGTCAAAATTTGGCACGGAAT 59.633 40.909 12.62 0.00 36.88 3.01
3222 3319 3.574396 TGGTCAAAATTTGGCACGGAATA 59.426 39.130 12.62 0.00 36.88 1.75
3223 3320 3.924073 GGTCAAAATTTGGCACGGAATAC 59.076 43.478 12.62 0.00 36.88 1.89
3224 3321 4.551388 GTCAAAATTTGGCACGGAATACA 58.449 39.130 5.33 0.00 34.79 2.29
3225 3322 4.985409 GTCAAAATTTGGCACGGAATACAA 59.015 37.500 5.33 0.00 34.79 2.41
3226 3323 5.637387 GTCAAAATTTGGCACGGAATACAAT 59.363 36.000 5.33 0.00 34.79 2.71
3227 3324 5.636965 TCAAAATTTGGCACGGAATACAATG 59.363 36.000 5.83 0.00 0.00 2.82
3228 3325 3.799281 ATTTGGCACGGAATACAATGG 57.201 42.857 0.00 0.00 0.00 3.16
3229 3326 1.468985 TTGGCACGGAATACAATGGG 58.531 50.000 0.00 0.00 0.00 4.00
3230 3327 0.395036 TGGCACGGAATACAATGGGG 60.395 55.000 0.00 0.00 0.00 4.96
3231 3328 0.106918 GGCACGGAATACAATGGGGA 60.107 55.000 0.00 0.00 0.00 4.81
3232 3329 1.021968 GCACGGAATACAATGGGGAC 58.978 55.000 0.00 0.00 0.00 4.46
3246 3343 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
3247 3344 0.745486 GGGACCAATAAACCCGGACG 60.745 60.000 0.73 0.00 34.03 4.79
3248 3345 0.745486 GGACCAATAAACCCGGACGG 60.745 60.000 0.73 3.25 37.81 4.79
3249 3346 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
3250 3347 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
3251 3348 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
3252 3349 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
3253 3350 1.481772 CAATAAACCCGGACGGAGGTA 59.518 52.381 13.13 1.24 34.45 3.08
3254 3351 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
3255 3352 1.322538 TAAACCCGGACGGAGGTAGC 61.323 60.000 13.13 0.00 34.45 3.58
3365 3462 9.868160 AAGGATAAAACTCCCAATATCTTAAGG 57.132 33.333 1.85 0.00 35.79 2.69
3475 3572 0.463833 CCTCGGCAACCAGGTAATCC 60.464 60.000 0.00 0.00 0.00 3.01
3477 3574 1.760613 CTCGGCAACCAGGTAATCCTA 59.239 52.381 0.00 0.00 43.07 2.94
3481 3581 2.092375 GGCAACCAGGTAATCCTAAGCT 60.092 50.000 0.00 0.00 43.07 3.74
3488 3588 3.629398 CAGGTAATCCTAAGCTGCCTTTG 59.371 47.826 0.00 0.00 43.07 2.77
3505 3605 4.276058 CTTTGGGAAAGGCACATCATTT 57.724 40.909 0.00 0.00 34.85 2.32
3508 3608 2.562298 TGGGAAAGGCACATCATTTGAC 59.438 45.455 0.00 0.00 0.00 3.18
3514 3614 4.510038 AGGCACATCATTTGACAAGTTC 57.490 40.909 0.00 0.00 0.00 3.01
3520 3620 7.546667 GGCACATCATTTGACAAGTTCATTATT 59.453 33.333 0.00 0.00 32.84 1.40
3521 3621 8.589629 GCACATCATTTGACAAGTTCATTATTC 58.410 33.333 0.00 0.00 32.84 1.75
3522 3622 9.079833 CACATCATTTGACAAGTTCATTATTCC 57.920 33.333 0.00 0.00 32.84 3.01
3560 3663 4.202441 GCATTTCATGTCATCCAGGTACT 58.798 43.478 0.00 0.00 43.88 2.73
3583 3686 6.098982 ACTCCTTCTAAGACACCATTATGAGG 59.901 42.308 0.00 0.00 0.00 3.86
3623 3728 5.048782 TGGTAGACACACAATGATCAAAAGC 60.049 40.000 0.00 0.00 0.00 3.51
3654 3759 1.600058 TGCTCTCCCTCCAAATGGAT 58.400 50.000 1.93 0.00 44.46 3.41
3681 3786 3.243771 ACTGGAAGACGACGATTGTTCTT 60.244 43.478 0.00 0.00 37.43 2.52
3688 3793 2.221055 ACGACGATTGTTCTTGAAGCAC 59.779 45.455 0.00 0.00 0.00 4.40
3690 3795 1.531149 ACGATTGTTCTTGAAGCACGG 59.469 47.619 0.00 0.00 0.00 4.94
3762 3867 3.009473 ACTGGTGCTTCACTCCATGTATT 59.991 43.478 0.00 0.00 41.03 1.89
3763 3868 4.012374 CTGGTGCTTCACTCCATGTATTT 58.988 43.478 0.00 0.00 41.03 1.40
3790 3895 3.243068 ACAAAAAGTCGCAGATGTTCCAC 60.243 43.478 0.00 0.00 40.67 4.02
3811 3916 6.204301 TCCACTAGAGAATACTACGTACATGC 59.796 42.308 0.00 0.00 0.00 4.06
3861 3966 6.019479 GTCGGCATTTCTTATGTAGAACAGAG 60.019 42.308 0.00 0.00 42.50 3.35
3863 3968 6.535150 CGGCATTTCTTATGTAGAACAGAGAA 59.465 38.462 5.18 5.18 42.50 2.87
3864 3969 7.254252 CGGCATTTCTTATGTAGAACAGAGAAG 60.254 40.741 7.99 2.61 42.50 2.85
