Multiple sequence alignment - TraesCS7B01G100600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G100600 chr7B 100.000 3880 0 0 1 3880 115236068 115239947 0.000000e+00 7166.0
1 TraesCS7B01G100600 chr7B 81.481 108 19 1 497 604 524922290 524922184 1.920000e-13 87.9
2 TraesCS7B01G100600 chr7A 93.472 2160 80 26 928 3042 154384238 154386381 0.000000e+00 3151.0
3 TraesCS7B01G100600 chr7A 87.500 928 101 9 3 922 154382979 154383899 0.000000e+00 1057.0
4 TraesCS7B01G100600 chr7A 89.234 483 26 7 3406 3880 154386975 154387439 7.230000e-162 580.0
5 TraesCS7B01G100600 chr7A 81.931 404 36 10 3040 3406 154386484 154386887 1.350000e-79 307.0
6 TraesCS7B01G100600 chr7D 96.485 1764 48 5 984 2745 153296331 153298082 0.000000e+00 2902.0
7 TraesCS7B01G100600 chr7D 89.552 938 68 15 1 932 153295412 153296325 0.000000e+00 1162.0
8 TraesCS7B01G100600 chr7D 84.919 1240 78 49 2718 3880 153298110 153299317 0.000000e+00 1153.0
9 TraesCS7B01G100600 chr3D 81.646 158 25 3 1 158 348146484 348146637 1.130000e-25 128.0
10 TraesCS7B01G100600 chr3A 81.250 160 23 5 1 158 467094092 467094246 5.260000e-24 122.0
11 TraesCS7B01G100600 chr2D 73.118 279 47 17 359 627 308479605 308479865 1.500000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G100600 chr7B 115236068 115239947 3879 False 7166.00 7166 100.000000 1 3880 1 chr7B.!!$F1 3879
1 TraesCS7B01G100600 chr7A 154382979 154387439 4460 False 1273.75 3151 88.034250 3 3880 4 chr7A.!!$F1 3877
2 TraesCS7B01G100600 chr7D 153295412 153299317 3905 False 1739.00 2902 90.318667 1 3880 3 chr7D.!!$F1 3879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 626 0.398696 TTGTTAGGCATGGTGTCCGT 59.601 50.000 0.0 0.0 0.00 4.69 F
726 732 0.890542 GTCTGTGTGGAGCAATGGCA 60.891 55.000 0.0 0.0 44.61 4.92 F
1219 1564 1.154263 GTCTTCGTCACCGTCCTCG 60.154 63.158 0.0 0.0 35.01 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2399 0.037882 CTCGAGAACAGCTCCAGCAA 60.038 55.0 6.58 0.0 45.16 3.91 R
2260 2605 0.257039 GGTTGGCCAGGATCATCACT 59.743 55.0 5.11 0.0 34.09 3.41 R
3210 3775 0.031043 CTCAGCTGGATCTCTGAGCG 59.969 60.0 15.13 8.5 46.45 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 3.119101 TGCCCTCTCGACATTCTTTCTAC 60.119 47.826 0.00 0.00 0.00 2.59
105 106 8.553459 TTCTTTCTACATCCTTCTTGTCATTC 57.447 34.615 0.00 0.00 0.00 2.67
