Multiple sequence alignment - TraesCS7B01G100100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G100100 chr7B 100.000 3989 0 0 1 3989 114392712 114396700 0.000000e+00 7367.0
1 TraesCS7B01G100100 chr7B 82.748 968 140 22 2099 3056 106859277 106858327 0.000000e+00 837.0
2 TraesCS7B01G100100 chr7B 82.781 453 56 13 1520 1954 106859814 106859366 6.250000e-103 385.0
3 TraesCS7B01G100100 chr7B 89.057 265 25 4 1180 1443 106860183 106859922 3.840000e-85 326.0
4 TraesCS7B01G100100 chr7D 95.023 1949 65 14 1110 3039 152218364 152220299 0.000000e+00 3033.0
5 TraesCS7B01G100100 chr7D 87.830 1060 74 31 98 1109 152217274 152218326 0.000000e+00 1192.0
6 TraesCS7B01G100100 chr7D 84.066 910 111 16 2099 2990 141561911 141562804 0.000000e+00 846.0
7 TraesCS7B01G100100 chr7D 83.151 457 47 23 1519 1954 141561370 141561817 1.340000e-104 390.0
8 TraesCS7B01G100100 chr7D 90.000 250 24 1 1191 1440 141561015 141561263 4.970000e-84 322.0
9 TraesCS7B01G100100 chr7D 86.567 67 6 3 1 66 412003645 412003581 1.990000e-08 71.3
10 TraesCS7B01G100100 chr7D 86.567 67 4 5 1 66 417950269 417950207 7.150000e-08 69.4
11 TraesCS7B01G100100 chr7D 78.448 116 15 6 194 300 102625863 102625749 2.570000e-07 67.6
12 TraesCS7B01G100100 chr7A 96.811 972 24 1 2023 2994 152833469 152834433 0.000000e+00 1616.0
13 TraesCS7B01G100100 chr7A 92.918 946 37 11 1110 2031 152832478 152833417 0.000000e+00 1349.0
14 TraesCS7B01G100100 chr7A 87.935 804 66 18 332 1109 152831642 152832440 0.000000e+00 918.0
15 TraesCS7B01G100100 chr7A 84.292 904 117 16 2099 2990 144171109 144170219 0.000000e+00 859.0
16 TraesCS7B01G100100 chr7A 81.327 814 102 29 1180 1954 144171968 144171166 2.040000e-172 616.0
17 TraesCS7B01G100100 chr7A 95.608 296 10 3 41 336 152711270 152711562 4.670000e-129 472.0
18 TraesCS7B01G100100 chr7A 85.619 452 52 7 3423 3873 502415468 502415907 2.810000e-126 462.0
19 TraesCS7B01G100100 chr7A 90.535 243 23 0 3088 3330 152836410 152836652 4.970000e-84 322.0
20 TraesCS7B01G100100 chr7A 83.750 240 35 4 1191 1428 522022710 522022947 1.440000e-54 224.0
21 TraesCS7B01G100100 chr7A 88.462 104 12 0 3323 3426 152847735 152847838 4.180000e-25 126.0
22 TraesCS7B01G100100 chr7A 94.872 39 2 0 3814 3852 240724585 240724623 1.200000e-05 62.1
23 TraesCS7B01G100100 chr2D 89.058 658 72 0 2333 2990 574656793 574657450 0.000000e+00 817.0
24 TraesCS7B01G100100 chr2D 81.579 722 109 12 2333 3050 575161758 575161057 3.460000e-160 575.0
25 TraesCS7B01G100100 chr2D 79.780 727 117 10 2334 3050 575168922 575168216 5.950000e-138 501.0
26 TraesCS7B01G100100 chr2D 91.102 236 21 0 1198 1433 574655783 574656018 1.790000e-83 320.0
27 TraesCS7B01G100100 chr2D 90.141 213 21 0 1730 1942 575162103 575161891 1.090000e-70 278.0
28 TraesCS7B01G100100 chr2D 87.879 99 12 0 1720 1818 574656109 574656207 2.520000e-22 117.0
29 TraesCS7B01G100100 chr2A 88.450 658 73 1 2333 2990 713016592 713017246 0.000000e+00 791.0
30 TraesCS7B01G100100 chr2A 92.797 236 17 0 1198 1433 713015911 713016146 3.820000e-90 342.0
31 TraesCS7B01G100100 chr2A 92.237 219 17 0 1723 1941 713016240 713016458 1.080000e-80 311.0
32 TraesCS7B01G100100 chr2A 89.231 65 7 0 1019 1083 713015845 713015909 9.190000e-12 82.4
33 TraesCS7B01G100100 chr2A 90.000 60 3 3 1 60 80823952 80823896 1.540000e-09 75.0
34 TraesCS7B01G100100 chr2B 88.298 658 77 0 2333 2990 690931102 690931759 0.000000e+00 789.0
35 TraesCS7B01G100100 chr2B 92.797 236 17 0 1198 1433 690930421 690930656 3.820000e-90 342.0
36 TraesCS7B01G100100 chr2B 92.661 218 16 0 1724 1941 690930751 690930968 8.320000e-82 315.0
37 TraesCS7B01G100100 chr2B 89.062 64 7 0 1019 1082 690930355 690930418 3.300000e-11 80.5
38 TraesCS7B01G100100 chr3A 84.633 449 58 3 3429 3876 12324447 12324009 1.700000e-118 436.0
39 TraesCS7B01G100100 chr3A 79.856 139 15 10 152 279 669177136 669177272 5.490000e-14 89.8
40 TraesCS7B01G100100 chr6A 85.052 388 48 5 3485 3872 578849127 578848750 1.740000e-103 387.0
41 TraesCS7B01G100100 chr6A 88.688 221 25 0 3649 3869 601262534 601262314 1.830000e-68 270.0
42 TraesCS7B01G100100 chr6A 85.027 187 27 1 3429 3614 601263030 601262844 5.260000e-44 189.0