3865 3970 7.405769 GCATTTCTTATGTAGAACAGAGAAGC 58.594 38.462 7.99 6.60 42.50 3.86
3867 3972 8.602328 CATTTCTTATGTAGAACAGAGAAGCAG 58.398 37.037 7.99 2.26 42.50 4.24
3868 3973 7.468141 TTCTTATGTAGAACAGAGAAGCAGA 57.532 36.000 5.18 0.00 37.96 4.26
3870 3975 4.734398 ATGTAGAACAGAGAAGCAGAGG 57.266 45.455 0.00 0.00 0.00 3.69
3872 3977 3.898123 TGTAGAACAGAGAAGCAGAGGTT 59.102 43.478 0.00 0.00 0.00 3.50
3876 3981 2.324541 ACAGAGAAGCAGAGGTTGTCT 58.675 47.619 3.19 3.19 42.77 3.41
3877 3982 2.298729 ACAGAGAAGCAGAGGTTGTCTC 59.701 50.000 5.75 0.00 40.69 3.36
3892 3997 2.666317 TGTCTCTGAACAGACACAGGA 58.334 47.619 8.40 0.00 46.43 3.86
3893 3998 3.234353 TGTCTCTGAACAGACACAGGAT 58.766 45.455 8.40 0.00 46.43 3.24
3894 3999 3.006217 TGTCTCTGAACAGACACAGGATG 59.994 47.826 8.40 0.00 46.43 3.51
3895 4000 5.477496 TGTCTCTGAACAGACACAGGATGT 61.477 45.833 8.40 0.00 46.43 3.06
3981 4086 9.220767 GACTTAGAAATAAGTTGTCCTTGTCAT 57.779 33.333 2.44 0.00 40.09 3.06
4018 4123 1.070175 CCGTTGGTTTCTTGCTACGTG 60.070 52.381 0.00 0.00 0.00 4.49
4218 4327 1.205893 CTACCTTCCCACAGAGCAGAC 59.794 57.143 0.00 0.00 0.00 3.51
4225 4334 2.093473 CACAGAGCAGACGCAGAGC 61.093 63.158 0.00 0.00 42.27 4.09
4233 4342 1.000771 AGACGCAGAGCCCAGACTA 60.001 57.895 0.00 0.00 0.00 2.59
4250 4359 4.857588 CAGACTACTGACGACCATTACAAC 59.142 45.833 0.00 0.00 46.03 3.32
4251 4360 4.521639 AGACTACTGACGACCATTACAACA 59.478 41.667 0.00 0.00 0.00 3.33
4252 4361 5.185249 AGACTACTGACGACCATTACAACAT 59.815 40.000 0.00 0.00 0.00 2.71
4319 4436 8.792830 AACGGCAAGTTATATTATCTATGCAT 57.207 30.769 3.79 3.79 42.14 3.96
4320 4437 8.425577 ACGGCAAGTTATATTATCTATGCATC 57.574 34.615 0.19 0.00 34.37 3.91
4333 4450 8.655651 TTATCTATGCATCAATTTGTGTACGA 57.344 30.769 0.19 0.00 0.00 3.43
4336 4453 4.403015 TGCATCAATTTGTGTACGACTG 57.597 40.909 0.00 0.00 0.00 3.51
4338 4455 3.407252 CATCAATTTGTGTACGACTGCG 58.593 45.455 0.00 0.00 44.79 5.18
4340 4457 2.473609 TCAATTTGTGTACGACTGCGAC 59.526 45.455 0.00 0.00 41.64 5.19
4341 4458 2.433868 ATTTGTGTACGACTGCGACT 57.566 45.000 0.00 0.00 41.64 4.18
4342 4459 3.564235 ATTTGTGTACGACTGCGACTA 57.436 42.857 0.00 0.00 41.64 2.59
4343 4460 2.320805 TTGTGTACGACTGCGACTAC 57.679 50.000 0.00 0.00 41.64 2.73
4344 4461 1.516161 TGTGTACGACTGCGACTACT 58.484 50.000 0.00 0.00 41.64 2.57
4349 4466 0.031585 ACGACTGCGACTACTGCAAA 59.968 50.000 0.00 0.00 42.70 3.68
4459 4584 3.194116 TCGTCAAGCTTTATAACCCGAGT 59.806 43.478 0.00 0.00 0.00 4.18
4502 4627 1.097547 CATCCACCCATCTTGCCGAC 61.098 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.954200 TCAAGTCCTCATGCTTGCATTA 58.046 40.909 5.24 0.00 41.15 1.90
4 5 2.799017 TCAAGTCCTCATGCTTGCATT 58.201 42.857 5.24 0.00 41.15 3.56
5 6 2.502142 TCAAGTCCTCATGCTTGCAT 57.498 45.000 1.81 1.81 41.15 3.96
6 7 2.275134 TTCAAGTCCTCATGCTTGCA 57.725 45.000 0.00 0.00 41.15 4.08
7 8 2.751259 TGATTCAAGTCCTCATGCTTGC 59.249 45.455 6.06 0.00 41.15 4.01
8 9 4.638865 TCATGATTCAAGTCCTCATGCTTG 59.361 41.667 6.84 4.85 43.74 4.01
9 10 4.851843 TCATGATTCAAGTCCTCATGCTT 58.148 39.130 6.84 0.00 43.74 3.91
10 11 4.498894 TCATGATTCAAGTCCTCATGCT 57.501 40.909 6.84 0.00 43.74 3.79
11 12 4.023107 CCATCATGATTCAAGTCCTCATGC 60.023 45.833 5.16 0.00 43.74 4.06
12 13 4.519350 CCCATCATGATTCAAGTCCTCATG 59.481 45.833 5.16 5.60 44.85 3.07
13 14 4.726583 CCCATCATGATTCAAGTCCTCAT 58.273 43.478 5.16 0.00 0.00 2.90
14 15 3.686405 GCCCATCATGATTCAAGTCCTCA 60.686 47.826 5.16 0.00 0.00 3.86
15 16 2.883386 GCCCATCATGATTCAAGTCCTC 59.117 50.000 5.16 0.00 0.00 3.71
16 17 2.512896 AGCCCATCATGATTCAAGTCCT 59.487 45.455 5.16 0.00 0.00 3.85