163 164 0.601057 TGGTCTTGACGAAGATCGCA 59.399 50.000 0.00 0.00 45.12 5.10
164 165 1.000394 TGGTCTTGACGAAGATCGCAA 60.000 47.619 0.00 4.89 45.12 4.85
344 345 6.017400 ACAAAGTAGTTTTCCATCAGCATG 57.983 37.500 0.00 0.00 37.54 4.06
345 346 4.708726 AAGTAGTTTTCCATCAGCATGC 57.291 40.909 10.51 10.51 34.76 4.06
346 347 3.019564 AGTAGTTTTCCATCAGCATGCC 58.980 45.455 15.66 0.00 34.76 4.40
347 348 1.188863 AGTTTTCCATCAGCATGCCC 58.811 50.000 15.66 0.00 34.76 5.36
349 350 2.025037 AGTTTTCCATCAGCATGCCCTA 60.025 45.455 15.66 0.00 34.76 3.53
350 351 2.353357 TTTCCATCAGCATGCCCTAG 57.647 50.000 15.66 2.11 34.76 3.02
357 363 1.065926 TCAGCATGCCCTAGTGTCTTG 60.066 52.381 15.66 1.63 34.76 3.02
385 391 6.039047 CAGATTCAACACTTGATATCCCTTGG 59.961 42.308 0.00 0.00 39.84 3.61
402 408 4.508405 CCCTTGGTTGATCCCTTGAAACTA 60.508 45.833 0.00 0.00 34.77 2.24
480 486 4.505313 TTCATCCTCATAATCGTCCTCG 57.495 45.455 0.00 0.00 38.55 4.63
547 553 2.900122 CGAATCCATCGTGTTTGCTT 57.100 45.000 0.00 0.00 46.52 3.91
606 612 3.472652 ACATTTGACCGAGCACTTGTTA 58.527 40.909 0.00 0.00 0.00 2.41
620 626 0.398696 TTGTTAGGCATGGTGTCCGT 59.601 50.000 0.00 0.00 0.00 4.69
625 631 2.114670 GGCATGGTGTCCGTCATGG 61.115 63.158 0.00 0.00 40.59 3.66
633 639 2.366837 TCCGTCATGGAGGGGCAT 60.367 61.111 5.25 0.00 43.74 4.40
634 640 2.111878 CCGTCATGGAGGGGCATC 59.888 66.667 0.00 0.00 42.00 3.91
635 641 2.446848 CCGTCATGGAGGGGCATCT 61.447 63.158 0.00 0.00 42.00 2.90
636 642 1.227764 CGTCATGGAGGGGCATCTG 60.228 63.158 0.00 0.00 0.00 2.90
637 643 1.918253 GTCATGGAGGGGCATCTGT 59.082 57.895 0.00 0.00 0.00 3.41
638 644 1.131638 GTCATGGAGGGGCATCTGTA 58.868 55.000 0.00 0.00 0.00 2.74
649 655 2.042762 ATCTGTAGGGGGCAGGCA 59.957 61.111 0.00 0.00 34.89 4.75
720 726 4.314440 GGGCGTCTGTGTGGAGCA 62.314 66.667 0.00 0.00 0.00 4.26
721 727 2.280797 GGCGTCTGTGTGGAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
726 732 0.890542 GTCTGTGTGGAGCAATGGCA 60.891 55.000 0.00 0.00 44.61 4.92
744 750 2.597510 GTCCGGCAAAGCTTGGGT 60.598 61.111 0.00 0.00 0.00 4.51
748 754 3.233231 GGCAAAGCTTGGGTGGCA 61.233 61.111 16.00 0.00 37.73 4.92
750 756 1.372307 GCAAAGCTTGGGTGGCAAT 59.628 52.632 0.00 0.00 0.00 3.56
795 801 1.305046 GGGAGGAGGAAGACGGTCA 60.305 63.158 11.27 0.00 0.00 4.02
