Multiple sequence alignment - TraesCS7B01G101500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G101500 chr7B 100.000 3101 0 0 1 3101 115562105 115559005 0.000000e+00 5727
1 TraesCS7B01G101500 chr7B 84.545 110 12 2 1735 1839 619071990 619072099 1.520000e-18 104
2 TraesCS7B01G101500 chr7A 90.161 2866 130 61 9 2797 155647640 155644850 0.000000e+00 3591
3 TraesCS7B01G101500 chr7D 93.407 1987 71 22 836 2796 153774124 153772172 0.000000e+00 2889
4 TraesCS7B01G101500 chr7D 93.732 351 21 1 1 351 153774838 153774489 2.740000e-145 525
5 TraesCS7B01G101500 chr7D 95.177 311 12 3 2791 3101 64258839 64259146 3.590000e-134 488
6 TraesCS7B01G101500 chr7D 95.364 302 12 2 405 704 153774482 153774181 2.160000e-131 479
7 TraesCS7B01G101500 chr6B 80.339 885 129 30 1133 1984 599685658 599686530 2.030000e-176 628
8 TraesCS7B01G101500 chr6D 80.000 875 141 22 1133 1984 400648390 400649253 1.580000e-172 616
9 TraesCS7B01G101500 chr6A 79.256 887 141 24 1133 1984 546596371 546597249 2.070000e-161 579
10 TraesCS7B01G101500 chr3D 95.498 311 12 2 2791 3101 123568843 123568535 2.150000e-136 496
11 TraesCS7B01G101500 chr3A 93.248 311 19 2 2791 3101 565789776 565790084 1.010000e-124 457
12 TraesCS7B01G101500 chr5A 91.640 311 24 2 2791 3101 653383201 653383509 2.210000e-116 429
13 TraesCS7B01G101500 chr5D 79.263 217 30 6 1299 1502 247346648 247346862 1.500000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G101500 chr7B 115559005 115562105 3100 True 5727.000000 5727 100.000000 1 3101 1 chr7B.!!$R1 3100
1 TraesCS7B01G101500 chr7A 155644850 155647640 2790 True 3591.000000 3591 90.161000 9 2797 1 chr7A.!!$R1 2788
2 TraesCS7B01G101500 chr7D 153772172 153774838 2666 True 1297.666667 2889 94.167667 1 2796 3 chr7D.!!$R1 2795
3 TraesCS7B01G101500 chr6B 599685658 599686530 872 False 628.000000 628 80.339000 1133 1984 1 chr6B.!!$F1 851
4 TraesCS7B01G101500 chr6D 400648390 400649253 863 False 616.000000 616 80.000000 1133 1984 1 chr6D.!!$F1 851
5 TraesCS7B01G101500 chr6A 546596371 546597249 878 False 579.000000 579 79.256000 1133 1984 1 chr6A.!!$F1 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 854 0.031585 ACGACTGCGACTACTGCAAA 59.968 50.0 0.0 0.0 42.7 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2644 1.202582 GAGTGGCACGACATAGTCAGT 59.797 52.381 12.71 0.0 32.09 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.202441 GCATTTCATGTCATCCAGGTACT 58.798 43.478 0.00 0.00 43.88 2.73
73 74 6.098982 ACTCCTTCTAAGACACCATTATGAGG 59.901 42.308 0.00 0.00 0.00 3.86
113 116 5.048782 TGGTAGACACACAATGATCAAAAGC 60.049 40.000 0.00 0.00 0.00 3.51
144 147 1.600058 TGCTCTCCCTCCAAATGGAT 58.400 50.000 1.93 0.00 44.46 3.41
171 174 3.243771 ACTGGAAGACGACGATTGTTCTT 60.244 43.478 0.00 0.00 37.43 2.52
178 181 2.221055 ACGACGATTGTTCTTGAAGCAC 59.779 45.455 0.00 0.00 0.00 4.40
180 183 1.531149 ACGATTGTTCTTGAAGCACGG 59.469 47.619 0.00 0.00 0.00 4.94
252 255 3.009473 ACTGGTGCTTCACTCCATGTATT 59.991 43.478 0.00 0.00 41.03 1.89
253 256 4.012374 CTGGTGCTTCACTCCATGTATTT 58.988 43.478 0.00 0.00 41.03 1.40
280 283 3.243068 ACAAAAAGTCGCAGATGTTCCAC 60.243 43.478 0.00 0.00 40.67 4.02
301 304 6.204301 TCCACTAGAGAATACTACGTACATGC 59.796 42.308 0.00 0.00 0.00 4.06
351 354 6.019479 GTCGGCATTTCTTATGTAGAACAGAG 60.019 42.308 0.00 0.00 42.50 3.35
353 356 6.535150 CGGCATTTCTTATGTAGAACAGAGAA 59.465 38.462 5.18 5.18 42.50 2.87
354 357 7.254252 CGGCATTTCTTATGTAGAACAGAGAAG 60.254 40.741 7.99 2.61 42.50 2.85
355 358 7.405769 GCATTTCTTATGTAGAACAGAGAAGC 58.594 38.462 7.99 6.60 42.50 3.86
357 360 8.602328 CATTTCTTATGTAGAACAGAGAAGCAG 58.398 37.037 7.99 2.26 42.50 4.24
358 361 7.468141 TTCTTATGTAGAACAGAGAAGCAGA 57.532 36.000 5.18 0.00 37.96 4.26
360 363 4.734398 ATGTAGAACAGAGAAGCAGAGG 57.266 45.455 0.00 0.00 0.00 3.69
362 365 3.898123 TGTAGAACAGAGAAGCAGAGGTT 59.102 43.478 0.00 0.00 0.00 3.50
366 369 2.324541 ACAGAGAAGCAGAGGTTGTCT 58.675 47.619 3.19 3.19 42.77 3.41
367 370 2.298729 ACAGAGAAGCAGAGGTTGTCTC 59.701 50.000 5.75 0.00 40.69 3.36
382 385 2.666317 TGTCTCTGAACAGACACAGGA 58.334 47.619 8.40 0.00 46.43 3.86
383 386 3.234353 TGTCTCTGAACAGACACAGGAT 58.766 45.455 8.40 0.00 46.43 3.24
384 387 3.006217 TGTCTCTGAACAGACACAGGATG 59.994 47.826 8.40 0.00 46.43 3.51
385 388 5.477496 TGTCTCTGAACAGACACAGGATGT 61.477 45.833 8.40 0.00 46.43 3.06
471 474 9.220767 GACTTAGAAATAAGTTGTCCTTGTCAT 57.779 33.333 2.44 0.00 40.09 3.06
508 511 1.070175 CCGTTGGTTTCTTGCTACGTG 60.070 52.381 0.00 0.00 0.00 4.49
708 715 1.205893 CTACCTTCCCACAGAGCAGAC 59.794 57.143 0.00 0.00 0.00 3.51
715 722 2.093473 CACAGAGCAGACGCAGAGC 61.093 63.158 0.00 0.00 42.27 4.09
723 730 1.000771 AGACGCAGAGCCCAGACTA 60.001 57.895 0.00 0.00 0.00 2.59
740 747 4.857588 CAGACTACTGACGACCATTACAAC 59.142 45.833 0.00 0.00 46.03 3.32
741 748 4.521639 AGACTACTGACGACCATTACAACA 59.478 41.667 0.00 0.00 0.00 3.33
742 749 5.185249 AGACTACTGACGACCATTACAACAT 59.815 40.000 0.00 0.00 0.00 2.71
809 824 8.792830 AACGGCAAGTTATATTATCTATGCAT 57.207 30.769 3.79 3.79 42.14 3.96
810 825 8.425577 ACGGCAAGTTATATTATCTATGCATC 57.574 34.615 0.19 0.00 34.37 3.91
823 838 8.655651 TTATCTATGCATCAATTTGTGTACGA 57.344 30.769 0.19 0.00 0.00 3.43
826 841 4.403015 TGCATCAATTTGTGTACGACTG 57.597 40.909 0.00 0.00 0.00 3.51
828 843 3.407252 CATCAATTTGTGTACGACTGCG 58.593 45.455 0.00 0.00 44.79 5.18
830 845 2.473609 TCAATTTGTGTACGACTGCGAC 59.526 45.455 0.00 0.00 41.64 5.19
831 846 2.433868 ATTTGTGTACGACTGCGACT 57.566 45.000 0.00 0.00 41.64 4.18
832 847 3.564235 ATTTGTGTACGACTGCGACTA 57.436 42.857 0.00 0.00 41.64 2.59
833 848 2.320805 TTGTGTACGACTGCGACTAC 57.679 50.000 0.00 0.00 41.64 2.73
834 849 1.516161 TGTGTACGACTGCGACTACT 58.484 50.000 0.00 0.00 41.64 2.57
839 854 0.031585 ACGACTGCGACTACTGCAAA 59.968 50.000 0.00 0.00 42.70 3.68
949 972 3.194116 TCGTCAAGCTTTATAACCCGAGT 59.806 43.478 0.00 0.00 0.00 4.18
992 1015 1.097547 CATCCACCCATCTTGCCGAC 61.098 60.000 0.00 0.00 0.00 4.79
1137 1172 4.641645 CCGCTGCTGTCCAACCCA 62.642 66.667 0.00 0.00 0.00 4.51
1305 1346 1.443407 CATCCGGACCTACCAGCAG 59.557 63.158 6.12 0.00 38.90 4.24
1322 1363 1.536662 AGAACTTCGGCCTGGAGGT 60.537 57.895 0.00 0.00 37.57 3.85
1326 1367 3.316573 CTTCGGCCTGGAGGTCACC 62.317 68.421 0.00 0.00 40.62 4.02
1371 1412 1.889105 CAAGATGATGTCCCCGCGG 60.889 63.158 21.04 21.04 0.00 6.46
2007 2075 2.601666 ACCAGCAGCGAGGAGACA 60.602 61.111 13.25 0.00 0.00 3.41
