Multiple sequence alignment - TraesCS7B01G100700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G100700 chr7B 100.000 4557 0 0 1 4557 115243619 115239063 0.000000e+00 8416.0
1 TraesCS7B01G100700 chr7A 90.504 3475 197 65 721 4147 154390364 154386975 0.000000e+00 4466.0
2 TraesCS7B01G100700 chr7A 85.437 309 42 3 339 645 154390795 154390488 7.360000e-83 318.0
3 TraesCS7B01G100700 chr7A 81.931 404 36 10 4147 4513 154386887 154386484 1.590000e-79 307.0
4 TraesCS7B01G100700 chr7A 79.894 189 22 12 472 652 169966257 169966437 1.720000e-24 124.0
5 TraesCS7B01G100700 chr7A 93.878 49 1 1 4511 4557 154386381 154386333 6.320000e-09 73.1
6 TraesCS7B01G100700 chr7D 89.173 1958 125 40 2646 4557 153300342 153298426 0.000000e+00 2361.0
7 TraesCS7B01G100700 chr7D 90.890 1405 60 23 1220 2615 153301686 153300341 0.000000e+00 1823.0
8 TraesCS7B01G100700 chr7D 88.366 361 28 6 736 1095 153302541 153302194 5.450000e-114 422.0
9 TraesCS7B01G100700 chr7D 87.059 340 40 4 313 649 153303219 153302881 9.250000e-102 381.0
10 TraesCS7B01G100700 chr5B 91.549 142 10 2 1 141 129317519 129317659 1.290000e-45 195.0
11 TraesCS7B01G100700 chr5B 90.588 85 8 0 232 316 547451087 547451171 3.730000e-21 113.0
12 TraesCS7B01G100700 chr5B 90.588 85 8 0 232 316 662794225 662794309 3.730000e-21 113.0
13 TraesCS7B01G100700 chr5B 80.769 130 21 4 1 128 142248041 142247914 1.040000e-16 99.0
14 TraesCS7B01G100700 chr2B 91.765 85 7 0 232 316 9989233 9989149 8.010000e-23 119.0
15 TraesCS7B01G100700 chr2B 89.024 82 9 0 232 313 640565107 640565188 8.070000e-18 102.0
16 TraesCS7B01G100700 chr5D 90.588 85 8 0 232 316 97563034 97563118 3.730000e-21 113.0
17 TraesCS7B01G100700 chr5D 88.235 85 10 0 232 316 376305318 376305402 8.070000e-18 102.0
18 TraesCS7B01G100700 chr5D 77.439 164 27 7 488 650 141427207 141427053 6.280000e-14 89.8
19 TraesCS7B01G100700 chr3B 90.588 85 8 0 232 316 484212617 484212701 3.730000e-21 113.0
20 TraesCS7B01G100700 chr2D 89.535 86 9 0 231 316 495786049 495785964 4.820000e-20 110.0
21 TraesCS7B01G100700 chr2D 85.714 63 8 1 547 608 378382832 378382894 1.060000e-06 65.8
22 TraesCS7B01G100700 chr1B 88.235 85 10 0 232 316 75481085 75481169 8.070000e-18 102.0
23 TraesCS7B01G100700 chr2A 78.065 155 23 6 483 634 132874542 132874688 2.260000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G100700 chr7B 115239063 115243619 4556 True 8416.000 8416 100.0000 1 4557 1 chr7B.!!$R1 4556
1 TraesCS7B01G100700 chr7A 154386333 154390795 4462 True 1291.025 4466 87.9375 339 4557 4 chr7A.!!$R1 4218
2 TraesCS7B01G100700 chr7D 153298426 153303219 4793 True 1246.750 2361 88.8720 313 4557 4 chr7D.!!$R1 4244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.179179 GGCGACTGCTTTTCTGCATC 60.179 55.0 0.0 0.0 42.48 3.91 F
1475 2135 0.178984 TCAGACACCACACCCGAGTA 60.179 55.0 0.0 0.0 0.00 2.59 F
2068 2735 0.178903 AGTGCCTACTTGACTGGGGA 60.179 55.0 0.0 0.0 31.66 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2735 0.251742 TGGCAAAGCATTAGTGGGCT 60.252 50.0 0.0 0.0 43.46 5.19 R
2606 3276 1.092348 GGACCCAGGATTGTAAACGC 58.908 55.0 0.0 0.0 0.00 4.84 R
3719 4403 0.745486 TGTGGCAAGAGGCGATCATG 60.745 55.0 0.0 0.0 46.16 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.181010 CACCATCCCCGGGCTCAG 62.181 72.222 17.73 6.07 0.00 3.35
33 34 4.864334 CATCCCCGGGCTCAGCAC 62.864 72.222 17.73 0.00 0.00 4.40
38 39 4.711949 CCGGGCTCAGCACAGCTT 62.712 66.667 0.00 0.00 36.40 3.74
39 40 2.265739 CGGGCTCAGCACAGCTTA 59.734 61.111 0.00 0.00 36.40 3.09
40 41 1.812922 CGGGCTCAGCACAGCTTAG 60.813 63.158 0.00 0.00 36.40 2.18
42 43 3.495543 GCTCAGCACAGCTTAGCC 58.504 61.111 12.81 0.00 46.40 3.93
43 44 2.459442 GCTCAGCACAGCTTAGCCG 61.459 63.158 12.81 0.00 46.40 5.52
44 45 1.812922 CTCAGCACAGCTTAGCCGG 60.813 63.158 0.00 0.00 36.40 6.13
45 46 3.503363 CAGCACAGCTTAGCCGGC 61.503 66.667 21.89 21.89 36.40 6.13
48 49 2.887568 CACAGCTTAGCCGGCGAG 60.888 66.667 23.20 23.35 34.52 5.03
49 50 4.821589 ACAGCTTAGCCGGCGAGC 62.822 66.667 35.79 35.79 36.68 5.03
51 52 4.214327 AGCTTAGCCGGCGAGCTC 62.214 66.667 38.17 22.28 42.80 4.09
52 53 4.214327 GCTTAGCCGGCGAGCTCT 62.214 66.667 35.54 17.74 43.67 4.09
53 54 2.026879 CTTAGCCGGCGAGCTCTC 59.973 66.667 23.20 3.04 43.67 3.20
54 55 3.492311 CTTAGCCGGCGAGCTCTCC 62.492 68.421 23.20 13.01 43.67 3.71
76 77 4.292178 GCGGAGATGCGAGGGGAG 62.292 72.222 0.00 0.00 0.00 4.30
77 78 3.610669 CGGAGATGCGAGGGGAGG 61.611 72.222 0.00 0.00 0.00 4.30
78 79 3.237741 GGAGATGCGAGGGGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
79 80 2.444895 GAGATGCGAGGGGAGGGT 60.445 66.667 0.00 0.00 0.00 4.34
80 81 2.444895 AGATGCGAGGGGAGGGTC 60.445 66.667 0.00 0.00 0.00 4.46
81 82 3.917760 GATGCGAGGGGAGGGTCG 61.918 72.222 0.00 0.00 39.25 4.79
109 110 4.951963 GCTAGTGGCGGCGGCTAG 62.952 72.222 33.21 26.21 39.81 3.42
110 111 4.286320 CTAGTGGCGGCGGCTAGG 62.286 72.222 33.21 16.76 39.81 3.02
117 118 4.851179 CGGCGGCTAGGGTTTCCC 62.851 72.222 7.61 0.00 45.90 3.97
127 128 4.629523 GGTTTCCCCGTGTCGCCA 62.630 66.667 0.00 0.00 0.00 5.69
128 129 3.351416 GTTTCCCCGTGTCGCCAC 61.351 66.667 0.00 0.00 38.27 5.01
169 170 3.660621 AGGCGACTGCTTTTCTGC 58.339 55.556 0.00 0.00 41.13 4.26
170 171 1.227943 AGGCGACTGCTTTTCTGCA 60.228 52.632 0.00 0.00 41.13 4.41
171 172 0.607489 AGGCGACTGCTTTTCTGCAT 60.607 50.000 0.00 0.00 42.48 3.96
172 173 0.179179 GGCGACTGCTTTTCTGCATC 60.179 55.000 0.00 0.00 42.48 3.91
173 174 0.179179 GCGACTGCTTTTCTGCATCC 60.179 55.000 0.00 0.00 42.48 3.51
174 175 1.446907 CGACTGCTTTTCTGCATCCT 58.553 50.000 0.00 0.00 42.48 3.24
175 176 1.129998 CGACTGCTTTTCTGCATCCTG 59.870 52.381 0.00 0.00 42.48 3.86
176 177 2.430465 GACTGCTTTTCTGCATCCTGA 58.570 47.619 0.00 0.00 42.48 3.86
177 178 3.015327 GACTGCTTTTCTGCATCCTGAT 58.985 45.455 0.00 0.00 42.48 2.90