43 TraesCS7B01G100100 chr1D 75.781 256 43 14 46 288 382751414 382751663 1.170000e-20 111.0
44 TraesCS7B01G100100 chr1D 88.333 60 5 2 1 60 373969054 373968997 1.990000e-08 71.3
45 TraesCS7B01G100100 chr1D 86.567 67 6 3 1 66 399563310 399563374 1.990000e-08 71.3
46 TraesCS7B01G100100 chr4D 86.567 67 5 4 1 66 134162273 134162210 1.990000e-08 71.3
47 TraesCS7B01G100100 chr4D 86.792 53 7 0 474 526 397153044 397153096 4.310000e-05 60.2
48 TraesCS7B01G100100 chr4A 86.567 67 5 4 1 66 510076762 510076699 1.990000e-08 71.3
49 TraesCS7B01G100100 chr1B 100.000 38 0 0 1 38 165050105 165050142 1.990000e-08 71.3
50 TraesCS7B01G100100 chr3D 100.000 37 0 0 2 38 423573147 423573183 7.150000e-08 69.4
51 TraesCS7B01G100100 chr4B 100.000 30 0 0 3841 3870 661669605 661669634 5.570000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G100100 chr7B 114392712 114396700 3988 False 7367.000000 7367 100.000000 1 3989 1 chr7B.!!$F1 3988
1 TraesCS7B01G100100 chr7B 106858327 106860183 1856 True 516.000000 837 84.862000 1180 3056 3 chr7B.!!$R1 1876
2 TraesCS7B01G100100 chr7D 152217274 152220299 3025 False 2112.500000 3033 91.426500 98 3039 2 chr7D.!!$F2 2941
3 TraesCS7B01G100100 chr7D 141561015 141562804 1789 False 519.333333 846 85.739000 1191 2990 3 chr7D.!!$F1 1799
4 TraesCS7B01G100100 chr7A 152831642 152836652 5010 False 1051.250000 1616 92.049750 332 3330 4 chr7A.!!$F6 2998
5 TraesCS7B01G100100 chr7A 144170219 144171968 1749 True 737.500000 859 82.809500 1180 2990 2 chr7A.!!$R1 1810
6 TraesCS7B01G100100 chr2D 575168216 575168922 706 True 501.000000 501 79.780000 2334 3050 1 chr2D.!!$R1 716
7 TraesCS7B01G100100 chr2D 575161057 575162103 1046 True 426.500000 575 85.860000 1730 3050 2 chr2D.!!$R2 1320
8 TraesCS7B01G100100 chr2D 574655783 574657450 1667 False 418.000000 817 89.346333 1198 2990 3 chr2D.!!$F1 1792
9 TraesCS7B01G100100 chr2A 713015845 713017246 1401 False 381.600000 791 90.678750 1019 2990 4 chr2A.!!$F1 1971
10 TraesCS7B01G100100 chr2B 690930355 690931759 1404 False 381.625000 789 90.704500 1019 2990 4 chr2B.!!$F1 1971
11 TraesCS7B01G100100 chr6A 601262314 601263030 716 True 229.500000 270 86.857500 3429 3869 2 chr6A.!!$R2 440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1022 0.887387 TAACCAGTGAGCCAAACGCC 60.887 55.0 0.0 0.0 38.78 5.68 F
1710 1856 0.698238 TGTTCTTCTGGTGGGATGGG 59.302 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2905 0.386476 CCAGGTACGCGCCATTAGTA 59.614 55.0 5.73 0.0 0.00 1.82 R
3621 6214 0.101399 CGAGACTAGCGGATGCAACT 59.899 55.0 0.00 0.0 46.23 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.587037 GCTATGCATCTCCTAGATAGATCTT 57.413 40.000 0.19 0.00 38.32 2.40
25 26 7.428020 GCTATGCATCTCCTAGATAGATCTTG 58.572 42.308 0.19 0.00 38.32 3.02
26 27 5.657826 TGCATCTCCTAGATAGATCTTGC 57.342 43.478 0.00 0.69 38.32 4.01
27 28 4.157472 TGCATCTCCTAGATAGATCTTGCG 59.843 45.833 0.00 0.00 36.48 4.85
28 29 4.157656 GCATCTCCTAGATAGATCTTGCGT 59.842 45.833 0.00 0.00 38.32 5.24
29 30 5.639757 CATCTCCTAGATAGATCTTGCGTG 58.360 45.833 0.00 0.00 38.32 5.34
30 31 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
31 32 5.000591 TCTCCTAGATAGATCTTGCGTGAG 58.999 45.833 0.00 1.23 38.32 3.51
32 33 4.720046 TCCTAGATAGATCTTGCGTGAGT 58.280 43.478 0.00 0.00 38.32 3.41
33 34 4.517075 TCCTAGATAGATCTTGCGTGAGTG 59.483 45.833 0.00 0.00 38.32 3.51
34 35 4.277174 CCTAGATAGATCTTGCGTGAGTGT 59.723 45.833 0.00 0.00 38.32 3.55
35 36 5.470437 CCTAGATAGATCTTGCGTGAGTGTA 59.530 44.000 0.00 0.00 38.32 2.90
36 37 5.431420 AGATAGATCTTGCGTGAGTGTAG 57.569 43.478 0.00 0.00 31.97 2.74
37 38 2.949451 AGATCTTGCGTGAGTGTAGG 57.051 50.000 0.00 0.00 0.00 3.18
38 39 2.171840 AGATCTTGCGTGAGTGTAGGT 58.828 47.619 0.00 0.00 0.00 3.08
39 40 3.353557 AGATCTTGCGTGAGTGTAGGTA 58.646 45.455 0.00 0.00 0.00 3.08
40 41 3.378742 AGATCTTGCGTGAGTGTAGGTAG 59.621 47.826 0.00 0.00 0.00 3.18
41 42 2.786777 TCTTGCGTGAGTGTAGGTAGA 58.213 47.619 0.00 0.00 0.00 2.59
42 43 3.151554 TCTTGCGTGAGTGTAGGTAGAA 58.848 45.455 0.00 0.00 0.00 2.10
43 44 3.762288 TCTTGCGTGAGTGTAGGTAGAAT 59.238 43.478 0.00 0.00 0.00 2.40