2115 2186 1.480954 TGCTAGTTCTTGGGTCGATCC 59.519 52.381 8.12 8.12 0.00 3.36
2187 2273 6.942576 ACTTTGCTCTAGGATTTGTGTTGTAT 59.057 34.615 0.00 0.00 0.00 2.29
2342 2457 1.523934 CGTTGTCGCTTTTCGGTAGTT 59.476 47.619 0.00 0.00 39.05 2.24
2343 2458 2.725723 CGTTGTCGCTTTTCGGTAGTTA 59.274 45.455 0.00 0.00 39.05 2.24
2380 2506 2.744202 GCGAGAACCACATGATTTGTCT 59.256 45.455 0.00 0.00 36.00 3.41
2410 2542 1.184322 ATGTGGCATTTGGACGGCAA 61.184 50.000 0.00 0.00 39.64 4.52
2512 2644 5.075493 ACTACTTCTTGACCCGTTTAGAGA 58.925 41.667 0.00 0.00 0.00 3.10
2548 2684 3.853307 GCCACTCATCAGAACCAAAAACG 60.853 47.826 0.00 0.00 0.00 3.60
2596 2737 8.919145 AGGAACAGAAAATGTGGTACAAAAATA 58.081 29.630 0.00 0.00 43.00 1.40
2648 2789 7.661040 ACATGATTTGTAGACCCAAGAAAAAG 58.339 34.615 0.00 0.00 36.57 2.27
2797 2938 8.804912 TTATCTATAGAGTAATCCCTTCGTCC 57.195 38.462 8.70 0.00 0.00 4.79
2798 2939 6.196918 TCTATAGAGTAATCCCTTCGTCCA 57.803 41.667 0.00 0.00 0.00 4.02
2799 2940 6.607970 TCTATAGAGTAATCCCTTCGTCCAA 58.392 40.000 0.00 0.00 0.00 3.53
2800 2941 7.064866 TCTATAGAGTAATCCCTTCGTCCAAA 58.935 38.462 0.00 0.00 0.00 3.28
2801 2942 4.473477 AGAGTAATCCCTTCGTCCAAAG 57.527 45.455 0.00 0.00 0.00 2.77
2802 2943 4.094476 AGAGTAATCCCTTCGTCCAAAGA 58.906 43.478 0.00 0.00 0.00 2.52
2803 2944 4.081586 AGAGTAATCCCTTCGTCCAAAGAC 60.082 45.833 0.00 0.00 39.83 3.01
2804 2945 2.491675 AATCCCTTCGTCCAAAGACC 57.508 50.000 0.00 0.00 40.12 3.85
2805 2946 1.657804 ATCCCTTCGTCCAAAGACCT 58.342 50.000 0.00 0.00 40.12 3.85
2806 2947 0.685097 TCCCTTCGTCCAAAGACCTG 59.315 55.000 0.00 0.00 40.12 4.00
2807 2948 0.685097 CCCTTCGTCCAAAGACCTGA 59.315 55.000 0.00 0.00 40.12 3.86
2808 2949 1.608283 CCCTTCGTCCAAAGACCTGAC 60.608 57.143 0.00 0.00 40.12 3.51
2809 2950 1.070134 CCTTCGTCCAAAGACCTGACA 59.930 52.381 0.00 0.00 40.12 3.58
2810 2951 2.408050 CTTCGTCCAAAGACCTGACAG 58.592 52.381 0.00 0.00 40.12 3.51
2811 2952 1.410004 TCGTCCAAAGACCTGACAGT 58.590 50.000 0.93 0.00 40.12 3.55
2812 2953 1.340248 TCGTCCAAAGACCTGACAGTC 59.660 52.381 0.93 0.00 40.12 3.51
2820 2961 3.618690 AGACCTGACAGTCTTTATGCC 57.381 47.619 1.31 0.00 44.83 4.40
2821 2962 2.906389 AGACCTGACAGTCTTTATGCCA 59.094 45.455 1.31 0.00 44.83 4.92
2822 2963 3.055530 AGACCTGACAGTCTTTATGCCAG 60.056 47.826 1.31 0.00 44.83 4.85
2823 2964 2.026822 ACCTGACAGTCTTTATGCCAGG 60.027 50.000 6.73 6.73 0.00 4.45
2824 2965 2.636830 CTGACAGTCTTTATGCCAGGG 58.363 52.381 1.31 0.00 0.00 4.45
2825 2966 1.985159 TGACAGTCTTTATGCCAGGGT 59.015 47.619 1.31 0.00 0.00 4.34
2826 2967 2.375174 TGACAGTCTTTATGCCAGGGTT 59.625 45.455 1.31 0.00 0.00 4.11
2827 2968 3.010420 GACAGTCTTTATGCCAGGGTTC 58.990 50.000 0.00 0.00 0.00 3.62
2828 2969 2.644798 ACAGTCTTTATGCCAGGGTTCT 59.355 45.455 0.00 0.00 0.00 3.01
2829 2970 3.844211 ACAGTCTTTATGCCAGGGTTCTA 59.156 43.478 0.00 0.00 0.00 2.10
2830 2971 4.288626 ACAGTCTTTATGCCAGGGTTCTAA 59.711 41.667 0.00 0.00 0.00 2.10
2831 2972 5.222048 ACAGTCTTTATGCCAGGGTTCTAAA 60.222 40.000 0.00 0.00 0.00 1.85
2832 2973 5.710099 CAGTCTTTATGCCAGGGTTCTAAAA 59.290 40.000 0.00 0.00 0.00 1.52
2833 2974 5.946377 AGTCTTTATGCCAGGGTTCTAAAAG 59.054 40.000 0.00 0.00 0.00 2.27
2834 2975 4.705023 TCTTTATGCCAGGGTTCTAAAAGC 59.295 41.667 0.00 0.00 0.00 3.51
2835 2976 2.603075 ATGCCAGGGTTCTAAAAGCA 57.397 45.000 0.00 0.00 34.50 3.91
2836 2977 2.373335 TGCCAGGGTTCTAAAAGCAA 57.627 45.000 0.00 0.00 34.50 3.91
2837 2978 2.672098 TGCCAGGGTTCTAAAAGCAAA 58.328 42.857 0.00 0.00 34.50 3.68
2838 2979 3.034635 TGCCAGGGTTCTAAAAGCAAAA 58.965 40.909 0.00 0.00 34.50 2.44
2839 2980 3.645687 TGCCAGGGTTCTAAAAGCAAAAT 59.354 39.130 0.00 0.00 34.50 1.82
2840 2981 4.835615 TGCCAGGGTTCTAAAAGCAAAATA 59.164 37.500 0.00 0.00 34.50 1.40
2841 2982 5.168569 GCCAGGGTTCTAAAAGCAAAATAC 58.831 41.667 0.00 0.00 34.50 1.89
2842 2983 5.047306 GCCAGGGTTCTAAAAGCAAAATACT 60.047 40.000 0.00 0.00 34.50 2.12
2843 2984 6.152154 GCCAGGGTTCTAAAAGCAAAATACTA 59.848 38.462 0.00 0.00 34.50 1.82
2844 2985 7.535997 CCAGGGTTCTAAAAGCAAAATACTAC 58.464 38.462 0.00 0.00 34.50 2.73
2845 2986 7.362660 CCAGGGTTCTAAAAGCAAAATACTACC 60.363 40.741 0.00 0.00 34.50 3.18
2846 2987 6.662234 AGGGTTCTAAAAGCAAAATACTACCC 59.338 38.462 0.00 0.00 40.44 3.69
2847 2988 6.434965 GGGTTCTAAAAGCAAAATACTACCCA 59.565 38.462 0.00 0.00 40.00 4.51
2848 2989 7.039574 GGGTTCTAAAAGCAAAATACTACCCAA 60.040 37.037 0.00 0.00 40.00 4.12
2849 2990 8.361889 GGTTCTAAAAGCAAAATACTACCCAAA 58.638 33.333 0.00 0.00 33.03 3.28
2850 2991 9.752961 GTTCTAAAAGCAAAATACTACCCAAAA 57.247 29.630 0.00 0.00 0.00 2.44
2851 2992 9.974980 TTCTAAAAGCAAAATACTACCCAAAAG 57.025 29.630 0.00 0.00 0.00 2.27
2852 2993 8.581578 TCTAAAAGCAAAATACTACCCAAAAGG 58.418 33.333 0.00 0.00 43.78 3.11
2853 2994 6.987403 AAAGCAAAATACTACCCAAAAGGA 57.013 33.333 0.00 0.00 39.89 3.36
2854 2995 6.987403 AAGCAAAATACTACCCAAAAGGAA 57.013 33.333 0.00 0.00 39.89 3.36
2855 2996 6.987403 AGCAAAATACTACCCAAAAGGAAA 57.013 33.333 0.00 0.00 39.89 3.13
2856 2997 7.553504 AGCAAAATACTACCCAAAAGGAAAT 57.446 32.000 0.00 0.00 39.89 2.17
2857 2998 7.973402 AGCAAAATACTACCCAAAAGGAAATT 58.027 30.769 0.00 0.00 39.89 1.82
2858 2999 8.436778 AGCAAAATACTACCCAAAAGGAAATTT 58.563 29.630 0.00 0.00 39.89 1.82
2859 3000 9.713713 GCAAAATACTACCCAAAAGGAAATTTA 57.286 29.630 0.00 0.00 39.89 1.40
2864 3005 9.777008 ATACTACCCAAAAGGAAATTTATTGGA 57.223 29.630 18.75 6.03 39.89 3.53
2865 3006 7.903145 ACTACCCAAAAGGAAATTTATTGGAC 58.097 34.615 18.75 0.00 39.89 4.02
2866 3007 6.755542 ACCCAAAAGGAAATTTATTGGACA 57.244 33.333 18.75 0.00 39.89 4.02
2867 3008 6.530120 ACCCAAAAGGAAATTTATTGGACAC 58.470 36.000 18.75 0.00 39.89 3.67
2868 3009 5.637387 CCCAAAAGGAAATTTATTGGACACG 59.363 40.000 18.75 5.66 38.24 4.49
2869 3010 5.637387 CCAAAAGGAAATTTATTGGACACGG 59.363 40.000 14.67 0.00 32.54 4.94
2870 3011 6.220201 CAAAAGGAAATTTATTGGACACGGT 58.780 36.000 0.00 0.00 0.00 4.83
2871 3012 5.638596 AAGGAAATTTATTGGACACGGTC 57.361 39.130 0.00 0.00 0.00 4.79
2872 3013 4.918588 AGGAAATTTATTGGACACGGTCT 58.081 39.130 0.00 0.00 32.47 3.85
2873 3014 5.321927 AGGAAATTTATTGGACACGGTCTT 58.678 37.500 0.00 0.00 32.47 3.01
2874 3015 5.414765 AGGAAATTTATTGGACACGGTCTTC 59.585 40.000 0.00 0.00 32.47 2.87
2875 3016 5.182380 GGAAATTTATTGGACACGGTCTTCA 59.818 40.000 0.00 0.00 32.47 3.02
2876 3017 5.622770 AATTTATTGGACACGGTCTTCAC 57.377 39.130 4.41 0.00 32.47 3.18