178 179 2.753452 ACTGCTTTTCTGCATCCTGATG 59.247 45.455 2.72 2.72 42.48 3.07
179 180 2.097036 TGCTTTTCTGCATCCTGATGG 58.903 47.619 9.07 0.00 39.16 3.51
180 181 2.097825 GCTTTTCTGCATCCTGATGGT 58.902 47.619 9.07 0.00 39.16 3.55
181 182 3.282021 GCTTTTCTGCATCCTGATGGTA 58.718 45.455 9.07 0.00 39.16 3.25
182 183 3.314635 GCTTTTCTGCATCCTGATGGTAG 59.685 47.826 9.07 0.26 39.16 3.18
183 184 4.521146 CTTTTCTGCATCCTGATGGTAGT 58.479 43.478 9.07 0.00 39.16 2.73
184 185 4.574674 TTTCTGCATCCTGATGGTAGTT 57.425 40.909 9.07 0.00 39.16 2.24
185 186 4.574674 TTCTGCATCCTGATGGTAGTTT 57.425 40.909 9.07 0.00 39.16 2.66
186 187 5.692115 TTCTGCATCCTGATGGTAGTTTA 57.308 39.130 9.07 0.00 39.16 2.01
187 188 5.692115 TCTGCATCCTGATGGTAGTTTAA 57.308 39.130 9.07 0.00 39.16 1.52
188 189 5.428253 TCTGCATCCTGATGGTAGTTTAAC 58.572 41.667 9.07 0.00 39.16 2.01
189 190 5.045942 TCTGCATCCTGATGGTAGTTTAACA 60.046 40.000 9.07 0.00 39.16 2.41
190 191 4.941263 TGCATCCTGATGGTAGTTTAACAC 59.059 41.667 9.07 0.00 39.16 3.32
191 192 4.941263 GCATCCTGATGGTAGTTTAACACA 59.059 41.667 9.07 0.00 39.16 3.72
192 193 5.163754 GCATCCTGATGGTAGTTTAACACAC 60.164 44.000 9.07 0.00 39.16 3.82
193 194 4.562082 TCCTGATGGTAGTTTAACACACG 58.438 43.478 0.00 0.00 34.23 4.49
194 195 3.124636 CCTGATGGTAGTTTAACACACGC 59.875 47.826 0.00 0.00 0.00 5.34
195 196 3.729966 TGATGGTAGTTTAACACACGCA 58.270 40.909 0.00 0.00 0.00 5.24
196 197 4.127907 TGATGGTAGTTTAACACACGCAA 58.872 39.130 0.00 0.00 0.00 4.85
197 198 3.948196 TGGTAGTTTAACACACGCAAC 57.052 42.857 0.00 0.00 0.00 4.17
198 199 3.268330 TGGTAGTTTAACACACGCAACA 58.732 40.909 0.00 0.00 0.00 3.33
199 200 3.063725 TGGTAGTTTAACACACGCAACAC 59.936 43.478 0.00 0.00 0.00 3.32
219 220 2.587753 CCGAACGGCGCATACCAT 60.588 61.111 10.83 0.00 39.11 3.55
220 221 2.177580 CCGAACGGCGCATACCATT 61.178 57.895 10.83 0.00 39.11 3.16
221 222 1.011242 CGAACGGCGCATACCATTG 60.011 57.895 10.83 0.00 0.00 2.82
222 223 1.298339 GAACGGCGCATACCATTGC 60.298 57.895 10.83 0.00 39.29 3.56
223 224 1.714899 GAACGGCGCATACCATTGCT 61.715 55.000 10.83 0.00 40.54 3.91
224 225 1.714899 AACGGCGCATACCATTGCTC 61.715 55.000 10.83 0.00 40.54 4.26
225 226 2.896801 CGGCGCATACCATTGCTCC 61.897 63.158 10.83 0.00 42.73 4.70
226 227 1.526917 GGCGCATACCATTGCTCCT 60.527 57.895 10.83 0.00 42.83 3.69
227 228 1.650912 GCGCATACCATTGCTCCTG 59.349 57.895 0.30 0.00 40.54 3.86
228 229 1.650912 CGCATACCATTGCTCCTGC 59.349 57.895 0.00 0.00 40.54 4.85
229 230 1.789078 CGCATACCATTGCTCCTGCC 61.789 60.000 0.00 0.00 40.54 4.85
230 231 0.466922 GCATACCATTGCTCCTGCCT 60.467 55.000 0.00 0.00 39.57 4.75
231 232 2.025863 GCATACCATTGCTCCTGCCTT 61.026 52.381 0.00 0.00 39.57 4.35
232 233 2.749466 GCATACCATTGCTCCTGCCTTA 60.749 50.000 0.00 0.00 39.57 2.69
233 234 2.710096 TACCATTGCTCCTGCCTTAC 57.290 50.000 0.00 0.00 38.71 2.34
234 235 0.995024 ACCATTGCTCCTGCCTTACT 59.005 50.000 0.00 0.00 38.71 2.24
235 236 1.065126 ACCATTGCTCCTGCCTTACTC 60.065 52.381 0.00 0.00 38.71 2.59
236 237 1.673168 CATTGCTCCTGCCTTACTCC 58.327 55.000 0.00 0.00 38.71 3.85
237 238 0.548510 ATTGCTCCTGCCTTACTCCC 59.451 55.000 0.00 0.00 38.71 4.30
238 239 0.547712 TTGCTCCTGCCTTACTCCCT 60.548 55.000 0.00 0.00 38.71 4.20
239 240 0.978146 TGCTCCTGCCTTACTCCCTC 60.978 60.000 0.00 0.00 38.71 4.30
240 241 1.691195 GCTCCTGCCTTACTCCCTCC 61.691 65.000 0.00 0.00 0.00 4.30
241 242 1.381327 TCCTGCCTTACTCCCTCCG 60.381 63.158 0.00 0.00 0.00 4.63
242 243 1.686110 CCTGCCTTACTCCCTCCGT 60.686 63.158 0.00 0.00 0.00 4.69
243 244 1.677637 CCTGCCTTACTCCCTCCGTC 61.678 65.000 0.00 0.00 0.00 4.79
244 245 0.684805 CTGCCTTACTCCCTCCGTCT 60.685 60.000 0.00 0.00 0.00 4.18
245 246 0.252103 TGCCTTACTCCCTCCGTCTT 60.252 55.000 0.00 0.00 0.00 3.01
246 247 1.006281 TGCCTTACTCCCTCCGTCTTA 59.994 52.381 0.00 0.00 0.00 2.10
247 248 2.317973 GCCTTACTCCCTCCGTCTTAT 58.682 52.381 0.00 0.00 0.00 1.73
248 249 3.117398 TGCCTTACTCCCTCCGTCTTATA 60.117 47.826 0.00 0.00 0.00 0.98
249 250 3.893813 GCCTTACTCCCTCCGTCTTATAA 59.106 47.826 0.00 0.00 0.00 0.98
250 251 4.527427 GCCTTACTCCCTCCGTCTTATAAT 59.473 45.833 0.00 0.00 0.00 1.28
251 252 5.713861 GCCTTACTCCCTCCGTCTTATAATA 59.286 44.000 0.00 0.00 0.00 0.98
252 253 6.380560 GCCTTACTCCCTCCGTCTTATAATAT 59.619 42.308 0.00 0.00 0.00 1.28
253 254 7.559170 GCCTTACTCCCTCCGTCTTATAATATA 59.441 40.741 0.00 0.00 0.00 0.86
254 255 9.471702 CCTTACTCCCTCCGTCTTATAATATAA 57.528 37.037 0.00 0.00 0.00 0.98
258 259 9.022884 ACTCCCTCCGTCTTATAATATAAGAAC 57.977 37.037 20.58 14.59 35.58 3.01
259 260 8.048534 TCCCTCCGTCTTATAATATAAGAACG 57.951 38.462 20.58 21.95 35.58 3.95
260 261 7.667219 TCCCTCCGTCTTATAATATAAGAACGT 59.333 37.037 20.58 0.00 35.58 3.99
261 262 8.302438 CCCTCCGTCTTATAATATAAGAACGTT 58.698 37.037 20.58 0.00 35.58 3.99
262 263 9.688592 CCTCCGTCTTATAATATAAGAACGTTT 57.311 33.333 20.58 0.00 35.58 3.60
275 276 7.781548 ATAAGAACGTTTTTGACAGTAGTGT 57.218 32.000 13.87 1.90 40.71 3.55
276 277 8.876275 ATAAGAACGTTTTTGACAGTAGTGTA 57.124 30.769 13.87 0.00 36.88 2.90
277 278 6.823678 AGAACGTTTTTGACAGTAGTGTAG 57.176 37.500 0.46 0.00 36.88 2.74
278 279 6.335777 AGAACGTTTTTGACAGTAGTGTAGT 58.664 36.000 0.46 0.00 36.88 2.73
279 280 5.961395 ACGTTTTTGACAGTAGTGTAGTG 57.039 39.130 2.39 0.00 36.88 2.74
280 281 5.413499 ACGTTTTTGACAGTAGTGTAGTGT 58.587 37.500 2.39 0.00 44.60 3.55
281 282 5.870978 ACGTTTTTGACAGTAGTGTAGTGTT 59.129 36.000 2.39 0.00 42.13 3.32
282 283 7.035004 ACGTTTTTGACAGTAGTGTAGTGTTA 58.965 34.615 2.39 0.00 42.13 2.41
283 284 7.545265 ACGTTTTTGACAGTAGTGTAGTGTTAA 59.455 33.333 2.39 0.00 42.13 2.01
284 285 8.382130 CGTTTTTGACAGTAGTGTAGTGTTAAA 58.618 33.333 2.39 7.43 42.29 1.52
288 289 8.774890 TTGACAGTAGTGTAGTGTTAAAAACA 57.225 30.769 2.39 0.00 42.13 2.83
289 290 8.951787 TGACAGTAGTGTAGTGTTAAAAACAT 57.048 30.769 2.39 0.00 42.13 2.71
