Multiple sequence alignment - TraesCS7B01G101200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G101200 chr7B 100.000 7425 0 0 560 7984 115410935 115403511 0.000000e+00 13712.0
1 TraesCS7B01G101200 chr7B 89.589 1095 105 5 2929 4014 253599708 253598614 0.000000e+00 1382.0
2 TraesCS7B01G101200 chr7B 85.095 738 91 12 6388 7112 681553744 681554475 0.000000e+00 736.0
3 TraesCS7B01G101200 chr7B 81.358 810 110 25 6310 7112 547344517 547345292 8.800000e-174 621.0
4 TraesCS7B01G101200 chr7B 87.560 209 24 2 4063 4271 547343327 547343533 2.880000e-59 241.0
5 TraesCS7B01G101200 chr7B 100.000 112 0 0 1 112 115411494 115411383 2.920000e-49 207.0
6 TraesCS7B01G101200 chr7B 87.500 88 11 0 7122 7209 115355721 115355634 1.420000e-17 102.0
7 TraesCS7B01G101200 chr7B 97.436 39 1 0 4086 4124 442079459 442079497 5.170000e-07 67.6
8 TraesCS7B01G101200 chr7D 96.460 2034 46 10 921 2931 153640584 153638554 0.000000e+00 3334.0
9 TraesCS7B01G101200 chr7D 93.207 1266 44 13 5951 7209 153637721 153636491 0.000000e+00 1823.0
10 TraesCS7B01G101200 chr7D 94.416 394 20 2 7591 7984 153635988 153635597 8.860000e-169 604.0
11 TraesCS7B01G101200 chr7D 95.870 339 8 2 4225 4557 153638210 153637872 1.960000e-150 544.0
12 TraesCS7B01G101200 chr7D 95.714 210 9 0 4019 4228 153638558 153638349 9.920000e-89 339.0
13 TraesCS7B01G101200 chr7D 92.818 181 10 2 7395 7575 153636215 153636038 7.950000e-65 259.0
14 TraesCS7B01G101200 chr7D 93.678 174 10 1 7225 7397 153636433 153636260 7.950000e-65 259.0
15 TraesCS7B01G101200 chr7D 94.872 78 4 0 4553 4630 153637793 153637716 1.090000e-23 122.0
16 TraesCS7B01G101200 chr1B 99.471 1323 7 0 4629 5951 655769507 655770829 0.000000e+00 2405.0
17 TraesCS7B01G101200 chr1B 99.395 1323 8 0 4629 5951 354984740 354986062 0.000000e+00 2399.0
18 TraesCS7B01G101200 chr1B 99.247 1328 10 0 4624 5951 641616883 641618210 0.000000e+00 2398.0
19 TraesCS7B01G101200 chr1B 98.379 1357 18 4 4597 5951 549054471 549055825 0.000000e+00 2381.0
20 TraesCS7B01G101200 chr1B 89.580 1094 105 5 2934 4019 257143160 257144252 0.000000e+00 1380.0
21 TraesCS7B01G101200 chr1B 89.393 1103 106 7 2925 4019 226222103 226223202 0.000000e+00 1378.0
22 TraesCS7B01G101200 chr1B 89.315 1095 109 4 2932 4018 257166803 257167897 0.000000e+00 1367.0
23 TraesCS7B01G101200 chr1B 90.769 65 5 1 4063 4126 44625177 44625241 1.430000e-12 86.1
24 TraesCS7B01G101200 chr1B 97.561 41 1 0 4086 4126 40975270 40975310 4.000000e-08 71.3
25 TraesCS7B01G101200 chr6B 99.249 1331 8 2 4623 5951 58829492 58830822 0.000000e+00 2401.0
26 TraesCS7B01G101200 chr6B 91.241 1096 87 5 2930 4019 601938344 601937252 0.000000e+00 1483.0
27 TraesCS7B01G101200 chr5A 99.395 1323 8 0 4629 5951 648815620 648816942 0.000000e+00 2399.0
28 TraesCS7B01G101200 chr4B 99.395 1323 8 0 4629 5951 5372867 5374189 0.000000e+00 2399.0
29 TraesCS7B01G101200 chr4B 99.395 1323 8 0 4629 5951 90723722 90725044 0.000000e+00 2399.0
30 TraesCS7B01G101200 chr4B 90.009 1091 101 4 2934 4018 373841778 373840690 0.000000e+00 1404.0
31 TraesCS7B01G101200 chr4B 87.023 262 31 3 2661 2919 75833527 75833788 7.840000e-75 292.0
32 TraesCS7B01G101200 chr4B 85.401 274 37 3 2661 2931 6976485 6976212 1.700000e-71 281.0
33 TraesCS7B01G101200 chr4B 94.643 56 2 1 4072 4126 6976140 6976085 1.430000e-12 86.1
34 TraesCS7B01G101200 chr4B 90.769 65 5 1 4063 4126 75833863 75833927 1.430000e-12 86.1
35 TraesCS7B01G101200 chr1A 99.395 1323 8 0 4629 5951 517045162 517046484 0.000000e+00 2399.0
36 TraesCS7B01G101200 chr1A 81.863 204 33 2 6550 6753 555126103 555126302 1.380000e-37 169.0
37 TraesCS7B01G101200 chr1A 77.551 147 29 3 662 807 579096858 579097001 1.430000e-12 86.1
38 TraesCS7B01G101200 chr2D 86.676 1471 155 24 955 2393 21825198 21826659 0.000000e+00 1592.0
39 TraesCS7B01G101200 chr2D 82.226 1204 164 30 1091 2267 30478971 30480151 0.000000e+00 992.0
40 TraesCS7B01G101200 chr2D 81.079 1131 186 18 1165 2280 46389627 46388510 0.000000e+00 878.0
41 TraesCS7B01G101200 chr2D 85.073 891 89 26 6242 7112 21828207 21829073 0.000000e+00 869.0
42 TraesCS7B01G101200 chr2D 84.460 695 95 9 1159 1847 30477387 30478074 0.000000e+00 673.0
43 TraesCS7B01G101200 chr2D 87.056 479 51 5 2464 2931 21826981 21827459 1.530000e-146 531.0
44 TraesCS7B01G101200 chr2D 84.000 75 11 1 4558 4631 46374816 46374742 4.000000e-08 71.3
45 TraesCS7B01G101200 chr2B 90.210 1093 99 5 2932 4018 447262635 447263725 0.000000e+00 1419.0
46 TraesCS7B01G101200 chr2B 85.039 1143 151 15 1165 2298 49981355 49980224 0.000000e+00 1146.0
47 TraesCS7B01G101200 chr2B 86.111 1080 120 15 972 2028 34799035 34797963 0.000000e+00 1136.0
48 TraesCS7B01G101200 chr2B 82.155 1132 171 22 1165 2280 73390011 73388895 0.000000e+00 942.0
49 TraesCS7B01G101200 chr2B 81.504 838 109 24 6293 7111 34795761 34794951 0.000000e+00 647.0
50 TraesCS7B01G101200 chr2B 80.929 818 113 25 6290 7090 35066920 35067711 2.460000e-169 606.0
51 TraesCS7B01G101200 chr2B 80.897 780 105 22 1492 2250 49987900 49987144 6.950000e-160 575.0
52 TraesCS7B01G101200 chr2B 77.157 985 111 56 2007 2931 34797949 34797019 1.210000e-127 468.0
53 TraesCS7B01G101200 chr2B 83.333 276 33 5 2658 2931 35066065 35066329 8.000000e-60 243.0
54 TraesCS7B01G101200 chr3B 90.018 1092 101 4 2934 4019 350320575 350321664 0.000000e+00 1406.0
55 TraesCS7B01G101200 chr3B 95.122 41 2 0 4086 4126 815730243 815730203 1.860000e-06 65.8
56 TraesCS7B01G101200 chr5B 89.614 1088 106 3 2938 4018 481240754 481239667 0.000000e+00 1376.0
57 TraesCS7B01G101200 chr5B 84.672 274 39 3 2661 2931 84142002 84141729 3.670000e-68 270.0
58 TraesCS7B01G101200 chr5B 92.857 56 3 1 4072 4126 84141657 84141602 6.640000e-11 80.5
59 TraesCS7B01G101200 chr2A 83.387 1240 165 27 1091 2299 32503466 32504695 0.000000e+00 1110.0
60 TraesCS7B01G101200 chr2A 82.420 1132 169 18 1165 2280 49927379 49926262 0.000000e+00 961.0
61 TraesCS7B01G101200 chr2A 82.516 1121 154 25 1159 2250 32497359 32498466 0.000000e+00 946.0
62 TraesCS7B01G101200 chr2A 85.751 386 39 5 1048 1420 23904625 23905007 2.090000e-105 394.0
63 TraesCS7B01G101200 chrUn 81.601 837 109 24 6293 7111 318350525 318349716 0.000000e+00 651.0
64 TraesCS7B01G101200 chrUn 85.846 544 69 8 6570 7111 323067743 323067206 8.990000e-159 571.0
65 TraesCS7B01G101200 chrUn 84.775 289 38 4 1993 2275 12660843 12661131 1.310000e-72 285.0
66 TraesCS7B01G101200 chrUn 85.500 200 26 3 2733 2931 340824382 340824579 1.050000e-48 206.0
67 TraesCS7B01G101200 chr7A 94.937 395 12 6 7591 7984 155513458 155513071 5.300000e-171 612.0
68 TraesCS7B01G101200 chr7A 96.774 124 4 0 7452 7575 155513631 155513508 2.920000e-49 207.0
69 TraesCS7B01G101200 chr7A 85.500 200 26 3 2733 2931 2147842 2147645 1.050000e-48 206.0
70 TraesCS7B01G101200 chr7A 85.500 200 26 3 2733 2931 2167768 2167571 1.050000e-48 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G101200 chr7B 115403511 115411494 7983 True 6959.500000 13712 100.000000 1 7984 2 chr7B.!!$R3 7983