2877 3018 2.754946 TATTGGACACGGTCTTCACC 57.245 50.000 4.41 0.00 39.69 4.02
2878 3019 1.056660 ATTGGACACGGTCTTCACCT 58.943 50.000 4.41 0.00 41.17 4.00
2879 3020 0.391597 TTGGACACGGTCTTCACCTC 59.608 55.000 4.41 0.00 41.17 3.85
2880 3021 0.469331 TGGACACGGTCTTCACCTCT 60.469 55.000 4.41 0.00 41.17 3.69
2881 3022 0.038159 GGACACGGTCTTCACCTCTG 60.038 60.000 4.41 0.00 41.17 3.35
2882 3023 0.959553 GACACGGTCTTCACCTCTGA 59.040 55.000 0.00 0.00 41.17 3.27
2883 3024 1.546476 GACACGGTCTTCACCTCTGAT 59.454 52.381 0.00 0.00 41.17 2.90
2884 3025 1.273606 ACACGGTCTTCACCTCTGATG 59.726 52.381 0.00 0.00 41.17 3.07
2885 3026 0.898320 ACGGTCTTCACCTCTGATGG 59.102 55.000 0.00 0.00 41.17 3.51
2886 3027 1.186200 CGGTCTTCACCTCTGATGGA 58.814 55.000 0.00 0.00 41.17 3.41
2887 3028 1.759445 CGGTCTTCACCTCTGATGGAT 59.241 52.381 0.00 0.00 41.17 3.41
2888 3029 2.223923 CGGTCTTCACCTCTGATGGATC 60.224 54.545 0.00 0.00 41.17 3.36
2889 3030 2.768527 GGTCTTCACCTCTGATGGATCA 59.231 50.000 0.00 0.00 40.00 2.92
2890 3031 3.431486 GGTCTTCACCTCTGATGGATCAC 60.431 52.174 0.00 0.00 40.00 3.06
2891 3032 2.768527 TCTTCACCTCTGATGGATCACC 59.231 50.000 0.00 0.00 32.50 4.02
2892 3033 2.557555 TCACCTCTGATGGATCACCT 57.442 50.000 0.00 0.00 37.04 4.00
2893 3034 2.113807 TCACCTCTGATGGATCACCTG 58.886 52.381 0.00 0.00 37.04 4.00
2894 3035 1.836166 CACCTCTGATGGATCACCTGT 59.164 52.381 0.00 0.00 37.04 4.00
2895 3036 1.836166 ACCTCTGATGGATCACCTGTG 59.164 52.381 0.00 0.00 37.04 3.66
2896 3037 1.836166 CCTCTGATGGATCACCTGTGT 59.164 52.381 0.00 0.00 37.04 3.72
2897 3038 2.419713 CCTCTGATGGATCACCTGTGTG 60.420 54.545 0.00 0.00 44.18 3.82
2898 3039 1.556451 TCTGATGGATCACCTGTGTGG 59.444 52.381 0.00 0.00 42.98 4.17
2899 3040 0.035152 TGATGGATCACCTGTGTGGC 60.035 55.000 0.00 0.00 42.98 5.01
2900 3041 1.078214 ATGGATCACCTGTGTGGCG 60.078 57.895 0.00 0.00 42.98 5.69
2901 3042 1.841302 ATGGATCACCTGTGTGGCGT 61.841 55.000 0.00 0.00 42.98 5.68
2902 3043 2.034879 GGATCACCTGTGTGGCGTG 61.035 63.158 0.00 0.00 42.98 5.34
2903 3044 2.032528 ATCACCTGTGTGGCGTGG 59.967 61.111 0.00 0.00 42.98 4.94
2904 3045 2.449031 GATCACCTGTGTGGCGTGGA 62.449 60.000 0.00 0.00 42.98 4.02
2905 3046 2.050836 ATCACCTGTGTGGCGTGGAA 62.051 55.000 0.00 0.00 42.98 3.53
2906 3047 1.600636 CACCTGTGTGGCGTGGAAT 60.601 57.895 0.00 0.00 38.90 3.01
2907 3048 1.150536 ACCTGTGTGGCGTGGAATT 59.849 52.632 0.00 0.00 40.22 2.17
2908 3049 1.172180 ACCTGTGTGGCGTGGAATTG 61.172 55.000 0.00 0.00 40.22 2.32
2909 3050 0.888736 CCTGTGTGGCGTGGAATTGA 60.889 55.000 0.00 0.00 0.00 2.57
2910 3051 0.518636 CTGTGTGGCGTGGAATTGAG 59.481 55.000 0.00 0.00 0.00 3.02
2911 3052 0.179032 TGTGTGGCGTGGAATTGAGT 60.179 50.000 0.00 0.00 0.00 3.41
2912 3053 1.070914 TGTGTGGCGTGGAATTGAGTA 59.929 47.619 0.00 0.00 0.00 2.59
2913 3054 1.463444 GTGTGGCGTGGAATTGAGTAC 59.537 52.381 0.00 0.00 0.00 2.73
2914 3055 1.070914 TGTGGCGTGGAATTGAGTACA 59.929 47.619 0.00 0.00 0.00 2.90
2915 3056 1.732259 GTGGCGTGGAATTGAGTACAG 59.268 52.381 0.00 0.00 0.00 2.74
2916 3057 1.338674 TGGCGTGGAATTGAGTACAGG 60.339 52.381 0.00 0.00 0.00 4.00
2917 3058 0.727398 GCGTGGAATTGAGTACAGGC 59.273 55.000 0.00 0.00 37.52 4.85
2918 3059 1.676014 GCGTGGAATTGAGTACAGGCT 60.676 52.381 1.51 0.00 40.42 4.58
2919 3060 2.699954 CGTGGAATTGAGTACAGGCTT 58.300 47.619 0.00 0.00 0.00 4.35
2920 3061 2.416547 CGTGGAATTGAGTACAGGCTTG 59.583 50.000 0.00 0.00 0.00 4.01
2921 3062 3.674997 GTGGAATTGAGTACAGGCTTGA 58.325 45.455 1.40 0.00 0.00 3.02
2922 3063 4.072131 GTGGAATTGAGTACAGGCTTGAA 58.928 43.478 1.40 0.00 0.00 2.69
2923 3064 4.072131 TGGAATTGAGTACAGGCTTGAAC 58.928 43.478 1.40 0.00 0.00 3.18
2924 3065 4.202461 TGGAATTGAGTACAGGCTTGAACT 60.202 41.667 1.40 0.00 0.00 3.01
2925 3066 4.393371 GGAATTGAGTACAGGCTTGAACTC 59.607 45.833 1.40 11.77 39.04 3.01
2926 3067 3.402628 TTGAGTACAGGCTTGAACTCC 57.597 47.619 1.40 2.54 38.04 3.85
2927 3068 2.609747 TGAGTACAGGCTTGAACTCCT 58.390 47.619 1.40 0.00 38.04 3.69
2954 3095 4.494091 AAATGAGTGGTATGGAGAGTGG 57.506 45.455 0.00 0.00 0.00 4.00
2955 3096 1.866015 TGAGTGGTATGGAGAGTGGG 58.134 55.000 0.00 0.00 0.00 4.61
2956 3097 1.361197 TGAGTGGTATGGAGAGTGGGA 59.639 52.381 0.00 0.00 0.00 4.37
2957 3098 2.225522 TGAGTGGTATGGAGAGTGGGAA 60.226 50.000 0.00 0.00 0.00 3.97
2958 3099 2.838202 GAGTGGTATGGAGAGTGGGAAA 59.162 50.000 0.00 0.00 0.00 3.13
2959 3100 3.456277 GAGTGGTATGGAGAGTGGGAAAT 59.544 47.826 0.00 0.00 0.00 2.17
2960 3101 3.200825 AGTGGTATGGAGAGTGGGAAATG 59.799 47.826 0.00 0.00 0.00 2.32
2961 3102 3.054361 GTGGTATGGAGAGTGGGAAATGT 60.054 47.826 0.00 0.00 0.00 2.71
2962 3103 4.163458 GTGGTATGGAGAGTGGGAAATGTA 59.837 45.833 0.00 0.00 0.00 2.29
2963 3104 4.785914 TGGTATGGAGAGTGGGAAATGTAA 59.214 41.667 0.00 0.00 0.00 2.41
2964 3105 5.251932 TGGTATGGAGAGTGGGAAATGTAAA 59.748 40.000 0.00 0.00 0.00 2.01
2965 3106 5.823045 GGTATGGAGAGTGGGAAATGTAAAG 59.177 44.000 0.00 0.00 0.00 1.85
2966 3107 5.779241 ATGGAGAGTGGGAAATGTAAAGA 57.221 39.130 0.00 0.00 0.00 2.52
2967 3108 5.165961 TGGAGAGTGGGAAATGTAAAGAG 57.834 43.478 0.00 0.00 0.00 2.85
2968 3109 4.597507 TGGAGAGTGGGAAATGTAAAGAGT 59.402 41.667 0.00 0.00 0.00 3.24
2969 3110 5.783360 TGGAGAGTGGGAAATGTAAAGAGTA 59.217 40.000 0.00 0.00 0.00 2.59
2970 3111 6.443849 TGGAGAGTGGGAAATGTAAAGAGTAT 59.556 38.462 0.00 0.00 0.00 2.12
2971 3112 6.987404 GGAGAGTGGGAAATGTAAAGAGTATC 59.013 42.308 0.00 0.00 0.00 2.24
2972 3113 6.890293 AGAGTGGGAAATGTAAAGAGTATCC 58.110 40.000 0.00 0.00 33.66 2.59
2973 3114 6.443849 AGAGTGGGAAATGTAAAGAGTATCCA 59.556 38.462 0.00 0.00 33.66 3.41
2974 3115 7.027874 AGTGGGAAATGTAAAGAGTATCCAA 57.972 36.000 0.00 0.00 33.66 3.53
2975 3116 7.466804 AGTGGGAAATGTAAAGAGTATCCAAA 58.533 34.615 0.00 0.00 33.66 3.28
2976 3117 8.116026 AGTGGGAAATGTAAAGAGTATCCAAAT 58.884 33.333 0.00 0.00 33.66 2.32
2977 3118 8.406297 GTGGGAAATGTAAAGAGTATCCAAATC 58.594 37.037 0.00 0.00 33.66 2.17
2978 3119 7.559897 TGGGAAATGTAAAGAGTATCCAAATCC 59.440 37.037 0.00 0.00 33.66 3.01
2979 3120 7.780271 GGGAAATGTAAAGAGTATCCAAATCCT 59.220 37.037 0.00 0.00 33.66 3.24
2980 3121 9.190317 GGAAATGTAAAGAGTATCCAAATCCTT 57.810 33.333 0.00 0.00 33.66 3.36
2982 3123 8.438676 AATGTAAAGAGTATCCAAATCCTTCG 57.561 34.615 0.00 0.00 33.66 3.79
2983 3124 6.942976 TGTAAAGAGTATCCAAATCCTTCGT 58.057 36.000 0.00 0.00 33.66 3.85
2984 3125 6.816640 TGTAAAGAGTATCCAAATCCTTCGTG 59.183 38.462 0.00 0.00 33.66 4.35
2985 3126 5.677319 AAGAGTATCCAAATCCTTCGTGA 57.323 39.130 0.00 0.00 33.66 4.35