44 45 4.945543 TCTTGCGTGAGTGTAGGTAGAATA 59.054 41.667 0.00 0.00 0.00 1.75
45 46 4.627611 TGCGTGAGTGTAGGTAGAATAC 57.372 45.455 0.00 0.00 42.04 1.89
46 47 4.267536 TGCGTGAGTGTAGGTAGAATACT 58.732 43.478 0.00 0.00 42.51 2.12
47 48 5.430886 TGCGTGAGTGTAGGTAGAATACTA 58.569 41.667 0.00 0.00 42.51 1.82
48 49 5.526479 TGCGTGAGTGTAGGTAGAATACTAG 59.474 44.000 0.00 0.00 42.51 2.57
49 50 5.560567 GCGTGAGTGTAGGTAGAATACTAGC 60.561 48.000 0.00 0.00 42.51 3.42
61 62 8.023050 GGTAGAATACTAGCTAATTGCATGTG 57.977 38.462 0.00 0.00 42.56 3.21
62 63 6.551385 AGAATACTAGCTAATTGCATGTGC 57.449 37.500 0.00 0.00 45.94 4.57
63 64 7.171508 GTAGAATACTAGCTAATTGCATGTGCA 59.828 37.037 3.09 3.09 43.69 4.57
74 75 1.286501 GCATGTGCATTGCAATGAGG 58.713 50.000 37.36 21.83 41.47 3.86
75 76 1.134936 GCATGTGCATTGCAATGAGGA 60.135 47.619 37.36 21.61 41.47 3.71
76 77 2.536365 CATGTGCATTGCAATGAGGAC 58.464 47.619 37.36 28.04 41.47 3.85
77 78 1.618487 TGTGCATTGCAATGAGGACA 58.382 45.000 37.36 29.83 41.47 4.02
78 79 2.172679 TGTGCATTGCAATGAGGACAT 58.827 42.857 37.36 0.82 41.47 3.06
79 80 2.094442 TGTGCATTGCAATGAGGACATG 60.094 45.455 37.36 15.03 41.47 3.21
80 81 1.134936 TGCATTGCAATGAGGACATGC 60.135 47.619 37.36 23.62 38.70 4.06
81 82 1.134936 GCATTGCAATGAGGACATGCA 60.135 47.619 37.36 0.00 38.70 3.96
82 83 2.483013 GCATTGCAATGAGGACATGCAT 60.483 45.455 37.36 0.00 38.85 3.96
83 84 3.243602 GCATTGCAATGAGGACATGCATA 60.244 43.478 37.36 0.00 38.85 3.14
84 85 4.560716 GCATTGCAATGAGGACATGCATAT 60.561 41.667 37.36 0.00 38.85 1.78
85 86 5.538118 CATTGCAATGAGGACATGCATATT 58.462 37.500 31.47 0.00 38.85 1.28
86 87 5.601583 TTGCAATGAGGACATGCATATTT 57.398 34.783 0.00 0.00 38.85 1.40
87 88 4.939271 TGCAATGAGGACATGCATATTTG 58.061 39.130 0.00 0.00 36.47 2.32
88 89 4.645588 TGCAATGAGGACATGCATATTTGA 59.354 37.500 0.00 0.00 36.47 2.69
89 90 5.220381 GCAATGAGGACATGCATATTTGAG 58.780 41.667 0.00 0.00 36.79 3.02
90 91 5.221185 GCAATGAGGACATGCATATTTGAGT 60.221 40.000 0.00 0.00 36.79 3.41
91 92 6.206498 CAATGAGGACATGCATATTTGAGTG 58.794 40.000 0.00 0.00 36.79 3.51
92 93 4.201657 TGAGGACATGCATATTTGAGTGG 58.798 43.478 0.00 0.00 0.00 4.00
93 94 4.202441 GAGGACATGCATATTTGAGTGGT 58.798 43.478 0.00 0.00 0.00 4.16
94 95 4.603131 AGGACATGCATATTTGAGTGGTT 58.397 39.130 0.00 0.00 0.00 3.67
95 96 5.018809 AGGACATGCATATTTGAGTGGTTT 58.981 37.500 0.00 0.00 0.00 3.27
96 97 6.186957 AGGACATGCATATTTGAGTGGTTTA 58.813 36.000 0.00 0.00 0.00 2.01
112 113 6.811253 GTGGTTTAACACTAATCATGTCCA 57.189 37.500 0.00 0.00 38.32 4.02
114 115 7.653647 GTGGTTTAACACTAATCATGTCCAAA 58.346 34.615 0.00 0.00 38.32 3.28
166 167 9.777008 AAATTATTTGAGTATGGGTAGGGAAAA 57.223 29.630 0.00 0.00 0.00 2.29
169 170 3.460825 TGAGTATGGGTAGGGAAAAGCT 58.539 45.455 0.00 0.00 0.00 3.74
231 232 6.723515 TGATTTGATTTGGGTATTGAAGGACA 59.276 34.615 0.00 0.00 0.00 4.02
239 240 5.650283 TGGGTATTGAAGGACAAGGAAAAT 58.350 37.500 0.00 0.00 42.02 1.82
304 306 7.691993 AGTTAATGTAGGACATGGTTAGGAT 57.308 36.000 0.00 0.00 37.97 3.24
348 350 2.567615 AGTCCCAAGAGACATACACACC 59.432 50.000 0.00 0.00 39.34 4.16
349 351 2.301870 GTCCCAAGAGACATACACACCA 59.698 50.000 0.00 0.00 36.73 4.17
372 374 9.676861 ACCAGTTTAATAGTAGGGATTTTGTAC 57.323 33.333 0.00 0.00 0.00 2.90
382 384 7.985476 AGTAGGGATTTTGTACGATTTGATTG 58.015 34.615 0.00 0.00 0.00 2.67
396 398 5.106157 CGATTTGATTGGATTATGGGTAGGC 60.106 44.000 0.00 0.00 0.00 3.93
472 474 4.974645 TGGGTGTGTGTAAGAGAAGAAT 57.025 40.909 0.00 0.00 0.00 2.40
494 496 7.653311 AGAATAGAAAAGGTGTGATTTTGTTGC 59.347 33.333 0.00 0.00 30.22 4.17
506 508 5.063564 GTGATTTTGTTGCGGTTTTGGTAAA 59.936 36.000 0.00 0.00 0.00 2.01
559 561 2.439553 TTTGGGCGGAGGGCTGAATT 62.440 55.000 0.00 0.00 42.94 2.17
697 716 3.496870 GGTATGGACAGGGCAAGATAAGG 60.497 52.174 0.00 0.00 0.00 2.69
698 717 1.965414 TGGACAGGGCAAGATAAGGA 58.035 50.000 0.00 0.00 0.00 3.36
699 718 2.274542 TGGACAGGGCAAGATAAGGAA 58.725 47.619 0.00 0.00 0.00 3.36
788 807 4.814771 AGGGACAAAAGTTGAGTCTAAACG 59.185 41.667 7.61 0.00 32.65 3.60
791 810 6.647895 GGGACAAAAGTTGAGTCTAAACGATA 59.352 38.462 7.61 0.00 32.65 2.92
793 812 9.362539 GGACAAAAGTTGAGTCTAAACGATATA 57.637 33.333 7.61 0.00 32.65 0.86