835 841 6.473455 GCACTTGGATGTCACATTTTTATAGC 59.527 38.462 0.00 0.00 0.00 2.97
848 854 9.090692 CACATTTTTATAGCTTCCAAGGAATTG 57.909 33.333 1.35 0.00 33.28 2.32
922 932 8.099364 TCTAGTGAATGTTTTGGATTTCTGTC 57.901 34.615 0.00 0.00 0.00 3.51
932 1275 4.137116 TGGATTTCTGTCGGAAGGTATG 57.863 45.455 0.00 0.00 35.16 2.39
940 1283 3.818773 CTGTCGGAAGGTATGTTTTGGTT 59.181 43.478 0.00 0.00 0.00 3.67
951 1294 5.694458 GGTATGTTTTGGTTGGTTGAATGTC 59.306 40.000 0.00 0.00 0.00 3.06
1028 1371 2.932855 TCACCGGTCAACACCAATAA 57.067 45.000 2.59 0.00 44.02 1.40
1031 1374 1.202675 ACCGGTCAACACCAATAACGT 60.203 47.619 0.00 0.00 44.02 3.99
1122 1467 2.544267 GTCTGGTCGTCACAAGGAAAAG 59.456 50.000 0.00 0.00 0.00 2.27
1210 1555 2.670592 TCCTCCGCGTCTTCGTCA 60.671 61.111 4.92 0.00 39.49 4.35
1219 1564 1.154263 GTCTTCGTCACCGTCCTCG 60.154 63.158 0.00 0.00 35.01 4.63
1300 1645 4.867599 GCCGACCCCGTCATCGTC 62.868 72.222 0.00 0.00 36.60 4.20
1303 1648 3.072468 GACCCCGTCATCGTCCCA 61.072 66.667 0.00 0.00 35.01 4.37
1324 1669 4.148825 GGCCAGACCATCGAGCGT 62.149 66.667 0.00 0.00 38.86 5.07
1623 1968 4.456253 CGTCGACTACAGCGCCGT 62.456 66.667 14.70 1.13 0.00 5.68
1624 1969 2.126580 GTCGACTACAGCGCCGTT 60.127 61.111 8.70 0.00 0.00 4.44
2275 2620 1.890979 CGCAGTGATGATCCTGGCC 60.891 63.158 0.00 0.00 0.00 5.36
2738 3083 4.200283 CGCTCTCCCCACGCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
2740 3085 3.522731 CTCTCCCCACGCTCTCCG 61.523 72.222 0.00 0.00 44.21 4.63
2745 3090 3.764466 CCCACGCTCTCCGCTCTT 61.764 66.667 0.00 0.00 41.76 2.85
2808 3218 1.468054 GGAACAACTGCATTCGCCATC 60.468 52.381 0.00 0.00 37.32 3.51
2863 3300 5.126396 TCTATGTAGGCGTTGATGATCTG 57.874 43.478 0.00 0.00 0.00 2.90
2864 3301 3.827008 ATGTAGGCGTTGATGATCTGT 57.173 42.857 0.00 0.00 0.00 3.41
2865 3302 2.892374 TGTAGGCGTTGATGATCTGTG 58.108 47.619 0.00 0.00 0.00 3.66
2866 3303 2.495669 TGTAGGCGTTGATGATCTGTGA 59.504 45.455 0.00 0.00 0.00 3.58
2917 3359 8.103305 ACTAGTATGGAACTGTCAATTTGTCAT 58.897 33.333 0.00 0.00 39.39 3.06
2920 3362 5.957842 TGGAACTGTCAATTTGTCATACC 57.042 39.130 0.00 2.67 0.00 2.73
2933 3375 0.766131 TCATACCGTGGTGTGGGTTT 59.234 50.000 14.72 0.00 37.73 3.27
3025 3469 4.274459 GTCATTGGTGCCTATCTTAGCTTG 59.726 45.833 0.00 0.00 0.00 4.01
3141 3692 3.142838 ATGTTGCCGCCTGATGCC 61.143 61.111 0.00 0.00 36.24 4.40