2986 3127 5.012328 AGAGTATCCAAATCCTTCGTGAC 57.988 43.478 0.00 0.00 33.66 3.67
2987 3128 4.466370 AGAGTATCCAAATCCTTCGTGACA 59.534 41.667 0.00 0.00 33.66 3.58
2988 3129 5.046591 AGAGTATCCAAATCCTTCGTGACAA 60.047 40.000 0.00 0.00 33.66 3.18
2989 3130 4.935808 AGTATCCAAATCCTTCGTGACAAC 59.064 41.667 0.00 0.00 0.00 3.32
2990 3131 3.485463 TCCAAATCCTTCGTGACAACT 57.515 42.857 0.00 0.00 0.00 3.16
2991 3132 3.138304 TCCAAATCCTTCGTGACAACTG 58.862 45.455 0.00 0.00 0.00 3.16
2992 3133 2.226437 CCAAATCCTTCGTGACAACTGG 59.774 50.000 0.00 0.00 0.00 4.00
2993 3134 3.138304 CAAATCCTTCGTGACAACTGGA 58.862 45.455 0.00 0.00 0.00 3.86
2994 3135 3.703001 AATCCTTCGTGACAACTGGAT 57.297 42.857 0.00 0.00 36.03 3.41
2995 3136 4.819105 AATCCTTCGTGACAACTGGATA 57.181 40.909 0.00 0.00 34.33 2.59
2996 3137 3.587797 TCCTTCGTGACAACTGGATAC 57.412 47.619 0.00 0.00 0.00 2.24
2997 3138 2.232941 TCCTTCGTGACAACTGGATACC 59.767 50.000 0.00 0.00 0.00 2.73
2998 3139 2.233922 CCTTCGTGACAACTGGATACCT 59.766 50.000 0.00 0.00 0.00 3.08
2999 3140 3.512680 CTTCGTGACAACTGGATACCTC 58.487 50.000 0.00 0.00 0.00 3.85
3000 3141 1.471287 TCGTGACAACTGGATACCTCG 59.529 52.381 0.00 0.00 0.00 4.63
3001 3142 1.471287 CGTGACAACTGGATACCTCGA 59.529 52.381 0.00 0.00 0.00 4.04
3002 3143 2.731341 CGTGACAACTGGATACCTCGAC 60.731 54.545 0.00 0.00 0.00 4.20
3003 3144 2.230508 GTGACAACTGGATACCTCGACA 59.769 50.000 0.00 0.00 0.00 4.35
3004 3145 2.894765 TGACAACTGGATACCTCGACAA 59.105 45.455 0.00 0.00 0.00 3.18
3005 3146 3.513912 TGACAACTGGATACCTCGACAAT 59.486 43.478 0.00 0.00 0.00 2.71
3006 3147 4.113354 GACAACTGGATACCTCGACAATC 58.887 47.826 0.00 0.00 0.00 2.67
3007 3148 3.769844 ACAACTGGATACCTCGACAATCT 59.230 43.478 0.00 0.00 0.00 2.40
3008 3149 4.115516 CAACTGGATACCTCGACAATCTG 58.884 47.826 0.00 0.00 0.00 2.90
3009 3150 2.695666 ACTGGATACCTCGACAATCTGG 59.304 50.000 0.00 0.00 0.00 3.86
3010 3151 1.412710 TGGATACCTCGACAATCTGGC 59.587 52.381 0.00 0.00 0.00 4.85
3011 3152 1.270358 GGATACCTCGACAATCTGGCC 60.270 57.143 0.00 0.00 0.00 5.36
3012 3153 1.689273 GATACCTCGACAATCTGGCCT 59.311 52.381 3.32 0.00 0.00 5.19
3013 3154 1.568504 TACCTCGACAATCTGGCCTT 58.431 50.000 3.32 0.00 0.00 4.35
3014 3155 0.693049 ACCTCGACAATCTGGCCTTT 59.307 50.000 3.32 0.00 0.00 3.11
3015 3156 1.339151 ACCTCGACAATCTGGCCTTTC 60.339 52.381 3.32 0.00 0.00 2.62
3016 3157 1.373570 CTCGACAATCTGGCCTTTCC 58.626 55.000 3.32 0.00 0.00 3.13
3017 3158 0.690192 TCGACAATCTGGCCTTTCCA 59.310 50.000 3.32 0.00 44.18 3.53
3018 3159 1.281867 TCGACAATCTGGCCTTTCCAT 59.718 47.619 3.32 0.00 45.50 3.41
3019 3160 2.503765 TCGACAATCTGGCCTTTCCATA 59.496 45.455 3.32 0.00 45.50 2.74
3020 3161 2.614057 CGACAATCTGGCCTTTCCATAC 59.386 50.000 3.32 0.00 45.50 2.39
3021 3162 3.620488 GACAATCTGGCCTTTCCATACA 58.380 45.455 3.32 0.00 45.50 2.29
3022 3163 4.016444 GACAATCTGGCCTTTCCATACAA 58.984 43.478 3.32 0.00 45.50 2.41
3023 3164 4.613437 ACAATCTGGCCTTTCCATACAAT 58.387 39.130 3.32 0.00 45.50 2.71
3024 3165 4.646492 ACAATCTGGCCTTTCCATACAATC 59.354 41.667 3.32 0.00 45.50 2.67
3025 3166 3.297134 TCTGGCCTTTCCATACAATCC 57.703 47.619 3.32 0.00 45.50 3.01
3026 3167 2.580322 TCTGGCCTTTCCATACAATCCA 59.420 45.455 3.32 0.00 45.50 3.41
3027 3168 3.205056 TCTGGCCTTTCCATACAATCCAT 59.795 43.478 3.32 0.00 45.50 3.41
3028 3169 3.298619 TGGCCTTTCCATACAATCCATG 58.701 45.455 3.32 0.00 40.72 3.66
3029 3170 3.053019 TGGCCTTTCCATACAATCCATGA 60.053 43.478 3.32 0.00 40.72 3.07
3030 3171 3.960102 GGCCTTTCCATACAATCCATGAA 59.040 43.478 0.00 0.00 34.01 2.57
3031 3172 4.405358 GGCCTTTCCATACAATCCATGAAA 59.595 41.667 0.00 0.00 34.01 2.69
3032 3173 5.104982 GGCCTTTCCATACAATCCATGAAAA 60.105 40.000 0.00 0.00 34.01 2.29
3033 3174 5.812127 GCCTTTCCATACAATCCATGAAAAC 59.188 40.000 0.00 0.00 0.00 2.43
3034 3175 6.351286 GCCTTTCCATACAATCCATGAAAACT 60.351 38.462 0.00 0.00 0.00 2.66
3035 3176 7.147915 GCCTTTCCATACAATCCATGAAAACTA 60.148 37.037 0.00 0.00 0.00 2.24
3036 3177 8.408601 CCTTTCCATACAATCCATGAAAACTAG 58.591 37.037 0.00 0.00 0.00 2.57
3037 3178 9.177608 CTTTCCATACAATCCATGAAAACTAGA 57.822 33.333 0.00 0.00 0.00 2.43
3038 3179 9.527157 TTTCCATACAATCCATGAAAACTAGAA 57.473 29.630 0.00 0.00 0.00 2.10
3039 3180 8.737168 TCCATACAATCCATGAAAACTAGAAG 57.263 34.615 0.00 0.00 0.00 2.85
3040 3181 8.328758 TCCATACAATCCATGAAAACTAGAAGT 58.671 33.333 0.00 0.00 0.00 3.01
3041 3182 8.616076 CCATACAATCCATGAAAACTAGAAGTC 58.384 37.037 0.00 0.00 0.00 3.01
3042 3183 6.727824 ACAATCCATGAAAACTAGAAGTCG 57.272 37.500 0.00 0.00 0.00 4.18
3043 3184 5.643777 ACAATCCATGAAAACTAGAAGTCGG 59.356 40.000 0.00 0.00 0.00 4.79
3044 3185 3.596214 TCCATGAAAACTAGAAGTCGGC 58.404 45.455 0.00 0.00 0.00 5.54
3045 3186 3.260884 TCCATGAAAACTAGAAGTCGGCT 59.739 43.478 0.00 0.00 0.00 5.52
3046 3187 4.003648 CCATGAAAACTAGAAGTCGGCTT 58.996 43.478 0.00 0.00 37.71 4.35
3047 3188 5.046878 TCCATGAAAACTAGAAGTCGGCTTA 60.047 40.000 0.17 0.00 34.61 3.09
3048 3189 5.292101 CCATGAAAACTAGAAGTCGGCTTAG 59.708 44.000 0.17 0.00 34.61 2.18
3049 3190 5.717078 TGAAAACTAGAAGTCGGCTTAGA 57.283 39.130 0.17 0.00 34.61 2.10
3050 3191 6.282199 TGAAAACTAGAAGTCGGCTTAGAT 57.718 37.500 0.17 0.00 34.61 1.98
3051 3192 6.100004 TGAAAACTAGAAGTCGGCTTAGATG 58.900 40.000 0.17 0.00 34.61 2.90
3052 3193 4.657436 AACTAGAAGTCGGCTTAGATGG 57.343 45.455 0.17 0.00 34.61 3.51
3053 3194 2.959707 ACTAGAAGTCGGCTTAGATGGG 59.040 50.000 0.17 0.00 34.61 4.00
3054 3195 1.867363 AGAAGTCGGCTTAGATGGGT 58.133 50.000 0.17 0.00 34.61 4.51
3055 3196 3.028094 AGAAGTCGGCTTAGATGGGTA 57.972 47.619 0.17 0.00 34.61 3.69
3056 3197 3.371965 AGAAGTCGGCTTAGATGGGTAA 58.628 45.455 0.17 0.00 34.61 2.85
3057 3198 3.773119 AGAAGTCGGCTTAGATGGGTAAA 59.227 43.478 0.17 0.00 34.61 2.01
3058 3199 3.538634 AGTCGGCTTAGATGGGTAAAC 57.461 47.619 0.00 0.00 0.00 2.01
3059 3200 2.169978 AGTCGGCTTAGATGGGTAAACC 59.830 50.000 0.00 0.00 40.81 3.27
3060 3201 5.850013 AAGTCGGCTTAGATGGGTAAACCA 61.850 45.833 0.00 0.00 43.12 3.67
3061 3202 7.598932 AAGTCGGCTTAGATGGGTAAACCAG 62.599 48.000 0.00 0.00 42.56 4.00
3069 3210 2.445682 TGGGTAAACCAGTTGTTGCT 57.554 45.000 0.81 0.00 46.80 3.91
3070 3211 2.741145 TGGGTAAACCAGTTGTTGCTT 58.259 42.857 0.81 0.00 46.80 3.91
3071 3212 2.691011 TGGGTAAACCAGTTGTTGCTTC 59.309 45.455 0.81 0.00 46.80 3.86
3072 3213 2.035449 GGGTAAACCAGTTGTTGCTTCC 59.965 50.000 0.81 0.00 37.23 3.46