800 819 8.958506 AGTTGAGTCTAAACGATATACAGACTT 58.041 33.333 4.23 0.00 44.48 3.01
881 916 7.870509 TTAGCAGCAAAGATCATACTGAAAT 57.129 32.000 8.65 0.00 0.00 2.17
918 953 7.747809 ATCCCTAGATTTCTTCTTTGTCTCT 57.252 36.000 0.00 0.00 35.79 3.10
926 963 6.610741 TTTCTTCTTTGTCTCTTTGAGCTC 57.389 37.500 6.82 6.82 0.00 4.09
950 987 3.119096 GCTCCCGAAACGTGGCTC 61.119 66.667 0.00 0.00 0.00 4.70
956 993 2.496871 TCCCGAAACGTGGCTCTAATAA 59.503 45.455 0.00 0.00 0.00 1.40
957 994 2.606272 CCCGAAACGTGGCTCTAATAAC 59.394 50.000 0.00 0.00 0.00 1.89
958 995 2.606272 CCGAAACGTGGCTCTAATAACC 59.394 50.000 0.00 0.00 0.00 2.85
959 996 3.255725 CGAAACGTGGCTCTAATAACCA 58.744 45.455 0.00 0.00 0.00 3.67
961 998 3.975168 AACGTGGCTCTAATAACCAGT 57.025 42.857 0.00 0.00 33.12 4.00
963 1000 2.829720 ACGTGGCTCTAATAACCAGTGA 59.170 45.455 0.00 0.00 33.12 3.41
973 1022 0.887387 TAACCAGTGAGCCAAACGCC 60.887 55.000 0.00 0.00 38.78 5.68
981 1030 2.180159 GAGCCAAACGCCCTACTCCA 62.180 60.000 0.00 0.00 38.78 3.86
982 1031 2.038837 GCCAAACGCCCTACTCCAC 61.039 63.158 0.00 0.00 0.00 4.02
990 1039 1.677552 CCCTACTCCACCACACCAC 59.322 63.158 0.00 0.00 0.00 4.16
1010 1059 4.868116 TAGCGAAATGGCCCGGGC 62.868 66.667 38.57 38.57 41.06 6.13
1088 1137 3.993535 GCCCAAGAGAACAGGCAG 58.006 61.111 0.00 0.00 45.07 4.85
1232 1318 1.482621 CGAGCGCGCACATCATAACT 61.483 55.000 35.10 8.08 0.00 2.24
1464 1572 0.951558 GTGGCGTGAACATCAAACCT 59.048 50.000 2.70 0.00 0.00 3.50
1498 1606 2.845967 GCGAATTCAGGCAATGTTTACG 59.154 45.455 6.22 0.00 0.00 3.18
1515 1627 1.293498 CGCTGCTACCTTGACCTGT 59.707 57.895 0.00 0.00 0.00 4.00
1683 1829 1.472878 TCACTTCCGATCTCCTGAACG 59.527 52.381 0.00 0.00 38.06 3.95
1696 1842 2.948979 TCCTGAACGCATTGTTTGTTCT 59.051 40.909 14.90 0.00 42.09 3.01
1698 1844 3.730715 CCTGAACGCATTGTTTGTTCTTC 59.269 43.478 14.90 0.00 42.09 2.87
1700 1846 4.350346 TGAACGCATTGTTTGTTCTTCTG 58.650 39.130 14.90 0.00 42.09 3.02
1702 1848 2.687935 ACGCATTGTTTGTTCTTCTGGT 59.312 40.909 0.00 0.00 0.00 4.00
1706 1852 3.374042 TTGTTTGTTCTTCTGGTGGGA 57.626 42.857 0.00 0.00 0.00 4.37
1707 1853 3.593442 TGTTTGTTCTTCTGGTGGGAT 57.407 42.857 0.00 0.00 0.00 3.85
1708 1854 3.221771 TGTTTGTTCTTCTGGTGGGATG 58.778 45.455 0.00 0.00 0.00 3.51
1709 1855 2.558359 GTTTGTTCTTCTGGTGGGATGG 59.442 50.000 0.00 0.00 0.00 3.51
1710 1856 0.698238 TGTTCTTCTGGTGGGATGGG 59.302 55.000 0.00 0.00 0.00 4.00
1992 2478 6.077838 CAGACTTTGTATTTCCGTTAAGCAC 58.922 40.000 0.00 0.00 0.00 4.40
2008 2501 2.000048 AGCACTTAATGGAAAGGGGGA 59.000 47.619 0.00 0.00 30.13 4.81
2277 2868 4.084066 TGTCACAAAGATTCACATACACGC 60.084 41.667 0.00 0.00 0.00 5.34
2293 2885 2.032924 ACACGCTTGCCAAAAAGAGTAC 59.967 45.455 0.00 0.00 38.00 2.73
2324 2916 4.541085 AAATTACGGTTACTAATGGCGC 57.459 40.909 0.00 0.00 0.00 6.53
2592 3289 3.083349 TGCCAGCCCATCTACGCT 61.083 61.111 0.00 0.00 35.10 5.07
2928 3625 4.664677 GTGGCAGTGACCGTCGCT 62.665 66.667 8.86 8.86 37.80 4.93
3063 5575 7.790861 AGCCTTTTGTCGATAAATAAAAACG 57.209 32.000 8.23 0.00 0.00 3.60
3072 5584 8.228464 TGTCGATAAATAAAAACGTGTGCATTA 58.772 29.630 0.00 0.00 0.00 1.90
3145 5737 7.624549 ACTTCTATTGAGAGGCTTGATAAACA 58.375 34.615 0.00 0.00 31.98 2.83
3153 5745 5.593010 AGAGGCTTGATAAACATAGACGTC 58.407 41.667 7.70 7.70 0.00 4.34
3163 5755 7.484007 TGATAAACATAGACGTCGTTCTTTCTC 59.516 37.037 10.46 9.32 0.00 2.87
3165 5757 3.434641 ACATAGACGTCGTTCTTTCTCGA 59.565 43.478 10.46 0.00 0.00 4.04
3169 5761 2.391879 ACGTCGTTCTTTCTCGAAAGG 58.608 47.619 16.80 4.30 45.80 3.11
3210 5802 0.881118 CACCTTGTGAAATGGTCCCG 59.119 55.000 0.00 0.00 34.10 5.14
3235 5827 7.496346 AGTCTGTAGATCCAAATGTAAAGGA 57.504 36.000 0.00 0.00 35.59 3.36
3236 5828 7.918076 AGTCTGTAGATCCAAATGTAAAGGAA 58.082 34.615 0.00 0.00 34.62 3.36
3245 5837 5.001232 CCAAATGTAAAGGAAGACTCGGAA 58.999 41.667 0.00 0.00 0.00 4.30
3253 5845 7.817962 TGTAAAGGAAGACTCGGAATTAAAGAG 59.182 37.037 3.59 3.59 37.96 2.85
3254 5846 6.361768 AAGGAAGACTCGGAATTAAAGAGT 57.638 37.500 8.98 8.98 46.61 3.24
3257 5849 5.932883 GGAAGACTCGGAATTAAAGAGTTGT 59.067 40.000 10.15 3.70 44.30 3.32
3260 5852 6.989659 AGACTCGGAATTAAAGAGTTGTGTA 58.010 36.000 10.15 0.00 44.30 2.90