290 291 9.386010 TGACAGTAGTGTAGTGTTAAAAACATT 57.614 29.630 2.39 0.00 42.13 2.71
291 292 9.859692 GACAGTAGTGTAGTGTTAAAAACATTC 57.140 33.333 2.39 0.00 42.13 2.67
292 293 9.609346 ACAGTAGTGTAGTGTTAAAAACATTCT 57.391 29.630 0.00 0.00 39.19 2.40
324 325 6.140377 TGGGACAAAGGGAGTATTTTTCTTT 58.860 36.000 0.00 0.00 31.92 2.52
328 329 8.857098 GGACAAAGGGAGTATTTTTCTTTAACT 58.143 33.333 0.00 0.00 0.00 2.24
338 339 5.898630 TTTTTCTTTAACTTCATTGGCGC 57.101 34.783 0.00 0.00 0.00 6.53
341 342 2.095263 TCTTTAACTTCATTGGCGCTGC 60.095 45.455 7.64 0.00 0.00 5.25
390 391 8.592809 TGTTGAACTATTTATGCAAAATCCCTT 58.407 29.630 9.24 2.53 0.00 3.95
427 428 6.363357 AGAAATTTTCAATTCCTTTTCTCGCG 59.637 34.615 11.53 0.00 29.87 5.87
433 434 4.515944 TCAATTCCTTTTCTCGCGGTTTTA 59.484 37.500 6.13 0.00 0.00 1.52
466 467 5.931294 TCCAGACGAGATAGACACTATCTT 58.069 41.667 18.29 7.44 39.04 2.40
588 590 4.406069 CATGGAAGATGTTTTAGTGCGTG 58.594 43.478 0.00 0.00 0.00 5.34
598 600 0.669619 TTAGTGCGTGAGGTTCGTGA 59.330 50.000 0.00 0.00 0.00 4.35
602 604 1.263217 GTGCGTGAGGTTCGTGAAAAT 59.737 47.619 0.00 0.00 0.00 1.82
609 611 5.578776 GTGAGGTTCGTGAAAATTTTCAGT 58.421 37.500 29.34 12.83 46.80 3.41
611 613 6.530181 GTGAGGTTCGTGAAAATTTTCAGTTT 59.470 34.615 29.34 14.40 46.80 2.66
612 614 6.529829 TGAGGTTCGTGAAAATTTTCAGTTTG 59.470 34.615 29.34 19.88 46.80 2.93
643 645 6.538021 ACATCTGAGTAGCTCTATGCAAAAAG 59.462 38.462 0.00 0.00 45.94 2.27
644 646 6.286240 TCTGAGTAGCTCTATGCAAAAAGA 57.714 37.500 0.00 0.00 45.94 2.52
645 647 6.882656 TCTGAGTAGCTCTATGCAAAAAGAT 58.117 36.000 0.00 0.00 45.94 2.40
654 656 7.983484 AGCTCTATGCAAAAAGATAAATTTGGG 59.017 33.333 0.00 0.00 45.94 4.12
655 657 7.981225 GCTCTATGCAAAAAGATAAATTTGGGA 59.019 33.333 0.00 0.00 42.31 4.37
684 686 9.822185 AAAAATGAATATTTGCTATCTCAACCC 57.178 29.630 0.00 0.00 36.65 4.11
697 699 9.705290 TGCTATCTCAACCCTTTTTAATTTTTC 57.295 29.630 0.00 0.00 0.00 2.29
698 700 9.151471 GCTATCTCAACCCTTTTTAATTTTTCC 57.849 33.333 0.00 0.00 0.00 3.13
702 704 7.984617 TCTCAACCCTTTTTAATTTTTCCAGTG 59.015 33.333 0.00 0.00 0.00 3.66
703 705 7.051000 TCAACCCTTTTTAATTTTTCCAGTGG 58.949 34.615 1.40 1.40 0.00 4.00
704 706 6.816616 ACCCTTTTTAATTTTTCCAGTGGA 57.183 33.333 8.12 8.12 0.00 4.02
705 707 7.387265 ACCCTTTTTAATTTTTCCAGTGGAT 57.613 32.000 14.00 0.00 0.00 3.41
707 709 9.111519 ACCCTTTTTAATTTTTCCAGTGGATAT 57.888 29.630 14.00 4.43 0.00 1.63
713 715 9.762381 TTTAATTTTTCCAGTGGATATGTACCT 57.238 29.630 14.00 0.00 0.00 3.08
714 716 9.762381 TTAATTTTTCCAGTGGATATGTACCTT 57.238 29.630 14.00 2.17 0.00 3.50
715 717 8.664669 AATTTTTCCAGTGGATATGTACCTTT 57.335 30.769 14.00 0.00 0.00 3.11
716 718 7.696992 TTTTTCCAGTGGATATGTACCTTTC 57.303 36.000 14.00 0.00 0.00 2.62
718 720 4.367166 TCCAGTGGATATGTACCTTTCCA 58.633 43.478 8.12 6.29 35.93 3.53
719 721 4.408921 TCCAGTGGATATGTACCTTTCCAG 59.591 45.833 8.12 1.65 38.87 3.86
775 1033 6.925211 TCGGAAATGAATATTCGCTATCTCT 58.075 36.000 10.80 0.00 0.00 3.10
777 1035 7.968956 TCGGAAATGAATATTCGCTATCTCTAC 59.031 37.037 10.80 0.00 0.00 2.59
861 1119 0.546122 TGAGTAAATGCGGCCCATCT 59.454 50.000 7.12 1.45 31.43 2.90
908 1166 1.209504 TCCCTATCTGCAACGGGAAAG 59.790 52.381 8.94 0.00 42.54 2.62
927 1186 1.670083 GGCCTACAAAACGTCGCCT 60.670 57.895 0.00 0.00 39.20 5.52
950 1209 4.020617 CAGGGCAGCGAGTCCCAA 62.021 66.667 8.66 0.00 45.84 4.12
952 1211 1.689233 AGGGCAGCGAGTCCCAATA 60.689 57.895 8.66 0.00 45.84 1.90
1015 1275 4.776322 TCATGCGTTCCCCTGCCG 62.776 66.667 0.00 0.00 0.00 5.69
1194 1454 3.316573 CTGGGGCGTCCTCAGGTTC 62.317 68.421 15.59 0.00 36.20 3.62
1195 1455 4.097361 GGGGCGTCCTCAGGTTCC 62.097 72.222 5.77 0.00 0.00 3.62
1212 1472 2.680965 CCCCCGCCAAATACCACT 59.319 61.111 0.00 0.00 0.00 4.00
1217 1478 0.463833 CCGCCAAATACCACTCCCTC 60.464 60.000 0.00 0.00 0.00 4.30
1303 1946 1.086696 GCCGCTAGTTCAGAATTGCA 58.913 50.000 0.00 0.00 0.00 4.08
1310 1953 1.615392 AGTTCAGAATTGCAGTTGGGC 59.385 47.619 0.00 0.00 0.00 5.36
1342 1985 3.746492 ACTGAACCGCAATTGAAGTACTC 59.254 43.478 10.34 1.79 0.00 2.59
1343 1986 3.071479 TGAACCGCAATTGAAGTACTCC 58.929 45.455 10.34 0.00 0.00 3.85
1344 1987 2.851263 ACCGCAATTGAAGTACTCCA 57.149 45.000 10.34 0.00 0.00 3.86
1345 1988 2.423577 ACCGCAATTGAAGTACTCCAC 58.576 47.619 10.34 0.00 0.00 4.02
1388 2036 1.147473 CCTTTGGGAAATTGTTGCGC 58.853 50.000 0.00 0.00 33.58 6.09
1404 2052 2.778299 TGCGCTACTTTGGAGAATTGT 58.222 42.857 9.73 0.00 0.00 2.71
1412 2060 4.336280 ACTTTGGAGAATTGTAGCCCTTC 58.664 43.478 0.00 0.00 0.00 3.46
1459 2119 2.163818 TTTTAGCGGTCAGGTGTCAG 57.836 50.000 0.00 0.00 0.00 3.51
1460 2120 1.334160 TTTAGCGGTCAGGTGTCAGA 58.666 50.000 0.00 0.00 0.00 3.27
1461 2121 0.601558 TTAGCGGTCAGGTGTCAGAC 59.398 55.000 0.00 0.00 0.00 3.51
1462 2122 0.538746 TAGCGGTCAGGTGTCAGACA 60.539 55.000 0.00 0.00 36.50 3.41
1475 2135 0.178984 TCAGACACCACACCCGAGTA 60.179 55.000 0.00 0.00 0.00 2.59
1484 2144 1.067354 CACACCCGAGTACCCAACTAC 60.067 57.143 0.00 0.00 39.07 2.73
1493 2153 4.096081 CGAGTACCCAACTACCTCAACTAG 59.904 50.000 0.00 0.00 39.07 2.57
1497 2157 3.257624 ACCCAACTACCTCAACTAGTTCG 59.742 47.826 4.77 2.02 33.05 3.95
1572 2233 6.092122 CGAGACCAATGCTAAGTTGAAACATA 59.908 38.462 0.00 0.00 0.00 2.29
1573 2234 7.145932 AGACCAATGCTAAGTTGAAACATAC 57.854 36.000 0.00 0.00 0.00 2.39
1574 2235 6.942576 AGACCAATGCTAAGTTGAAACATACT 59.057 34.615 0.00 0.00 0.00 2.12
1615 2276 7.132694 TGTTTGTTATGCTGAGTTCAGTATG 57.867 36.000 18.99 0.00 46.33 2.39
1631 2292 9.642343 AGTTCAGTATGTATAACTGTCCATCTA 57.358 33.333 3.40 0.00 43.88 1.98
1726 2388 3.753815 TCATGTGCAACTCAATCTCCAA 58.246 40.909 0.00 0.00 38.04 3.53
1727 2389 4.338012 TCATGTGCAACTCAATCTCCAAT 58.662 39.130 0.00 0.00 38.04 3.16
1728 2390 4.768448 TCATGTGCAACTCAATCTCCAATT 59.232 37.500 0.00 0.00 38.04 2.32
1729 2391 4.771590 TGTGCAACTCAATCTCCAATTC 57.228 40.909 0.00 0.00 38.04 2.17