17 18 2.621998 CAGCCCATCATGATTCAAGTCC 59.378 50.000 5.16 0.00 0.00 3.85
18 19 3.548770 TCAGCCCATCATGATTCAAGTC 58.451 45.455 5.16 0.00 0.00 3.01
19 20 3.657398 TCAGCCCATCATGATTCAAGT 57.343 42.857 5.16 0.00 0.00 3.16
20 21 4.994907 TTTCAGCCCATCATGATTCAAG 57.005 40.909 5.16 0.00 0.00 3.02
21 22 5.943349 ATTTTCAGCCCATCATGATTCAA 57.057 34.783 5.16 0.00 0.00 2.69
22 23 5.943349 AATTTTCAGCCCATCATGATTCA 57.057 34.783 5.16 0.00 0.00 2.57
23 24 6.453092 CCTAATTTTCAGCCCATCATGATTC 58.547 40.000 5.16 0.00 0.00 2.52
24 25 5.306160 CCCTAATTTTCAGCCCATCATGATT 59.694 40.000 5.16 0.00 0.00 2.57
25 26 4.836736 CCCTAATTTTCAGCCCATCATGAT 59.163 41.667 1.18 1.18 0.00 2.45
26 27 4.079269 TCCCTAATTTTCAGCCCATCATGA 60.079 41.667 0.00 0.00 0.00 3.07
27 28 4.217510 TCCCTAATTTTCAGCCCATCATG 58.782 43.478 0.00 0.00 0.00 3.07
28 29 4.541250 TCCCTAATTTTCAGCCCATCAT 57.459 40.909 0.00 0.00 0.00 2.45
29 30 4.079269 TCATCCCTAATTTTCAGCCCATCA 60.079 41.667 0.00 0.00 0.00 3.07
30 31 4.473444 TCATCCCTAATTTTCAGCCCATC 58.527 43.478 0.00 0.00 0.00 3.51
31 32 4.541250 TCATCCCTAATTTTCAGCCCAT 57.459 40.909 0.00 0.00 0.00 4.00
32 33 4.329638 TTCATCCCTAATTTTCAGCCCA 57.670 40.909 0.00 0.00 0.00 5.36
33 34 5.675684 TTTTCATCCCTAATTTTCAGCCC 57.324 39.130 0.00 0.00 0.00 5.19
34 35 6.051074 CCATTTTCATCCCTAATTTTCAGCC 58.949 40.000 0.00 0.00 0.00 4.85
35 36 6.536224 CACCATTTTCATCCCTAATTTTCAGC 59.464 38.462 0.00 0.00 0.00 4.26
36 37 7.546667 CACACCATTTTCATCCCTAATTTTCAG 59.453 37.037 0.00 0.00 0.00 3.02
37 38 7.385267 CACACCATTTTCATCCCTAATTTTCA 58.615 34.615 0.00 0.00 0.00 2.69
38 39 6.818142 CCACACCATTTTCATCCCTAATTTTC 59.182 38.462 0.00 0.00 0.00 2.29
39 40 6.500049 TCCACACCATTTTCATCCCTAATTTT 59.500 34.615 0.00 0.00 0.00 1.82
40 41 6.022315 TCCACACCATTTTCATCCCTAATTT 58.978 36.000 0.00 0.00 0.00 1.82
190 192 1.202722 ACGTCTGTTCCACCGGAAAAT 60.203 47.619 9.46 0.00 43.86 1.82
268 271 7.281999 TGTCATTGTGTGTTCTTTGATAGTTGA 59.718 33.333 0.00 0.00 0.00 3.18
308 311 6.069440 TGGTCCTCAAATGATCCATTCTACTT 60.069 38.462 0.00 0.00 32.43 2.24
317 320 5.728637 AAAACTTGGTCCTCAAATGATCC 57.271 39.130 0.00 0.00 34.56 3.36
335 338 5.280945 TGAGTACGTGTGTGGTAGTAAAAC 58.719 41.667 0.00 0.00 0.00 2.43
410 413 9.528489 ACTCCAAAATAATATGGTTGTGTTAGT 57.472 29.630 0.00 0.00 37.94 2.24
473 482 9.320295 ACCTCCTTGAATCCTAGAGAAATATAG 57.680 37.037 0.00 0.00 0.00 1.31
486 495 7.883833 ACTAGAACTTAAAACCTCCTTGAATCC 59.116 37.037 0.00 0.00 0.00 3.01
537 546 2.076100 CACGGAGCAAATACAGAGCAA 58.924 47.619 0.00 0.00 0.00 3.91
583 604 5.738118 ACAGAAACCACGAAAACGAATAA 57.262 34.783 0.00 0.00 0.00 1.40
593 614 4.809958 TGAAAACGAATACAGAAACCACGA 59.190 37.500 0.00 0.00 0.00 4.35
596 617 6.540914 AGAAGTGAAAACGAATACAGAAACCA 59.459 34.615 0.00 0.00 0.00 3.67
692 715 6.487299 AGATAGAGGGACACTGGTATTTTC 57.513 41.667 0.00 0.00 0.00 2.29
693 716 7.235812 GGATAGATAGAGGGACACTGGTATTTT 59.764 40.741 0.00 0.00 0.00 1.82
694 717 6.726764 GGATAGATAGAGGGACACTGGTATTT 59.273 42.308 0.00 0.00 0.00 1.40
695 718 6.183361 TGGATAGATAGAGGGACACTGGTATT 60.183 42.308 0.00 0.00 0.00 1.89
696 719 5.316183 TGGATAGATAGAGGGACACTGGTAT 59.684 44.000 0.00 0.00 0.00 2.73
697 720 4.668335 TGGATAGATAGAGGGACACTGGTA 59.332 45.833 0.00 0.00 0.00 3.25
698 721 3.467483 TGGATAGATAGAGGGACACTGGT 59.533 47.826 0.00 0.00 0.00 4.00
699 722 4.119556 TGGATAGATAGAGGGACACTGG 57.880 50.000 0.00 0.00 0.00 4.00
700 723 4.282195 GGTTGGATAGATAGAGGGACACTG 59.718 50.000 0.00 0.00 0.00 3.66
701 724 4.078571 TGGTTGGATAGATAGAGGGACACT 60.079 45.833 0.00 0.00 0.00 3.55
702 725 4.223953 TGGTTGGATAGATAGAGGGACAC 58.776 47.826 0.00 0.00 0.00 3.67
703 726 4.483950 CTGGTTGGATAGATAGAGGGACA 58.516 47.826 0.00 0.00 0.00 4.02