3263 5855 7.439381 ACTCGGAATTAAAGAGTTGTGTAAGA 58.561 34.615 4.65 0.00 41.93 2.10
3265 5857 8.842358 TCGGAATTAAAGAGTTGTGTAAGAAT 57.158 30.769 0.00 0.00 0.00 2.40
3280 5872 9.778741 TTGTGTAAGAATAATATTAGCCTCCTG 57.221 33.333 1.02 0.00 0.00 3.86
3289 5881 9.533831 AATAATATTAGCCTCCTGGTTAAATGG 57.466 33.333 1.02 0.00 41.28 3.16
3306 5898 5.722021 AAATGGTGGTGGAAACTTGATAC 57.278 39.130 0.00 0.00 0.00 2.24
3308 5900 2.224917 TGGTGGTGGAAACTTGATACCC 60.225 50.000 0.00 0.00 0.00 3.69
3330 5922 5.075493 CCAAGATAGGCTTTGGCAAGATAT 58.925 41.667 3.62 0.00 40.87 1.63
3331 5923 5.537674 CCAAGATAGGCTTTGGCAAGATATT 59.462 40.000 3.62 0.00 40.87 1.28
3332 5924 6.716628 CCAAGATAGGCTTTGGCAAGATATTA 59.283 38.462 3.62 0.00 40.87 0.98
3333 5925 7.395489 CCAAGATAGGCTTTGGCAAGATATTAT 59.605 37.037 3.62 0.00 40.87 1.28
3334 5926 9.453572 CAAGATAGGCTTTGGCAAGATATTATA 57.546 33.333 0.00 0.00 40.87 0.98
3336 5928 9.678260 AGATAGGCTTTGGCAAGATATTATAAG 57.322 33.333 0.00 0.00 40.87 1.73
3337 5929 9.672673 GATAGGCTTTGGCAAGATATTATAAGA 57.327 33.333 0.00 0.00 40.87 2.10
3338 5930 7.992754 AGGCTTTGGCAAGATATTATAAGAG 57.007 36.000 0.00 0.00 40.87 2.85
3339 5931 6.432472 AGGCTTTGGCAAGATATTATAAGAGC 59.568 38.462 0.00 1.72 40.87 4.09
3340 5932 6.432472 GGCTTTGGCAAGATATTATAAGAGCT 59.568 38.462 10.72 0.00 40.87 4.09
3341 5933 7.607991 GGCTTTGGCAAGATATTATAAGAGCTA 59.392 37.037 10.72 0.00 40.87 3.32
3342 5934 9.003658 GCTTTGGCAAGATATTATAAGAGCTAA 57.996 33.333 0.00 0.00 38.54 3.09
3360 5952 9.846248 AAGAGCTAAATATTTGAAACATGACAC 57.154 29.630 11.05 0.00 0.00 3.67
3361 5953 9.236006 AGAGCTAAATATTTGAAACATGACACT 57.764 29.630 11.05 0.00 0.00 3.55
3362 5954 9.282247 GAGCTAAATATTTGAAACATGACACTG 57.718 33.333 11.05 0.00 0.00 3.66
3363 5955 8.796475 AGCTAAATATTTGAAACATGACACTGT 58.204 29.630 11.05 0.00 0.00 3.55
3364 5956 8.853345 GCTAAATATTTGAAACATGACACTGTG 58.147 33.333 11.05 6.19 0.00 3.66
3365 5957 9.345517 CTAAATATTTGAAACATGACACTGTGG 57.654 33.333 13.09 0.00 0.00 4.17
3366 5958 3.435105 TTTGAAACATGACACTGTGGC 57.565 42.857 13.09 10.15 0.00 5.01
3367 5959 1.317613 TGAAACATGACACTGTGGCC 58.682 50.000 11.84 0.00 0.00 5.36
3368 5960 1.317613 GAAACATGACACTGTGGCCA 58.682 50.000 11.84 0.00 0.00 5.36
3369 5961 1.001378 GAAACATGACACTGTGGCCAC 60.001 52.381 29.67 29.67 0.00 5.01
3370 5962 0.183492 AACATGACACTGTGGCCACT 59.817 50.000 34.75 16.57 0.00 4.00
3371 5963 0.535780 ACATGACACTGTGGCCACTG 60.536 55.000 33.87 33.87 36.50 3.66
3372 5964 0.535780 CATGACACTGTGGCCACTGT 60.536 55.000 35.13 35.13 42.93 3.55
3373 5965 0.250467 ATGACACTGTGGCCACTGTC 60.250 55.000 37.12 35.88 40.73 3.51
3374 5966 1.146041 GACACTGTGGCCACTGTCA 59.854 57.895 35.76 19.88 40.73 3.58
3375 5967 0.463654 GACACTGTGGCCACTGTCAA 60.464 55.000 35.76 19.52 40.73 3.18
3376 5968 0.034574 ACACTGTGGCCACTGTCAAA 60.035 50.000 37.12 17.15 40.73 2.69
3377 5969 0.664761 CACTGTGGCCACTGTCAAAG 59.335 55.000 37.12 26.38 40.73 2.77
3378 5970 0.466189 ACTGTGGCCACTGTCAAAGG 60.466 55.000 35.13 17.68 35.61 3.11
3379 5971 0.179020 CTGTGGCCACTGTCAAAGGA 60.179 55.000 34.75 11.86 26.95 3.36
3380 5972 0.257328 TGTGGCCACTGTCAAAGGAA 59.743 50.000 34.75 9.34 0.00 3.36
3381 5973 1.341482 TGTGGCCACTGTCAAAGGAAA 60.341 47.619 34.75 8.78 0.00 3.13
3382 5974 1.754226 GTGGCCACTGTCAAAGGAAAA 59.246 47.619 29.12 0.00 0.00 2.29
3383 5975 2.365293 GTGGCCACTGTCAAAGGAAAAT 59.635 45.455 29.12 0.00 0.00 1.82
3384 5976 3.037549 TGGCCACTGTCAAAGGAAAATT 58.962 40.909 0.00 0.00 0.00 1.82
3385 5977 3.069443 TGGCCACTGTCAAAGGAAAATTC 59.931 43.478 0.00 0.00 0.00 2.17
3386 5978 3.321968 GGCCACTGTCAAAGGAAAATTCT 59.678 43.478 0.00 0.00 0.00 2.40
3387 5979 4.202253 GGCCACTGTCAAAGGAAAATTCTT 60.202 41.667 0.00 0.00 0.00 2.52
3388 5980 5.359756 GCCACTGTCAAAGGAAAATTCTTT 58.640 37.500 0.00 0.00 35.09 2.52
3400 5992 9.593565 AAAGGAAAATTCTTTGACTCTCCTATT 57.406 29.630 0.00 0.00 33.68 1.73
3401 5993 9.593565 AAGGAAAATTCTTTGACTCTCCTATTT 57.406 29.630 0.00 0.00 0.00 1.40
3402 5994 9.018582 AGGAAAATTCTTTGACTCTCCTATTTG 57.981 33.333 0.00 0.00 0.00 2.32
3403 5995 8.246871 GGAAAATTCTTTGACTCTCCTATTTGG 58.753 37.037 0.00 0.00 37.10 3.28