1 TraesCS7B01G101200 chr7B 253598614 253599708 1094 True 1382.000000 1382 89.589000 2929 4014 1 chr7B.!!$R2 1085
2 TraesCS7B01G101200 chr7B 681553744 681554475 731 False 736.000000 736 85.095000 6388 7112 1 chr7B.!!$F2 724
3 TraesCS7B01G101200 chr7B 547343327 547345292 1965 False 431.000000 621 84.459000 4063 7112 2 chr7B.!!$F3 3049
4 TraesCS7B01G101200 chr7D 153635597 153640584 4987 True 910.500000 3334 94.629375 921 7984 8 chr7D.!!$R1 7063
5 TraesCS7B01G101200 chr1B 655769507 655770829 1322 False 2405.000000 2405 99.471000 4629 5951 1 chr1B.!!$F9 1322
6 TraesCS7B01G101200 chr1B 354984740 354986062 1322 False 2399.000000 2399 99.395000 4629 5951 1 chr1B.!!$F6 1322
7 TraesCS7B01G101200 chr1B 641616883 641618210 1327 False 2398.000000 2398 99.247000 4624 5951 1 chr1B.!!$F8 1327
8 TraesCS7B01G101200 chr1B 549054471 549055825 1354 False 2381.000000 2381 98.379000 4597 5951 1 chr1B.!!$F7 1354
9 TraesCS7B01G101200 chr1B 257143160 257144252 1092 False 1380.000000 1380 89.580000 2934 4019 1 chr1B.!!$F4 1085
10 TraesCS7B01G101200 chr1B 226222103 226223202 1099 False 1378.000000 1378 89.393000 2925 4019 1 chr1B.!!$F3 1094
11 TraesCS7B01G101200 chr1B 257166803 257167897 1094 False 1367.000000 1367 89.315000 2932 4018 1 chr1B.!!$F5 1086
12 TraesCS7B01G101200 chr6B 58829492 58830822 1330 False 2401.000000 2401 99.249000 4623 5951 1 chr6B.!!$F1 1328
13 TraesCS7B01G101200 chr6B 601937252 601938344 1092 True 1483.000000 1483 91.241000 2930 4019 1 chr6B.!!$R1 1089
14 TraesCS7B01G101200 chr5A 648815620 648816942 1322 False 2399.000000 2399 99.395000 4629 5951 1 chr5A.!!$F1 1322
15 TraesCS7B01G101200 chr4B 5372867 5374189 1322 False 2399.000000 2399 99.395000 4629 5951 1 chr4B.!!$F1 1322
16 TraesCS7B01G101200 chr4B 90723722 90725044 1322 False 2399.000000 2399 99.395000 4629 5951 1 chr4B.!!$F2 1322
17 TraesCS7B01G101200 chr4B 373840690 373841778 1088 True 1404.000000 1404 90.009000 2934 4018 1 chr4B.!!$R1 1084
18 TraesCS7B01G101200 chr1A 517045162 517046484 1322 False 2399.000000 2399 99.395000 4629 5951 1 chr1A.!!$F1 1322
19 TraesCS7B01G101200 chr2D 21825198 21829073 3875 False 997.333333 1592 86.268333 955 7112 3 chr2D.!!$F1 6157
20 TraesCS7B01G101200 chr2D 46388510 46389627 1117 True 878.000000 878 81.079000 1165 2280 1 chr2D.!!$R2 1115
21 TraesCS7B01G101200 chr2D 30477387 30480151 2764 False 832.500000 992 83.343000 1091 2267 2 chr2D.!!$F2 1176
22 TraesCS7B01G101200 chr2B 447262635 447263725 1090 False 1419.000000 1419 90.210000 2932 4018 1 chr2B.!!$F1 1086
23 TraesCS7B01G101200 chr2B 49980224 49981355 1131 True 1146.000000 1146 85.039000 1165 2298 1 chr2B.!!$R1 1133
24 TraesCS7B01G101200 chr2B 73388895 73390011 1116 True 942.000000 942 82.155000 1165 2280 1 chr2B.!!$R3 1115
25 TraesCS7B01G101200 chr2B 34794951 34799035 4084 True 750.333333 1136 81.590667 972 7111 3 chr2B.!!$R4 6139
26 TraesCS7B01G101200 chr2B 49987144 49987900 756 True 575.000000 575 80.897000 1492 2250 1 chr2B.!!$R2 758
27 TraesCS7B01G101200 chr2B 35066065 35067711 1646 False 424.500000 606 82.131000 2658 7090 2 chr2B.!!$F2 4432
28 TraesCS7B01G101200 chr3B 350320575 350321664 1089 False 1406.000000 1406 90.018000 2934 4019 1 chr3B.!!$F1 1085
29 TraesCS7B01G101200 chr5B 481239667 481240754 1087 True 1376.000000 1376 89.614000 2938 4018 1 chr5B.!!$R1 1080
30 TraesCS7B01G101200 chr2A 32503466 32504695 1229 False 1110.000000 1110 83.387000 1091 2299 1 chr2A.!!$F3 1208
31 TraesCS7B01G101200 chr2A 49926262 49927379 1117 True 961.000000 961 82.420000 1165 2280 1 chr2A.!!$R1 1115
32 TraesCS7B01G101200 chr2A 32497359 32498466 1107 False 946.000000 946 82.516000 1159 2250 1 chr2A.!!$F2 1091
33 TraesCS7B01G101200 chrUn 318349716 318350525 809 True 651.000000 651 81.601000 6293 7111 1 chrUn.!!$R1 818
34 TraesCS7B01G101200 chrUn 323067206 323067743 537 True 571.000000 571 85.846000 6570 7111 1 chrUn.!!$R2 541
35 TraesCS7B01G101200 chr7A 155513071 155513631 560 True 409.500000 612 95.855500 7452 7984 2 chr7A.!!$R3 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 709 0.032815 TTGACTGAATGCCGACGTGA 59.967 50.000 0.00 0.00 0.00 4.35 F
709 710 0.032815 TGACTGAATGCCGACGTGAA 59.967 50.000 0.00 0.00 0.00 3.18 F
739 740 0.182061 ATGCGTCTACCTCCTACCGA 59.818 55.000 0.00 0.00 0.00 4.69 F
887 888 0.249573 GTGTTGGAAGTCGGAACCGA 60.250 55.000 12.04 12.04 46.87 4.69 F
976 983 1.001974 GAAGCCCCAAATCCACAAACC 59.998 52.381 0.00 0.00 0.00 3.27 F
1419 1444 1.302033 CTTCTGCTGCGTCCACCTT 60.302 57.895 0.00 0.00 0.00 3.50 F
3053 5137 0.877649 CTGAAGCCACGGGATGATCG 60.878 60.000 0.00 0.00 0.00 3.69 F
4019 6119 1.086696 GTGTCATTCCCACCGACATG 58.913 55.000 0.00 0.00 41.39 3.21 F
4020 6120 0.676466 TGTCATTCCCACCGACATGC 60.676 55.000 0.00 0.00 34.83 4.06 F
4420 6694 1.207089 CCGGTTCCAGACAGCTAATGA 59.793 52.381 0.00 0.00 0.00 2.57 F
6407 9146 1.752498 AGTGACAACACCGACACAGTA 59.248 47.619 0.00 0.00 46.99 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 3503 1.243902 GGCGATGTCCTCCAAAACAA 58.756 50.000 0.00 0.00 0.00 2.83 R
1810 3508 2.264480 CACGGCGATGTCCTCCAA 59.736 61.111 16.62 0.00 0.00 3.53 R
2450 4482 3.201290 CATGTAGATGGTGGCTGAGAAC 58.799 50.000 0.00 0.00 0.00 3.01 R
2617 4673 6.018669 AGCGAGAAACACTAGAACAAGAAAAG 60.019 38.462 0.00 0.00 0.00 2.27 R
2925 5009 0.170339 TCTGTACATCGACACCGCAG 59.830 55.000 0.00 0.00 35.37 5.18 R
3196 5281 0.608035 GGTGATGGAAAACTCGGGCA 60.608 55.000 0.00 0.00 0.00 5.36 R
4021 6121 0.877743 GAGGCTGCAAACTTCAGTCC 59.122 55.000 0.50 0.00 36.88 3.85 R
4924 7308 3.149196 AGCTTGTCCAACATCGTTTGAT 58.851 40.909 0.00 0.00 34.28 2.57 R
5995 8383 4.202274 TGTTCGTAGAAAACACCTGATGGA 60.202 41.667 0.00 0.00 45.90 3.41 R
6419 9159 3.411446 CACAAATCAGCCTACTGGAACA 58.589 45.455 0.00 0.00 44.59 3.18 R
7353 10170 0.097674 GCTGTGCTGCATAGAAACGG 59.902 55.000 27.45 10.01 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.208686 GGTACGGGGCGAGCTGAG 62.209 72.222 0.00 0.00 0.00 3.35
49 50 4.874977 GTACGGGGCGAGCTGAGC 62.875 72.222 0.00 0.00 0.00 4.26
90 91 4.385405 ACAGAGCGAGCTGTGGGC 62.385 66.667 23.07 0.31 46.72 5.36
91 92 4.383861 CAGAGCGAGCTGTGGGCA 62.384 66.667 13.60 0.00 44.79 5.36
92 93 4.079850 AGAGCGAGCTGTGGGCAG 62.080 66.667 0.84 0.00 44.79 4.85
593 594 3.124921 CATGACGTGGGCGGGAAC 61.125 66.667 0.00 0.00 43.45 3.62
594 595 3.319198 ATGACGTGGGCGGGAACT 61.319 61.111 0.00 0.00 43.45 3.01
595 596 3.605749 ATGACGTGGGCGGGAACTG 62.606 63.158 0.00 0.00 43.45 3.16
652 653 3.902086 GGGGACGAGGCGAGCTAC 61.902 72.222 0.00 0.00 0.00 3.58
653 654 4.253257 GGGACGAGGCGAGCTACG 62.253 72.222 11.08 11.08 45.66 3.51
687 688 3.149899 GGAGCTCGCCCATCATATG 57.850 57.895 7.83 0.00 0.00 1.78
688 689 0.322975 GGAGCTCGCCCATCATATGT 59.677 55.000 7.83 0.00 0.00 2.29
689 690 1.271054 GGAGCTCGCCCATCATATGTT 60.271 52.381 7.83 0.00 0.00 2.71
690 691 2.498167 GAGCTCGCCCATCATATGTTT 58.502 47.619 0.00 0.00 0.00 2.83
691 692 2.224606 AGCTCGCCCATCATATGTTTG 58.775 47.619 1.90 2.32 0.00 2.93
692 693 2.158769 AGCTCGCCCATCATATGTTTGA 60.159 45.455 1.90 0.00 0.00 2.69