704 727 3.259625 GCTGGTTGGATAGATAGAGGGAC 59.740 52.174 0.00 0.00 0.00 4.46
705 728 3.142977 AGCTGGTTGGATAGATAGAGGGA 59.857 47.826 0.00 0.00 0.00 4.20
706 729 3.513515 GAGCTGGTTGGATAGATAGAGGG 59.486 52.174 0.00 0.00 0.00 4.30
707 730 4.220382 CAGAGCTGGTTGGATAGATAGAGG 59.780 50.000 0.00 0.00 0.00 3.69
708 731 5.048083 GTCAGAGCTGGTTGGATAGATAGAG 60.048 48.000 0.00 0.00 0.00 2.43
709 732 4.830046 GTCAGAGCTGGTTGGATAGATAGA 59.170 45.833 0.00 0.00 0.00 1.98
710 733 4.021544 GGTCAGAGCTGGTTGGATAGATAG 60.022 50.000 0.00 0.00 0.00 2.08
711 734 3.898123 GGTCAGAGCTGGTTGGATAGATA 59.102 47.826 0.00 0.00 0.00 1.98
712 735 2.703007 GGTCAGAGCTGGTTGGATAGAT 59.297 50.000 0.00 0.00 0.00 1.98
713 736 2.111384 GGTCAGAGCTGGTTGGATAGA 58.889 52.381 0.00 0.00 0.00 1.98
714 737 2.102252 GAGGTCAGAGCTGGTTGGATAG 59.898 54.545 6.92 0.00 0.00 2.08
715 738 2.111384 GAGGTCAGAGCTGGTTGGATA 58.889 52.381 6.92 0.00 0.00 2.59
716 739 0.908198 GAGGTCAGAGCTGGTTGGAT 59.092 55.000 6.92 0.00 0.00 3.41
717 740 0.178921 AGAGGTCAGAGCTGGTTGGA 60.179 55.000 6.92 0.00 0.00 3.53
718 741 0.689623 AAGAGGTCAGAGCTGGTTGG 59.310 55.000 6.92 0.00 0.00 3.77
719 742 1.071385 ACAAGAGGTCAGAGCTGGTTG 59.929 52.381 6.92 12.46 0.00 3.77
720 743 1.428869 ACAAGAGGTCAGAGCTGGTT 58.571 50.000 6.92 0.00 0.00 3.67
721 744 1.428869 AACAAGAGGTCAGAGCTGGT 58.571 50.000 6.92 0.00 0.00 4.00
722 745 2.557920 AAACAAGAGGTCAGAGCTGG 57.442 50.000 6.92 0.00 0.00 4.85
723 746 3.470709 TGAAAACAAGAGGTCAGAGCTG 58.529 45.455 6.92 0.00 0.00 4.24
724 747 3.135530 ACTGAAAACAAGAGGTCAGAGCT 59.864 43.478 0.40 0.40 39.94 4.09
725 748 3.471680 ACTGAAAACAAGAGGTCAGAGC 58.528 45.455 6.53 0.00 39.94 4.09
726 749 4.061596 GGACTGAAAACAAGAGGTCAGAG 58.938 47.826 6.53 0.00 39.94 3.35
727 750 3.454447 TGGACTGAAAACAAGAGGTCAGA 59.546 43.478 6.53 0.00 39.94 3.27
734 757 5.362717 TGAGACTAGTGGACTGAAAACAAGA 59.637 40.000 0.00 0.00 0.00 3.02
735 758 5.601662 TGAGACTAGTGGACTGAAAACAAG 58.398 41.667 0.00 0.00 0.00 3.16
752 775 1.600916 GCGGGGCTGTTTTGAGACT 60.601 57.895 0.00 0.00 0.00 3.24
761 784 0.037590 TAATTCTGTTGCGGGGCTGT 59.962 50.000 0.00 0.00 0.00 4.40
772 795 7.391620 TGTCTTTTCGGGAGTAATAATTCTGT 58.608 34.615 0.00 0.00 0.00 3.41
782 805 2.561419 CTGACCTGTCTTTTCGGGAGTA 59.439 50.000 0.00 0.00 37.31 2.59
817 840 3.876320 ACGTAAACTCTTACCCGCAAAAA 59.124 39.130 0.00 0.00 34.97 1.94
818 841 3.465871 ACGTAAACTCTTACCCGCAAAA 58.534 40.909 0.00 0.00 34.97 2.44
819 842 3.110447 ACGTAAACTCTTACCCGCAAA 57.890 42.857 0.00 0.00 34.97 3.68
820 843 2.818130 ACGTAAACTCTTACCCGCAA 57.182 45.000 0.00 0.00 34.97 4.85
821 844 2.818130 AACGTAAACTCTTACCCGCA 57.182 45.000 0.00 0.00 34.97 5.69
822 845 3.742882 AGAAAACGTAAACTCTTACCCGC 59.257 43.478 0.00 0.00 34.97 6.13
823 846 4.376717 GCAGAAAACGTAAACTCTTACCCG 60.377 45.833 0.00 0.00 34.97 5.28
824 847 4.512571 TGCAGAAAACGTAAACTCTTACCC 59.487 41.667 0.00 0.00 34.97 3.69
828 851 3.001939 CGGTGCAGAAAACGTAAACTCTT 59.998 43.478 0.00 0.00 0.00 2.85
865 888 4.389992 TCTCGACAATCGTAAACGTCTACT 59.610 41.667 2.02 0.00 41.35 2.57
897 921 2.544267 GGGCTCTGATGTGTAAATACGC 59.456 50.000 0.00 0.00 37.23 4.42
899 923 4.150897 TGGGGCTCTGATGTGTAAATAC 57.849 45.455 0.00 0.00 0.00 1.89
900 924 4.853468 TTGGGGCTCTGATGTGTAAATA 57.147 40.909 0.00 0.00 0.00 1.40
987 1012 4.778143 GACATCCCTTGCGGCGGT 62.778 66.667 9.78 0.00 0.00 5.68
1038 1069 1.749638 GAAGAGACGCGGGAGGAGA 60.750 63.158 12.47 0.00 0.00 3.71
1050 1081 3.452786 CGCTGGCCGAGGAAGAGA 61.453 66.667 0.00 0.00 40.02 3.10
1207 1238 1.134965 CGTGGCTGAGGTTTAGAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