1735 2397 5.450137 GCAACTCAATCTCCAATTCTCCATG 60.450 44.000 0.00 0.00 0.00 3.66
1743 2405 7.850935 ATCTCCAATTCTCCATGCAATAAAT 57.149 32.000 0.00 0.00 0.00 1.40
1773 2435 3.804325 CACAACTCACAGTGAATCGACTT 59.196 43.478 4.41 0.00 37.97 3.01
1791 2453 4.615541 CGACTTCGAAATAAGCAAAAACCC 59.384 41.667 0.00 0.00 43.02 4.11
1792 2454 5.523438 ACTTCGAAATAAGCAAAAACCCA 57.477 34.783 0.00 0.00 0.00 4.51
1793 2455 5.528870 ACTTCGAAATAAGCAAAAACCCAG 58.471 37.500 0.00 0.00 0.00 4.45
1794 2456 5.300792 ACTTCGAAATAAGCAAAAACCCAGA 59.699 36.000 0.00 0.00 0.00 3.86
1795 2457 5.116069 TCGAAATAAGCAAAAACCCAGAC 57.884 39.130 0.00 0.00 0.00 3.51
1810 2472 7.923414 AAACCCAGACAAAATAAGTAGCTAG 57.077 36.000 0.00 0.00 0.00 3.42
1861 2523 9.693739 AATCATATTACATGTTTAGAACCACCA 57.306 29.630 2.30 0.00 0.00 4.17
1907 2569 3.644966 TTCCACTTGCCCATAGGTTAG 57.355 47.619 0.00 0.00 34.57 2.34
1919 2581 4.080975 CCCATAGGTTAGTTTCGGTGGTTA 60.081 45.833 0.00 0.00 0.00 2.85
1925 2592 1.676635 GTTTCGGTGGTTAGGGGGC 60.677 63.158 0.00 0.00 0.00 5.80
1970 2637 4.547671 TCCCCAGTATCTGTAGAAGGAAG 58.452 47.826 0.00 0.00 0.00 3.46
2024 2691 9.713740 CTTGTTAGTTTGATTCTTGCTATGATC 57.286 33.333 0.00 0.00 0.00 2.92
2068 2735 0.178903 AGTGCCTACTTGACTGGGGA 60.179 55.000 0.00 0.00 31.66 4.81
2071 2738 1.908483 CCTACTTGACTGGGGAGCC 59.092 63.158 0.00 0.00 0.00 4.70
2130 2797 0.461961 GTGATCTAAGTGGCGCTCCT 59.538 55.000 7.64 0.00 0.00 3.69
2141 2808 0.738975 GGCGCTCCTTTTGGGTAATC 59.261 55.000 7.64 0.00 40.87 1.75
2427 3094 6.313744 ACATGTGCAAAACTTACTCTTACC 57.686 37.500 0.00 0.00 0.00 2.85
2545 3215 9.447279 TTCAATCCTCTATTCCTGGTTTCTATA 57.553 33.333 0.00 0.00 0.00 1.31
2606 3276 5.525012 TCATCATTATCCTTGTGCTTTCTCG 59.475 40.000 0.00 0.00 0.00 4.04
2615 3285 1.934525 TGTGCTTTCTCGCGTTTACAA 59.065 42.857 5.77 0.00 0.00 2.41
2619 3289 2.415512 GCTTTCTCGCGTTTACAATCCT 59.584 45.455 5.77 0.00 0.00 3.24
2629 3299 4.189231 CGTTTACAATCCTGGGTCCTAAG 58.811 47.826 0.00 0.00 0.00 2.18
2632 3302 3.721087 ACAATCCTGGGTCCTAAGTTG 57.279 47.619 0.00 0.00 0.00 3.16
2633 3303 2.986728 ACAATCCTGGGTCCTAAGTTGT 59.013 45.455 0.00 0.00 0.00 3.32
2634 3304 4.172807 ACAATCCTGGGTCCTAAGTTGTA 58.827 43.478 0.00 0.00 0.00 2.41
2635 3305 4.019591 ACAATCCTGGGTCCTAAGTTGTAC 60.020 45.833 0.00 0.00 0.00 2.90
2636 3306 3.263369 TCCTGGGTCCTAAGTTGTACA 57.737 47.619 0.00 0.00 0.00 2.90
2637 3307 3.170717 TCCTGGGTCCTAAGTTGTACAG 58.829 50.000 0.00 0.00 0.00 2.74
2639 3309 4.091549 CCTGGGTCCTAAGTTGTACAGTA 58.908 47.826 0.00 0.00 0.00 2.74
2640 3310 4.081807 CCTGGGTCCTAAGTTGTACAGTAC 60.082 50.000 3.49 3.49 0.00 2.73
2667 3343 4.460382 CCATAGACACTTCTTTGTTGCCAT 59.540 41.667 0.00 0.00 30.86 4.40
2668 3344 5.647658 CCATAGACACTTCTTTGTTGCCATA 59.352 40.000 0.00 0.00 30.86 2.74
2766 3442 5.580022 ACCATATTTGGAAGTAGCAACCTT 58.420 37.500 9.40 0.00 46.92 3.50
2798 3474 3.616219 AGTGACAACTTGGTGCTGTTAA 58.384 40.909 0.00 0.00 30.14 2.01
2802 3478 3.361786 ACAACTTGGTGCTGTTAACCTT 58.638 40.909 2.48 0.00 38.60 3.50
2908 3584 7.659390 GCTATGCCTCTTAAAGTATCTGTCATT 59.341 37.037 0.00 0.00 0.00 2.57
2960 3639 1.397692 GAGATCAAGCACTGAAGCAGC 59.602 52.381 0.00 0.00 37.67 5.25
2961 3640 0.096628 GATCAAGCACTGAAGCAGCG 59.903 55.000 0.00 0.00 37.67 5.18
2982 3661 3.952323 CGGAGGAGATGTACACCTTTCTA 59.048 47.826 0.00 0.00 39.58 2.10
3015 3694 8.394971 TCCTAAAATGCACATGTATAGAATGG 57.605 34.615 0.00 0.00 0.00 3.16
3027 3706 7.933577 ACATGTATAGAATGGGACTGTATGTTG 59.066 37.037 0.00 0.00 0.00 3.33
3028 3707 7.432148 TGTATAGAATGGGACTGTATGTTGT 57.568 36.000 0.00 0.00 0.00 3.32
3037 3716 3.244422 GGACTGTATGTTGTGGAGACCAA 60.244 47.826 0.00 0.00 34.18 3.67
3095 3774 5.867174 TGTAATCACGACCTGAAGTAACATG 59.133 40.000 0.00 0.00 30.60 3.21
3157 3836 0.034756 AAGCGGATTTGGCCAAAACC 59.965 50.000 35.93 35.93 39.14 3.27
3440 4119 5.774498 ACCTTTCAAATCTGAGTTTCACC 57.226 39.130 0.00 0.00 31.69 4.02
3654 4338 6.742559 ACTGTAATGACCTACGGGATTAAT 57.257 37.500 0.00 0.00 33.19 1.40
3719 4403 1.228154 AGCCCAAGAACCGTTGTCC 60.228 57.895 0.00 0.00 0.00 4.02
3804 4518 2.795389 GTTCGAAAGCGGCGTTGC 60.795 61.111 9.37 0.00 38.28 4.17
3805 4519 4.362946 TTCGAAAGCGGCGTTGCG 62.363 61.111 9.37 12.21 40.67 4.85
3823 4538 3.869065 TGCGGTAGGAATTCTTAAGGTG 58.131 45.455 5.23 0.00 0.00 4.00
3885 4604 3.641437 TTGGCAGTGTAAAGCAACATC 57.359 42.857 0.00 0.00 0.00 3.06
3890 4609 5.106197 TGGCAGTGTAAAGCAACATCTATTG 60.106 40.000 0.00 0.00 0.00 1.90
3901 4620 5.931532 GCAACATCTATTGCGCAATATACT 58.068 37.500 35.75 22.76 45.08 2.12
3902 4621 6.017933 GCAACATCTATTGCGCAATATACTC 58.982 40.000 35.75 19.96 45.08 2.59
3903 4622 6.537566 CAACATCTATTGCGCAATATACTCC 58.462 40.000 35.75 0.00 33.29 3.85
3904 4623 4.864806 ACATCTATTGCGCAATATACTCCG 59.135 41.667 35.75 24.88 33.29 4.63
4128 4858 0.110599 CGCGCCAACGTGTTGAATTA 60.111 50.000 14.06 0.00 44.66 1.40
4147 4877 7.768240 TGAATTATTCGAGCTGAGTTGTACTA 58.232 34.615 0.00 0.00 0.00 1.82
4149 4879 6.754702 TTATTCGAGCTGAGTTGTACTACT 57.245 37.500 9.83 9.83 0.00 2.57
4150 4880 7.854557 TTATTCGAGCTGAGTTGTACTACTA 57.145 36.000 10.02 0.00 0.00 1.82
4213 5032 3.550820 TGTTCTTTCTTGCAACTAGGCA 58.449 40.909 0.00 0.00 43.19 4.75
4225 5044 3.747193 CAACTAGGCACTGTTTATTGCG 58.253 45.455 0.00 0.00 41.52 4.85
4226 5045 3.053831 ACTAGGCACTGTTTATTGCGT 57.946 42.857 0.00 0.00 41.52 5.24
4231 5050 2.287308 GGCACTGTTTATTGCGTGAACA 60.287 45.455 0.00 0.56 39.81 3.18
4250 5069 7.257722 GTGAACAAAACCAGATTTTTCTCTGA 58.742 34.615 2.73 0.00 44.48 3.27
4270 5089 0.393448 TGTACGGCCTGCAACTTGTA 59.607 50.000 0.00 0.00 0.00 2.41
4283 5102 7.009540 GCCTGCAACTTGTATTCAAAATATGTC 59.990 37.037 0.00 0.00 32.87 3.06
4306 5147 7.093727 TGTCTTTGTTACCAATTCAAAAGGTCA 60.094 33.333 0.00 0.00 36.87 4.02
4341 5182 0.031043 CTCAGCTGGATCTCTGAGCG 59.969 60.000 15.13 8.50 46.45 5.03