693 694 2.031682 GCTCGCCCATCATATGTTTGAC 60.032 50.000 1.90 0.00 0.00 3.18
694 695 3.470709 CTCGCCCATCATATGTTTGACT 58.529 45.455 1.90 0.00 0.00 3.41
695 696 3.205338 TCGCCCATCATATGTTTGACTG 58.795 45.455 1.90 0.00 0.00 3.51
696 697 3.118445 TCGCCCATCATATGTTTGACTGA 60.118 43.478 1.90 0.00 0.00 3.41
697 698 3.627123 CGCCCATCATATGTTTGACTGAA 59.373 43.478 1.90 0.00 0.00 3.02
698 699 4.276678 CGCCCATCATATGTTTGACTGAAT 59.723 41.667 1.90 0.00 0.00 2.57
699 700 5.526115 GCCCATCATATGTTTGACTGAATG 58.474 41.667 1.90 0.00 0.00 2.67
700 701 5.526115 CCCATCATATGTTTGACTGAATGC 58.474 41.667 1.90 0.00 0.00 3.56
701 702 5.508489 CCCATCATATGTTTGACTGAATGCC 60.508 44.000 1.90 0.00 0.00 4.40
702 703 4.880886 TCATATGTTTGACTGAATGCCG 57.119 40.909 1.90 0.00 0.00 5.69
703 704 4.512484 TCATATGTTTGACTGAATGCCGA 58.488 39.130 1.90 0.00 0.00 5.54
704 705 4.332543 TCATATGTTTGACTGAATGCCGAC 59.667 41.667 1.90 0.00 0.00 4.79
705 706 0.865111 TGTTTGACTGAATGCCGACG 59.135 50.000 0.00 0.00 0.00 5.12
706 707 0.865769 GTTTGACTGAATGCCGACGT 59.134 50.000 0.00 0.00 0.00 4.34
707 708 0.865111 TTTGACTGAATGCCGACGTG 59.135 50.000 0.00 0.00 0.00 4.49
708 709 0.032815 TTGACTGAATGCCGACGTGA 59.967 50.000 0.00 0.00 0.00 4.35
709 710 0.032815 TGACTGAATGCCGACGTGAA 59.967 50.000 0.00 0.00 0.00 3.18
710 711 0.438830 GACTGAATGCCGACGTGAAC 59.561 55.000 0.00 0.00 0.00 3.18
711 712 0.249699 ACTGAATGCCGACGTGAACA 60.250 50.000 0.00 0.00 0.00 3.18
712 713 1.078709 CTGAATGCCGACGTGAACAT 58.921 50.000 0.00 0.00 0.00 2.71
713 714 0.795698 TGAATGCCGACGTGAACATG 59.204 50.000 0.00 0.00 0.00 3.21
714 715 0.521242 GAATGCCGACGTGAACATGC 60.521 55.000 0.00 0.00 0.00 4.06
715 716 1.233950 AATGCCGACGTGAACATGCA 61.234 50.000 0.00 0.00 0.00 3.96
716 717 1.911293 ATGCCGACGTGAACATGCAC 61.911 55.000 0.00 0.00 35.46 4.57
717 718 2.603247 GCCGACGTGAACATGCACA 61.603 57.895 0.00 0.00 38.69 4.57
718 719 1.938125 CCGACGTGAACATGCACAA 59.062 52.632 0.00 0.00 38.69 3.33
719 720 0.306228 CCGACGTGAACATGCACAAA 59.694 50.000 0.00 0.00 38.69 2.83
720 721 1.268285 CCGACGTGAACATGCACAAAA 60.268 47.619 0.00 0.00 38.69 2.44
721 722 2.604373 CCGACGTGAACATGCACAAAAT 60.604 45.455 0.00 0.00 38.69 1.82
722 723 2.401391 CGACGTGAACATGCACAAAATG 59.599 45.455 0.00 0.00 38.69 2.32
732 733 2.527442 GCACAAAATGCGTCTACCTC 57.473 50.000 0.00 0.00 46.55 3.85
733 734 1.130561 GCACAAAATGCGTCTACCTCC 59.869 52.381 0.00 0.00 46.55 4.30
734 735 2.699954 CACAAAATGCGTCTACCTCCT 58.300 47.619 0.00 0.00 0.00 3.69
735 736 3.857052 CACAAAATGCGTCTACCTCCTA 58.143 45.455 0.00 0.00 0.00 2.94
736 737 3.617263 CACAAAATGCGTCTACCTCCTAC 59.383 47.826 0.00 0.00 0.00 3.18
737 738 3.195661 CAAAATGCGTCTACCTCCTACC 58.804 50.000 0.00 0.00 0.00 3.18
738 739 1.030457 AATGCGTCTACCTCCTACCG 58.970 55.000 0.00 0.00 0.00 4.02
739 740 0.182061 ATGCGTCTACCTCCTACCGA 59.818 55.000 0.00 0.00 0.00 4.69
740 741 0.463295 TGCGTCTACCTCCTACCGAG 60.463 60.000 0.00 0.00 38.46 4.63
741 742 1.784036 GCGTCTACCTCCTACCGAGC 61.784 65.000 0.00 0.00 37.27 5.03
742 743 1.497223 CGTCTACCTCCTACCGAGCG 61.497 65.000 0.00 0.00 37.27 5.03
743 744 1.525535 TCTACCTCCTACCGAGCGC 60.526 63.158 0.00 0.00 37.27 5.92
744 745 1.822613 CTACCTCCTACCGAGCGCA 60.823 63.158 11.47 0.00 37.27 6.09
745 746 2.061182 CTACCTCCTACCGAGCGCAC 62.061 65.000 11.47 0.96 37.27 5.34
746 747 2.547640 TACCTCCTACCGAGCGCACT 62.548 60.000 11.47 0.00 37.27 4.40
747 748 2.103143 CTCCTACCGAGCGCACTG 59.897 66.667 11.47 1.42 0.00 3.66
748 749 2.360726 TCCTACCGAGCGCACTGA 60.361 61.111 11.47 0.00 0.00 3.41
749 750 2.202623 CCTACCGAGCGCACTGAC 60.203 66.667 11.47 0.00 0.00 3.51
750 751 2.202623 CTACCGAGCGCACTGACC 60.203 66.667 11.47 0.00 0.00 4.02
751 752 4.111016 TACCGAGCGCACTGACCG 62.111 66.667 11.47 2.69 0.00 4.79
758 759 3.334751 CGCACTGACCGACGCAAA 61.335 61.111 0.00 0.00 0.00 3.68
759 760 2.667318 CGCACTGACCGACGCAAAT 61.667 57.895 0.00 0.00 0.00 2.32
760 761 1.154413 GCACTGACCGACGCAAATG 60.154 57.895 0.00 0.00 0.00 2.32
761 762 1.497278 CACTGACCGACGCAAATGG 59.503 57.895 0.00 0.00 0.00 3.16
762 763 0.948623 CACTGACCGACGCAAATGGA 60.949 55.000 0.00 0.00 0.00 3.41
763 764 0.250124 ACTGACCGACGCAAATGGAA 60.250 50.000 0.00 0.00 0.00 3.53
764 765 0.871722 CTGACCGACGCAAATGGAAA 59.128 50.000 0.00 0.00 0.00 3.13
765 766 1.265635 CTGACCGACGCAAATGGAAAA 59.734 47.619 0.00 0.00 0.00 2.29
766 767 1.676529 TGACCGACGCAAATGGAAAAA 59.323 42.857 0.00 0.00 0.00 1.94
767 768 2.048498 GACCGACGCAAATGGAAAAAC 58.952 47.619 0.00 0.00 0.00 2.43
768 769 1.049251 CCGACGCAAATGGAAAAACG 58.951 50.000 0.00 0.00 0.00 3.60
769 770 1.049251 CGACGCAAATGGAAAAACGG 58.951 50.000 0.00 0.00 0.00 4.44
770 771 1.334239 CGACGCAAATGGAAAAACGGA 60.334 47.619 0.00 0.00 0.00 4.69
771 772 2.048498 GACGCAAATGGAAAAACGGAC 58.952 47.619 0.00 0.00 0.00 4.79
772 773 1.405821 ACGCAAATGGAAAAACGGACA 59.594 42.857 0.00 0.00 0.00 4.02
773 774 1.784283 CGCAAATGGAAAAACGGACAC 59.216 47.619 0.00 0.00 0.00 3.67
775 776 2.389998 CAAATGGAAAAACGGACACGG 58.610 47.619 0.00 0.00 46.48 4.94
776 777 1.970092 AATGGAAAAACGGACACGGA 58.030 45.000 0.00 0.00 46.48 4.69
777 778 1.232119 ATGGAAAAACGGACACGGAC 58.768 50.000 0.00 0.00 46.48 4.79
778 779 1.152989 TGGAAAAACGGACACGGACG 61.153 55.000 0.00 0.00 46.48 4.79
779 780 1.566077 GAAAAACGGACACGGACGG 59.434 57.895 0.00 0.00 46.48 4.79
780 781 1.834458 GAAAAACGGACACGGACGGG 61.834 60.000 0.00 0.00 46.48 5.28
781 782 4.974989 AAACGGACACGGACGGGC 62.975 66.667 0.00 0.00 46.48 6.13
797 798 3.115892 GCGGACGGACGATGCAAA 61.116 61.111 5.17 0.00 35.47 3.68
798 799 2.776072 CGGACGGACGATGCAAAC 59.224 61.111 0.00 0.00 35.47 2.93
799 800 2.776072 GGACGGACGATGCAAACG 59.224 61.111 13.58 13.58 38.45 3.60
800 801 2.736682 GGACGGACGATGCAAACGG 61.737 63.158 18.02 5.94 35.94 4.44
801 802 1.735198 GACGGACGATGCAAACGGA 60.735 57.895 18.02 0.00 35.94 4.69
802 803 1.952266 GACGGACGATGCAAACGGAC 61.952 60.000 18.02 12.17 35.94 4.79
803 804 2.024868 CGGACGATGCAAACGGACA 61.025 57.895 18.02 0.00 35.94 4.02
804 805 1.561717 CGGACGATGCAAACGGACAA 61.562 55.000 18.02 0.00 35.94 3.18
805 806 0.589223 GGACGATGCAAACGGACAAA 59.411 50.000 18.02 0.00 35.94 2.83
806 807 1.002251 GGACGATGCAAACGGACAAAA 60.002 47.619 18.02 0.00 35.94 2.44
807 808 2.541999 GGACGATGCAAACGGACAAAAA 60.542 45.455 18.02 0.00 35.94 1.94
828 829 5.957842 AAAGCTGATAAAATCGTTGTCCA 57.042 34.783 0.00 0.00 0.00 4.02
829 830 6.515272 AAAGCTGATAAAATCGTTGTCCAT 57.485 33.333 0.00 0.00 0.00 3.41
830 831 6.515272 AAGCTGATAAAATCGTTGTCCATT 57.485 33.333 0.00 0.00 0.00 3.16
831 832 6.515272 AGCTGATAAAATCGTTGTCCATTT 57.485 33.333 0.00 0.00 0.00 2.32
832 833 6.555315 AGCTGATAAAATCGTTGTCCATTTC 58.445 36.000 0.00 0.00 0.00 2.17
833 834 5.452302 GCTGATAAAATCGTTGTCCATTTCG 59.548 40.000 0.00 0.00 0.00 3.46
834 835 5.874831 TGATAAAATCGTTGTCCATTTCGG 58.125 37.500 0.00 0.00 0.00 4.30
835 836 5.413213 TGATAAAATCGTTGTCCATTTCGGT 59.587 36.000 0.00 0.00 35.57 4.69
836 837 3.824414 AAATCGTTGTCCATTTCGGTC 57.176 42.857 0.00 0.00 35.57 4.79