1251 1282 5.237815 TGAACAGCGAAGAGAACATGTAAT 58.762 37.500 0.00 0.00 0.00 1.89
1341 1373 3.240134 GAGTGGAGGAAGCACGGCA 62.240 63.158 0.00 0.00 0.00 5.69
1743 1785 6.206395 TGTCGCAAATCCAATCAAATACAT 57.794 33.333 0.00 0.00 0.00 2.29
1807 1849 6.683974 AAATTAGCAACTAGGCATACACTG 57.316 37.500 0.00 0.00 35.83 3.66
1886 1928 3.626670 CAGGAATGAATCTCTTGCACCTC 59.373 47.826 0.00 0.00 0.00 3.85
1902 1944 5.244402 TGATGCTTCAAATGTGTTCAGGAAT 59.756 36.000 0.00 0.00 0.00 3.01
1953 1995 4.456280 AACAGCGATGACATTCACTAGA 57.544 40.909 8.12 0.00 0.00 2.43
2148 2191 2.489722 GCTGCAAAGGAGAAAACTAGGG 59.510 50.000 0.00 0.00 0.00 3.53
2546 2600 7.993183 TGAGAATTATTTGTTACCATCCCTCTC 59.007 37.037 0.00 0.00 0.00 3.20
2598 2656 5.869888 TGTGCCAACAAGTAAAAACGAAAAT 59.130 32.000 0.00 0.00 31.82 1.82
2691 2779 4.080299 AGGGGATGGTAGCAAGTAGAAAAG 60.080 45.833 0.00 0.00 0.00 2.27
2872 2960 4.150627 GCATCTACACACAAGTACACACAG 59.849 45.833 0.00 0.00 0.00 3.66
2877 2965 5.304778 ACATTGCATCTACACACAAGTACA 58.695 37.500 0.00 0.00 0.00 2.90
2878 2966 5.862924 ACATTGCATCTACACACAAGTAC 57.137 39.130 0.00 0.00 0.00 2.73
2884 2972 4.216257 AGGTCAAACATTGCATCTACACAC 59.784 41.667 0.00 0.00 0.00 3.82
2919 3007 2.290641 ACAGGTCAAACATTATCCCGCA 60.291 45.455 0.00 0.00 0.00 5.69
3019 3116 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
3020 3117 3.573110 CCTATAAACCAGGACGGAGGTAG 59.427 52.174 0.00 0.00 37.07 3.18
3021 3118 3.052642 ACCTATAAACCAGGACGGAGGTA 60.053 47.826 0.00 0.00 35.66 3.08
3022 3119 2.292719 ACCTATAAACCAGGACGGAGGT 60.293 50.000 0.00 0.00 40.61 3.85
3023 3120 2.364647 GACCTATAAACCAGGACGGAGG 59.635 54.545 0.00 0.00 38.63 4.30
3024 3121 2.364647 GGACCTATAAACCAGGACGGAG 59.635 54.545 0.00 0.00 38.63 4.63
3025 3122 2.391678 GGACCTATAAACCAGGACGGA 58.608 52.381 0.00 0.00 38.63 4.69
3026 3123 1.415289 GGGACCTATAAACCAGGACGG 59.585 57.143 0.00 0.00 42.50 4.79
3027 3124 2.904697 GGGACCTATAAACCAGGACG 57.095 55.000 0.00 0.00 36.61 4.79
3042 3139 6.453926 TTTAACACAAACTACAAAGGGGAC 57.546 37.500 0.00 0.00 0.00 4.46
3043 3140 7.663043 AATTTAACACAAACTACAAAGGGGA 57.337 32.000 0.00 0.00 0.00 4.81
3044 3141 8.608317 CAAAATTTAACACAAACTACAAAGGGG 58.392 33.333 0.00 0.00 0.00 4.79
3045 3142 9.372369 TCAAAATTTAACACAAACTACAAAGGG 57.628 29.630 0.00 0.00 0.00 3.95
3082 3179 9.979578 TTGACATGCATTAACATTTTCTTAGTT 57.020 25.926 0.00 0.00 0.00 2.24
3083 3180 9.630098 CTTGACATGCATTAACATTTTCTTAGT 57.370 29.630 0.00 0.00 0.00 2.24
3084 3181 9.079833 CCTTGACATGCATTAACATTTTCTTAG 57.920 33.333 0.00 0.00 0.00 2.18
3085 3182 8.801299 TCCTTGACATGCATTAACATTTTCTTA 58.199 29.630 0.00 0.00 0.00 2.10
3086 3183 7.669427 TCCTTGACATGCATTAACATTTTCTT 58.331 30.769 0.00 0.00 0.00 2.52
3087 3184 7.230849 TCCTTGACATGCATTAACATTTTCT 57.769 32.000 0.00 0.00 0.00 2.52
3088 3185 7.887996 TTCCTTGACATGCATTAACATTTTC 57.112 32.000 0.00 0.00 0.00 2.29
3089 3186 8.674263 TTTTCCTTGACATGCATTAACATTTT 57.326 26.923 0.00 0.00 0.00 1.82
3090 3187 8.851541 ATTTTCCTTGACATGCATTAACATTT 57.148 26.923 0.00 0.00 0.00 2.32
3091 3188 8.851541 AATTTTCCTTGACATGCATTAACATT 57.148 26.923 0.00 0.00 0.00 2.71
3093 3190 9.585099 GATAATTTTCCTTGACATGCATTAACA 57.415 29.630 0.00 0.00 0.00 2.41
3094 3191 9.807649 AGATAATTTTCCTTGACATGCATTAAC 57.192 29.630 0.00 0.00 0.00 2.01
3096 3193 9.187996 TGAGATAATTTTCCTTGACATGCATTA 57.812 29.630 0.00 0.00 0.00 1.90
3097 3194 8.070034 TGAGATAATTTTCCTTGACATGCATT 57.930 30.769 0.00 0.00 0.00 3.56
3098 3195 7.649533 TGAGATAATTTTCCTTGACATGCAT 57.350 32.000 0.00 0.00 0.00 3.96
3099 3196 7.649533 ATGAGATAATTTTCCTTGACATGCA 57.350 32.000 0.00 0.00 0.00 3.96