4360 5201 4.472286 AGCGGAAAATGTGAATTACGTTG 58.528 39.130 0.00 0.00 38.50 4.10
4410 5265 1.066002 CAGGTGTGTTTGGTCAGCAAG 59.934 52.381 0.00 0.00 34.97 4.01
4480 5335 2.113860 AAAGCAGCCGAAATCAGCTA 57.886 45.000 0.00 0.00 37.18 3.32
4497 5352 9.896645 AAATCAGCTAATGAAGAGTGAATTAGA 57.103 29.630 5.97 0.00 42.53 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.181010 CTGAGCCCGGGGATGGTG 62.181 72.222 25.28 0.00 0.00 4.17
16 17 4.864334 GTGCTGAGCCCGGGGATG 62.864 72.222 25.28 0.00 0.00 3.51
21 22 3.315142 TAAGCTGTGCTGAGCCCGG 62.315 63.158 0.23 0.00 39.62 5.73
22 23 1.812922 CTAAGCTGTGCTGAGCCCG 60.813 63.158 0.23 0.00 39.62 6.13
23 24 4.215349 CTAAGCTGTGCTGAGCCC 57.785 61.111 0.23 0.00 39.62 5.19
26 27 1.812922 CCGGCTAAGCTGTGCTGAG 60.813 63.158 18.25 0.00 40.02 3.35
27 28 2.265739 CCGGCTAAGCTGTGCTGA 59.734 61.111 18.25 0.00 39.62 4.26
28 29 3.503363 GCCGGCTAAGCTGTGCTG 61.503 66.667 22.15 11.74 39.62 4.41
31 32 2.887568 CTCGCCGGCTAAGCTGTG 60.888 66.667 26.68 6.06 32.22 3.66
32 33 4.821589 GCTCGCCGGCTAAGCTGT 62.822 66.667 31.91 0.00 32.22 4.40
33 34 4.521062 AGCTCGCCGGCTAAGCTG 62.521 66.667 37.47 19.16 44.41 4.24
35 36 4.214327 AGAGCTCGCCGGCTAAGC 62.214 66.667 32.06 32.06 43.20 3.09
36 37 2.026879 GAGAGCTCGCCGGCTAAG 59.973 66.667 26.68 21.99 43.20 2.18
37 38 3.528370 GGAGAGCTCGCCGGCTAA 61.528 66.667 26.68 11.82 43.20 3.09
59 60 4.292178 CTCCCCTCGCATCTCCGC 62.292 72.222 0.00 0.00 0.00 5.54
60 61 3.610669 CCTCCCCTCGCATCTCCG 61.611 72.222 0.00 0.00 0.00 4.63
61 62 3.237741 CCCTCCCCTCGCATCTCC 61.238 72.222 0.00 0.00 0.00 3.71
62 63 2.444895 ACCCTCCCCTCGCATCTC 60.445 66.667 0.00 0.00 0.00 2.75
63 64 2.444895 GACCCTCCCCTCGCATCT 60.445 66.667 0.00 0.00 0.00 2.90
64 65 3.917760 CGACCCTCCCCTCGCATC 61.918 72.222 0.00 0.00 0.00 3.91
92 93 4.951963 CTAGCCGCCGCCACTAGC 62.952 72.222 0.00 0.00 34.57 3.42
93 94 4.286320 CCTAGCCGCCGCCACTAG 62.286 72.222 7.17 7.17 34.57 2.57
110 111 4.629523 TGGCGACACGGGGAAACC 62.630 66.667 0.00 0.00 44.14 3.27
151 152 1.208614 GCAGAAAAGCAGTCGCCTG 59.791 57.895 0.00 0.00 41.91 4.85
152 153 1.227943 TGCAGAAAAGCAGTCGCCT 60.228 52.632 0.00 0.00 40.11 5.52
153 154 3.343972 TGCAGAAAAGCAGTCGCC 58.656 55.556 0.00 0.00 40.11 5.54
157 158 6.877981 ACCATCAGGATGCAGAAAAGCAGT 62.878 45.833 3.72 0.00 42.84 4.40
158 159 4.434593 ACCATCAGGATGCAGAAAAGCAG 61.435 47.826 3.72 0.00 42.84 4.24
159 160 2.555892 ACCATCAGGATGCAGAAAAGCA 60.556 45.455 3.72 0.00 43.39 3.91
160 161 2.097825 ACCATCAGGATGCAGAAAAGC 58.902 47.619 3.72 0.00 37.49 3.51
161 162 4.521146 ACTACCATCAGGATGCAGAAAAG 58.479 43.478 13.02 3.99 37.49 2.27
162 163 4.574674 ACTACCATCAGGATGCAGAAAA 57.425 40.909 13.02 0.00 37.49 2.29
163 164 4.574674 AACTACCATCAGGATGCAGAAA 57.425 40.909 13.02 0.00 37.49 2.52
164 165 4.574674 AAACTACCATCAGGATGCAGAA 57.425 40.909 13.02 0.00 37.49 3.02
165 166 5.045942 TGTTAAACTACCATCAGGATGCAGA 60.046 40.000 13.02 0.00 37.49 4.26
166 167 5.065218 GTGTTAAACTACCATCAGGATGCAG 59.935 44.000 3.72 5.83 37.49 4.41
167 168 4.941263 GTGTTAAACTACCATCAGGATGCA 59.059 41.667 3.72 0.00 37.49 3.96
168 169 4.941263 TGTGTTAAACTACCATCAGGATGC 59.059 41.667 3.72 0.00 37.49 3.91
169 170 5.063438 CGTGTGTTAAACTACCATCAGGATG 59.937 44.000 2.24 2.24 38.69 3.51
170 171 5.175859 CGTGTGTTAAACTACCATCAGGAT 58.824 41.667 0.00 0.00 38.69 3.24
171 172 4.562082 CGTGTGTTAAACTACCATCAGGA 58.438 43.478 0.00 0.00 38.69 3.86
172 173 3.124636 GCGTGTGTTAAACTACCATCAGG 59.875 47.826 0.00 0.00 42.21 3.86
173 174 3.743911 TGCGTGTGTTAAACTACCATCAG 59.256 43.478 0.00 0.00 0.00 2.90
174 175 3.729966 TGCGTGTGTTAAACTACCATCA 58.270 40.909 0.00 0.00 0.00 3.07
175 176 4.024725 TGTTGCGTGTGTTAAACTACCATC 60.025 41.667 0.00 0.00 0.00 3.51
176 177 3.878103 TGTTGCGTGTGTTAAACTACCAT 59.122 39.130 0.00 0.00 0.00 3.55
177 178 3.063725 GTGTTGCGTGTGTTAAACTACCA 59.936 43.478 0.00 0.00 0.00 3.25
178 179 3.610495 GTGTTGCGTGTGTTAAACTACC 58.390 45.455 0.00 0.00 0.00 3.18
179 180 3.274202 CGTGTTGCGTGTGTTAAACTAC 58.726 45.455 0.00 0.00 35.54 2.73
180 181 2.284684 CCGTGTTGCGTGTGTTAAACTA 59.715 45.455 0.00 0.00 39.32 2.24
181 182 1.062880 CCGTGTTGCGTGTGTTAAACT 59.937 47.619 0.00 0.00 39.32 2.66
182 183 1.458746 CCGTGTTGCGTGTGTTAAAC 58.541 50.000 0.00 0.00 39.32 2.01
183 184 0.248134 GCCGTGTTGCGTGTGTTAAA 60.248 50.000 0.00 0.00 39.32 1.52
184 185 1.352404 GCCGTGTTGCGTGTGTTAA 59.648 52.632 0.00 0.00 39.32 2.01
185 186 2.535788 GGCCGTGTTGCGTGTGTTA 61.536 57.895 0.00 0.00 39.32 2.41
186 187 3.883180 GGCCGTGTTGCGTGTGTT 61.883 61.111 0.00 0.00 39.32 3.32
190 191 4.659874 GTTCGGCCGTGTTGCGTG 62.660 66.667 27.15 0.00 39.32 5.34
202 203 2.177580 AATGGTATGCGCCGTTCGG 61.178 57.895 4.18 6.90 38.94 4.30
203 204 1.011242 CAATGGTATGCGCCGTTCG 60.011 57.895 4.18 0.00 35.70 3.95
204 205 1.298339 GCAATGGTATGCGCCGTTC 60.298 57.895 4.18 0.00 35.70 3.95
205 206 2.798009 GCAATGGTATGCGCCGTT 59.202 55.556 4.18 0.00 38.20 4.44
211 212 0.466922 AGGCAGGAGCAATGGTATGC 60.467 55.000 12.05 12.05 46.78 3.14
212 213 2.062971 AAGGCAGGAGCAATGGTATG 57.937 50.000 0.00 0.00 44.61 2.39
213 214 2.780010 AGTAAGGCAGGAGCAATGGTAT 59.220 45.455 0.00 0.00 44.61 2.73
214 215 2.170607 GAGTAAGGCAGGAGCAATGGTA 59.829 50.000 0.00 0.00 44.61 3.25
215 216 0.995024 AGTAAGGCAGGAGCAATGGT 59.005 50.000 0.00 0.00 44.61 3.55
216 217 1.673168 GAGTAAGGCAGGAGCAATGG 58.327 55.000 0.00 0.00 44.61 3.16
217 218 1.673168 GGAGTAAGGCAGGAGCAATG 58.327 55.000 0.00 0.00 44.61 2.82
218 219 0.548510 GGGAGTAAGGCAGGAGCAAT 59.451 55.000 0.00 0.00 44.61 3.56
219 220 0.547712 AGGGAGTAAGGCAGGAGCAA 60.548 55.000 0.00 0.00 44.61 3.91
220 221 0.978146 GAGGGAGTAAGGCAGGAGCA 60.978 60.000 0.00 0.00 44.61 4.26
221 222 1.691195 GGAGGGAGTAAGGCAGGAGC 61.691 65.000 0.00 0.00 41.10 4.70
222 223 1.395826 CGGAGGGAGTAAGGCAGGAG 61.396 65.000 0.00 0.00 0.00 3.69