837 838 2.465860 ATCGTTGTCCATTTCGGTCA 57.534 45.000 0.00 0.00 35.57 4.02
838 839 1.790755 TCGTTGTCCATTTCGGTCAG 58.209 50.000 0.00 0.00 34.11 3.51
839 840 0.796312 CGTTGTCCATTTCGGTCAGG 59.204 55.000 0.00 0.00 34.11 3.86
840 841 0.521735 GTTGTCCATTTCGGTCAGGC 59.478 55.000 0.00 0.00 34.11 4.85
841 842 0.608035 TTGTCCATTTCGGTCAGGCC 60.608 55.000 0.00 0.00 34.11 5.19
850 851 4.280019 GGTCAGGCCGTTGGGGTT 62.280 66.667 0.00 0.00 38.44 4.11
851 852 2.983592 GTCAGGCCGTTGGGGTTG 60.984 66.667 0.00 0.00 38.44 3.77
852 853 4.966787 TCAGGCCGTTGGGGTTGC 62.967 66.667 0.00 0.00 38.44 4.17
853 854 4.974721 CAGGCCGTTGGGGTTGCT 62.975 66.667 0.00 0.00 38.44 3.91
854 855 4.660938 AGGCCGTTGGGGTTGCTC 62.661 66.667 0.00 0.00 38.44 4.26
855 856 4.660938 GGCCGTTGGGGTTGCTCT 62.661 66.667 0.00 0.00 38.44 4.09
856 857 2.597510 GCCGTTGGGGTTGCTCTT 60.598 61.111 0.00 0.00 38.44 2.85
857 858 1.302993 GCCGTTGGGGTTGCTCTTA 60.303 57.895 0.00 0.00 38.44 2.10
858 859 1.305930 GCCGTTGGGGTTGCTCTTAG 61.306 60.000 0.00 0.00 38.44 2.18
859 860 1.305930 CCGTTGGGGTTGCTCTTAGC 61.306 60.000 0.00 0.00 42.82 3.09
871 872 3.971032 GCTCTTAGCAAACTTGTGTGT 57.029 42.857 0.00 0.00 41.89 3.72
872 873 4.292977 GCTCTTAGCAAACTTGTGTGTT 57.707 40.909 0.00 0.00 41.89 3.32
873 874 4.037690 GCTCTTAGCAAACTTGTGTGTTG 58.962 43.478 0.00 0.00 41.89 3.33
874 875 4.601019 CTCTTAGCAAACTTGTGTGTTGG 58.399 43.478 0.00 0.00 0.00 3.77
875 876 4.265893 TCTTAGCAAACTTGTGTGTTGGA 58.734 39.130 0.00 0.00 0.00 3.53
876 877 4.702612 TCTTAGCAAACTTGTGTGTTGGAA 59.297 37.500 0.00 0.00 0.00 3.53
877 878 3.508744 AGCAAACTTGTGTGTTGGAAG 57.491 42.857 0.00 0.00 0.00 3.46
878 879 2.825532 AGCAAACTTGTGTGTTGGAAGT 59.174 40.909 0.00 0.00 0.00 3.01
879 880 3.119495 AGCAAACTTGTGTGTTGGAAGTC 60.119 43.478 0.00 0.00 0.00 3.01
880 881 3.425404 CAAACTTGTGTGTTGGAAGTCG 58.575 45.455 0.00 0.00 0.00 4.18
881 882 1.663695 ACTTGTGTGTTGGAAGTCGG 58.336 50.000 0.00 0.00 0.00 4.79
882 883 1.208535 ACTTGTGTGTTGGAAGTCGGA 59.791 47.619 0.00 0.00 0.00 4.55
883 884 2.285083 CTTGTGTGTTGGAAGTCGGAA 58.715 47.619 0.00 0.00 0.00 4.30
884 885 1.658994 TGTGTGTTGGAAGTCGGAAC 58.341 50.000 0.00 0.00 0.00 3.62
885 886 0.942252 GTGTGTTGGAAGTCGGAACC 59.058 55.000 0.00 0.00 0.00 3.62
886 887 0.531090 TGTGTTGGAAGTCGGAACCG 60.531 55.000 6.94 6.94 41.35 4.44
887 888 0.249573 GTGTTGGAAGTCGGAACCGA 60.250 55.000 12.04 12.04 46.87 4.69
896 897 4.323477 CGGAACCGACCCAGCCAA 62.323 66.667 7.53 0.00 42.83 4.52
897 898 2.114411 GGAACCGACCCAGCCAAA 59.886 61.111 0.00 0.00 0.00 3.28
898 899 1.971695 GGAACCGACCCAGCCAAAG 60.972 63.158 0.00 0.00 0.00 2.77
899 900 1.971695 GAACCGACCCAGCCAAAGG 60.972 63.158 0.00 0.00 0.00 3.11
910 911 2.198426 CCAAAGGGCCACCACTGT 59.802 61.111 6.18 0.00 40.13 3.55
911 912 1.903404 CCAAAGGGCCACCACTGTC 60.903 63.158 6.18 0.00 40.13 3.51
912 913 1.152777 CAAAGGGCCACCACTGTCA 60.153 57.895 6.18 0.00 40.13 3.58
913 914 1.152756 AAAGGGCCACCACTGTCAC 60.153 57.895 6.18 0.00 40.13 3.67
914 915 1.932156 AAAGGGCCACCACTGTCACA 61.932 55.000 6.18 0.00 40.13 3.58
915 916 2.594592 GGGCCACCACTGTCACAC 60.595 66.667 4.39 0.00 36.50 3.82
916 917 2.191908 GGCCACCACTGTCACACA 59.808 61.111 0.00 0.00 0.00 3.72
976 983 1.001974 GAAGCCCCAAATCCACAAACC 59.998 52.381 0.00 0.00 0.00 3.27
1043 1050 1.741145 GTTCAACAACGTCAACCCAGT 59.259 47.619 0.00 0.00 0.00 4.00
1361 1386 2.434884 CAACTCGCCGGCTGTCAT 60.435 61.111 26.68 6.35 0.00 3.06
1419 1444 1.302033 CTTCTGCTGCGTCCACCTT 60.302 57.895 0.00 0.00 0.00 3.50
1810 3508 1.501169 GCAAATCTGCGGCTTTGTTT 58.499 45.000 19.93 0.15 39.20 2.83
1929 3627 3.145551 GATGCCCCCAAGCTGCAG 61.146 66.667 10.11 10.11 38.58 4.41
2008 3713 4.164221 TGGTACATCTCCCTTCTCCATTTC 59.836 45.833 0.00 0.00 0.00 2.17
2450 4482 6.258507 GGTTAAATTCCATGCCTTGCTATTTG 59.741 38.462 0.00 0.00 0.00 2.32
2471 4520 3.201290 GTTCTCAGCCACCATCTACATG 58.799 50.000 0.00 0.00 0.00 3.21
2617 4673 5.600908 TTGCTTCTTTACGTATGTCCAAC 57.399 39.130 0.00 0.00 0.00 3.77
2765 4849 6.929606 GGCTTTCCAGTATTAGTACTACCATG 59.070 42.308 0.91 0.00 39.12 3.66
2813 4897 9.265901 CACTAGTTTAACCATATCAGGATCTTG 57.734 37.037 0.00 0.00 0.00 3.02
2821 4905 6.686544 ACCATATCAGGATCTTGGGAATTTT 58.313 36.000 4.83 0.00 31.86 1.82
2889 4973 8.615211 CATCCAGAAATTCGTATTGAAGATCAA 58.385 33.333 0.00 0.00 40.65 2.57
2936 5020 2.261361 CATCCACTGCGGTGTCGA 59.739 61.111 23.77 15.15 41.53 4.20
3053 5137 0.877649 CTGAAGCCACGGGATGATCG 60.878 60.000 0.00 0.00 0.00 3.69
3058 5142 1.951130 CCACGGGATGATCGAAGCG 60.951 63.158 0.00 0.00 0.00 4.68
3204 5289 3.953775 CCACCCTTGTGCCCGAGT 61.954 66.667 0.00 0.00 41.35 4.18
3211 5296 1.247567 CTTGTGCCCGAGTTTTCCAT 58.752 50.000 0.00 0.00 0.00 3.41
3319 5406 2.755655 GAGATGAGGACCAGAAGACGAA 59.244 50.000 0.00 0.00 0.00 3.85
3410 5508 2.775856 GCCGAGGACATCAGCGAGA 61.776 63.158 0.00 0.00 0.00 4.04
3447 5545 2.743718 CGTCAAGACCCCACTGCT 59.256 61.111 0.00 0.00 0.00 4.24
3570 5668 3.767230 CGTGAAGACGCTGCCACG 61.767 66.667 12.50 12.50 44.66 4.94
3892 5991 2.031333 CAGGACTAGGGTATTACGCGAC 60.031 54.545 15.93 0.00 36.04 5.19
4005 6105 2.505407 CCTGTTGATCCCATAGGTGTCA 59.495 50.000 0.00 0.00 0.00 3.58
4019 6119 1.086696 GTGTCATTCCCACCGACATG 58.913 55.000 0.00 0.00 41.39 3.21
4020 6120 0.676466 TGTCATTCCCACCGACATGC 60.676 55.000 0.00 0.00 34.83 4.06
4021 6121 1.449423 TCATTCCCACCGACATGCG 60.449 57.895 0.00 0.00 40.47 4.73
4197 6325 8.956426 GTCCTACAAATCTGATCCAACATTTAA 58.044 33.333 0.00 0.00 0.00 1.52
4295 6566 4.377431 GCTAATGGAAACGACAGTCAACAG 60.377 45.833 0.41 0.00 0.00 3.16
4312 6583 5.460419 GTCAACAGAAGTCTACTCAACACTG 59.540 44.000 0.00 0.00 33.08 3.66
4402 6676 4.793028 GCCTTTTCAAACCTTCTCTTTCCG 60.793 45.833 0.00 0.00 0.00 4.30
4420 6694 1.207089 CCGGTTCCAGACAGCTAATGA 59.793 52.381 0.00 0.00 0.00 2.57
4493 6774 7.064253 ACAATGTTAGTAATTTCCTCTACACGC 59.936 37.037 0.00 0.00 0.00 5.34
4904 7288 2.932194 AGCTTCTGGAGGCCTGCA 60.932 61.111 26.78 26.78 33.44 4.41
4924 7308 3.636300 GCACTGAATATGCCCAAACCATA 59.364 43.478 0.00 0.00 37.08 2.74
5218 7602 3.855255 TCATCCATCCGGCTTTGATTA 57.145 42.857 0.00 0.00 0.00 1.75
5446 7830 3.126323 ACTTCCTATTTACCCCCGTCT 57.874 47.619 0.00 0.00 0.00 4.18
5951 8336 5.527214 TCATCAGCTTAATTCCACGGTAATG 59.473 40.000 0.00 0.00 0.00 1.90
5952 8337 5.092554 TCAGCTTAATTCCACGGTAATGA 57.907 39.130 0.00 0.00 0.00 2.57
5953 8338 4.873827 TCAGCTTAATTCCACGGTAATGAC 59.126 41.667 0.00 0.00 0.00 3.06
5954 8339 4.035208 CAGCTTAATTCCACGGTAATGACC 59.965 45.833 0.00 0.00 43.03 4.02
6008 8396 9.699410 TTATTTATTCTCATCCATCAGGTGTTT 57.301 29.630 0.00 0.00 35.89 2.83
6063 8498 9.057089 ACAATTTTTACCAAAGTTTTGTTGTGA 57.943 25.926 0.00 0.00 36.45 3.58
6193 8782 5.095691 ACAGTTTGCAGTATTTGTCTTCG 57.904 39.130 0.00 0.00 0.00 3.79
6290 9023 8.755018 CATTTGGAAGTTTGTGTTGAAGAATAC 58.245 33.333 0.00 0.00 0.00 1.89
6341 9079 4.697352 CCTCCACAGTAAACTGAAATCTGG 59.303 45.833 16.74 12.56 46.59 3.86
6407 9146 1.752498 AGTGACAACACCGACACAGTA 59.248 47.619 0.00 0.00 46.99 2.74
6513 9264 8.017418 AGTTAATTTGAGGTTTGGTTCATTCA 57.983 30.769 0.00 0.00 0.00 2.57