3159 3710 0.385390 CCTTGCTGACCAAACACACC 59.615 55.000 0.00 0.00 31.94 4.16
3210 3775 4.979197 TGTGCAACGTAATTCACATTTTCC 59.021 37.500 7.65 0.00 42.39 3.13
3245 3810 1.130749 CTGAGTTCGAGTCCGATTCGT 59.869 52.381 12.40 0.00 45.10 3.85
3301 3888 0.250727 ACAAGTTGCAGGCCGTACAT 60.251 50.000 1.81 0.00 0.00 2.29
3320 3907 7.308589 CCGTACATCAGAGAAAAATCTGGTTTT 60.309 37.037 4.05 0.00 45.60 2.43
3325 3912 7.403312 TCAGAGAAAAATCTGGTTTTGTTCA 57.597 32.000 0.00 0.00 45.60 3.18
3326 3913 7.257722 TCAGAGAAAAATCTGGTTTTGTTCAC 58.742 34.615 0.00 0.00 45.60 3.18
3338 3925 4.801516 GGTTTTGTTCACGCAATAAACAGT 59.198 37.500 0.00 0.00 34.64 3.55
3423 4099 5.881443 AGTAGTAGTACAACTCAGCTCGAAT 59.119 40.000 10.33 0.00 0.00 3.34
3579 4259 4.038271 TCATCAGCAAGAATGGGACTTT 57.962 40.909 0.00 0.00 0.00 2.66
3590 4270 6.893020 AGAATGGGACTTTATTACCTCACT 57.107 37.500 0.00 0.00 0.00 3.41
3598 4278 7.159372 GGACTTTATTACCTCACTGAAACTCA 58.841 38.462 0.00 0.00 0.00 3.41
3661 4348 7.025963 ACTATTTACTACGGAGTATATTGCGC 58.974 38.462 14.87 0.00 44.56 6.09
3666 4353 5.399858 ACTACGGAGTATATTGCGCAATAG 58.600 41.667 37.29 27.40 44.56 1.73
3746 4438 4.230745 TGGCACCTTAAGAATTCCTACC 57.769 45.455 3.36 0.00 0.00 3.18
3747 4439 3.203716 GGCACCTTAAGAATTCCTACCG 58.796 50.000 3.36 0.00 0.00 4.02
3753 4445 1.084289 AAGAATTCCTACCGCAACGC 58.916 50.000 0.65 0.00 0.00 4.84
3832 4554 0.745486 TGTGGCAAGAGGCGATCATG 60.745 55.000 0.00 0.00 46.16 3.07
3837 4559 2.013563 GCAAGAGGCGATCATGGACAA 61.014 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 2.358957 TGCCGAATGACAAGAAGGATG 58.641 47.619 0.00 0.00 0.00 3.51
163 164 7.500559 GGATTCTCTAGTTACCAGAATTGCATT 59.499 37.037 5.39 0.00 37.07 3.56
164 165 6.995091 GGATTCTCTAGTTACCAGAATTGCAT 59.005 38.462 5.39 0.00 37.07 3.96
234 235 2.422597 CTCTACAATGTTGTTCGGGCA 58.577 47.619 3.45 0.00 42.35 5.36
331 332 1.565759 ACTAGGGCATGCTGATGGAAA 59.434 47.619 18.92 0.00 0.00 3.13
344 345 3.618690 ATCTGAACAAGACACTAGGGC 57.381 47.619 0.00 0.00 37.88 5.19
345 346 5.152623 TGAATCTGAACAAGACACTAGGG 57.847 43.478 0.00 0.00 37.88 3.53
346 347 5.991606 TGTTGAATCTGAACAAGACACTAGG 59.008 40.000 0.00 0.00 37.88 3.02
347 348 6.703607 AGTGTTGAATCTGAACAAGACACTAG 59.296 38.462 20.69 0.00 40.87 2.57