3073 3214 2.035449 GGTAAACCAGTTGTTGCTTCCC 59.965 50.000 0.00 0.00 37.23 3.97
3074 3215 1.119684 AAACCAGTTGTTGCTTCCCC 58.880 50.000 0.00 0.00 37.23 4.81
3075 3216 0.032615 AACCAGTTGTTGCTTCCCCA 60.033 50.000 0.00 0.00 35.31 4.96
3076 3217 0.188342 ACCAGTTGTTGCTTCCCCAT 59.812 50.000 0.00 0.00 0.00 4.00
3077 3218 1.341080 CCAGTTGTTGCTTCCCCATT 58.659 50.000 0.00 0.00 0.00 3.16
3078 3219 1.273327 CCAGTTGTTGCTTCCCCATTC 59.727 52.381 0.00 0.00 0.00 2.67
3079 3220 2.242043 CAGTTGTTGCTTCCCCATTCT 58.758 47.619 0.00 0.00 0.00 2.40
3080 3221 3.420893 CAGTTGTTGCTTCCCCATTCTA 58.579 45.455 0.00 0.00 0.00 2.10
3081 3222 3.826157 CAGTTGTTGCTTCCCCATTCTAA 59.174 43.478 0.00 0.00 0.00 2.10
3082 3223 4.463891 CAGTTGTTGCTTCCCCATTCTAAT 59.536 41.667 0.00 0.00 0.00 1.73
3083 3224 4.463891 AGTTGTTGCTTCCCCATTCTAATG 59.536 41.667 0.00 0.00 36.17 1.90
3084 3225 4.046286 TGTTGCTTCCCCATTCTAATGT 57.954 40.909 2.25 0.00 34.60 2.71
3085 3226 4.016444 TGTTGCTTCCCCATTCTAATGTC 58.984 43.478 2.25 0.00 34.60 3.06
3086 3227 4.263905 TGTTGCTTCCCCATTCTAATGTCT 60.264 41.667 2.25 0.00 34.60 3.41
3087 3228 3.889815 TGCTTCCCCATTCTAATGTCTG 58.110 45.455 2.25 0.00 34.60 3.51
3088 3229 3.217626 GCTTCCCCATTCTAATGTCTGG 58.782 50.000 2.25 0.69 34.60 3.86
3089 3230 3.117888 GCTTCCCCATTCTAATGTCTGGA 60.118 47.826 2.25 2.78 34.60 3.86
3090 3231 4.628715 GCTTCCCCATTCTAATGTCTGGAA 60.629 45.833 13.47 13.47 35.82 3.53
3091 3232 4.503714 TCCCCATTCTAATGTCTGGAAC 57.496 45.455 2.25 0.00 34.60 3.62
3092 3233 3.849574 TCCCCATTCTAATGTCTGGAACA 59.150 43.478 2.25 0.00 43.51 3.18
3093 3234 4.290985 TCCCCATTCTAATGTCTGGAACAA 59.709 41.667 2.25 0.00 42.37 2.83
3094 3235 4.641989 CCCCATTCTAATGTCTGGAACAAG 59.358 45.833 2.25 0.00 42.37 3.16
3095 3236 4.096984 CCCATTCTAATGTCTGGAACAAGC 59.903 45.833 2.25 0.00 42.37 4.01
3096 3237 4.701651 CCATTCTAATGTCTGGAACAAGCA 59.298 41.667 2.25 0.00 42.37 3.91
3097 3238 5.163683 CCATTCTAATGTCTGGAACAAGCAG 60.164 44.000 2.25 0.00 42.37 4.24
3098 3239 4.890158 TCTAATGTCTGGAACAAGCAGA 57.110 40.909 0.00 0.00 42.37 4.26
3099 3240 5.426689 TCTAATGTCTGGAACAAGCAGAT 57.573 39.130 0.00 0.00 42.37 2.90
3100 3241 5.423015 TCTAATGTCTGGAACAAGCAGATC 58.577 41.667 0.00 0.00 42.37 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.449131 TGCTTGAGCTCTGAGGAATAATG 58.551 43.478 16.19 0.00 42.66 1.90
12 13 1.669604 ATGCATGCTTGAGCTCTGAG 58.330 50.000 20.33 13.61 42.66 3.35
50 51 6.202331 TCCTCATAATGGTGTCTTAGAAGGA 58.798 40.000 0.00 0.00 0.00 3.36
73 74 4.509600 GTCTACCATAAAGTCAGCATGCTC 59.490 45.833 19.68 7.90 34.76 4.26
113 116 1.500108 GGAGAGCATTCGCAGATCAG 58.500 55.000 0.00 0.00 42.27 2.90
119 122 1.552799 TTGGAGGGAGAGCATTCGCA 61.553 55.000 7.17 0.00 42.27 5.10
121 124 1.945394 CATTTGGAGGGAGAGCATTCG 59.055 52.381 0.00 0.00 0.00 3.34
123 126 1.925255 TCCATTTGGAGGGAGAGCATT 59.075 47.619 0.00 0.00 39.78 3.56
144 147 2.118313 TCGTCGTCTTCCAGTGGATA 57.882 50.000 14.00 1.12 0.00 2.59
171 174 4.487714 AGATTAATCCTTCCGTGCTTCA 57.512 40.909 11.92 0.00 0.00 3.02
178 181 3.646637 AGGGTGGTAGATTAATCCTTCCG 59.353 47.826 11.92 0.00 0.00 4.30
180 183 5.130477 TGTCAGGGTGGTAGATTAATCCTTC 59.870 44.000 11.92 3.17 0.00 3.46
252 255 5.885881 ACATCTGCGACTTTTTGTTACAAA 58.114 33.333 6.41 6.41 0.00 2.83
253 256 5.493133 ACATCTGCGACTTTTTGTTACAA 57.507 34.783 0.00 0.00 0.00 2.41
301 304 2.418368 TACCATAAACAGGGCAGCAG 57.582 50.000 0.00 0.00 0.00 4.24
379 382 2.215451 ATTTGCCCAGGCGACATCCT 62.215 55.000 3.83 0.00 45.51 3.24
380 383 1.754234 ATTTGCCCAGGCGACATCC 60.754 57.895 3.83 0.00 45.51 3.51
381 384 1.315257 ACATTTGCCCAGGCGACATC 61.315 55.000 3.83 0.00 45.51 3.06
382 385 0.034574 TACATTTGCCCAGGCGACAT 60.035 50.000 3.83 0.00 45.51 3.06
383 386 0.034574 ATACATTTGCCCAGGCGACA 60.035 50.000 3.83 0.00 45.51 4.35
384 387 1.961793 TATACATTTGCCCAGGCGAC 58.038 50.000 3.83 0.00 45.51 5.19
385 388 2.719531 TTATACATTTGCCCAGGCGA 57.280 45.000 3.83 0.00 45.51 5.54
386 389 4.072131 AGTATTATACATTTGCCCAGGCG 58.928 43.478 3.83 0.00 45.51 5.52
387 390 4.321230 GCAGTATTATACATTTGCCCAGGC 60.321 45.833 0.38 0.38 42.35 4.85
388 391 4.826733 TGCAGTATTATACATTTGCCCAGG 59.173 41.667 10.98 0.00 29.37 4.45
389 392 6.262944 TCTTGCAGTATTATACATTTGCCCAG 59.737 38.462 10.98 8.08 29.37 4.45
390 393 6.125719 TCTTGCAGTATTATACATTTGCCCA 58.874 36.000 10.98 0.65 29.37 5.36
394 397 9.390795 GCTCAATCTTGCAGTATTATACATTTG 57.609 33.333 5.11 0.00 0.00 2.32
471 474 1.347707 ACGGGAAGAGTCATTCAAGCA 59.652 47.619 0.00 0.00 0.00 3.91
508 511 4.573607 AGTTTCTCTCAACCGTGTTTAACC 59.426 41.667 0.00 0.00 0.00 2.85
708 715 1.140589 CAGTAGTCTGGGCTCTGCG 59.859 63.158 0.00 0.00 37.97 5.18
715 722 1.475403 ATGGTCGTCAGTAGTCTGGG 58.525 55.000 0.00 0.00 41.59 4.45
723 730 5.142061 TGTATGTTGTAATGGTCGTCAGT 57.858 39.130 0.00 0.00 0.00 3.41
740 747 2.682352 TCCCGTGATTGTTGCATGTATG 59.318 45.455 0.00 0.00 0.00 2.39
741 748 2.682856 GTCCCGTGATTGTTGCATGTAT 59.317 45.455 0.00 0.00 0.00 2.29
742 749 2.080693 GTCCCGTGATTGTTGCATGTA 58.919 47.619 0.00 0.00 0.00 2.29
798 805 8.547894 GTCGTACACAAATTGATGCATAGATAA 58.452 33.333 0.00 0.00 0.00 1.75
802 809 6.187480 CAGTCGTACACAAATTGATGCATAG 58.813 40.000 0.00 0.00 0.00 2.23
805 820 3.364864 GCAGTCGTACACAAATTGATGCA 60.365 43.478 0.00 0.00 0.00 3.96
809 824 2.473609 GTCGCAGTCGTACACAAATTGA 59.526 45.455 0.00 0.00 36.96 2.57
810 825 2.475111 AGTCGCAGTCGTACACAAATTG 59.525 45.455 0.00 0.00 36.96 2.32
818 833 0.167470 TGCAGTAGTCGCAGTCGTAC 59.833 55.000 0.00 0.00 33.55 3.67
822 837 2.065993 TCTTTGCAGTAGTCGCAGTC 57.934 50.000 0.00 0.00 41.18 3.51
823 838 2.408050 CTTCTTTGCAGTAGTCGCAGT 58.592 47.619 0.00 0.00 41.18 4.40
826 841 2.080286 TCCTTCTTTGCAGTAGTCGC 57.920 50.000 0.00 0.00 0.00 5.19
828 843 4.207891 TGGATCCTTCTTTGCAGTAGTC 57.792 45.455 14.23 0.00 0.00 2.59
830 845 6.129053 GATTTGGATCCTTCTTTGCAGTAG 57.871 41.667 14.23 0.00 0.00 2.57
949 972 2.105134 TGAGGCTAGGAAACAAAACCGA 59.895 45.455 0.00 0.00 0.00 4.69
992 1015 0.585357 GATGCTCGCCATTGTAGCTG 59.415 55.000 0.00 0.00 37.16 4.24
1104 1139 2.721167 CGGCTTGATGTCCGGGAGA 61.721 63.158 0.00 0.00 41.82 3.71
1137 1172 1.375523 GTTCTGGAACGCCGACCAT 60.376 57.895 7.98 0.00 36.79 3.55
1305 1346 1.079057 GACCTCCAGGCCGAAGTTC 60.079 63.158 0.00 0.00 39.32 3.01
1347 1388 1.408822 GGGGACATCATCTTGGTGACC 60.409 57.143 0.00 0.00 41.51 4.02
1351 1392 1.224592 GCGGGGACATCATCTTGGT 59.775 57.895 0.00 0.00 0.00 3.67