3404 5996 8.940397 AAAATTCTTTGACTCTCCTATTTGGA 57.060 30.769 0.00 0.00 43.86 3.53
3405 5997 9.539194 AAAATTCTTTGACTCTCCTATTTGGAT 57.461 29.630 0.00 0.00 45.16 3.41
3406 5998 8.517062 AATTCTTTGACTCTCCTATTTGGATG 57.483 34.615 0.00 0.00 45.16 3.51
3407 5999 5.994250 TCTTTGACTCTCCTATTTGGATGG 58.006 41.667 0.00 0.00 45.16 3.51
3408 6000 3.845781 TGACTCTCCTATTTGGATGGC 57.154 47.619 0.00 0.00 45.16 4.40
3409 6001 2.439507 TGACTCTCCTATTTGGATGGCC 59.560 50.000 0.00 0.00 45.16 5.36
3410 6002 2.439507 GACTCTCCTATTTGGATGGCCA 59.560 50.000 8.56 8.56 45.16 5.36
3411 6003 2.173569 ACTCTCCTATTTGGATGGCCAC 59.826 50.000 8.16 1.35 45.94 5.01
3412 6004 2.441001 CTCTCCTATTTGGATGGCCACT 59.559 50.000 8.16 0.00 45.94 4.00
3413 6005 3.648067 CTCTCCTATTTGGATGGCCACTA 59.352 47.826 8.16 0.00 45.94 2.74
3414 6006 4.242811 TCTCCTATTTGGATGGCCACTAT 58.757 43.478 8.16 0.00 45.94 2.12
3415 6007 4.042062 TCTCCTATTTGGATGGCCACTATG 59.958 45.833 8.16 0.00 45.94 2.23
3416 6008 3.980022 TCCTATTTGGATGGCCACTATGA 59.020 43.478 8.16 0.00 45.94 2.15
3417 6009 4.415179 TCCTATTTGGATGGCCACTATGAA 59.585 41.667 8.16 0.00 45.94 2.57
3418 6010 4.763793 CCTATTTGGATGGCCACTATGAAG 59.236 45.833 8.16 0.08 45.94 3.02
3419 6011 2.734755 TTGGATGGCCACTATGAAGG 57.265 50.000 8.16 0.00 45.94 3.46
3420 6012 1.595311 TGGATGGCCACTATGAAGGT 58.405 50.000 8.16 0.00 39.92 3.50
3421 6013 1.922447 TGGATGGCCACTATGAAGGTT 59.078 47.619 8.16 0.00 39.92 3.50
3422 6014 3.119319 TGGATGGCCACTATGAAGGTTA 58.881 45.455 8.16 0.00 39.92 2.85
3423 6015 3.525609 TGGATGGCCACTATGAAGGTTAA 59.474 43.478 8.16 0.00 39.92 2.01
3424 6016 4.017958 TGGATGGCCACTATGAAGGTTAAA 60.018 41.667 8.16 0.00 39.92 1.52
3425 6017 4.580580 GGATGGCCACTATGAAGGTTAAAG 59.419 45.833 8.16 0.00 0.00 1.85
3426 6018 4.919774 TGGCCACTATGAAGGTTAAAGA 57.080 40.909 0.00 0.00 0.00 2.52
3427 6019 4.843728 TGGCCACTATGAAGGTTAAAGAG 58.156 43.478 0.00 0.00 0.00 2.85
3435 6027 7.124448 CACTATGAAGGTTAAAGAGTACTCCCT 59.876 40.741 19.38 14.62 0.00 4.20
3443 6035 1.222936 GAGTACTCCCTCCGTCCGA 59.777 63.158 12.13 0.00 0.00 4.55
3451 6043 2.954318 CTCCCTCCGTCCGAGTTTATTA 59.046 50.000 0.00 0.00 36.82 0.98
3452 6044 3.364549 TCCCTCCGTCCGAGTTTATTAA 58.635 45.455 0.00 0.00 36.82 1.40
3454 6046 3.131755 CCCTCCGTCCGAGTTTATTAAGT 59.868 47.826 0.00 0.00 36.82 2.24
3476 6069 0.899019 GTGAGGAGGGAGAGTTGTCC 59.101 60.000 0.00 0.00 35.64 4.02
3495 6088 2.021441 TCCCTTCCTATTAGGCCCTTCA 60.021 50.000 0.00 0.00 34.61 3.02
3510 6103 2.168496 CCTTCAGTCCGACTACCAAGA 58.832 52.381 0.00 0.00 0.00 3.02
3519 6112 7.716123 TCAGTCCGACTACCAAGAAAAATTAAA 59.284 33.333 0.00 0.00 0.00 1.52
3522 6115 8.508875 GTCCGACTACCAAGAAAAATTAAATGA 58.491 33.333 0.00 0.00 0.00 2.57
3537 6130 7.493743 AATTAAATGAAAACAGTGCATGCAA 57.506 28.000 24.58 4.09 0.00 4.08
3543 6136 0.886043 AACAGTGCATGCAAGCGAGA 60.886 50.000 24.58 0.00 37.31 4.04
3548 6141 2.096496 AGTGCATGCAAGCGAGATTAAC 59.904 45.455 24.58 5.09 37.31 2.01
3550 6143 1.327460 GCATGCAAGCGAGATTAACGA 59.673 47.619 14.21 0.00 0.00 3.85
3551 6144 2.598439 GCATGCAAGCGAGATTAACGAG 60.598 50.000 14.21 0.00 0.00 4.18
3553 6146 2.259618 TGCAAGCGAGATTAACGAGTC 58.740 47.619 0.00 0.00 0.00 3.36
3554 6147 2.259618 GCAAGCGAGATTAACGAGTCA 58.740 47.619 0.00 0.00 0.00 3.41
3593 6186 5.404366 GGTGATAATTAATTCGCAGACGCTA 59.596 40.000 3.39 0.00 39.84 4.26
3594 6187 6.400091 GGTGATAATTAATTCGCAGACGCTAG 60.400 42.308 3.39 0.00 39.84 3.42
3602 6195 0.595825 CGCAGACGCTAGATGCATGA 60.596 55.000 2.46 0.00 43.06 3.07
3614 6207 4.548991 AGATGCATGAAGATTTCGCTTC 57.451 40.909 2.46 0.00 43.53 3.86
3615 6208 2.811902 TGCATGAAGATTTCGCTTCG 57.188 45.000 0.00 0.00 45.62 3.79
3616 6209 2.345876 TGCATGAAGATTTCGCTTCGA 58.654 42.857 0.00 0.00 45.62 3.71
3617 6210 2.938451 TGCATGAAGATTTCGCTTCGAT 59.062 40.909 0.00 0.00 45.62 3.59
3618 6211 3.374988 TGCATGAAGATTTCGCTTCGATT 59.625 39.130 0.00 0.00 45.62 3.34
3619 6212 3.722780 GCATGAAGATTTCGCTTCGATTG 59.277 43.478 0.00 0.00 45.62 2.67
3620 6213 3.389687 TGAAGATTTCGCTTCGATTGC 57.610 42.857 0.00 0.00 45.62 3.56
3621 6214 2.741517 TGAAGATTTCGCTTCGATTGCA 59.258 40.909 10.74 0.00 45.62 4.08
3622 6215 3.181517 TGAAGATTTCGCTTCGATTGCAG 60.182 43.478 10.74 4.72 45.62 4.41