349 350 5.431765 AGTGTTGAATCTGAACAAGACACT 58.568 37.500 20.69 17.43 40.87 3.55
350 351 5.741388 AGTGTTGAATCTGAACAAGACAC 57.259 39.130 20.69 16.17 40.87 3.67
357 363 6.825721 AGGGATATCAAGTGTTGAATCTGAAC 59.174 38.462 4.83 0.00 43.95 3.18
385 391 6.877611 TGTTCTTAGTTTCAAGGGATCAAC 57.122 37.500 0.00 0.00 0.00 3.18
480 486 3.441572 CCATGGATTTGTCCTCAACAGAC 59.558 47.826 5.56 0.00 39.58 3.51
506 512 3.321111 GGACACAGAGTTCTTCTACACCA 59.679 47.826 0.00 0.00 33.83 4.17
606 612 1.078214 CATGACGGACACCATGCCT 60.078 57.895 0.00 0.00 34.52 4.75
620 626 1.427809 CTACAGATGCCCCTCCATGA 58.572 55.000 0.00 0.00 0.00 3.07
625 631 2.150051 CCCCCTACAGATGCCCCTC 61.150 68.421 0.00 0.00 0.00 4.30
630 636 2.512896 CCTGCCCCCTACAGATGC 59.487 66.667 0.00 0.00 37.32 3.91
631 637 2.335092 CTGCCTGCCCCCTACAGATG 62.335 65.000 0.00 0.00 37.32 2.90
632 638 2.042762 TGCCTGCCCCCTACAGAT 59.957 61.111 0.00 0.00 37.32 2.90
633 639 2.176202 TACTGCCTGCCCCCTACAGA 62.176 60.000 0.00 0.00 37.32 3.41
634 640 1.689233 TACTGCCTGCCCCCTACAG 60.689 63.158 0.00 0.00 34.82 2.74
635 641 1.993391 GTACTGCCTGCCCCCTACA 60.993 63.158 0.00 0.00 0.00 2.74
636 642 2.743179 GGTACTGCCTGCCCCCTAC 61.743 68.421 0.00 0.00 0.00 3.18
637 643 2.366435 GGTACTGCCTGCCCCCTA 60.366 66.667 0.00 0.00 0.00 3.53
649 655 0.396811 GTCTGGCCAACACAGGTACT 59.603 55.000 7.01 0.00 43.88 2.73
698 704 2.815211 CACACAGACGCCCATCCG 60.815 66.667 0.00 0.00 0.00 4.18
701 707 2.665000 CTCCACACAGACGCCCAT 59.335 61.111 0.00 0.00 0.00 4.00
720 726 2.639327 GCTTTGCCGGACTGCCATT 61.639 57.895 5.05 0.00 0.00 3.16
721 727 3.064324 GCTTTGCCGGACTGCCAT 61.064 61.111 5.05 0.00 0.00 4.40
726 732 2.282462 CCCAAGCTTTGCCGGACT 60.282 61.111 5.05 0.00 0.00 3.85
744 750 1.303236 CGTCCAACCCAGATTGCCA 60.303 57.895 0.00 0.00 0.00 4.92
748 754 0.394352 GATGGCGTCCAACCCAGATT 60.394 55.000 2.68 0.00 36.95 2.40
750 756 2.668632 GATGGCGTCCAACCCAGA 59.331 61.111 2.68 0.00 36.95 3.86
772 778 2.044252 TCTTCCTCCTCCCGGACG 60.044 66.667 0.73 0.00 34.92 4.79
784 790 0.535797 CCTAGGGTTGACCGTCTTCC 59.464 60.000 0.00 2.46 46.96 3.46
795 801 2.124996 TGCCTGCCTCCTAGGGTT 59.875 61.111 9.46 0.00 35.37 4.11
887 893 7.062605 CCAAAACATTCACTAGAATTCATGCAC 59.937 37.037 8.44 0.00 42.46 4.57
889 895 7.315142 TCCAAAACATTCACTAGAATTCATGC 58.685 34.615 8.44 0.00 42.46 4.06