3100 3197 8.192774 TCAATGAGATAATTTTCCTTGACATGC 58.807 33.333 0.00 0.00 0.00 4.06
3106 3203 9.793252 ACGAATTCAATGAGATAATTTTCCTTG 57.207 29.630 6.22 0.00 0.00 3.61
3148 3245 9.149225 GCATGTCACCAAACATTATATTTTTGA 57.851 29.630 0.00 0.00 37.78 2.69
3149 3246 8.109391 CGCATGTCACCAAACATTATATTTTTG 58.891 33.333 0.00 0.00 37.78 2.44
3150 3247 7.816995 ACGCATGTCACCAAACATTATATTTTT 59.183 29.630 0.00 0.00 37.78 1.94
3151 3248 7.275341 CACGCATGTCACCAAACATTATATTTT 59.725 33.333 0.00 0.00 37.78 1.82
3152 3249 6.751425 CACGCATGTCACCAAACATTATATTT 59.249 34.615 0.00 0.00 37.78 1.40
3153 3250 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
3154 3251 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
3155 3252 4.938226 TCACGCATGTCACCAAACATTATA 59.062 37.500 0.00 0.00 37.78 0.98
3156 3253 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
3157 3254 3.142174 TCACGCATGTCACCAAACATTA 58.858 40.909 0.00 0.00 37.78 1.90
3158 3255 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
3159 3256 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
3160 3257 1.064803 GTTCACGCATGTCACCAAACA 59.935 47.619 0.00 0.00 0.00 2.83
3161 3258 1.064803 TGTTCACGCATGTCACCAAAC 59.935 47.619 0.00 0.00 0.00 2.93
3162 3259 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
3163 3260 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
3164 3261 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
3165 3262 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
3166 3263 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
3167 3264 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
3168 3265 5.212194 ACTAACAAAATGTTCACGCATGTC 58.788 37.500 0.00 0.00 40.22 3.06
3169 3266 5.181690 ACTAACAAAATGTTCACGCATGT 57.818 34.783 0.00 0.00 40.22 3.21
3170 3267 6.509317 AAACTAACAAAATGTTCACGCATG 57.491 33.333 0.00 0.00 40.22 4.06
3171 3268 8.810652 ATTAAACTAACAAAATGTTCACGCAT 57.189 26.923 0.00 0.00 40.22 4.73
3172 3269 8.132362 AGATTAAACTAACAAAATGTTCACGCA 58.868 29.630 0.00 0.00 40.22 5.24
3173 3270 8.502161 AGATTAAACTAACAAAATGTTCACGC 57.498 30.769 0.00 0.00 40.22 5.34
3189 3286 8.592809 TGCCAAATTTTGACCATAGATTAAACT 58.407 29.630 10.72 0.00 0.00 2.66
3190 3287 8.655970 GTGCCAAATTTTGACCATAGATTAAAC 58.344 33.333 10.72 0.00 0.00 2.01
3191 3288 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
3192 3289 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
3193 3290 6.405286 CCGTGCCAAATTTTGACCATAGATTA 60.405 38.462 10.72 0.00 0.00 1.75
3194 3291 5.410067 CGTGCCAAATTTTGACCATAGATT 58.590 37.500 10.72 0.00 0.00 2.40
3195 3292 4.142182 CCGTGCCAAATTTTGACCATAGAT 60.142 41.667 10.72 0.00 0.00 1.98
3196 3293 3.192422 CCGTGCCAAATTTTGACCATAGA 59.808 43.478 10.72 0.00 0.00 1.98
3197 3294 3.192422 TCCGTGCCAAATTTTGACCATAG 59.808 43.478 10.72 6.14 0.00 2.23
3198 3295 3.157881 TCCGTGCCAAATTTTGACCATA 58.842 40.909 10.72 0.00 0.00 2.74
3199 3296 1.967066 TCCGTGCCAAATTTTGACCAT 59.033 42.857 10.72 0.00 0.00 3.55
3200 3297 1.403814 TCCGTGCCAAATTTTGACCA 58.596 45.000 10.72 4.80 0.00 4.02
3201 3298 2.517650 TTCCGTGCCAAATTTTGACC 57.482 45.000 10.72 2.35 0.00 4.02
3202 3299 4.551388 TGTATTCCGTGCCAAATTTTGAC 58.449 39.130 10.72 0.00 0.00 3.18
3203 3300 4.855715 TGTATTCCGTGCCAAATTTTGA 57.144 36.364 10.72 0.00 0.00 2.69
3204 3301 5.163874 CCATTGTATTCCGTGCCAAATTTTG 60.164 40.000 1.99 1.99 0.00 2.44
3205 3302 4.934602 CCATTGTATTCCGTGCCAAATTTT 59.065 37.500 0.00 0.00 0.00 1.82
3206 3303 4.502962 CCATTGTATTCCGTGCCAAATTT 58.497 39.130 0.00 0.00 0.00 1.82
3207 3304 3.118811 CCCATTGTATTCCGTGCCAAATT 60.119 43.478 0.00 0.00 0.00 1.82
3208 3305 2.430332 CCCATTGTATTCCGTGCCAAAT 59.570 45.455 0.00 0.00 0.00 2.32