1791 1859 3.063084 GACTCCAGGTCGACGGCT 61.063 66.667 9.92 0.00 35.07 5.52
2142 2228 7.489757 GCAAAGTGAATATATGCCCGTTAAAAA 59.510 33.333 0.00 0.00 0.00 1.94
2143 2229 6.975772 GCAAAGTGAATATATGCCCGTTAAAA 59.024 34.615 0.00 0.00 0.00 1.52
2144 2230 6.320164 AGCAAAGTGAATATATGCCCGTTAAA 59.680 34.615 0.00 0.00 37.73 1.52
2145 2231 5.825679 AGCAAAGTGAATATATGCCCGTTAA 59.174 36.000 0.00 0.00 37.73 2.01
2187 2273 3.417101 CACACCCAGTGGCTAATGTTTA 58.583 45.455 2.61 0.00 44.69 2.01
2342 2457 2.747989 CTCGCCTGCTCCGTTAGATATA 59.252 50.000 0.00 0.00 0.00 0.86
2343 2458 1.542030 CTCGCCTGCTCCGTTAGATAT 59.458 52.381 0.00 0.00 0.00 1.63
2380 2506 4.041762 GCCACATGGAACCCCCGA 62.042 66.667 0.87 0.00 37.93 5.14
2481 2613 3.366171 GGGTCAAGAAGTAGTCTCACGAC 60.366 52.174 0.00 0.00 40.54 4.34
2482 2614 2.818432 GGGTCAAGAAGTAGTCTCACGA 59.182 50.000 0.00 0.00 34.56 4.35
2494 2626 3.893200 TCAGTCTCTAAACGGGTCAAGAA 59.107 43.478 0.00 0.00 0.00 2.52
2512 2644 1.202582 GAGTGGCACGACATAGTCAGT 59.797 52.381 12.71 0.00 32.09 3.41
2548 2684 3.680458 TGTGTTTTTGTTTCTTTTCCCGC 59.320 39.130 0.00 0.00 0.00 6.13
2596 2737 1.464608 CTTGCGTGACATCCAAACGAT 59.535 47.619 0.00 0.00 39.64 3.73
2648 2789 3.802948 ACACGAGGTAATGAGACATCC 57.197 47.619 0.00 0.00 0.00 3.51
2697 2838 3.306433 GGTTTGTATGGAACGGGCAATTT 60.306 43.478 0.00 0.00 0.00 1.82
2774 2915 6.791371 TGGACGAAGGGATTACTCTATAGAT 58.209 40.000 2.11 0.00 0.00 1.98
2801 2942 3.265791 CTGGCATAAAGACTGTCAGGTC 58.734 50.000 10.88 0.00 41.55 3.85
2802 2943 3.340814 CTGGCATAAAGACTGTCAGGT 57.659 47.619 10.88 0.00 41.55 4.00
2804 2945 2.026822 ACCCTGGCATAAAGACTGTCAG 60.027 50.000 10.88 0.00 44.17 3.51
2805 2946 1.985159 ACCCTGGCATAAAGACTGTCA 59.015 47.619 10.88 0.00 0.00 3.58
2806 2947 2.789409 ACCCTGGCATAAAGACTGTC 57.211 50.000 0.00 0.00 0.00 3.51
2807 2948 2.644798 AGAACCCTGGCATAAAGACTGT 59.355 45.455 0.00 0.00 0.00 3.55
2808 2949 3.356529 AGAACCCTGGCATAAAGACTG 57.643 47.619 0.00 0.00 0.00 3.51
2809 2950 5.514500 TTTAGAACCCTGGCATAAAGACT 57.486 39.130 0.00 0.00 0.00 3.24
2810 2951 5.393135 GCTTTTAGAACCCTGGCATAAAGAC 60.393 44.000 0.00 0.00 0.00 3.01
2811 2952 4.705023 GCTTTTAGAACCCTGGCATAAAGA 59.295 41.667 0.00 0.00 0.00 2.52
2812 2953 4.462483 TGCTTTTAGAACCCTGGCATAAAG 59.538 41.667 0.00 0.00 0.00 1.85
2813 2954 4.411927 TGCTTTTAGAACCCTGGCATAAA 58.588 39.130 0.00 0.00 0.00 1.40
2814 2955 4.040936 TGCTTTTAGAACCCTGGCATAA 57.959 40.909 0.00 0.00 0.00 1.90
2815 2956 3.730215 TGCTTTTAGAACCCTGGCATA 57.270 42.857 0.00 0.00 0.00 3.14
2816 2957 2.603075 TGCTTTTAGAACCCTGGCAT 57.397 45.000 0.00 0.00 0.00 4.40
2817 2958 2.373335 TTGCTTTTAGAACCCTGGCA 57.627 45.000 0.00 0.00 0.00 4.92
2818 2959 3.744238 TTTTGCTTTTAGAACCCTGGC 57.256 42.857 0.00 0.00 0.00 4.85
2819 2960 6.590234 AGTATTTTGCTTTTAGAACCCTGG 57.410 37.500 0.00 0.00 0.00 4.45
2820 2961 7.362660 GGGTAGTATTTTGCTTTTAGAACCCTG 60.363 40.741 0.00 0.00 38.87 4.45
2821 2962 6.662234 GGGTAGTATTTTGCTTTTAGAACCCT 59.338 38.462 0.00 0.00 38.87 4.34
2822 2963 6.434965 TGGGTAGTATTTTGCTTTTAGAACCC 59.565 38.462 0.00 0.00 41.67 4.11
2823 2964 7.457024 TGGGTAGTATTTTGCTTTTAGAACC 57.543 36.000 0.00 0.00 0.00 3.62
2824 2965 9.752961 TTTTGGGTAGTATTTTGCTTTTAGAAC 57.247 29.630 0.00 0.00 0.00 3.01
2825 2966 9.974980 CTTTTGGGTAGTATTTTGCTTTTAGAA 57.025 29.630 0.00 0.00 0.00 2.10
2826 2967 8.581578 CCTTTTGGGTAGTATTTTGCTTTTAGA 58.418 33.333 0.00 0.00 35.46 2.10
2827 2968 8.581578 TCCTTTTGGGTAGTATTTTGCTTTTAG 58.418 33.333 0.00 0.00 40.87 1.85
2828 2969 8.480133 TCCTTTTGGGTAGTATTTTGCTTTTA 57.520 30.769 0.00 0.00 40.87 1.52
2829 2970 7.368198 TCCTTTTGGGTAGTATTTTGCTTTT 57.632 32.000 0.00 0.00 40.87 2.27
2830 2971 6.987403 TCCTTTTGGGTAGTATTTTGCTTT 57.013 33.333 0.00 0.00 40.87 3.51
2831 2972 6.987403 TTCCTTTTGGGTAGTATTTTGCTT 57.013 33.333 0.00 0.00 40.87 3.91
2832 2973 6.987403 TTTCCTTTTGGGTAGTATTTTGCT 57.013 33.333 0.00 0.00 40.87 3.91
2833 2974 8.615878 AAATTTCCTTTTGGGTAGTATTTTGC 57.384 30.769 0.00 0.00 40.87 3.68
2838 2979 9.777008 TCCAATAAATTTCCTTTTGGGTAGTAT 57.223 29.630 16.07 0.00 40.87 2.12
2839 2980 9.027202 GTCCAATAAATTTCCTTTTGGGTAGTA 57.973 33.333 16.07 1.91 40.87 1.82
2840 2981 7.511028 TGTCCAATAAATTTCCTTTTGGGTAGT 59.489 33.333 16.07 0.00 40.87 2.73
2841 2982 7.817478 GTGTCCAATAAATTTCCTTTTGGGTAG 59.183 37.037 16.07 0.00 40.87 3.18
2842 2983 7.524038 CGTGTCCAATAAATTTCCTTTTGGGTA 60.524 37.037 16.07 7.84 40.87 3.69
2843 2984 6.530120 GTGTCCAATAAATTTCCTTTTGGGT 58.470 36.000 16.07 0.00 40.87 4.51
2844 2985 5.637387 CGTGTCCAATAAATTTCCTTTTGGG 59.363 40.000 16.07 3.72 40.87 4.12
2845 2986 5.637387 CCGTGTCCAATAAATTTCCTTTTGG 59.363 40.000 12.49 12.49 42.21 3.28
2846 2987 6.220201 ACCGTGTCCAATAAATTTCCTTTTG 58.780 36.000 0.00 0.00 0.00 2.44
2847 2988 6.266786 AGACCGTGTCCAATAAATTTCCTTTT 59.733 34.615 0.00 0.00 32.18 2.27
2848 2989 5.773176 AGACCGTGTCCAATAAATTTCCTTT 59.227 36.000 0.00 0.00 32.18 3.11
2849 2990 5.321927 AGACCGTGTCCAATAAATTTCCTT 58.678 37.500 0.00 0.00 32.18 3.36
2850 2991 4.918588 AGACCGTGTCCAATAAATTTCCT 58.081 39.130 0.00 0.00 32.18 3.36
2851 2992 5.182380 TGAAGACCGTGTCCAATAAATTTCC 59.818 40.000 0.00 0.00 32.18 3.13
2852 2993 6.084277 GTGAAGACCGTGTCCAATAAATTTC 58.916 40.000 0.00 0.00 32.18 2.17
2853 2994 5.048294 GGTGAAGACCGTGTCCAATAAATTT 60.048 40.000 0.00 0.00 32.18 1.82
2854 2995 4.457949 GGTGAAGACCGTGTCCAATAAATT 59.542 41.667 1.06 0.00 32.18 1.82
2855 2996 4.007659 GGTGAAGACCGTGTCCAATAAAT 58.992 43.478 1.06 0.00 32.18 1.40
2856 2997 3.404899 GGTGAAGACCGTGTCCAATAAA 58.595 45.455 1.06 0.00 32.18 1.40
2857 2998 3.048337 GGTGAAGACCGTGTCCAATAA 57.952 47.619 1.06 0.00 32.18 1.40
2858 2999 2.754946 GGTGAAGACCGTGTCCAATA 57.245 50.000 1.06 0.00 32.18 1.90
2859 3000 3.625745 GGTGAAGACCGTGTCCAAT 57.374 52.632 1.06 0.00 32.18 3.16
2867 3008 4.750231 TGATCCATCAGAGGTGAAGACCG 61.750 52.174 0.00 0.00 38.59 4.79
2868 3009 2.768527 TGATCCATCAGAGGTGAAGACC 59.231 50.000 0.00 0.00 35.88 3.85
2869 3010 3.431486 GGTGATCCATCAGAGGTGAAGAC 60.431 52.174 0.00 0.00 37.51 3.01
2870 3011 2.768527 GGTGATCCATCAGAGGTGAAGA 59.231 50.000 0.00 0.00 37.51 2.87
2871 3012 2.770802 AGGTGATCCATCAGAGGTGAAG 59.229 50.000 0.00 0.00 37.51 3.02
2872 3013 2.502947 CAGGTGATCCATCAGAGGTGAA 59.497 50.000 0.00 0.00 37.51 3.18
2873 3014 2.113807 CAGGTGATCCATCAGAGGTGA 58.886 52.381 0.00 0.00 37.51 4.02
2874 3015 1.836166 ACAGGTGATCCATCAGAGGTG 59.164 52.381 0.00 0.00 37.51 4.00