890 896 9.865321 AATCCAAAACATTCACTAGAATTCATG 57.135 29.630 8.44 4.06 42.46 3.07
892 898 9.912634 GAAATCCAAAACATTCACTAGAATTCA 57.087 29.630 8.44 0.00 42.46 2.57
895 901 9.082313 ACAGAAATCCAAAACATTCACTAGAAT 57.918 29.630 0.00 0.00 45.16 2.40
896 902 8.463930 ACAGAAATCCAAAACATTCACTAGAA 57.536 30.769 0.00 0.00 38.31 2.10
922 932 2.888414 ACCAACCAAAACATACCTTCCG 59.112 45.455 0.00 0.00 0.00 4.30
932 1275 5.983118 CCTAAGACATTCAACCAACCAAAAC 59.017 40.000 0.00 0.00 0.00 2.43
940 1283 3.420893 CAAGGCCTAAGACATTCAACCA 58.579 45.455 5.16 0.00 0.00 3.67
1019 1362 1.203994 CCGGAGAGACGTTATTGGTGT 59.796 52.381 0.00 0.00 0.00 4.16
1028 1371 0.394080 CCCTTCTACCGGAGAGACGT 60.394 60.000 9.46 0.00 34.93 4.34
1031 1374 0.107312 CGTCCCTTCTACCGGAGAGA 60.107 60.000 9.46 7.73 34.93 3.10
1083 1428 3.306166 CAGACGATACGTTGGCTTTTAGG 59.694 47.826 0.00 0.00 41.37 2.69
1210 1555 1.727511 TTGTGAACGACGAGGACGGT 61.728 55.000 0.00 0.00 44.46 4.83
1219 1564 1.639534 CACCGTGGTTGTGAACGAC 59.360 57.895 0.00 0.00 42.32 4.34
1264 1609 1.363807 CATGAGCGTGCCGGAGATA 59.636 57.895 5.05 0.00 0.00 1.98
1285 1630 4.203076 GGGACGATGACGGGGTCG 62.203 72.222 0.00 4.43 44.46 4.79
1530 1875 3.240134 TTCACCTGCGACCTCTGCC 62.240 63.158 0.00 0.00 0.00 4.85
1600 1945 0.856490 CGCTGTAGTCGACGCTGTAC 60.856 60.000 10.46 7.78 0.00 2.90
1658 2003 3.535962 CTCCTCCTCCAGCGAGCC 61.536 72.222 0.00 0.00 34.49 4.70
1659 2004 1.805428 GATCTCCTCCTCCAGCGAGC 61.805 65.000 0.00 0.00 34.49 5.03
1660 2005 0.467106 TGATCTCCTCCTCCAGCGAG 60.467 60.000 0.00 0.00 35.72 5.03
1661 2006 0.187117 ATGATCTCCTCCTCCAGCGA 59.813 55.000 0.00 0.00 0.00 4.93
2054 2399 0.037882 CTCGAGAACAGCTCCAGCAA 60.038 55.000 6.58 0.00 45.16 3.91
2260 2605 0.257039 GGTTGGCCAGGATCATCACT 59.743 55.000 5.11 0.00 34.09 3.41
2587 2932 4.393778 TCGTCCCACTCCCTCCCC 62.394 72.222 0.00 0.00 0.00 4.81
2649 2994 2.214216 TAGTTGCTCCGGTGGTGCT 61.214 57.895 0.00 0.00 42.02 4.40
2767 3176 8.307483 TGTTCCAAACACTTGAATAAACAAGAA 58.693 29.630 14.00 0.00 46.65 2.52
2808 3218 3.708563 ACACCAAAAGAATTCACACCG 57.291 42.857 8.44 0.00 0.00 4.94
2900 3342 5.382303 CACGGTATGACAAATTGACAGTTC 58.618 41.667 0.00 0.00 0.00 3.01
2917 3359 0.464013 CACAAACCCACACCACGGTA 60.464 55.000 0.00 0.00 0.00 4.02
2920 3362 1.027255 TGTCACAAACCCACACCACG 61.027 55.000 0.00 0.00 0.00 4.94