3209 3306 1.821753 CCCATTGTATTCCGTGCCAAA 59.178 47.619 0.00 0.00 0.00 3.28
3210 3307 1.468985 CCCATTGTATTCCGTGCCAA 58.531 50.000 0.00 0.00 0.00 4.52
3211 3308 0.395036 CCCCATTGTATTCCGTGCCA 60.395 55.000 0.00 0.00 0.00 4.92
3212 3309 0.106918 TCCCCATTGTATTCCGTGCC 60.107 55.000 0.00 0.00 0.00 5.01
3213 3310 1.021968 GTCCCCATTGTATTCCGTGC 58.978 55.000 0.00 0.00 0.00 5.34
3214 3311 1.065053 TGGTCCCCATTGTATTCCGTG 60.065 52.381 0.00 0.00 0.00 4.94
3215 3312 1.291109 TGGTCCCCATTGTATTCCGT 58.709 50.000 0.00 0.00 0.00 4.69
3216 3313 2.428544 TTGGTCCCCATTGTATTCCG 57.571 50.000 0.00 0.00 31.53 4.30
3217 3314 5.069914 GGTTTATTGGTCCCCATTGTATTCC 59.930 44.000 0.00 0.00 31.53 3.01
3218 3315 5.069914 GGGTTTATTGGTCCCCATTGTATTC 59.930 44.000 0.00 0.00 37.09 1.75
3219 3316 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
3220 3317 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
3221 3318 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
3222 3319 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
3223 3320 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
3224 3321 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
3225 3322 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
3226 3323 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
3227 3324 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
3228 3325 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
3229 3326 0.745486 CCGTCCGGGTTTATTGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
3230 3327 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
3231 3328 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
3232 3329 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
3233 3330 0.251073 ACCTCCGTCCGGGTTTATTG 59.749 55.000 0.00 0.00 37.00 1.90
3234 3331 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
3235 3332 1.406903 CTACCTCCGTCCGGGTTTAT 58.593 55.000 0.00 0.00 37.07 1.40
3236 3333 1.322538 GCTACCTCCGTCCGGGTTTA 61.323 60.000 0.00 0.00 37.07 2.01
3237 3334 2.653087 GCTACCTCCGTCCGGGTTT 61.653 63.158 0.00 0.00 37.07 3.27
3238 3335 3.073101 GCTACCTCCGTCCGGGTT 61.073 66.667 0.00 0.00 37.07 4.11
3239 3336 4.371417 TGCTACCTCCGTCCGGGT 62.371 66.667 0.00 0.00 39.40 5.28
3240 3337 3.834799 GTGCTACCTCCGTCCGGG 61.835 72.222 0.00 0.00 35.59 5.73
3241 3338 4.189188 CGTGCTACCTCCGTCCGG 62.189 72.222 0.00 0.00 0.00 5.14
3242 3339 3.437795 ACGTGCTACCTCCGTCCG 61.438 66.667 0.00 0.00 0.00 4.79
3243 3340 2.181021 CACGTGCTACCTCCGTCC 59.819 66.667 0.82 0.00 31.46 4.79
3244 3341 2.506438 GCACGTGCTACCTCCGTC 60.506 66.667 32.55 0.00 38.21 4.79
3254 3351 3.130633 TCAACATGGATATAGCACGTGC 58.869 45.455 32.79 32.79 42.49 5.34
3255 3352 4.990426 TGATCAACATGGATATAGCACGTG 59.010 41.667 12.28 12.28 0.00 4.49
3290 3387 5.871396 AGTAAAGGGATCAGCTCGAAATA 57.129 39.130 0.00 0.00 0.00 1.40
3365 3462 0.436531 CGACTGCAAACGAAGAGAGC 59.563 55.000 6.37 0.00 0.00 4.09
3488 3588 2.562298 TGTCAAATGATGTGCCTTTCCC 59.438 45.455 0.00 0.00 0.00 3.97
3505 3605 5.877012 GCTCTGAGGAATAATGAACTTGTCA 59.123 40.000 6.83 0.00 41.67 3.58
3508 3608 6.111382 TGAGCTCTGAGGAATAATGAACTTG 58.889 40.000 16.19 0.00 0.00 3.16
3514 3614 4.449131 TGCTTGAGCTCTGAGGAATAATG 58.551 43.478 16.19 0.00 42.66 1.90
3520 3620 0.107800 GCATGCTTGAGCTCTGAGGA 60.108 55.000 16.19 14.09 42.66 3.71
3521 3621 0.392595 TGCATGCTTGAGCTCTGAGG 60.393 55.000 20.33 3.55 42.66 3.86
3522 3622 1.669604 ATGCATGCTTGAGCTCTGAG 58.330 50.000 20.33 13.61 42.66 3.35
3560 3663 6.202331 TCCTCATAATGGTGTCTTAGAAGGA 58.798 40.000 0.00 0.00 0.00 3.36