2875 3016 1.836166 CACAGGTGATCCATCAGAGGT 59.164 52.381 0.00 0.00 37.51 3.85
2876 3017 1.836166 ACACAGGTGATCCATCAGAGG 59.164 52.381 6.40 0.00 37.51 3.69
2889 3030 1.150536 AATTCCACGCCACACAGGT 59.849 52.632 0.00 0.00 40.61 4.00
2890 3031 0.888736 TCAATTCCACGCCACACAGG 60.889 55.000 0.00 0.00 41.84 4.00
2891 3032 0.518636 CTCAATTCCACGCCACACAG 59.481 55.000 0.00 0.00 0.00 3.66
2892 3033 0.179032 ACTCAATTCCACGCCACACA 60.179 50.000 0.00 0.00 0.00 3.72
2893 3034 1.463444 GTACTCAATTCCACGCCACAC 59.537 52.381 0.00 0.00 0.00 3.82
2894 3035 1.070914 TGTACTCAATTCCACGCCACA 59.929 47.619 0.00 0.00 0.00 4.17
2895 3036 1.732259 CTGTACTCAATTCCACGCCAC 59.268 52.381 0.00 0.00 0.00 5.01
2896 3037 1.338674 CCTGTACTCAATTCCACGCCA 60.339 52.381 0.00 0.00 0.00 5.69
2897 3038 1.369625 CCTGTACTCAATTCCACGCC 58.630 55.000 0.00 0.00 0.00 5.68
2898 3039 0.727398 GCCTGTACTCAATTCCACGC 59.273 55.000 0.00 0.00 0.00 5.34
2899 3040 2.386661 AGCCTGTACTCAATTCCACG 57.613 50.000 0.00 0.00 0.00 4.94
2900 3041 3.674997 TCAAGCCTGTACTCAATTCCAC 58.325 45.455 0.00 0.00 0.00 4.02
2901 3042 4.072131 GTTCAAGCCTGTACTCAATTCCA 58.928 43.478 0.00 0.00 0.00 3.53
2902 3043 4.327680 AGTTCAAGCCTGTACTCAATTCC 58.672 43.478 0.00 0.00 27.64 3.01
2903 3044 4.393371 GGAGTTCAAGCCTGTACTCAATTC 59.607 45.833 19.83 3.29 46.45 2.17
2904 3045 4.042187 AGGAGTTCAAGCCTGTACTCAATT 59.958 41.667 19.83 6.00 46.45 2.32
2905 3046 3.584848 AGGAGTTCAAGCCTGTACTCAAT 59.415 43.478 19.83 8.29 46.45 2.57
2906 3047 2.972713 AGGAGTTCAAGCCTGTACTCAA 59.027 45.455 19.83 0.00 46.45 3.02
2907 3048 2.300152 CAGGAGTTCAAGCCTGTACTCA 59.700 50.000 19.83 0.00 46.45 3.41
2908 3049 2.966050 CAGGAGTTCAAGCCTGTACTC 58.034 52.381 12.35 12.35 44.85 2.59
2931 3072 5.256474 CCACTCTCCATACCACTCATTTTT 58.744 41.667 0.00 0.00 0.00 1.94
2932 3073 4.324563 CCCACTCTCCATACCACTCATTTT 60.325 45.833 0.00 0.00 0.00 1.82
2933 3074 3.200825 CCCACTCTCCATACCACTCATTT 59.799 47.826 0.00 0.00 0.00 2.32
2934 3075 2.774234 CCCACTCTCCATACCACTCATT 59.226 50.000 0.00 0.00 0.00 2.57
2935 3076 2.023015 TCCCACTCTCCATACCACTCAT 60.023 50.000 0.00 0.00 0.00 2.90
2936 3077 1.361197 TCCCACTCTCCATACCACTCA 59.639 52.381 0.00 0.00 0.00 3.41
2937 3078 2.160721 TCCCACTCTCCATACCACTC 57.839 55.000 0.00 0.00 0.00 3.51
2938 3079 2.642171 TTCCCACTCTCCATACCACT 57.358 50.000 0.00 0.00 0.00 4.00
2939 3080 3.054361 ACATTTCCCACTCTCCATACCAC 60.054 47.826 0.00 0.00 0.00 4.16
2940 3081 3.189606 ACATTTCCCACTCTCCATACCA 58.810 45.455 0.00 0.00 0.00 3.25
2941 3082 3.933861 ACATTTCCCACTCTCCATACC 57.066 47.619 0.00 0.00 0.00 2.73
2942 3083 6.650120 TCTTTACATTTCCCACTCTCCATAC 58.350 40.000 0.00 0.00 0.00 2.39
2943 3084 6.443849 ACTCTTTACATTTCCCACTCTCCATA 59.556 38.462 0.00 0.00 0.00 2.74
2944 3085 5.251700 ACTCTTTACATTTCCCACTCTCCAT 59.748 40.000 0.00 0.00 0.00 3.41
2945 3086 4.597507 ACTCTTTACATTTCCCACTCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
2946 3087 5.167303 ACTCTTTACATTTCCCACTCTCC 57.833 43.478 0.00 0.00 0.00 3.71
2947 3088 6.987404 GGATACTCTTTACATTTCCCACTCTC 59.013 42.308 0.00 0.00 0.00 3.20
2948 3089 6.443849 TGGATACTCTTTACATTTCCCACTCT 59.556 38.462 0.00 0.00 37.61 3.24
2949 3090 6.650120 TGGATACTCTTTACATTTCCCACTC 58.350 40.000 0.00 0.00 37.61 3.51
2950 3091 6.636454 TGGATACTCTTTACATTTCCCACT 57.364 37.500 0.00 0.00 37.61 4.00
2951 3092 7.696992 TTTGGATACTCTTTACATTTCCCAC 57.303 36.000 0.00 0.00 37.61 4.61
2952 3093 7.559897 GGATTTGGATACTCTTTACATTTCCCA 59.440 37.037 0.00 0.00 37.61 4.37
2953 3094 7.780271 AGGATTTGGATACTCTTTACATTTCCC 59.220 37.037 0.00 0.00 37.61 3.97
2954 3095 8.753497 AGGATTTGGATACTCTTTACATTTCC 57.247 34.615 0.00 0.00 37.61 3.13
2956 3097 8.893727 CGAAGGATTTGGATACTCTTTACATTT 58.106 33.333 0.00 0.00 37.61 2.32
2957 3098 8.047310 ACGAAGGATTTGGATACTCTTTACATT 58.953 33.333 0.00 0.00 32.29 2.71
2958 3099 7.495934 CACGAAGGATTTGGATACTCTTTACAT 59.504 37.037 0.00 0.00 32.29 2.29
2959 3100 6.816640 CACGAAGGATTTGGATACTCTTTACA 59.183 38.462 0.00 0.00 32.29 2.41
2960 3101 7.010275 GTCACGAAGGATTTGGATACTCTTTAC 59.990 40.741 0.00 0.00 32.29 2.01
2961 3102 7.039882 GTCACGAAGGATTTGGATACTCTTTA 58.960 38.462 0.00 0.00 32.29 1.85
2962 3103 5.875359 GTCACGAAGGATTTGGATACTCTTT 59.125 40.000 0.00 0.00 32.29 2.52
2963 3104 5.046591 TGTCACGAAGGATTTGGATACTCTT 60.047 40.000 0.00 0.00 32.29 2.85
2964 3105 4.466370 TGTCACGAAGGATTTGGATACTCT 59.534 41.667 0.00 0.00 32.29 3.24
2965 3106 4.755411 TGTCACGAAGGATTTGGATACTC 58.245 43.478 0.00 0.00 32.29 2.59
2966 3107 4.819105 TGTCACGAAGGATTTGGATACT 57.181 40.909 0.00 0.00 32.29 2.12
2967 3108 4.935808 AGTTGTCACGAAGGATTTGGATAC 59.064 41.667 0.00 0.00 32.29 2.24
2968 3109 4.935205 CAGTTGTCACGAAGGATTTGGATA 59.065 41.667 0.00 0.00 32.29 2.59
2969 3110 3.753272 CAGTTGTCACGAAGGATTTGGAT 59.247 43.478 0.00 0.00 32.29 3.41
2970 3111 3.138304 CAGTTGTCACGAAGGATTTGGA 58.862 45.455 0.00 0.00 32.29 3.53
2971 3112 2.226437 CCAGTTGTCACGAAGGATTTGG 59.774 50.000 0.00 0.00 32.29 3.28
2972 3113 3.138304 TCCAGTTGTCACGAAGGATTTG 58.862 45.455 0.00 0.00 34.94 2.32
2973 3114 3.485463 TCCAGTTGTCACGAAGGATTT 57.515 42.857 0.00 0.00 0.00 2.17
2974 3115 3.703001 ATCCAGTTGTCACGAAGGATT 57.297 42.857 0.00 0.00 33.00 3.01
2975 3116 3.118738 GGTATCCAGTTGTCACGAAGGAT 60.119 47.826 5.75 5.75 37.56 3.24
2976 3117 2.232941 GGTATCCAGTTGTCACGAAGGA 59.767 50.000 0.00 0.00 0.00 3.36
2977 3118 2.233922 AGGTATCCAGTTGTCACGAAGG 59.766 50.000 0.00 0.00 0.00 3.46
2978 3119 3.512680 GAGGTATCCAGTTGTCACGAAG 58.487 50.000 0.00 0.00 0.00 3.79
2979 3120 2.094906 CGAGGTATCCAGTTGTCACGAA 60.095 50.000 0.00 0.00 0.00 3.85
2980 3121 1.471287 CGAGGTATCCAGTTGTCACGA 59.529 52.381 0.00 0.00 0.00 4.35
2981 3122 1.471287 TCGAGGTATCCAGTTGTCACG 59.529 52.381 0.00 0.00 0.00 4.35
2982 3123 2.230508 TGTCGAGGTATCCAGTTGTCAC 59.769 50.000 0.00 0.00 0.00 3.67
2983 3124 2.521126 TGTCGAGGTATCCAGTTGTCA 58.479 47.619 0.00 0.00 0.00 3.58
2984 3125 3.587797 TTGTCGAGGTATCCAGTTGTC 57.412 47.619 0.00 0.00 0.00 3.18
2985 3126 3.769844 AGATTGTCGAGGTATCCAGTTGT 59.230 43.478 0.00 0.00 0.00 3.32
2986 3127 4.115516 CAGATTGTCGAGGTATCCAGTTG 58.884 47.826 0.00 0.00 0.00 3.16
2987 3128 3.133003 CCAGATTGTCGAGGTATCCAGTT 59.867 47.826 0.00 0.00 0.00 3.16
2988 3129 2.695666 CCAGATTGTCGAGGTATCCAGT 59.304 50.000 0.00 0.00 0.00 4.00
2989 3130 2.546795 GCCAGATTGTCGAGGTATCCAG 60.547 54.545 0.00 0.00 0.00 3.86