6531 9285 1.630369 TCACCATGTCAGCCTAGCTTT 59.370 47.619 0.00 0.00 36.40 3.51
6532 9286 1.741706 CACCATGTCAGCCTAGCTTTG 59.258 52.381 0.00 0.00 36.40 2.77
6592 9352 4.157817 GCAGAGCGCAAAATGTGG 57.842 55.556 11.47 0.00 41.79 4.17
6610 9370 1.375523 GTCAGCCCACTGGTAACCG 60.376 63.158 0.00 0.00 44.59 4.44
6790 9552 3.695803 TGGCCAATCCAAGCTTCAT 57.304 47.368 0.61 0.00 43.21 2.57
6856 9618 4.690122 GCTAGAAACCTGGCGAGTAAATA 58.310 43.478 0.00 0.00 0.00 1.40
6860 9622 5.497474 AGAAACCTGGCGAGTAAATATTGT 58.503 37.500 0.00 0.00 0.00 2.71
6989 9754 3.181470 GGAAGGAGGACAGCTGATCTTAC 60.181 52.174 23.35 11.32 0.00 2.34
7013 9780 2.381752 TCTGTGGAGAAGTGGACTCA 57.618 50.000 0.00 0.00 36.26 3.41
7120 9895 2.675317 GCCTGGTAAGCAGACTACACTG 60.675 54.545 0.00 0.00 40.43 3.66
7121 9896 2.563179 CCTGGTAAGCAGACTACACTGT 59.437 50.000 0.00 0.00 39.73 3.55
7122 9897 3.762288 CCTGGTAAGCAGACTACACTGTA 59.238 47.826 0.00 0.00 39.73 2.74
7124 9899 5.105310 CCTGGTAAGCAGACTACACTGTATT 60.105 44.000 0.00 0.00 39.73 1.89
7126 9901 6.765403 TGGTAAGCAGACTACACTGTATTTT 58.235 36.000 0.00 0.00 39.73 1.82
7127 9902 6.649141 TGGTAAGCAGACTACACTGTATTTTG 59.351 38.462 0.00 0.00 39.73 2.44
7128 9903 6.092259 GGTAAGCAGACTACACTGTATTTTGG 59.908 42.308 0.00 0.00 39.73 3.28
7129 9904 5.483685 AGCAGACTACACTGTATTTTGGA 57.516 39.130 0.00 0.00 39.73 3.53
7130 9905 5.865085 AGCAGACTACACTGTATTTTGGAA 58.135 37.500 0.00 0.00 39.73 3.53
7131 9906 6.476378 AGCAGACTACACTGTATTTTGGAAT 58.524 36.000 0.00 0.00 39.73 3.01
7132 9907 6.595716 AGCAGACTACACTGTATTTTGGAATC 59.404 38.462 0.00 0.00 39.73 2.52
7133 9908 6.183360 GCAGACTACACTGTATTTTGGAATCC 60.183 42.308 0.00 0.00 39.73 3.01
7134 9909 7.106239 CAGACTACACTGTATTTTGGAATCCT 58.894 38.462 0.00 0.00 33.73 3.24
7135 9910 7.607991 CAGACTACACTGTATTTTGGAATCCTT 59.392 37.037 0.00 0.00 33.73 3.36
7136 9911 8.164070 AGACTACACTGTATTTTGGAATCCTTT 58.836 33.333 0.00 0.00 0.00 3.11
7137 9912 8.336801 ACTACACTGTATTTTGGAATCCTTTC 57.663 34.615 0.00 0.00 0.00 2.62
7138 9913 7.942341 ACTACACTGTATTTTGGAATCCTTTCA 59.058 33.333 0.00 0.00 33.23 2.69
7139 9914 7.219484 ACACTGTATTTTGGAATCCTTTCAG 57.781 36.000 0.00 3.84 33.23 3.02
7140 9915 6.095377 CACTGTATTTTGGAATCCTTTCAGC 58.905 40.000 0.00 0.00 33.23 4.26
7141 9916 6.012745 ACTGTATTTTGGAATCCTTTCAGCT 58.987 36.000 0.00 0.00 33.23 4.24
7142 9917 6.494835 ACTGTATTTTGGAATCCTTTCAGCTT 59.505 34.615 0.00 0.00 33.23 3.74
7143 9918 7.669722 ACTGTATTTTGGAATCCTTTCAGCTTA 59.330 33.333 0.00 0.00 33.23 3.09
7144 9919 7.826690 TGTATTTTGGAATCCTTTCAGCTTAC 58.173 34.615 0.00 0.00 33.23 2.34
7184 9959 0.983467 TCAGGCCACTGTTGCTGATA 59.017 50.000 5.01 0.00 45.14 2.15
7185 9960 1.561076 TCAGGCCACTGTTGCTGATAT 59.439 47.619 5.01 0.00 45.14 1.63
7186 9961 2.025981 TCAGGCCACTGTTGCTGATATT 60.026 45.455 5.01 0.00 45.14 1.28
7194 9969 4.331992 CACTGTTGCTGATATTGAGTGAGG 59.668 45.833 0.00 0.00 32.78 3.86
7199 9974 3.054875 TGCTGATATTGAGTGAGGCTGTT 60.055 43.478 0.00 0.00 0.00 3.16
7202 9977 4.697514 TGATATTGAGTGAGGCTGTTAGC 58.302 43.478 0.00 0.00 41.46 3.09
7214 9989 2.979240 GCTGTTAGCTAAAGCCTCAGT 58.021 47.619 20.77 0.00 43.38 3.41
7216 9991 4.698575 GCTGTTAGCTAAAGCCTCAGTAT 58.301 43.478 20.77 0.00 43.38 2.12
7217 9992 5.844004 GCTGTTAGCTAAAGCCTCAGTATA 58.156 41.667 20.77 0.00 43.38 1.47
7218 9993 5.692654 GCTGTTAGCTAAAGCCTCAGTATAC 59.307 44.000 20.77 0.00 43.38 1.47
7219 9994 6.683110 GCTGTTAGCTAAAGCCTCAGTATACA 60.683 42.308 20.77 7.36 43.38 2.29
7220 9995 7.361457 TGTTAGCTAAAGCCTCAGTATACAT 57.639 36.000 7.99 0.00 43.38 2.29
7221 9996 7.434492 TGTTAGCTAAAGCCTCAGTATACATC 58.566 38.462 7.99 0.00 43.38 3.06
7222 9997 7.069455 TGTTAGCTAAAGCCTCAGTATACATCA 59.931 37.037 7.99 0.00 43.38 3.07
7223 9998 6.485830 AGCTAAAGCCTCAGTATACATCAA 57.514 37.500 5.50 0.00 43.38 2.57
7233 10050 7.472663 GCCTCAGTATACATCAAGAAAGGATCT 60.473 40.741 5.50 0.00 41.32 2.75
7244 10061 7.403312 TCAAGAAAGGATCTCTAGTTCTCTG 57.597 40.000 0.00 0.00 37.42 3.35
7313 10130 0.244994 ACGACACACTGATGAGGCTC 59.755 55.000 7.79 7.79 0.00 4.70
7314 10131 0.244721 CGACACACTGATGAGGCTCA 59.755 55.000 21.19 21.19 0.00 4.26
7325 10142 6.318144 CACTGATGAGGCTCATGAAGTTATTT 59.682 38.462 33.30 7.21 37.20 1.40
7340 10157 6.547880 TGAAGTTATTTTTCTTGCCTGGTGTA 59.452 34.615 0.00 0.00 0.00 2.90
7350 10167 4.408921 TCTTGCCTGGTGTATTACATAGCT 59.591 41.667 0.00 0.00 0.00 3.32
7351 10168 4.071961 TGCCTGGTGTATTACATAGCTG 57.928 45.455 0.00 0.00 0.00 4.24
7353 10170 4.058817 GCCTGGTGTATTACATAGCTGTC 58.941 47.826 0.00 0.00 36.79 3.51
7362 10179 7.866393 GTGTATTACATAGCTGTCCGTTTCTAT 59.134 37.037 0.00 0.00 36.79 1.98
7419 10284 6.966632 TGATAATCTAACGCATTTTTCAGCAC 59.033 34.615 0.00 0.00 0.00 4.40
7433 10298 8.928733 CATTTTTCAGCACTATAAAACTGCATT 58.071 29.630 0.00 0.00 33.06 3.56
7447 10312 3.690460 ACTGCATTTTCCCCTACTTGAG 58.310 45.455 0.00 0.00 0.00 3.02
7448 10313 3.074538 ACTGCATTTTCCCCTACTTGAGT 59.925 43.478 0.00 0.00 0.00 3.41
7449 10314 4.288626 ACTGCATTTTCCCCTACTTGAGTA 59.711 41.667 0.00 0.00 0.00 2.59
7450 10315 4.585879 TGCATTTTCCCCTACTTGAGTAC 58.414 43.478 0.00 0.00 0.00 2.73
7495 10360 7.874016 TCTCCAATCCATTCATTTCAAACTTTG 59.126 33.333 0.00 0.00 0.00 2.77
7532 10397 9.467258 CAATCACAACATAACAAGAATCAGTTT 57.533 29.630 0.00 0.00 0.00 2.66
7575 10440 6.661777 TCTTCAATTCCATGATCCATGTGTA 58.338 36.000 0.00 0.00 39.94 2.90
7576 10441 6.543465 TCTTCAATTCCATGATCCATGTGTAC 59.457 38.462 0.00 0.00 39.94 2.90
7577 10442 5.753716 TCAATTCCATGATCCATGTGTACA 58.246 37.500 0.00 0.00 39.94 2.90
7578 10443 5.824097 TCAATTCCATGATCCATGTGTACAG 59.176 40.000 0.00 0.00 39.94 2.74
7579 10444 4.842531 TTCCATGATCCATGTGTACAGT 57.157 40.909 0.00 0.00 39.94 3.55
7583 10448 6.716284 TCCATGATCCATGTGTACAGTAAAA 58.284 36.000 0.00 0.00 39.94 1.52
7584 10449 7.171653 TCCATGATCCATGTGTACAGTAAAAA 58.828 34.615 0.00 0.00 39.94 1.94
7684 10583 7.613585 TGTATACATTCTTCAAAACGTAGGGA 58.386 34.615 0.08 0.00 0.00 4.20
7720 10619 8.614994 AGTTGAAAATTACACGTTTCAGAAAG 57.385 30.769 0.00 0.00 42.86 2.62
7777 10676 0.027194 CGAGAATGCGCTCAACATGG 59.973 55.000 9.73 0.00 34.56 3.66
7801 10700 2.229543 TGCTACAGATTTTGCAAGGCTG 59.770 45.455 18.08 18.08 32.12 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.208686 CTCAGCTCGCCCCGTACC 62.209 72.222 0.00 0.00 0.00 3.34
32 33 4.874977 GCTCAGCTCGCCCCGTAC 62.875 72.222 0.00 0.00 0.00 3.67
69 70 4.731612 ACAGCTCGCTCTGTGCCG 62.732 66.667 8.29 0.00 44.88 5.69
74 75 4.383861 TGCCCACAGCTCGCTCTG 62.384 66.667 2.79 2.79 44.23 3.35
75 76 4.079850 CTGCCCACAGCTCGCTCT 62.080 66.667 0.00 0.00 44.23 4.09
566 567 4.388499 ACGTCATGCCGTGTCCCC 62.388 66.667 0.00 0.00 40.08 4.81
576 577 3.124921 GTTCCCGCCCACGTCATG 61.125 66.667 0.00 0.00 37.70 3.07
577 578 3.319198 AGTTCCCGCCCACGTCAT 61.319 61.111 0.00 0.00 37.70 3.06
578 579 4.308458 CAGTTCCCGCCCACGTCA 62.308 66.667 0.00 0.00 37.70 4.35
635 636 3.902086 GTAGCTCGCCTCGTCCCC 61.902 72.222 0.00 0.00 0.00 4.81
636 637 4.253257 CGTAGCTCGCCTCGTCCC 62.253 72.222 0.00 0.00 0.00 4.46