223 224 1.381327 CGGAGGGAGTAAGGCAGGA 60.381 63.158 0.00 0.00 0.00 3.86
224 225 1.677637 GACGGAGGGAGTAAGGCAGG 61.678 65.000 0.00 0.00 0.00 4.85
225 226 0.684805 AGACGGAGGGAGTAAGGCAG 60.685 60.000 0.00 0.00 0.00 4.85
226 227 0.252103 AAGACGGAGGGAGTAAGGCA 60.252 55.000 0.00 0.00 0.00 4.75
227 228 1.772836 TAAGACGGAGGGAGTAAGGC 58.227 55.000 0.00 0.00 0.00 4.35
228 229 7.957992 ATATTATAAGACGGAGGGAGTAAGG 57.042 40.000 0.00 0.00 0.00 2.69
232 233 9.022884 GTTCTTATATTATAAGACGGAGGGAGT 57.977 37.037 20.71 0.00 33.73 3.85
233 234 8.182881 CGTTCTTATATTATAAGACGGAGGGAG 58.817 40.741 20.71 7.16 33.73 4.30
234 235 7.667219 ACGTTCTTATATTATAAGACGGAGGGA 59.333 37.037 28.12 14.56 35.02 4.20
235 236 7.824672 ACGTTCTTATATTATAAGACGGAGGG 58.175 38.462 28.12 17.47 35.02 4.30
236 237 9.688592 AAACGTTCTTATATTATAAGACGGAGG 57.311 33.333 28.12 20.69 35.02 4.30
249 250 9.485206 ACACTACTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
250 251 8.876275 ACACTACTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
251 252 7.781548 ACACTACTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
252 253 7.975616 ACTACACTACTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 0.00 2.10
253 254 6.815142 ACTACACTACTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 0.00 2.52
254 255 6.255020 CACTACACTACTGTCAAAAACGTTCT 59.745 38.462 0.00 0.00 0.00 3.01
255 256 6.035327 ACACTACACTACTGTCAAAAACGTTC 59.965 38.462 0.00 0.00 0.00 3.95
256 257 5.870978 ACACTACACTACTGTCAAAAACGTT 59.129 36.000 0.00 0.00 0.00 3.99
257 258 5.413499 ACACTACACTACTGTCAAAAACGT 58.587 37.500 0.00 0.00 0.00 3.99
258 259 5.961395 ACACTACACTACTGTCAAAAACG 57.039 39.130 0.00 0.00 0.00 3.60
262 263 9.217278 TGTTTTTAACACTACACTACTGTCAAA 57.783 29.630 0.00 0.00 36.25 2.69
263 264 8.774890 TGTTTTTAACACTACACTACTGTCAA 57.225 30.769 0.00 0.00 36.25 3.18
264 265 8.951787 ATGTTTTTAACACTACACTACTGTCA 57.048 30.769 0.00 0.00 45.50 3.58
265 266 9.859692 GAATGTTTTTAACACTACACTACTGTC 57.140 33.333 0.00 0.00 45.50 3.51
266 267 9.609346 AGAATGTTTTTAACACTACACTACTGT 57.391 29.630 0.00 0.00 45.50 3.55
283 284 9.981114 CTTTGTCCCAAACTATAAGAATGTTTT 57.019 29.630 0.00 0.00 32.42 2.43
284 285 8.585018 CCTTTGTCCCAAACTATAAGAATGTTT 58.415 33.333 0.00 0.00 34.69 2.83
285 286 7.178451 CCCTTTGTCCCAAACTATAAGAATGTT 59.822 37.037 0.00 0.00 0.00 2.71
286 287 6.663523 CCCTTTGTCCCAAACTATAAGAATGT 59.336 38.462 0.00 0.00 0.00 2.71
287 288 6.889722 TCCCTTTGTCCCAAACTATAAGAATG 59.110 38.462 0.00 0.00 0.00 2.67
288 289 7.039722 TCCCTTTGTCCCAAACTATAAGAAT 57.960 36.000 0.00 0.00 0.00 2.40
289 290 6.045106 ACTCCCTTTGTCCCAAACTATAAGAA 59.955 38.462 0.00 0.00 0.00 2.52
290 291 5.550403 ACTCCCTTTGTCCCAAACTATAAGA 59.450 40.000 0.00 0.00 0.00 2.10
291 292 5.816682 ACTCCCTTTGTCCCAAACTATAAG 58.183 41.667 0.00 0.00 0.00 1.73
292 293 5.853572 ACTCCCTTTGTCCCAAACTATAA 57.146 39.130 0.00 0.00 0.00 0.98
293 294 7.519347 AATACTCCCTTTGTCCCAAACTATA 57.481 36.000 0.00 0.00 0.00 1.31
294 295 6.402981 AATACTCCCTTTGTCCCAAACTAT 57.597 37.500 0.00 0.00 0.00 2.12
295 296 5.853572 AATACTCCCTTTGTCCCAAACTA 57.146 39.130 0.00 0.00 0.00 2.24
296 297 4.741928 AATACTCCCTTTGTCCCAAACT 57.258 40.909 0.00 0.00 0.00 2.66
297 298 5.801531 AAAATACTCCCTTTGTCCCAAAC 57.198 39.130 0.00 0.00 0.00 2.93
298 299 6.140377 AGAAAAATACTCCCTTTGTCCCAAA 58.860 36.000 0.00 0.00 0.00 3.28
299 300 5.711698 AGAAAAATACTCCCTTTGTCCCAA 58.288 37.500 0.00 0.00 0.00 4.12
300 301 5.333566 AGAAAAATACTCCCTTTGTCCCA 57.666 39.130 0.00 0.00 0.00 4.37
301 302 6.665992 AAAGAAAAATACTCCCTTTGTCCC 57.334 37.500 0.00 0.00 0.00 4.46
302 303 8.857098 AGTTAAAGAAAAATACTCCCTTTGTCC 58.143 33.333 0.00 0.00 0.00 4.02
309 310 9.639601 CCAATGAAGTTAAAGAAAAATACTCCC 57.360 33.333 0.00 0.00 0.00 4.30
310 311 9.140286 GCCAATGAAGTTAAAGAAAAATACTCC 57.860 33.333 0.00 0.00 0.00 3.85
311 312 8.850452 CGCCAATGAAGTTAAAGAAAAATACTC 58.150 33.333 0.00 0.00 0.00 2.59
315 316 6.146021 CAGCGCCAATGAAGTTAAAGAAAAAT 59.854 34.615 2.29 0.00 0.00 1.82
319 320 3.611530 GCAGCGCCAATGAAGTTAAAGAA 60.612 43.478 2.29 0.00 0.00 2.52
338 339 6.585695 ATGGATTTGCTATATTCTTGGCAG 57.414 37.500 0.00 0.00 36.06 4.85
341 342 7.719483 ACACAATGGATTTGCTATATTCTTGG 58.281 34.615 0.00 0.00 39.03 3.61
403 404 6.399986 CCGCGAGAAAAGGAATTGAAAATTTC 60.400 38.462 8.23 0.00 0.00 2.17
409 410 2.500229 ACCGCGAGAAAAGGAATTGAA 58.500 42.857 8.23 0.00 0.00 2.69
427 428 6.731164 TCGTCTGGATTTTGACTTTAAAACC 58.269 36.000 0.00 0.00 32.86 3.27
433 434 6.814146 GTCTATCTCGTCTGGATTTTGACTTT 59.186 38.462 0.00 0.00 0.00 2.66
466 467 0.325203 GCCAAATTGCCCCTCCCTTA 60.325 55.000 0.00 0.00 0.00 2.69
563 565 4.168760 GCACTAAAACATCTTCCATGCAC 58.831 43.478 0.00 0.00 0.00 4.57
580 582 0.669619 TTCACGAACCTCACGCACTA 59.330 50.000 0.00 0.00 0.00 2.74
588 590 6.530181 ACAAACTGAAAATTTTCACGAACCTC 59.470 34.615 26.01 1.99 41.88 3.85
598 600 8.667463 CAGATGTCCAAACAAACTGAAAATTTT 58.333 29.630 2.28 2.28 41.82 1.82
602 604 6.152661 ACTCAGATGTCCAAACAAACTGAAAA 59.847 34.615 14.68 1.28 44.38 2.29
609 611 4.973168 AGCTACTCAGATGTCCAAACAAA 58.027 39.130 0.00 0.00 39.30 2.83
611 613 3.834813 AGAGCTACTCAGATGTCCAAACA 59.165 43.478 0.00 0.00 34.61 2.83
612 614 4.464069 AGAGCTACTCAGATGTCCAAAC 57.536 45.455 0.00 0.00 32.06 2.93
659 661 9.205513 AGGGTTGAGATAGCAAATATTCATTTT 57.794 29.630 0.00 0.00 31.82 1.82
660 662 8.773033 AGGGTTGAGATAGCAAATATTCATTT 57.227 30.769 0.00 0.00 34.60 2.32
661 663 8.773033 AAGGGTTGAGATAGCAAATATTCATT 57.227 30.769 0.00 0.00 0.00 2.57
662 664 8.773033 AAAGGGTTGAGATAGCAAATATTCAT 57.227 30.769 0.00 0.00 0.00 2.57
663 665 8.593945 AAAAGGGTTGAGATAGCAAATATTCA 57.406 30.769 0.00 0.00 0.00 2.57
672 674 9.151471 GGAAAAATTAAAAAGGGTTGAGATAGC 57.849 33.333 0.00 0.00 0.00 2.97