3583 3686 4.509600 GTCTACCATAAAGTCAGCATGCTC 59.490 45.833 19.68 7.90 34.76 4.26
3623 3728 1.500108 GGAGAGCATTCGCAGATCAG 58.500 55.000 0.00 0.00 42.27 2.90
3629 3734 1.552799 TTGGAGGGAGAGCATTCGCA 61.553 55.000 7.17 0.00 42.27 5.10
3631 3736 1.945394 CATTTGGAGGGAGAGCATTCG 59.055 52.381 0.00 0.00 0.00 3.34
3633 3738 1.925255 TCCATTTGGAGGGAGAGCATT 59.075 47.619 0.00 0.00 39.78 3.56
3654 3759 2.118313 TCGTCGTCTTCCAGTGGATA 57.882 50.000 14.00 1.12 0.00 2.59
3681 3786 4.487714 AGATTAATCCTTCCGTGCTTCA 57.512 40.909 11.92 0.00 0.00 3.02
3688 3793 3.646637 AGGGTGGTAGATTAATCCTTCCG 59.353 47.826 11.92 0.00 0.00 4.30
3690 3795 5.130477 TGTCAGGGTGGTAGATTAATCCTTC 59.870 44.000 11.92 3.17 0.00 3.46
3762 3867 5.885881 ACATCTGCGACTTTTTGTTACAAA 58.114 33.333 6.41 6.41 0.00 2.83
3763 3868 5.493133 ACATCTGCGACTTTTTGTTACAA 57.507 34.783 0.00 0.00 0.00 2.41
3811 3916 2.418368 TACCATAAACAGGGCAGCAG 57.582 50.000 0.00 0.00 0.00 4.24
3889 3994 2.215451 ATTTGCCCAGGCGACATCCT 62.215 55.000 3.83 0.00 45.51 3.24
3890 3995 1.754234 ATTTGCCCAGGCGACATCC 60.754 57.895 3.83 0.00 45.51 3.51
3891 3996 1.315257 ACATTTGCCCAGGCGACATC 61.315 55.000 3.83 0.00 45.51 3.06
3892 3997 0.034574 TACATTTGCCCAGGCGACAT 60.035 50.000 3.83 0.00 45.51 3.06
3893 3998 0.034574 ATACATTTGCCCAGGCGACA 60.035 50.000 3.83 0.00 45.51 4.35
3894 3999 1.961793 TATACATTTGCCCAGGCGAC 58.038 50.000 3.83 0.00 45.51 5.19
3895 4000 2.719531 TTATACATTTGCCCAGGCGA 57.280 45.000 3.83 0.00 45.51 5.54
3896 4001 4.072131 AGTATTATACATTTGCCCAGGCG 58.928 43.478 3.83 0.00 45.51 5.52
3897 4002 4.321230 GCAGTATTATACATTTGCCCAGGC 60.321 45.833 0.38 0.38 42.35 4.85
3898 4003 4.826733 TGCAGTATTATACATTTGCCCAGG 59.173 41.667 10.98 0.00 29.37 4.45
3899 4004 6.262944 TCTTGCAGTATTATACATTTGCCCAG 59.737 38.462 10.98 8.08 29.37 4.45
3900 4005 6.125719 TCTTGCAGTATTATACATTTGCCCA 58.874 36.000 10.98 0.65 29.37 5.36
3904 4009 9.390795 GCTCAATCTTGCAGTATTATACATTTG 57.609 33.333 5.11 0.00 0.00 2.32
3981 4086 1.347707 ACGGGAAGAGTCATTCAAGCA 59.652 47.619 0.00 0.00 0.00 3.91
4018 4123 4.573607 AGTTTCTCTCAACCGTGTTTAACC 59.426 41.667 0.00 0.00 0.00 2.85
4218 4327 1.140589 CAGTAGTCTGGGCTCTGCG 59.859 63.158 0.00 0.00 37.97 5.18
4225 4334 1.475403 ATGGTCGTCAGTAGTCTGGG 58.525 55.000 0.00 0.00 41.59 4.45
4233 4342 5.142061 TGTATGTTGTAATGGTCGTCAGT 57.858 39.130 0.00 0.00 0.00 3.41
4250 4359 2.682352 TCCCGTGATTGTTGCATGTATG 59.318 45.455 0.00 0.00 0.00 2.39
4251 4360 2.682856 GTCCCGTGATTGTTGCATGTAT 59.317 45.455 0.00 0.00 0.00 2.29
4252 4361 2.080693 GTCCCGTGATTGTTGCATGTA 58.919 47.619 0.00 0.00 0.00 2.29
4308 4417 8.547894 GTCGTACACAAATTGATGCATAGATAA 58.452 33.333 0.00 0.00 0.00 1.75
4312 4421 6.187480 CAGTCGTACACAAATTGATGCATAG 58.813 40.000 0.00 0.00 0.00 2.23
4315 4432 3.364864 GCAGTCGTACACAAATTGATGCA 60.365 43.478 0.00 0.00 0.00 3.96
4319 4436 2.473609 GTCGCAGTCGTACACAAATTGA 59.526 45.455 0.00 0.00 36.96 2.57
4320 4437 2.475111 AGTCGCAGTCGTACACAAATTG 59.525 45.455 0.00 0.00 36.96 2.32
4328 4445 0.167470 TGCAGTAGTCGCAGTCGTAC 59.833 55.000 0.00 0.00 33.55 3.67
4332 4449 2.065993 TCTTTGCAGTAGTCGCAGTC 57.934 50.000 0.00 0.00 41.18 3.51
4333 4450 2.408050 CTTCTTTGCAGTAGTCGCAGT 58.592 47.619 0.00 0.00 41.18 4.40
4336 4453 2.080286 TCCTTCTTTGCAGTAGTCGC 57.920 50.000 0.00 0.00 0.00 5.19
4338 4455 4.207891 TGGATCCTTCTTTGCAGTAGTC 57.792 45.455 14.23 0.00 0.00 2.59
4340 4457 6.129053 GATTTGGATCCTTCTTTGCAGTAG 57.871 41.667 14.23 0.00 0.00 2.57
4459 4584 2.105134 TGAGGCTAGGAAACAAAACCGA 59.895 45.455 0.00 0.00 0.00 4.69
4502 4627 0.585357 GATGCTCGCCATTGTAGCTG 59.415 55.000 0.00 0.00 37.16 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.