3623 6216 2.350522 AGATTTCGCTTCGATTGCAGT 58.649 42.857 10.74 0.00 35.23 4.40
3624 6217 2.744202 AGATTTCGCTTCGATTGCAGTT 59.256 40.909 10.74 0.00 35.23 3.16
3690 6568 1.648467 GAGGGAAAGTCGTGCATGCC 61.648 60.000 16.68 5.63 0.00 4.40
3698 6576 2.507547 CGTGCATGCCATTGGTGC 60.508 61.111 16.68 10.56 39.26 5.01
3732 6610 7.575720 GCAGGATTGTGGCAGTATAAATTATCC 60.576 40.741 0.00 0.00 0.00 2.59
3735 6613 4.968259 TGTGGCAGTATAAATTATCCGCT 58.032 39.130 0.00 0.00 0.00 5.52
3753 6631 3.503363 CCGCTGTAAATGACATGCCATAT 59.497 43.478 0.00 0.00 37.45 1.78
3766 6644 3.301794 TGCCATATGAAGCATCAGGTT 57.698 42.857 3.65 0.00 39.39 3.50
3768 6646 4.989277 TGCCATATGAAGCATCAGGTTAT 58.011 39.130 3.65 0.00 39.39 1.89
3775 6653 5.339008 TGAAGCATCAGGTTATTACTCGT 57.661 39.130 0.00 0.00 35.19 4.18
3780 6658 4.503296 GCATCAGGTTATTACTCGTGGGAT 60.503 45.833 0.00 0.00 0.00 3.85
3788 6666 4.706842 ATTACTCGTGGGATAATGCCTT 57.293 40.909 0.00 0.00 0.00 4.35
3796 6674 5.467399 TCGTGGGATAATGCCTTAATTAACG 59.533 40.000 0.00 0.00 29.80 3.18
3799 6677 5.009210 TGGGATAATGCCTTAATTAACGTGC 59.991 40.000 0.00 0.00 0.00 5.34
3800 6678 5.009210 GGGATAATGCCTTAATTAACGTGCA 59.991 40.000 12.24 12.24 0.00 4.57
3810 6688 4.852609 AATTAACGTGCACGAATAGGAC 57.147 40.909 42.94 0.00 43.02 3.85
3821 6699 1.383523 GAATAGGACACTGCCTTGGC 58.616 55.000 4.43 4.43 39.50 4.52
3837 6715 3.508840 GCCTTGCCAATCCGGTCG 61.509 66.667 0.00 0.00 36.97 4.79
3839 6717 1.153168 CCTTGCCAATCCGGTCGAT 60.153 57.895 0.00 0.00 36.97 3.59
3854 6732 2.105993 GGTCGATGGGCCTAATAAACCT 59.894 50.000 4.53 0.00 0.00 3.50
3869 6747 3.949842 AAACCTGAACGGAGGTAGTAC 57.050 47.619 3.71 0.00 46.29 2.73
3870 6748 2.895242 ACCTGAACGGAGGTAGTACT 57.105 50.000 0.00 0.00 45.09 2.73
3871 6749 4.307032 AACCTGAACGGAGGTAGTACTA 57.693 45.455 0.00 0.00 46.29 1.82
3872 6750 4.516652 ACCTGAACGGAGGTAGTACTAT 57.483 45.455 5.75 0.00 45.09 2.12
3873 6751 5.636903 ACCTGAACGGAGGTAGTACTATA 57.363 43.478 5.75 0.00 45.09 1.31
3874 6752 6.198237 ACCTGAACGGAGGTAGTACTATAT 57.802 41.667 5.75 0.00 45.09 0.86
3875 6753 6.608922 ACCTGAACGGAGGTAGTACTATATT 58.391 40.000 5.75 0.00 45.09 1.28
3876 6754 6.489361 ACCTGAACGGAGGTAGTACTATATTG 59.511 42.308 5.75 0.00 45.09 1.90
3877 6755 6.489361 CCTGAACGGAGGTAGTACTATATTGT 59.511 42.308 5.75 0.00 33.16 2.71
3878 6756 7.014038 CCTGAACGGAGGTAGTACTATATTGTT 59.986 40.741 5.75 7.83 33.16 2.83
3879 6757 7.709947 TGAACGGAGGTAGTACTATATTGTTG 58.290 38.462 5.75 0.00 0.00 3.33
3880 6758 6.645790 ACGGAGGTAGTACTATATTGTTGG 57.354 41.667 5.75 0.00 0.00 3.77
3881 6759 6.131961 ACGGAGGTAGTACTATATTGTTGGT 58.868 40.000 5.75 0.00 0.00 3.67
3882 6760 7.290061 ACGGAGGTAGTACTATATTGTTGGTA 58.710 38.462 5.75 0.00 0.00 3.25
3883 6761 7.446625 ACGGAGGTAGTACTATATTGTTGGTAG 59.553 40.741 5.75 0.00 0.00 3.18
3884 6762 7.094463 CGGAGGTAGTACTATATTGTTGGTAGG 60.094 44.444 5.75 0.00 0.00 3.18
3885 6763 7.178097 GGAGGTAGTACTATATTGTTGGTAGGG 59.822 44.444 5.75 0.00 0.00 3.53
3886 6764 7.829869 AGGTAGTACTATATTGTTGGTAGGGA 58.170 38.462 5.75 0.00 0.00 4.20
3887 6765 8.291745 AGGTAGTACTATATTGTTGGTAGGGAA 58.708 37.037 5.75 0.00 0.00 3.97
3888 6766 8.583296 GGTAGTACTATATTGTTGGTAGGGAAG 58.417 40.741 5.75 0.00 0.00 3.46
3889 6767 9.140874 GTAGTACTATATTGTTGGTAGGGAAGT 57.859 37.037 5.75 0.00 0.00 3.01
3890 6768 8.619683 AGTACTATATTGTTGGTAGGGAAGTT 57.380 34.615 0.00 0.00 0.00 2.66
3891 6769 9.719433 AGTACTATATTGTTGGTAGGGAAGTTA 57.281 33.333 0.00 0.00 0.00 2.24
3892 6770 9.755804 GTACTATATTGTTGGTAGGGAAGTTAC 57.244 37.037 0.00 0.00 0.00 2.50
3893 6771 8.619683 ACTATATTGTTGGTAGGGAAGTTACT 57.380 34.615 0.00 0.00 0.00 2.24
3894 6772 8.702819 ACTATATTGTTGGTAGGGAAGTTACTC 58.297 37.037 0.00 0.00 0.00 2.59
3895 6773 7.750947 ATATTGTTGGTAGGGAAGTTACTCT 57.249 36.000 0.00 0.00 0.00 3.24
3896 6774 5.899631 TTGTTGGTAGGGAAGTTACTCTT 57.100 39.130 0.00 0.00 39.32 2.85
3897 6775 6.999705 TTGTTGGTAGGGAAGTTACTCTTA 57.000 37.500 0.00 0.00 36.40 2.10
3898 6776 6.999705 TGTTGGTAGGGAAGTTACTCTTAA 57.000 37.500 0.00 0.00 36.40 1.85
3899 6777 7.563724 TGTTGGTAGGGAAGTTACTCTTAAT 57.436 36.000 0.00 0.00 36.40 1.40