675 677 8.713971 ACTGGAAAAATTAAAAAGGGTTGAGAT 58.286 29.630 0.00 0.00 0.00 2.75
677 679 7.226523 CCACTGGAAAAATTAAAAAGGGTTGAG 59.773 37.037 0.00 0.00 0.00 3.02
678 680 7.051000 CCACTGGAAAAATTAAAAAGGGTTGA 58.949 34.615 0.00 0.00 0.00 3.18
679 681 7.051000 TCCACTGGAAAAATTAAAAAGGGTTG 58.949 34.615 0.00 0.00 0.00 3.77
680 682 7.201702 TCCACTGGAAAAATTAAAAAGGGTT 57.798 32.000 0.00 0.00 0.00 4.11
683 685 9.942850 ACATATCCACTGGAAAAATTAAAAAGG 57.057 29.630 0.66 0.00 34.34 3.11
690 692 8.664669 AAAGGTACATATCCACTGGAAAAATT 57.335 30.769 0.66 0.00 34.34 1.82
691 693 7.342026 GGAAAGGTACATATCCACTGGAAAAAT 59.658 37.037 0.66 0.00 34.34 1.82
692 694 6.661805 GGAAAGGTACATATCCACTGGAAAAA 59.338 38.462 0.66 0.00 34.34 1.94
693 695 6.184789 GGAAAGGTACATATCCACTGGAAAA 58.815 40.000 0.66 0.00 34.34 2.29
695 697 4.785914 TGGAAAGGTACATATCCACTGGAA 59.214 41.667 0.66 0.00 37.05 3.53
696 698 4.367166 TGGAAAGGTACATATCCACTGGA 58.633 43.478 0.00 0.00 37.05 3.86
697 699 4.164221 ACTGGAAAGGTACATATCCACTGG 59.836 45.833 8.25 0.00 37.05 4.00
698 700 5.359194 ACTGGAAAGGTACATATCCACTG 57.641 43.478 8.25 4.11 37.05 3.66
699 701 6.203072 AGTACTGGAAAGGTACATATCCACT 58.797 40.000 8.25 3.39 41.16 4.00
700 702 6.481434 AGTACTGGAAAGGTACATATCCAC 57.519 41.667 8.25 1.54 41.16 4.02
702 704 8.867097 TGAATAGTACTGGAAAGGTACATATCC 58.133 37.037 5.39 0.00 41.16 2.59
710 712 7.499232 GCACATTATGAATAGTACTGGAAAGGT 59.501 37.037 5.39 0.00 0.00 3.50
711 713 7.498900 TGCACATTATGAATAGTACTGGAAAGG 59.501 37.037 5.39 0.00 0.00 3.11
712 714 8.437360 TGCACATTATGAATAGTACTGGAAAG 57.563 34.615 5.39 0.00 0.00 2.62
713 715 8.264347 TCTGCACATTATGAATAGTACTGGAAA 58.736 33.333 5.39 0.00 0.00 3.13
714 716 7.791029 TCTGCACATTATGAATAGTACTGGAA 58.209 34.615 5.39 0.00 0.00 3.53
715 717 7.360113 TCTGCACATTATGAATAGTACTGGA 57.640 36.000 5.39 0.00 0.00 3.86
716 718 7.874528 TCATCTGCACATTATGAATAGTACTGG 59.125 37.037 5.39 0.00 0.00 4.00
718 720 8.093307 CCTCATCTGCACATTATGAATAGTACT 58.907 37.037 0.00 0.00 0.00 2.73
719 721 7.875041 ACCTCATCTGCACATTATGAATAGTAC 59.125 37.037 0.00 0.00 0.00 2.73
731 853 1.524002 CCCGACCTCATCTGCACAT 59.476 57.895 0.00 0.00 0.00 3.21
732 854 2.981302 CCCGACCTCATCTGCACA 59.019 61.111 0.00 0.00 0.00 4.57
861 1119 1.768275 ACAGAATGCACGATGGGGATA 59.232 47.619 0.00 0.00 42.53 2.59
908 1166 2.683859 GGCGACGTTTTGTAGGCCC 61.684 63.158 0.00 0.00 41.91 5.80
950 1209 0.389426 GTTGTCCTGTCGTGCGGTAT 60.389 55.000 0.00 0.00 0.00 2.73
952 1211 2.279918 GTTGTCCTGTCGTGCGGT 60.280 61.111 0.00 0.00 0.00 5.68
1195 1455 1.453197 GAGTGGTATTTGGCGGGGG 60.453 63.158 0.00 0.00 0.00 5.40
1212 1472 0.856982 GGGATCAGAGAGAGGAGGGA 59.143 60.000 0.00 0.00 0.00 4.20
1217 1478 2.170187 CCAAACAGGGATCAGAGAGAGG 59.830 54.545 0.00 0.00 0.00 3.69
1303 1946 3.450904 TCAGTAGATACCTTGCCCAACT 58.549 45.455 0.00 0.00 0.00 3.16
1310 1953 3.520290 TGCGGTTCAGTAGATACCTTG 57.480 47.619 0.00 0.00 0.00 3.61
1342 1985 7.024340 TCGAGCAATTACTACTAACTAGTGG 57.976 40.000 0.00 0.00 40.22 4.00
1343 1986 7.133513 CCTCGAGCAATTACTACTAACTAGTG 58.866 42.308 6.99 0.00 36.29 2.74
1344 1987 6.238703 GCCTCGAGCAATTACTACTAACTAGT 60.239 42.308 6.99 0.00 42.97 2.57
1345 1988 6.144175 GCCTCGAGCAATTACTACTAACTAG 58.856 44.000 6.99 0.00 42.97 2.57
1388 2036 5.104259 AGGGCTACAATTCTCCAAAGTAG 57.896 43.478 0.00 0.00 36.22 2.57
1404 2052 3.698040 CGTCTACAAAGTAGGAAGGGCTA 59.302 47.826 4.52 0.00 0.00 3.93
1412 2060 5.821516 ATCTCAGACGTCTACAAAGTAGG 57.178 43.478 19.57 2.33 0.00 3.18
1459 2119 1.291272 GGTACTCGGGTGTGGTGTC 59.709 63.158 0.00 0.00 0.00 3.67
1460 2120 2.212110 GGGTACTCGGGTGTGGTGT 61.212 63.158 0.00 0.00 0.00 4.16
1461 2121 1.760479 TTGGGTACTCGGGTGTGGTG 61.760 60.000 0.00 0.00 0.00 4.17
1462 2122 1.459921 TTGGGTACTCGGGTGTGGT 60.460 57.895 0.00 0.00 0.00 4.16
1463 2123 1.004200 GTTGGGTACTCGGGTGTGG 60.004 63.158 0.00 0.00 0.00 4.17
1475 2135 3.257624 CGAACTAGTTGAGGTAGTTGGGT 59.742 47.826 14.14 0.00 40.16 4.51
1484 2144 5.479306 TCTCAAATTCCGAACTAGTTGAGG 58.521 41.667 14.14 15.73 41.36 3.86
1493 2153 8.125448 CCAAATTCTATCTCTCAAATTCCGAAC 58.875 37.037 0.00 0.00 0.00 3.95
1497 2157 7.579761 AGCCAAATTCTATCTCTCAAATTCC 57.420 36.000 0.00 0.00 0.00 3.01
1572 2233 4.803098 ACATCGAAACCTAGCTTGTAGT 57.197 40.909 0.00 0.00 0.00 2.73
1573 2234 5.408604 ACAAACATCGAAACCTAGCTTGTAG 59.591 40.000 0.00 0.00 0.00 2.74
1574 2235 5.302360 ACAAACATCGAAACCTAGCTTGTA 58.698 37.500 0.00 0.00 0.00 2.41
1726 2388 7.070198 TGACCATCAATTTATTGCATGGAGAAT 59.930 33.333 24.61 12.73 42.05 2.40
1727 2389 6.380560 TGACCATCAATTTATTGCATGGAGAA 59.619 34.615 24.61 14.62 42.05 2.87
1728 2390 5.892686 TGACCATCAATTTATTGCATGGAGA 59.107 36.000 24.61 15.15 42.05 3.71
1729 2391 5.981315 GTGACCATCAATTTATTGCATGGAG 59.019 40.000 24.61 11.30 42.05 3.86
1735 2397 6.308766 GTGAGTTGTGACCATCAATTTATTGC 59.691 38.462 0.00 0.00 37.68 3.56
1743 2405 3.118445 TCACTGTGAGTTGTGACCATCAA 60.118 43.478 6.36 0.00 38.15 2.57
1773 2435 4.580995 TGTCTGGGTTTTTGCTTATTTCGA 59.419 37.500 0.00 0.00 0.00 3.71
1783 2445 7.433680 AGCTACTTATTTTGTCTGGGTTTTTG 58.566 34.615 0.00 0.00 0.00 2.44
1787 2449 5.880887 GCTAGCTACTTATTTTGTCTGGGTT 59.119 40.000 7.70 0.00 0.00 4.11
1788 2450 5.045869 TGCTAGCTACTTATTTTGTCTGGGT 60.046 40.000 17.23 0.00 0.00 4.51
1791 2453 7.806690 TGTTTGCTAGCTACTTATTTTGTCTG 58.193 34.615 17.23 0.00 0.00 3.51
1792 2454 7.361286 GCTGTTTGCTAGCTACTTATTTTGTCT 60.361 37.037 17.23 0.00 38.14 3.41
1793 2455 6.743172 GCTGTTTGCTAGCTACTTATTTTGTC 59.257 38.462 17.23 0.00 38.14 3.18
1794 2456 6.206634 TGCTGTTTGCTAGCTACTTATTTTGT 59.793 34.615 17.23 0.00 41.66 2.83
1795 2457 6.524586 GTGCTGTTTGCTAGCTACTTATTTTG 59.475 38.462 17.23 0.00 41.66 2.44
1840 2502 8.301002 GCTTTTGGTGGTTCTAAACATGTAATA 58.699 33.333 0.00 0.00 0.00 0.98
1861 2523 1.999648 TGCCATGTTCTCCAGCTTTT 58.000 45.000 0.00 0.00 0.00 2.27