658 659 4.828925 GAGCTCCCGCACAGCCTC 62.829 72.222 0.87 0.00 37.63 4.70
668 669 0.392193 CATATGATGGGCGAGCTCCC 60.392 60.000 8.47 10.35 46.73 4.30
669 670 0.322975 ACATATGATGGGCGAGCTCC 59.677 55.000 10.38 0.47 33.60 4.70
670 671 2.175878 AACATATGATGGGCGAGCTC 57.824 50.000 10.38 2.73 33.60 4.09
671 672 2.158769 TCAAACATATGATGGGCGAGCT 60.159 45.455 10.38 0.00 33.60 4.09
672 673 2.031682 GTCAAACATATGATGGGCGAGC 60.032 50.000 10.38 0.00 33.60 5.03
673 674 3.249320 CAGTCAAACATATGATGGGCGAG 59.751 47.826 10.38 0.00 33.60 5.03
674 675 3.118445 TCAGTCAAACATATGATGGGCGA 60.118 43.478 10.38 0.00 33.60 5.54
675 676 3.205338 TCAGTCAAACATATGATGGGCG 58.795 45.455 10.38 0.00 33.60 6.13
676 677 5.526115 CATTCAGTCAAACATATGATGGGC 58.474 41.667 10.38 0.00 33.60 5.36
677 678 5.508489 GGCATTCAGTCAAACATATGATGGG 60.508 44.000 10.38 0.00 33.60 4.00
678 679 5.526115 GGCATTCAGTCAAACATATGATGG 58.474 41.667 10.38 0.00 33.60 3.51
679 680 5.007921 TCGGCATTCAGTCAAACATATGATG 59.992 40.000 10.38 8.23 0.00 3.07
680 681 5.008019 GTCGGCATTCAGTCAAACATATGAT 59.992 40.000 10.38 0.00 0.00 2.45
681 682 4.332543 GTCGGCATTCAGTCAAACATATGA 59.667 41.667 10.38 0.00 0.00 2.15
682 683 4.591202 GTCGGCATTCAGTCAAACATATG 58.409 43.478 0.00 0.00 0.00 1.78
683 684 3.309682 CGTCGGCATTCAGTCAAACATAT 59.690 43.478 0.00 0.00 0.00 1.78
684 685 2.670905 CGTCGGCATTCAGTCAAACATA 59.329 45.455 0.00 0.00 0.00 2.29
685 686 1.464608 CGTCGGCATTCAGTCAAACAT 59.535 47.619 0.00 0.00 0.00 2.71
686 687 0.865111 CGTCGGCATTCAGTCAAACA 59.135 50.000 0.00 0.00 0.00 2.83
687 688 0.865769 ACGTCGGCATTCAGTCAAAC 59.134 50.000 0.00 0.00 0.00 2.93
688 689 0.865111 CACGTCGGCATTCAGTCAAA 59.135 50.000 0.00 0.00 0.00 2.69
689 690 0.032815 TCACGTCGGCATTCAGTCAA 59.967 50.000 0.00 0.00 0.00 3.18
690 691 0.032815 TTCACGTCGGCATTCAGTCA 59.967 50.000 0.00 0.00 0.00 3.41
691 692 0.438830 GTTCACGTCGGCATTCAGTC 59.561 55.000 0.00 0.00 0.00 3.51
692 693 0.249699 TGTTCACGTCGGCATTCAGT 60.250 50.000 0.00 0.00 0.00 3.41
693 694 1.078709 ATGTTCACGTCGGCATTCAG 58.921 50.000 0.00 0.00 0.00 3.02
694 695 0.795698 CATGTTCACGTCGGCATTCA 59.204 50.000 0.00 0.00 0.00 2.57
695 696 0.521242 GCATGTTCACGTCGGCATTC 60.521 55.000 0.00 0.00 0.00 2.67
696 697 1.233950 TGCATGTTCACGTCGGCATT 61.234 50.000 0.00 0.00 0.00 3.56
697 698 1.670730 TGCATGTTCACGTCGGCAT 60.671 52.632 0.00 0.00 0.00 4.40
698 699 2.280457 TGCATGTTCACGTCGGCA 60.280 55.556 0.00 0.00 0.00 5.69
699 700 2.111932 TTGTGCATGTTCACGTCGGC 62.112 55.000 0.00 0.00 39.73 5.54
700 701 0.306228 TTTGTGCATGTTCACGTCGG 59.694 50.000 0.00 0.00 39.73 4.79
701 702 2.098215 TTTTGTGCATGTTCACGTCG 57.902 45.000 0.00 0.00 39.73 5.12
714 715 2.699954 AGGAGGTAGACGCATTTTGTG 58.300 47.619 0.00 0.00 0.00 3.33
715 716 3.369157 GGTAGGAGGTAGACGCATTTTGT 60.369 47.826 0.00 0.00 0.00 2.83
716 717 3.195661 GGTAGGAGGTAGACGCATTTTG 58.804 50.000 0.00 0.00 0.00 2.44
717 718 2.159142 CGGTAGGAGGTAGACGCATTTT 60.159 50.000 0.00 0.00 0.00 1.82
718 719 1.407979 CGGTAGGAGGTAGACGCATTT 59.592 52.381 0.00 0.00 0.00 2.32
719 720 1.030457 CGGTAGGAGGTAGACGCATT 58.970 55.000 0.00 0.00 0.00 3.56
720 721 0.182061 TCGGTAGGAGGTAGACGCAT 59.818 55.000 0.00 0.00 0.00 4.73
721 722 0.463295 CTCGGTAGGAGGTAGACGCA 60.463 60.000 0.00 0.00 39.22 5.24
722 723 1.784036 GCTCGGTAGGAGGTAGACGC 61.784 65.000 0.00 0.00 43.36 5.19
723 724 1.497223 CGCTCGGTAGGAGGTAGACG 61.497 65.000 0.00 0.00 43.36 4.18
724 725 1.784036 GCGCTCGGTAGGAGGTAGAC 61.784 65.000 0.00 0.00 43.36 2.59
725 726 1.525535 GCGCTCGGTAGGAGGTAGA 60.526 63.158 0.00 0.00 43.36 2.59
726 727 1.822613 TGCGCTCGGTAGGAGGTAG 60.823 63.158 9.73 0.00 43.36 3.18
727 728 2.117156 GTGCGCTCGGTAGGAGGTA 61.117 63.158 9.73 0.00 43.36 3.08
728 729 3.450115 GTGCGCTCGGTAGGAGGT 61.450 66.667 9.73 0.00 43.36 3.85
729 730 3.141488 AGTGCGCTCGGTAGGAGG 61.141 66.667 9.73 0.00 43.36 4.30
730 731 2.103143 CAGTGCGCTCGGTAGGAG 59.897 66.667 9.73 0.00 46.06 3.69
731 732 2.360726 TCAGTGCGCTCGGTAGGA 60.361 61.111 9.73 0.00 0.00 2.94
732 733 2.202623 GTCAGTGCGCTCGGTAGG 60.203 66.667 9.73 0.00 0.00 3.18
733 734 2.202623 GGTCAGTGCGCTCGGTAG 60.203 66.667 9.73 0.00 0.00 3.18
734 735 4.111016 CGGTCAGTGCGCTCGGTA 62.111 66.667 9.73 0.00 0.00 4.02
741 742 2.667318 ATTTGCGTCGGTCAGTGCG 61.667 57.895 0.00 0.00 0.00 5.34
742 743 1.154413 CATTTGCGTCGGTCAGTGC 60.154 57.895 0.00 0.00 0.00 4.40
743 744 0.948623 TCCATTTGCGTCGGTCAGTG 60.949 55.000 0.00 0.00 0.00 3.66
744 745 0.250124 TTCCATTTGCGTCGGTCAGT 60.250 50.000 0.00 0.00 0.00 3.41
745 746 0.871722 TTTCCATTTGCGTCGGTCAG 59.128 50.000 0.00 0.00 0.00 3.51
746 747 1.309950 TTTTCCATTTGCGTCGGTCA 58.690 45.000 0.00 0.00 0.00 4.02
747 748 2.048498 GTTTTTCCATTTGCGTCGGTC 58.952 47.619 0.00 0.00 0.00 4.79
748 749 1.598430 CGTTTTTCCATTTGCGTCGGT 60.598 47.619 0.00 0.00 0.00 4.69
749 750 1.049251 CGTTTTTCCATTTGCGTCGG 58.951 50.000 0.00 0.00 0.00 4.79
750 751 1.049251 CCGTTTTTCCATTTGCGTCG 58.951 50.000 0.00 0.00 0.00 5.12
751 752 2.048498 GTCCGTTTTTCCATTTGCGTC 58.952 47.619 0.00 0.00 0.00 5.19
752 753 1.405821 TGTCCGTTTTTCCATTTGCGT 59.594 42.857 0.00 0.00 0.00 5.24
753 754 1.784283 GTGTCCGTTTTTCCATTTGCG 59.216 47.619 0.00 0.00 0.00 4.85
754 755 1.784283 CGTGTCCGTTTTTCCATTTGC 59.216 47.619 0.00 0.00 0.00 3.68
755 756 2.033550 TCCGTGTCCGTTTTTCCATTTG 59.966 45.455 0.00 0.00 0.00 2.32
756 757 2.033675 GTCCGTGTCCGTTTTTCCATTT 59.966 45.455 0.00 0.00 0.00 2.32
757 758 1.605232 GTCCGTGTCCGTTTTTCCATT 59.395 47.619 0.00 0.00 0.00 3.16
758 759 1.232119 GTCCGTGTCCGTTTTTCCAT 58.768 50.000 0.00 0.00 0.00 3.41
759 760 1.152989 CGTCCGTGTCCGTTTTTCCA 61.153 55.000 0.00 0.00 0.00 3.53
760 761 1.566077 CGTCCGTGTCCGTTTTTCC 59.434 57.895 0.00 0.00 0.00 3.13
761 762 1.566077 CCGTCCGTGTCCGTTTTTC 59.434 57.895 0.00 0.00 0.00 2.29
762 763 1.888638 CCCGTCCGTGTCCGTTTTT 60.889 57.895 0.00 0.00 0.00 1.94
763 764 2.280321 CCCGTCCGTGTCCGTTTT 60.280 61.111 0.00 0.00 0.00 2.43
764 765 4.974989 GCCCGTCCGTGTCCGTTT 62.975 66.667 0.00 0.00 0.00 3.60
780 781 3.115892 TTTGCATCGTCCGTCCGC 61.116 61.111 0.00 0.00 0.00 5.54
781 782 2.776072 GTTTGCATCGTCCGTCCG 59.224 61.111 0.00 0.00 0.00 4.79
782 783 2.736682 CCGTTTGCATCGTCCGTCC 61.737 63.158 10.11 0.00 0.00 4.79
783 784 1.735198 TCCGTTTGCATCGTCCGTC 60.735 57.895 10.11 0.00 0.00 4.79
784 785 2.025418 GTCCGTTTGCATCGTCCGT 61.025 57.895 10.11 0.00 0.00 4.69
785 786 1.561717 TTGTCCGTTTGCATCGTCCG 61.562 55.000 10.11 0.00 0.00 4.79
786 787 0.589223 TTTGTCCGTTTGCATCGTCC 59.411 50.000 10.11 2.45 0.00 4.79
787 788 2.392933 TTTTGTCCGTTTGCATCGTC 57.607 45.000 10.11 4.86 0.00 4.20
788 789 2.853731 TTTTTGTCCGTTTGCATCGT 57.146 40.000 10.11 0.00 0.00 3.73
804 805 6.744112 TGGACAACGATTTTATCAGCTTTTT 58.256 32.000 0.00 0.00 0.00 1.94
805 806 6.325919 TGGACAACGATTTTATCAGCTTTT 57.674 33.333 0.00 0.00 0.00 2.27
806 807 5.957842 TGGACAACGATTTTATCAGCTTT 57.042 34.783 0.00 0.00 0.00 3.51
807 808 6.515272 AATGGACAACGATTTTATCAGCTT 57.485 33.333 0.00 0.00 0.00 3.74
808 809 6.515272 AAATGGACAACGATTTTATCAGCT 57.485 33.333 0.00 0.00 32.15 4.24