3054 3605 9.896645 AAATCAGCTAATGAAGAGTGAATTAGA 57.103 29.630 5.97 0.00 42.53 2.10
3071 3622 2.113860 AAAGCAGCCGAAATCAGCTA 57.886 45.000 0.00 0.00 37.18 3.32
3141 3692 1.066002 CAGGTGTGTTTGGTCAGCAAG 59.934 52.381 0.00 0.00 34.97 4.01
3191 3756 4.472286 AGCGGAAAATGTGAATTACGTTG 58.528 39.130 0.00 0.00 38.50 4.10
3210 3775 0.031043 CTCAGCTGGATCTCTGAGCG 59.969 60.000 15.13 8.50 46.45 5.03
3245 3810 7.093727 TGTCTTTGTTACCAATTCAAAAGGTCA 60.094 33.333 0.00 0.00 36.87 4.02
3268 3833 7.009540 GCCTGCAACTTGTATTCAAAATATGTC 59.990 37.037 0.00 0.00 32.87 3.06
3281 3868 0.393448 TGTACGGCCTGCAACTTGTA 59.607 50.000 0.00 0.00 0.00 2.41
3301 3888 7.257722 GTGAACAAAACCAGATTTTTCTCTGA 58.742 34.615 2.73 0.00 44.48 3.27
3320 3907 2.287308 GGCACTGTTTATTGCGTGAACA 60.287 45.455 0.00 0.56 39.81 3.18
3325 3912 3.053831 ACTAGGCACTGTTTATTGCGT 57.946 42.857 0.00 0.00 41.52 5.24
3326 3913 3.747193 CAACTAGGCACTGTTTATTGCG 58.253 45.455 0.00 0.00 41.52 4.85
3338 3925 3.550820 TGTTCTTTCTTGCAACTAGGCA 58.449 40.909 0.00 0.00 43.19 4.75
3401 3988 7.854557 TTATTCGAGCTGAGTTGTACTACTA 57.145 36.000 10.02 0.00 0.00 1.82
3402 3989 6.754702 TTATTCGAGCTGAGTTGTACTACT 57.245 37.500 9.83 9.83 0.00 2.57
3403 3990 7.701078 TGAATTATTCGAGCTGAGTTGTACTAC 59.299 37.037 0.00 0.00 0.00 2.73
3404 3991 7.768240 TGAATTATTCGAGCTGAGTTGTACTA 58.232 34.615 0.00 0.00 0.00 1.82
3423 4099 0.110599 CGCGCCAACGTGTTGAATTA 60.111 50.000 14.06 0.00 44.66 1.40
3647 4334 4.864806 ACATCTATTGCGCAATATACTCCG 59.135 41.667 35.75 24.88 33.29 4.63
3648 4335 6.537566 CAACATCTATTGCGCAATATACTCC 58.462 40.000 35.75 0.00 33.29 3.85
3649 4336 6.017933 GCAACATCTATTGCGCAATATACTC 58.982 40.000 35.75 19.96 45.08 2.59
3650 4337 5.931532 GCAACATCTATTGCGCAATATACT 58.068 37.500 35.75 22.76 45.08 2.12
3661 4348 5.106197 TGGCAGTGTAAAGCAACATCTATTG 60.106 40.000 0.00 0.00 0.00 1.90
3666 4353 3.641437 TTGGCAGTGTAAAGCAACATC 57.359 42.857 0.00 0.00 0.00 3.06
3728 4419 3.869065 TGCGGTAGGAATTCTTAAGGTG 58.131 45.455 5.23 0.00 0.00 4.00
3746 4438 4.362946 TTCGAAAGCGGCGTTGCG 62.363 61.111 9.37 12.21 40.67 4.85
3747 4439 2.795389 GTTCGAAAGCGGCGTTGC 60.795 61.111 9.37 0.00 38.28 4.17
3832 4554 1.228154 AGCCCAAGAACCGTTGTCC 60.228 57.895 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.