1873 2535 3.377253 AGTGGAATCATCTTGCCATGT 57.623 42.857 0.00 0.00 32.26 3.21
1907 2569 1.676635 GCCCCCTAACCACCGAAAC 60.677 63.158 0.00 0.00 0.00 2.78
1935 2602 0.887836 CTGGGGATGGCGATGATGTG 60.888 60.000 0.00 0.00 0.00 3.21
1942 2609 0.398522 ACAGATACTGGGGATGGCGA 60.399 55.000 0.00 0.00 35.51 5.54
1970 2637 7.275920 TGCTAAATTCCAGTTCTAAGATCTCC 58.724 38.462 0.00 0.00 0.00 3.71
2068 2735 0.251742 TGGCAAAGCATTAGTGGGCT 60.252 50.000 0.00 0.00 43.46 5.19
2071 2738 4.824289 AGAAAATGGCAAAGCATTAGTGG 58.176 39.130 0.00 0.00 0.00 4.00
2141 2808 1.401905 GCCAAAGTGCGAGAATTAGGG 59.598 52.381 0.00 0.00 0.00 3.53
2427 3094 7.281324 TGGATGTATGTTGTTATTACCTTTCCG 59.719 37.037 0.00 0.00 0.00 4.30
2545 3215 9.297037 ACAACAAGCCTAGTACTAAATTTGAAT 57.703 29.630 19.01 9.81 0.00 2.57
2606 3276 1.092348 GGACCCAGGATTGTAAACGC 58.908 55.000 0.00 0.00 0.00 4.84
2615 3285 3.775316 CTGTACAACTTAGGACCCAGGAT 59.225 47.826 0.00 0.00 0.00 3.24
2619 3289 4.744237 AGTACTGTACAACTTAGGACCCA 58.256 43.478 19.27 0.00 0.00 4.51
2629 3299 8.223177 AGTGTCTATGGATAGTACTGTACAAC 57.777 38.462 19.27 3.60 32.22 3.32
2632 3302 8.680039 AGAAGTGTCTATGGATAGTACTGTAC 57.320 38.462 9.93 9.93 33.04 2.90
2633 3303 9.696572 AAAGAAGTGTCTATGGATAGTACTGTA 57.303 33.333 5.39 0.00 33.04 2.74
2634 3304 8.470805 CAAAGAAGTGTCTATGGATAGTACTGT 58.529 37.037 5.39 0.00 33.04 3.55
2635 3305 8.470805 ACAAAGAAGTGTCTATGGATAGTACTG 58.529 37.037 5.39 0.00 33.04 2.74
2636 3306 8.596781 ACAAAGAAGTGTCTATGGATAGTACT 57.403 34.615 0.00 0.00 33.61 2.73
2637 3307 9.088512 CAACAAAGAAGTGTCTATGGATAGTAC 57.911 37.037 0.00 0.00 32.16 2.73
2639 3309 6.595716 GCAACAAAGAAGTGTCTATGGATAGT 59.404 38.462 0.00 0.00 32.16 2.12
2640 3310 6.037610 GGCAACAAAGAAGTGTCTATGGATAG 59.962 42.308 0.00 0.00 32.16 2.08
2667 3343 6.485830 AGCATTAGAATCACTAACTGGCTA 57.514 37.500 0.00 0.00 42.79 3.93
2668 3344 5.365021 AGCATTAGAATCACTAACTGGCT 57.635 39.130 0.00 0.00 42.79 4.75
2766 3442 3.660501 AGTTGTCACTACGATGCTTCA 57.339 42.857 0.08 0.00 0.00 3.02
2908 3584 7.670364 TGATGAACTTGTCTCTGTTTCTCATA 58.330 34.615 0.00 0.00 0.00 2.15
2917 3593 5.873164 TCACATCATGATGAACTTGTCTCTG 59.127 40.000 36.37 21.50 41.20 3.35
2919 3595 6.104665 TCTCACATCATGATGAACTTGTCTC 58.895 40.000 36.37 0.00 41.20 3.36
2960 3639 2.761208 AGAAAGGTGTACATCTCCTCCG 59.239 50.000 9.59 0.00 38.87 4.63
2961 3640 7.598759 TTATAGAAAGGTGTACATCTCCTCC 57.401 40.000 9.59 0.00 38.87 4.30
2982 3661 6.376248 ACATGTGCATTTTAGGAGGGATTAT 58.624 36.000 0.00 0.00 0.00 1.28
3015 3694 2.301870 TGGTCTCCACAACATACAGTCC 59.698 50.000 0.00 0.00 0.00 3.85
3028 3707 5.428457 ACATCATAGTGGTATTTGGTCTCCA 59.572 40.000 0.00 0.00 0.00 3.86
3037 3716 7.886629 AAGAATTGCACATCATAGTGGTATT 57.113 32.000 0.00 0.00 39.87 1.89
3077 3756 4.621460 CAGTACATGTTACTTCAGGTCGTG 59.379 45.833 2.30 0.00 34.27 4.35
3078 3757 4.280174 ACAGTACATGTTACTTCAGGTCGT 59.720 41.667 2.30 0.00 39.96 4.34
3172 3851 4.344237 CCCTCCATTTCAGGGTGC 57.656 61.111 0.00 0.00 45.35 5.01
3264 3943 5.279206 CCAACCTGCCAAACAACAATACATA 60.279 40.000 0.00 0.00 0.00 2.29
3413 4092 6.972328 TGAAACTCAGATTTGAAAGGTTTTCG 59.028 34.615 4.32 0.00 32.55 3.46
3414 4093 7.222805 GGTGAAACTCAGATTTGAAAGGTTTTC 59.777 37.037 4.32 0.00 32.55 2.29
3415 4094 7.041721 GGTGAAACTCAGATTTGAAAGGTTTT 58.958 34.615 4.32 0.00 32.55 2.43
3541 4224 1.160137 GCACTCACAAGGACATCACC 58.840 55.000 0.00 0.00 0.00 4.02
3654 4338 8.731605 TCGACAAAGGCAATATTATGTGTTTAA 58.268 29.630 0.00 0.00 0.00 1.52
3714 4398 2.013563 GCAAGAGGCGATCATGGACAA 61.014 52.381 0.00 0.00 0.00 3.18
3719 4403 0.745486 TGTGGCAAGAGGCGATCATG 60.745 55.000 0.00 0.00 46.16 3.07
3798 4512 1.084289 AAGAATTCCTACCGCAACGC 58.916 50.000 0.65 0.00 0.00 4.84
3804 4518 3.203716 GGCACCTTAAGAATTCCTACCG 58.796 50.000 3.36 0.00 0.00 4.02
3805 4519 4.230745 TGGCACCTTAAGAATTCCTACC 57.769 45.455 3.36 0.00 0.00 3.18
3885 4604 5.399858 ACTACGGAGTATATTGCGCAATAG 58.600 41.667 37.29 27.40 44.56 1.73
3890 4609 7.025963 ACTATTTACTACGGAGTATATTGCGC 58.974 38.462 14.87 0.00 44.56 6.09
3953 4679 7.159372 GGACTTTATTACCTCACTGAAACTCA 58.841 38.462 0.00 0.00 0.00 3.41
3961 4687 6.893020 AGAATGGGACTTTATTACCTCACT 57.107 37.500 0.00 0.00 0.00 3.41
3972 4698 4.038271 TCATCAGCAAGAATGGGACTTT 57.962 40.909 0.00 0.00 0.00 2.66
4128 4858 5.881443 AGTAGTAGTACAACTCAGCTCGAAT 59.119 40.000 10.33 0.00 0.00 3.34
4213 5032 4.801516 GGTTTTGTTCACGCAATAAACAGT 59.198 37.500 0.00 0.00 34.64 3.55
4225 5044 7.257722 TCAGAGAAAAATCTGGTTTTGTTCAC 58.742 34.615 0.00 0.00 45.60 3.18
4226 5045 7.403312 TCAGAGAAAAATCTGGTTTTGTTCA 57.597 32.000 0.00 0.00 45.60 3.18
4231 5050 7.308589 CCGTACATCAGAGAAAAATCTGGTTTT 60.309 37.037 4.05 0.00 45.60 2.43
4250 5069 0.250727 ACAAGTTGCAGGCCGTACAT 60.251 50.000 1.81 0.00 0.00 2.29
4306 5147 1.130749 CTGAGTTCGAGTCCGATTCGT 59.869 52.381 12.40 0.00 45.10 3.85
4341 5182 4.979197 TGTGCAACGTAATTCACATTTTCC 59.021 37.500 7.65 0.00 42.39 3.13
4392 5247 0.385390 CCTTGCTGACCAAACACACC 59.615 55.000 0.00 0.00 31.94 4.16
4410 5265 3.142838 ATGTTGCCGCCTGATGCC 61.143 61.111 0.00 0.00 36.24 4.40
4517 5484 7.813627 GGTGCCTATCTTAGCTTGTATTAGTAC 59.186 40.741 0.00 0.00 0.00 2.73
4519 5486 6.326583 TGGTGCCTATCTTAGCTTGTATTAGT 59.673 38.462 0.00 0.00 0.00 2.24
4520 5487 6.759272 TGGTGCCTATCTTAGCTTGTATTAG 58.241 40.000 0.00 0.00 0.00 1.73
4521 5488 6.740944 TGGTGCCTATCTTAGCTTGTATTA 57.259 37.500 0.00 0.00 0.00 0.98
4522 5489 5.630415 TGGTGCCTATCTTAGCTTGTATT 57.370 39.130 0.00 0.00 0.00 1.89
4523 5490 5.630415 TTGGTGCCTATCTTAGCTTGTAT 57.370 39.130 0.00 0.00 0.00 2.29
4524 5491 5.130311 TCATTGGTGCCTATCTTAGCTTGTA 59.870 40.000 0.00 0.00 0.00 2.41
4525 5492 4.080356 TCATTGGTGCCTATCTTAGCTTGT 60.080 41.667 0.00 0.00 0.00 3.16
4526 5493 4.274459 GTCATTGGTGCCTATCTTAGCTTG 59.726 45.833 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.