2990 3131 1.412710 GCCAGATTGTCGAGGTATCCA 59.587 52.381 0.00 0.00 0.00 3.41
2991 3132 1.270358 GGCCAGATTGTCGAGGTATCC 60.270 57.143 0.00 0.00 0.00 2.59
2992 3133 1.689273 AGGCCAGATTGTCGAGGTATC 59.311 52.381 5.01 0.00 0.00 2.24
2993 3134 1.794714 AGGCCAGATTGTCGAGGTAT 58.205 50.000 5.01 0.00 0.00 2.73
2994 3135 1.568504 AAGGCCAGATTGTCGAGGTA 58.431 50.000 5.01 0.00 0.00 3.08
2995 3136 0.693049 AAAGGCCAGATTGTCGAGGT 59.307 50.000 5.01 0.00 0.00 3.85
2996 3137 1.373570 GAAAGGCCAGATTGTCGAGG 58.626 55.000 5.01 0.00 0.00 4.63
2997 3138 1.339055 TGGAAAGGCCAGATTGTCGAG 60.339 52.381 5.01 0.00 43.33 4.04
2998 3139 0.690192 TGGAAAGGCCAGATTGTCGA 59.310 50.000 5.01 0.00 43.33 4.20
2999 3140 3.248043 TGGAAAGGCCAGATTGTCG 57.752 52.632 5.01 0.00 43.33 4.35
3008 3149 3.565307 TCATGGATTGTATGGAAAGGCC 58.435 45.455 0.00 0.00 37.10 5.19
3009 3150 5.596836 TTTCATGGATTGTATGGAAAGGC 57.403 39.130 0.00 0.00 0.00 4.35
3010 3151 7.174107 AGTTTTCATGGATTGTATGGAAAGG 57.826 36.000 0.00 0.00 34.56 3.11
3011 3152 9.177608 TCTAGTTTTCATGGATTGTATGGAAAG 57.822 33.333 0.00 0.00 34.56 2.62
3012 3153 9.527157 TTCTAGTTTTCATGGATTGTATGGAAA 57.473 29.630 0.00 0.00 32.13 3.13
3013 3154 9.177608 CTTCTAGTTTTCATGGATTGTATGGAA 57.822 33.333 0.00 0.00 0.00 3.53
3014 3155 8.328758 ACTTCTAGTTTTCATGGATTGTATGGA 58.671 33.333 0.00 0.00 0.00 3.41
3015 3156 8.511604 ACTTCTAGTTTTCATGGATTGTATGG 57.488 34.615 0.00 0.00 0.00 2.74
3016 3157 8.331022 CGACTTCTAGTTTTCATGGATTGTATG 58.669 37.037 0.00 0.00 0.00 2.39
3017 3158 7.495934 CCGACTTCTAGTTTTCATGGATTGTAT 59.504 37.037 0.00 0.00 0.00 2.29
3018 3159 6.816640 CCGACTTCTAGTTTTCATGGATTGTA 59.183 38.462 0.00 0.00 0.00 2.41
3019 3160 5.643777 CCGACTTCTAGTTTTCATGGATTGT 59.356 40.000 0.00 0.00 0.00 2.71
3020 3161 5.447818 GCCGACTTCTAGTTTTCATGGATTG 60.448 44.000 0.00 0.00 0.00 2.67
3021 3162 4.636206 GCCGACTTCTAGTTTTCATGGATT 59.364 41.667 0.00 0.00 0.00 3.01
3022 3163 4.080863 AGCCGACTTCTAGTTTTCATGGAT 60.081 41.667 0.00 0.00 0.00 3.41
3023 3164 3.260884 AGCCGACTTCTAGTTTTCATGGA 59.739 43.478 0.00 0.00 0.00 3.41
3024 3165 3.600388 AGCCGACTTCTAGTTTTCATGG 58.400 45.455 0.00 0.00 0.00 3.66
3025 3166 6.100004 TCTAAGCCGACTTCTAGTTTTCATG 58.900 40.000 0.00 0.00 37.33 3.07
3026 3167 6.282199 TCTAAGCCGACTTCTAGTTTTCAT 57.718 37.500 0.00 0.00 37.33 2.57
3027 3168 5.717078 TCTAAGCCGACTTCTAGTTTTCA 57.283 39.130 0.00 0.00 37.33 2.69
3028 3169 5.520649 CCATCTAAGCCGACTTCTAGTTTTC 59.479 44.000 0.00 0.00 37.33 2.29
3029 3170 5.420409 CCATCTAAGCCGACTTCTAGTTTT 58.580 41.667 0.00 0.00 37.33 2.43
3030 3171 4.141914 CCCATCTAAGCCGACTTCTAGTTT 60.142 45.833 0.00 0.00 37.33 2.66
3031 3172 3.385111 CCCATCTAAGCCGACTTCTAGTT 59.615 47.826 0.00 0.00 37.33 2.24
3032 3173 2.959707 CCCATCTAAGCCGACTTCTAGT 59.040 50.000 0.00 0.00 37.33 2.57
3033 3174 2.959707 ACCCATCTAAGCCGACTTCTAG 59.040 50.000 0.00 0.00 37.33 2.43
3034 3175 3.028094 ACCCATCTAAGCCGACTTCTA 57.972 47.619 0.00 0.00 37.33 2.10
3035 3176 1.867363 ACCCATCTAAGCCGACTTCT 58.133 50.000 0.00 0.00 37.33 2.85
3036 3177 3.814005 TTACCCATCTAAGCCGACTTC 57.186 47.619 0.00 0.00 37.33 3.01
3037 3178 3.370209 GGTTTACCCATCTAAGCCGACTT 60.370 47.826 0.00 0.00 40.07 3.01
3038 3179 2.169978 GGTTTACCCATCTAAGCCGACT 59.830 50.000 0.00 0.00 0.00 4.18
3039 3180 2.093341 TGGTTTACCCATCTAAGCCGAC 60.093 50.000 0.00 0.00 38.72 4.79
3040 3181 2.169769 CTGGTTTACCCATCTAAGCCGA 59.830 50.000 0.00 0.00 44.15 5.54
3041 3182 2.093128 ACTGGTTTACCCATCTAAGCCG 60.093 50.000 0.00 0.00 44.15 5.52
3042 3183 3.646736 ACTGGTTTACCCATCTAAGCC 57.353 47.619 0.00 0.00 44.15 4.35
3043 3184 4.332828 ACAACTGGTTTACCCATCTAAGC 58.667 43.478 0.00 0.00 44.15 3.09
3044 3185 5.335661 GCAACAACTGGTTTACCCATCTAAG 60.336 44.000 0.00 0.00 44.15 2.18
3045 3186 4.521256 GCAACAACTGGTTTACCCATCTAA 59.479 41.667 0.00 0.00 44.15 2.10
3046 3187 4.076394 GCAACAACTGGTTTACCCATCTA 58.924 43.478 0.00 0.00 44.15 1.98
3047 3188 2.890945 GCAACAACTGGTTTACCCATCT 59.109 45.455 0.00 0.00 44.15 2.90
3048 3189 2.890945 AGCAACAACTGGTTTACCCATC 59.109 45.455 0.00 0.00 44.15 3.51
3049 3190 2.957474 AGCAACAACTGGTTTACCCAT 58.043 42.857 0.00 0.00 44.15 4.00
3050 3191 2.445682 AGCAACAACTGGTTTACCCA 57.554 45.000 0.00 0.00 42.51 4.51
3051 3192 2.035449 GGAAGCAACAACTGGTTTACCC 59.965 50.000 0.00 0.00 45.72 3.69
3052 3193 2.035449 GGGAAGCAACAACTGGTTTACC 59.965 50.000 0.00 0.00 45.72 2.85
3053 3194 2.035449 GGGGAAGCAACAACTGGTTTAC 59.965 50.000 0.00 0.00 45.72 2.01
3054 3195 2.312390 GGGGAAGCAACAACTGGTTTA 58.688 47.619 0.00 0.00 45.72 2.01
3055 3196 1.119684 GGGGAAGCAACAACTGGTTT 58.880 50.000 0.00 0.00 45.72 3.27
3057 3198 0.188342 ATGGGGAAGCAACAACTGGT 59.812 50.000 0.00 0.00 37.35 4.00
3058 3199 1.273327 GAATGGGGAAGCAACAACTGG 59.727 52.381 0.00 0.00 0.00 4.00
3059 3200 2.242043 AGAATGGGGAAGCAACAACTG 58.758 47.619 0.00 0.00 0.00 3.16
3060 3201 2.683211 AGAATGGGGAAGCAACAACT 57.317 45.000 0.00 0.00 0.00 3.16
3061 3202 4.220602 ACATTAGAATGGGGAAGCAACAAC 59.779 41.667 7.16 0.00 40.70 3.32
3062 3203 4.415596 ACATTAGAATGGGGAAGCAACAA 58.584 39.130 7.16 0.00 40.70 2.83
3063 3204 4.016444 GACATTAGAATGGGGAAGCAACA 58.984 43.478 7.16 0.00 40.70 3.33
3064 3205 4.096984 CAGACATTAGAATGGGGAAGCAAC 59.903 45.833 7.16 0.00 40.70 4.17
3065 3206 4.272489 CAGACATTAGAATGGGGAAGCAA 58.728 43.478 7.16 0.00 40.70 3.91
3066 3207 3.371917 CCAGACATTAGAATGGGGAAGCA 60.372 47.826 7.16 0.00 40.70 3.91
3067 3208 3.117888 TCCAGACATTAGAATGGGGAAGC 60.118 47.826 7.16 0.00 40.70 3.86
3068 3209 4.778213 TCCAGACATTAGAATGGGGAAG 57.222 45.455 7.16 0.00 40.70 3.46
3069 3210 4.290985 TGTTCCAGACATTAGAATGGGGAA 59.709 41.667 15.50 15.50 40.07 3.97
3070 3211 3.849574 TGTTCCAGACATTAGAATGGGGA 59.150 43.478 7.16 7.58 40.70 4.81
3071 3212 4.235079 TGTTCCAGACATTAGAATGGGG 57.765 45.455 7.16 5.61 40.70 4.96
3072 3213 4.096984 GCTTGTTCCAGACATTAGAATGGG 59.903 45.833 7.16 0.00 40.70 4.00
3073 3214 4.701651 TGCTTGTTCCAGACATTAGAATGG 59.298 41.667 7.16 0.00 40.70 3.16
3074 3215 5.645067 TCTGCTTGTTCCAGACATTAGAATG 59.355 40.000 0.61 0.61 38.26 2.67
3075 3216 5.809001 TCTGCTTGTTCCAGACATTAGAAT 58.191 37.500 0.00 0.00 38.26 2.40
3076 3217 5.227569 TCTGCTTGTTCCAGACATTAGAA 57.772 39.130 0.00 0.00 38.26 2.10
3077 3218 4.890158 TCTGCTTGTTCCAGACATTAGA 57.110 40.909 0.00 0.00 38.26 2.10
3078 3219 5.731599 GATCTGCTTGTTCCAGACATTAG 57.268 43.478 0.00 0.00 41.68 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.