809 810 5.452302 CGAAATGGACAACGATTTTATCAGC 59.548 40.000 0.00 0.00 35.28 4.26
810 811 5.965334 CCGAAATGGACAACGATTTTATCAG 59.035 40.000 0.00 0.00 42.00 2.90
811 812 5.413213 ACCGAAATGGACAACGATTTTATCA 59.587 36.000 0.00 0.00 42.00 2.15
812 813 5.875930 ACCGAAATGGACAACGATTTTATC 58.124 37.500 0.00 0.00 42.00 1.75
813 814 5.413213 TGACCGAAATGGACAACGATTTTAT 59.587 36.000 0.00 0.00 39.52 1.40
814 815 4.755629 TGACCGAAATGGACAACGATTTTA 59.244 37.500 0.00 0.00 39.52 1.52
815 816 3.566322 TGACCGAAATGGACAACGATTTT 59.434 39.130 0.00 0.00 39.52 1.82
816 817 3.142951 TGACCGAAATGGACAACGATTT 58.857 40.909 0.00 0.00 39.52 2.17
817 818 2.742053 CTGACCGAAATGGACAACGATT 59.258 45.455 0.00 0.00 41.91 3.34
818 819 2.346803 CTGACCGAAATGGACAACGAT 58.653 47.619 0.00 0.00 41.91 3.73
819 820 1.606994 CCTGACCGAAATGGACAACGA 60.607 52.381 0.00 0.00 41.91 3.85
820 821 0.796312 CCTGACCGAAATGGACAACG 59.204 55.000 0.00 0.00 41.91 4.10
821 822 0.521735 GCCTGACCGAAATGGACAAC 59.478 55.000 0.00 0.00 41.91 3.32
822 823 0.608035 GGCCTGACCGAAATGGACAA 60.608 55.000 0.00 0.00 41.91 3.18
823 824 1.002624 GGCCTGACCGAAATGGACA 60.003 57.895 0.00 0.00 42.00 4.02
824 825 3.905249 GGCCTGACCGAAATGGAC 58.095 61.111 0.00 0.00 42.00 4.02
833 834 4.280019 AACCCCAACGGCCTGACC 62.280 66.667 0.00 0.00 33.26 4.02
834 835 2.983592 CAACCCCAACGGCCTGAC 60.984 66.667 0.00 0.00 33.26 3.51
835 836 4.966787 GCAACCCCAACGGCCTGA 62.967 66.667 0.00 0.00 33.26 3.86
836 837 4.974721 AGCAACCCCAACGGCCTG 62.975 66.667 0.00 0.00 33.26 4.85
837 838 4.660938 GAGCAACCCCAACGGCCT 62.661 66.667 0.00 0.00 33.26 5.19
838 839 2.757980 TAAGAGCAACCCCAACGGCC 62.758 60.000 0.00 0.00 33.26 6.13
839 840 1.302993 TAAGAGCAACCCCAACGGC 60.303 57.895 0.00 0.00 33.26 5.68
840 841 1.305930 GCTAAGAGCAACCCCAACGG 61.306 60.000 0.00 0.00 41.89 4.44
841 842 2.171635 GCTAAGAGCAACCCCAACG 58.828 57.895 0.00 0.00 41.89 4.10
851 852 3.971032 ACACACAAGTTTGCTAAGAGC 57.029 42.857 0.00 0.00 42.82 4.09
852 853 4.335315 TCCAACACACAAGTTTGCTAAGAG 59.665 41.667 0.00 0.00 0.00 2.85
853 854 4.265893 TCCAACACACAAGTTTGCTAAGA 58.734 39.130 0.00 0.00 0.00 2.10
854 855 4.630894 TCCAACACACAAGTTTGCTAAG 57.369 40.909 0.00 0.00 0.00 2.18
855 856 4.461081 ACTTCCAACACACAAGTTTGCTAA 59.539 37.500 0.00 0.00 0.00 3.09
856 857 4.013728 ACTTCCAACACACAAGTTTGCTA 58.986 39.130 0.00 0.00 0.00 3.49
857 858 2.825532 ACTTCCAACACACAAGTTTGCT 59.174 40.909 0.00 0.00 0.00 3.91
858 859 3.179048 GACTTCCAACACACAAGTTTGC 58.821 45.455 0.00 0.00 30.32 3.68
859 860 3.425404 CGACTTCCAACACACAAGTTTG 58.575 45.455 0.00 0.00 30.32 2.93
860 861 2.422127 CCGACTTCCAACACACAAGTTT 59.578 45.455 0.00 0.00 30.32 2.66
861 862 2.014128 CCGACTTCCAACACACAAGTT 58.986 47.619 0.00 0.00 30.32 2.66
862 863 1.208535 TCCGACTTCCAACACACAAGT 59.791 47.619 0.00 0.00 32.93 3.16
863 864 1.948104 TCCGACTTCCAACACACAAG 58.052 50.000 0.00 0.00 0.00 3.16
864 865 2.011222 GTTCCGACTTCCAACACACAA 58.989 47.619 0.00 0.00 0.00 3.33
865 866 1.658994 GTTCCGACTTCCAACACACA 58.341 50.000 0.00 0.00 0.00 3.72
866 867 0.942252 GGTTCCGACTTCCAACACAC 59.058 55.000 0.00 0.00 0.00 3.82
867 868 0.531090 CGGTTCCGACTTCCAACACA 60.531 55.000 5.19 0.00 0.00 3.72
868 869 0.249573 TCGGTTCCGACTTCCAACAC 60.250 55.000 10.00 0.00 33.26 3.32
869 870 2.126064 TCGGTTCCGACTTCCAACA 58.874 52.632 10.00 0.00 33.26 3.33
879 880 3.835790 TTTGGCTGGGTCGGTTCCG 62.836 63.158 4.74 4.74 0.00 4.30
880 881 1.971695 CTTTGGCTGGGTCGGTTCC 60.972 63.158 0.00 0.00 0.00 3.62
881 882 1.971695 CCTTTGGCTGGGTCGGTTC 60.972 63.158 0.00 0.00 0.00 3.62
882 883 2.115266 CCTTTGGCTGGGTCGGTT 59.885 61.111 0.00 0.00 0.00 4.44
883 884 3.966543 CCCTTTGGCTGGGTCGGT 61.967 66.667 3.24 0.00 39.82 4.69
893 894 1.903404 GACAGTGGTGGCCCTTTGG 60.903 63.158 0.00 0.00 0.00 3.28
894 895 1.152777 TGACAGTGGTGGCCCTTTG 60.153 57.895 0.00 0.00 0.00 2.77
895 896 1.152756 GTGACAGTGGTGGCCCTTT 60.153 57.895 0.00 0.00 0.00 3.11
896 897 2.382770 TGTGACAGTGGTGGCCCTT 61.383 57.895 0.00 0.00 0.00 3.95
897 898 2.772191 TGTGACAGTGGTGGCCCT 60.772 61.111 0.00 0.00 0.00 5.19
898 899 2.594592 GTGTGACAGTGGTGGCCC 60.595 66.667 0.00 0.00 0.00 5.80
899 900 1.893808 CTGTGTGACAGTGGTGGCC 60.894 63.158 0.00 0.00 41.19 5.36
900 901 3.736483 CTGTGTGACAGTGGTGGC 58.264 61.111 0.00 0.00 41.19 5.01
908 909 0.602638 GAATGGTCCGCTGTGTGACA 60.603 55.000 10.50 0.00 33.09 3.58
909 910 1.626654 CGAATGGTCCGCTGTGTGAC 61.627 60.000 2.48 2.48 0.00 3.67
910 911 1.374125 CGAATGGTCCGCTGTGTGA 60.374 57.895 0.00 0.00 0.00 3.58
911 912 3.168271 CGAATGGTCCGCTGTGTG 58.832 61.111 0.00 0.00 0.00 3.82
918 919 1.431488 CTGTGGATGCGAATGGTCCG 61.431 60.000 0.00 0.00 34.72 4.79
919 920 1.718757 GCTGTGGATGCGAATGGTCC 61.719 60.000 0.00 0.00 0.00 4.46
1036 1043 4.740822 GGCCGCCATCACTGGGTT 62.741 66.667 3.91 0.00 43.36 4.11
1356 1381 4.492160 GAGACGGCGGCGATGACA 62.492 66.667 38.93 0.00 0.00 3.58
1405 1430 0.108186 CAGATAAGGTGGACGCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
1419 1444 0.390492 CGTCCATCTGGCTGCAGATA 59.610 55.000 20.43 3.78 39.69 1.98
1805 3503 1.243902 GGCGATGTCCTCCAAAACAA 58.756 50.000 0.00 0.00 0.00 2.83
1810 3508 2.264480 CACGGCGATGTCCTCCAA 59.736 61.111 16.62 0.00 0.00 3.53
1929 3627 3.211045 TGGCTCTAAATATCCAAACGCC 58.789 45.455 0.00 0.00 35.67 5.68
2393 4191 8.863049 GTGCTCACATAAATATGAAACAAAAGG 58.137 33.333 7.40 0.00 37.15 3.11
2450 4482 3.201290 CATGTAGATGGTGGCTGAGAAC 58.799 50.000 0.00 0.00 0.00 3.01
2572 4628 6.418057 AAGCACCAAAAATCAAGGTATCAA 57.582 33.333 0.00 0.00 33.49 2.57
2617 4673 6.018669 AGCGAGAAACACTAGAACAAGAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
2765 4849 7.476667 AGTGTAGTAGCATCAATATAGCGATC 58.523 38.462 0.00 0.00 0.00 3.69
2925 5009 0.170339 TCTGTACATCGACACCGCAG 59.830 55.000 0.00 0.00 35.37 5.18
2936 5020 3.406512 AGAGCCCCTACTTCTGTACAT 57.593 47.619 0.00 0.00 0.00 2.29
3053 5137 0.944311 TTCTGTCTTGGCGTCGCTTC 60.944 55.000 18.11 1.39 0.00 3.86
3058 5142 1.204312 GCGTTTCTGTCTTGGCGTC 59.796 57.895 0.00 0.00 0.00 5.19
3084 5168 3.844090 GAGCCACCTCGCCCTCTC 61.844 72.222 0.00 0.00 0.00 3.20
3196 5281 0.608035 GGTGATGGAAAACTCGGGCA 60.608 55.000 0.00 0.00 0.00 5.36
3204 5289 3.570540 TGTGGTTGATGGTGATGGAAAA 58.429 40.909 0.00 0.00 0.00 2.29
3211 5296 2.890311 GTTCCAATGTGGTTGATGGTGA 59.110 45.455 0.00 0.00 40.37 4.02
3298 5385 2.370349 TCGTCTTCTGGTCCTCATCTC 58.630 52.381 0.00 0.00 0.00 2.75
3447 5545 1.152589 TGGCAACTGCATGGGAACA 60.153 52.632 3.76 0.00 44.36 3.18
4019 6119 1.081840 GCTGCAAACTTCAGTCCGC 60.082 57.895 0.00 0.00 34.21 5.54
4020 6120 0.886490 AGGCTGCAAACTTCAGTCCG 60.886 55.000 0.50 0.00 36.88 4.79
4021 6121 0.877743 GAGGCTGCAAACTTCAGTCC 59.122 55.000 0.50 0.00 36.88 3.85
4295 6566 4.585955 TGGTCAGTGTTGAGTAGACTTC 57.414 45.455 0.00 0.00 32.98 3.01
4312 6583 4.445879 GGGGGTATCCTTAGAAACATGGTC 60.446 50.000 0.00 0.00 35.33 4.02
4402 6676 4.762251 AGTTTTCATTAGCTGTCTGGAACC 59.238 41.667 0.00 0.00 0.00 3.62
4420 6694 8.986477 AGATAAATTGGTACGTACGTAGTTTT 57.014 30.769 27.48 22.53 37.78 2.43
4904 7288 5.704354 TGATATGGTTTGGGCATATTCAGT 58.296 37.500 0.00 0.00 0.00 3.41
4924 7308 3.149196 AGCTTGTCCAACATCGTTTGAT 58.851 40.909 0.00 0.00 34.28 2.57
5995 8383 4.202274 TGTTCGTAGAAAACACCTGATGGA 60.202 41.667 0.00 0.00 45.90 3.41
6040 8474 8.499967 GTGTCACAACAAAACTTTGGTAAAAAT 58.500 29.630 7.09 0.00 42.34 1.82
6099 8688 3.748083 AGCAGAACATGAAGAAGCAGAA 58.252 40.909 0.00 0.00 0.00 3.02
6212 8804 3.673543 TGGGGGTACAACAAGAACTTT 57.326 42.857 0.00 0.00 0.00 2.66
6290 9023 3.744660 ACAGCTGAAGGTTTACCAGAAG 58.255 45.455 23.35 0.00 38.89 2.85
6341 9079 8.308207 TCTATAACAAATTAAAAAGTGGGGCAC 58.692 33.333 0.00 0.00 34.10 5.01
6419 9159 3.411446 CACAAATCAGCCTACTGGAACA 58.589 45.455 0.00 0.00 44.59 3.18
6489 9240 7.170828 GGTGAATGAACCAAACCTCAAATTAAC 59.829 37.037 0.00 0.00 40.22 2.01
6513 9264 1.352352 ACAAAGCTAGGCTGACATGGT 59.648 47.619 0.00 0.00 39.62 3.55
6592 9352 1.375523 CGGTTACCAGTGGGCTGAC 60.376 63.158 15.21 6.06 45.28 3.51
6610 9370 0.951040 CCAGAACTTGACGGTGAGGC 60.951 60.000 0.00 0.00 0.00 4.70
6790 9552 4.394078 CGTCCGTCGAGAACCGCA 62.394 66.667 0.00 0.00 42.86 5.69
6856 9618 4.768448 TCCAGATGATGCACTTTTCACAAT 59.232 37.500 0.00 0.00 0.00 2.71
6860 9622 4.025040 ACTCCAGATGATGCACTTTTCA 57.975 40.909 0.00 0.00 0.00 2.69
6969 9731 3.445008 TGTAAGATCAGCTGTCCTCCTT 58.555 45.455 14.67 12.45 0.00 3.36
6989 9754 3.134458 GTCCACTTCTCCACAGAAACTG 58.866 50.000 0.00 0.00 38.23 3.16
7039 9806 1.806542 CAGCGAGCAACAAATACCACT 59.193 47.619 0.00 0.00 0.00 4.00
7120 9895 7.826690 TGTAAGCTGAAAGGATTCCAAAATAC 58.173 34.615 5.29 0.00 34.49 1.89
7121 9896 7.122650 CCTGTAAGCTGAAAGGATTCCAAAATA 59.877 37.037 0.00 0.00 34.49 1.40
7122 9897 6.071165 CCTGTAAGCTGAAAGGATTCCAAAAT 60.071 38.462 0.00 0.00 34.49 1.82
7124 9899 4.766891 CCTGTAAGCTGAAAGGATTCCAAA 59.233 41.667 0.00 0.00 34.49 3.28
7126 9901 3.330701 ACCTGTAAGCTGAAAGGATTCCA 59.669 43.478 15.13 0.00 34.49 3.53
7127 9902 3.956744 ACCTGTAAGCTGAAAGGATTCC 58.043 45.455 15.13 0.00 34.49 3.01
7128 9903 4.762251 ACAACCTGTAAGCTGAAAGGATTC 59.238 41.667 15.13 0.00 36.04 2.52
7129 9904 4.520492 CACAACCTGTAAGCTGAAAGGATT 59.480 41.667 15.13 1.96 33.78 3.01
7130 9905 4.074970 CACAACCTGTAAGCTGAAAGGAT 58.925 43.478 15.13 0.00 33.78 3.24
7131 9906 3.118038 ACACAACCTGTAAGCTGAAAGGA 60.118 43.478 15.13 0.00 33.78 3.36
7132 9907 3.003689 CACACAACCTGTAAGCTGAAAGG 59.996 47.826 5.62 5.62 35.82 3.11
7133 9908 3.003689 CCACACAACCTGTAAGCTGAAAG 59.996 47.826 0.00 0.00 0.00 2.62
7134 9909 2.948979 CCACACAACCTGTAAGCTGAAA 59.051 45.455 0.00 0.00 0.00 2.69
7135 9910 2.571212 CCACACAACCTGTAAGCTGAA 58.429 47.619 0.00 0.00 0.00 3.02
7136 9911 1.813862 GCCACACAACCTGTAAGCTGA 60.814 52.381 0.00 0.00 31.43 4.26
7137 9912 0.593128 GCCACACAACCTGTAAGCTG 59.407 55.000 0.00 0.00 31.43 4.24
7138 9913 0.474184 AGCCACACAACCTGTAAGCT 59.526 50.000 0.00 0.00 37.02 3.74
7139 9914 0.593128 CAGCCACACAACCTGTAAGC 59.407 55.000 0.00 0.00 33.38 3.09
7140 9915 1.603802 CACAGCCACACAACCTGTAAG 59.396 52.381 0.00 0.00 37.70 2.34
7141 9916 1.065053 ACACAGCCACACAACCTGTAA 60.065 47.619 0.00 0.00 37.70 2.41
7142 9917 0.544223 ACACAGCCACACAACCTGTA 59.456 50.000 0.00 0.00 37.70 2.74
7143 9918 1.031571 CACACAGCCACACAACCTGT 61.032 55.000 0.00 0.00 40.22 4.00
7144 9919 1.729276 CACACAGCCACACAACCTG 59.271 57.895 0.00 0.00 0.00 4.00
7184 9959 4.826274 TTAGCTAACAGCCTCACTCAAT 57.174 40.909 0.86 0.00 43.77 2.57
7185 9960 4.569943 CTTTAGCTAACAGCCTCACTCAA 58.430 43.478 5.45 0.00 43.77 3.02
7186 9961 3.617531 GCTTTAGCTAACAGCCTCACTCA 60.618 47.826 20.77 0.00 43.77 3.41
7194 9969 2.979240 ACTGAGGCTTTAGCTAACAGC 58.021 47.619 22.17 22.17 42.84 4.40
7199 9974 7.505923 TCTTGATGTATACTGAGGCTTTAGCTA 59.494 37.037 4.17 0.00 41.70 3.32
7202 9977 8.948631 TTTCTTGATGTATACTGAGGCTTTAG 57.051 34.615 4.17 0.00 0.00 1.85
7209 9984 8.859090 AGAGATCCTTTCTTGATGTATACTGAG 58.141 37.037 4.17 0.00 33.74 3.35
7210 9985 8.774546 AGAGATCCTTTCTTGATGTATACTGA 57.225 34.615 4.17 0.00 33.74 3.41
7216 9991 8.830915 AGAACTAGAGATCCTTTCTTGATGTA 57.169 34.615 0.00 0.00 33.74 2.29
7217 9992 7.619302 AGAGAACTAGAGATCCTTTCTTGATGT 59.381 37.037 0.00 0.00 33.74 3.06
7218 9993 7.922278 CAGAGAACTAGAGATCCTTTCTTGATG 59.078 40.741 0.00 0.00 33.74 3.07
7219 9994 7.417797 GCAGAGAACTAGAGATCCTTTCTTGAT 60.418 40.741 0.00 0.00 33.74 2.57
7220 9995 6.127479 GCAGAGAACTAGAGATCCTTTCTTGA 60.127 42.308 0.00 0.00 33.74 3.02
7221 9996 6.042143 GCAGAGAACTAGAGATCCTTTCTTG 58.958 44.000 0.00 0.00 33.74 3.02
7222 9997 5.719085 TGCAGAGAACTAGAGATCCTTTCTT 59.281 40.000 0.00 0.00 33.74 2.52
7223 9998 5.268387 TGCAGAGAACTAGAGATCCTTTCT 58.732 41.667 0.00 0.00 37.41 2.52
7313 10130 6.366877 CACCAGGCAAGAAAAATAACTTCATG 59.633 38.462 0.00 0.00 0.00 3.07
7314 10131 6.041979 ACACCAGGCAAGAAAAATAACTTCAT 59.958 34.615 0.00 0.00 0.00 2.57
7325 10142 5.588648 GCTATGTAATACACCAGGCAAGAAA 59.411 40.000 0.00 0.00 0.00 2.52
7340 10157 5.696724 GCATAGAAACGGACAGCTATGTAAT 59.303 40.000 0.00 0.00 40.68 1.89
7350 10167 1.270571 TGTGCTGCATAGAAACGGACA 60.271 47.619 5.27 0.00 0.00 4.02
7351 10168 1.394917 CTGTGCTGCATAGAAACGGAC 59.605 52.381 20.13 0.00 0.00 4.79
7353 10170 0.097674 GCTGTGCTGCATAGAAACGG 59.902 55.000 27.45 10.01 0.00 4.44
7362 10179 0.464870 ACCATTTTTGCTGTGCTGCA 59.535 45.000 0.00 0.00 41.65 4.41
7419 10284 7.881775 AGTAGGGGAAAATGCAGTTTTATAG 57.118 36.000 14.04 0.00 40.04 1.31
7433 10298 5.280998 AGGTAGTACTCAAGTAGGGGAAA 57.719 43.478 0.00 0.00 0.00 3.13
7447 10312 8.504815 GGAGAAAATTCAACTGAAAGGTAGTAC 58.495 37.037 0.00 0.00 39.30 2.73
7448 10313 8.215050 TGGAGAAAATTCAACTGAAAGGTAGTA 58.785 33.333 0.00 0.00 39.30 1.82
7449 10314 7.060421 TGGAGAAAATTCAACTGAAAGGTAGT 58.940 34.615 0.00 0.00 39.30 2.73
7450 10315 7.510549 TGGAGAAAATTCAACTGAAAGGTAG 57.489 36.000 0.00 0.00 39.30 3.18
7495 10360 7.647318 TGTTATGTTGTGATTGATGTGTTTCAC 59.353 33.333 0.00 0.00 39.11 3.18
7515 10380 8.553459 AGTGGACTAAACTGATTCTTGTTATG 57.447 34.615 0.00 0.00 0.00 1.90
7532 10397 7.004555 TGAAGATTCTTAAGCAAGTGGACTA 57.995 36.000 0.00 0.00 33.20 2.59
7583 10448 8.036575 TGTATGTAGAGGCATTACTTTACGTTT 58.963 33.333 0.00 0.00 32.41 3.60
7584 10449 7.490402 GTGTATGTAGAGGCATTACTTTACGTT 59.510 37.037 0.00 0.00 32.41 3.99
7585 10450 6.976925 GTGTATGTAGAGGCATTACTTTACGT 59.023 38.462 0.00 0.00 32.41 3.57
7586 10451 7.201145 AGTGTATGTAGAGGCATTACTTTACG 58.799 38.462 0.00 0.00 32.41 3.18
7588 10453 8.537016 ACAAGTGTATGTAGAGGCATTACTTTA 58.463 33.333 0.00 0.00 35.19 1.85
7589 10454 7.394816 ACAAGTGTATGTAGAGGCATTACTTT 58.605 34.615 0.00 0.00 35.19 2.66
7662 10561 7.989416 TTTCCCTACGTTTTGAAGAATGTAT 57.011 32.000 0.00 0.00 32.31 2.29
7684 10583 9.180678 CGTGTAATTTTCAACTTTAGCTGATTT 57.819 29.630 0.00 0.00 0.00 2.17
7720 10619 7.743104 TGCGTTCTTCTTTTATCTTTCATCTC 58.257 34.615 0.00 0.00 0.00 2.75
7743 10642 1.519408 TCTCGGGTTTTGCTAGTTGC 58.481 50.000 0.00 0.00 43.25 4.17
7777 10676 3.568538 CCTTGCAAAATCTGTAGCACAC 58.431 45.455 0.00 0.00 36.62 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.