3900 6778 7.981142 TGTTGGTAGGGAAGTTACTCTTAATT 58.019 34.615 0.00 0.00 36.40 1.40
3901 6779 8.442374 TGTTGGTAGGGAAGTTACTCTTAATTT 58.558 33.333 0.00 0.00 36.40 1.82
3902 6780 9.293404 GTTGGTAGGGAAGTTACTCTTAATTTT 57.707 33.333 0.00 0.00 36.40 1.82
3903 6781 8.857694 TGGTAGGGAAGTTACTCTTAATTTTG 57.142 34.615 0.00 0.00 36.40 2.44
3904 6782 7.886446 TGGTAGGGAAGTTACTCTTAATTTTGG 59.114 37.037 0.00 0.00 36.40 3.28
3905 6783 7.338703 GGTAGGGAAGTTACTCTTAATTTTGGG 59.661 40.741 0.00 0.00 36.40 4.12
3906 6784 6.253758 AGGGAAGTTACTCTTAATTTTGGGG 58.746 40.000 0.00 0.00 36.40 4.96
3907 6785 6.046286 AGGGAAGTTACTCTTAATTTTGGGGA 59.954 38.462 0.00 0.00 36.40 4.81
3908 6786 6.895756 GGGAAGTTACTCTTAATTTTGGGGAT 59.104 38.462 0.00 0.00 36.40 3.85
3909 6787 7.147897 GGGAAGTTACTCTTAATTTTGGGGATG 60.148 40.741 0.00 0.00 36.40 3.51
3910 6788 7.396339 GGAAGTTACTCTTAATTTTGGGGATGT 59.604 37.037 0.00 0.00 36.40 3.06
3911 6789 7.703058 AGTTACTCTTAATTTTGGGGATGTG 57.297 36.000 0.00 0.00 0.00 3.21
3912 6790 6.663523 AGTTACTCTTAATTTTGGGGATGTGG 59.336 38.462 0.00 0.00 0.00 4.17
3913 6791 3.769300 ACTCTTAATTTTGGGGATGTGGC 59.231 43.478 0.00 0.00 0.00 5.01
3914 6792 3.103742 TCTTAATTTTGGGGATGTGGCC 58.896 45.455 0.00 0.00 0.00 5.36
3915 6793 2.630889 TAATTTTGGGGATGTGGCCA 57.369 45.000 0.00 0.00 0.00 5.36
3916 6794 1.278537 AATTTTGGGGATGTGGCCAG 58.721 50.000 5.11 0.00 0.00 4.85
3917 6795 0.618393 ATTTTGGGGATGTGGCCAGG 60.618 55.000 5.11 0.00 0.00 4.45
3918 6796 3.903281 TTTGGGGATGTGGCCAGGC 62.903 63.158 5.11 1.26 0.00 4.85
3920 6798 4.066139 GGGGATGTGGCCAGGCTT 62.066 66.667 5.11 0.00 0.00 4.35
3921 6799 2.037847 GGGATGTGGCCAGGCTTT 59.962 61.111 5.11 0.00 0.00 3.51
3922 6800 2.353610 GGGATGTGGCCAGGCTTTG 61.354 63.158 5.11 0.00 0.00 2.77
3930 6808 3.369921 CCAGGCTTTGGCTTGACC 58.630 61.111 1.78 0.00 46.58 4.02
3931 6809 2.278330 CCAGGCTTTGGCTTGACCC 61.278 63.158 1.78 0.00 46.58 4.46
3932 6810 1.228675 CAGGCTTTGGCTTGACCCT 60.229 57.895 0.00 0.00 46.58 4.34
3933 6811 1.075659 AGGCTTTGGCTTGACCCTC 59.924 57.895 0.00 0.00 33.67 4.30
3934 6812 1.075659 GGCTTTGGCTTGACCCTCT 59.924 57.895 0.00 0.00 37.83 3.69
3935 6813 0.540597 GGCTTTGGCTTGACCCTCTT 60.541 55.000 0.00 0.00 37.83 2.85
3936 6814 1.271926 GGCTTTGGCTTGACCCTCTTA 60.272 52.381 0.00 0.00 37.83 2.10
3937 6815 2.087646 GCTTTGGCTTGACCCTCTTAG 58.912 52.381 0.00 0.00 37.83 2.18
3938 6816 2.716217 CTTTGGCTTGACCCTCTTAGG 58.284 52.381 0.00 0.00 37.83 2.69
3959 6837 4.726583 GGGGAAATCAACCCTTATACTCC 58.273 47.826 0.00 0.00 46.03 3.85
3960 6838 4.415846 GGGGAAATCAACCCTTATACTCCT 59.584 45.833 0.00 0.00 46.03 3.69
3961 6839 5.609708 GGGGAAATCAACCCTTATACTCCTA 59.390 44.000 0.00 0.00 46.03 2.94
3962 6840 6.239915 GGGGAAATCAACCCTTATACTCCTAG 60.240 46.154 0.00 0.00 46.03 3.02
3963 6841 6.329460 GGGAAATCAACCCTTATACTCCTAGT 59.671 42.308 0.00 0.00 43.65 2.57
3964 6842 7.147355 GGGAAATCAACCCTTATACTCCTAGTT 60.147 40.741 0.00 0.00 43.65 2.24
3965 6843 8.272889 GGAAATCAACCCTTATACTCCTAGTTT 58.727 37.037 0.00 0.00 0.00 2.66
3966 6844 9.327628 GAAATCAACCCTTATACTCCTAGTTTC 57.672 37.037 0.00 0.00 0.00 2.78
3967 6845 6.803366 TCAACCCTTATACTCCTAGTTTCC 57.197 41.667 0.00 0.00 0.00 3.13
3968 6846 6.509386 TCAACCCTTATACTCCTAGTTTCCT 58.491 40.000 0.00 0.00 0.00 3.36
3969 6847 6.383147 TCAACCCTTATACTCCTAGTTTCCTG 59.617 42.308 0.00 0.00 0.00 3.86
3970 6848 6.101274 ACCCTTATACTCCTAGTTTCCTGA 57.899 41.667 0.00 0.00 0.00 3.86
3971 6849 6.509386 ACCCTTATACTCCTAGTTTCCTGAA 58.491 40.000 0.00 0.00 0.00 3.02
3972 6850 6.383436 ACCCTTATACTCCTAGTTTCCTGAAC 59.617 42.308 0.00 0.00 38.58 3.18
3974 6852 7.125963 CCCTTATACTCCTAGTTTCCTGAACTT 59.874 40.741 0.00 0.00 46.34 2.66
3975 6853 8.541234 CCTTATACTCCTAGTTTCCTGAACTTT 58.459 37.037 0.00 0.00 46.34 2.66
3976 6854 9.945904 CTTATACTCCTAGTTTCCTGAACTTTT 57.054 33.333 0.00 0.00 46.34 2.27
3977 6855 9.939802 TTATACTCCTAGTTTCCTGAACTTTTC 57.060 33.333 0.00 0.00 46.34 2.29
3978 6856 6.248569 ACTCCTAGTTTCCTGAACTTTTCA 57.751 37.500 0.00 0.00 46.34 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.428020 CAAGATCTATCTAGGAGATGCATAGC 58.572 42.308 0.00 0.00 35.37 2.97
1 2 7.428020 GCAAGATCTATCTAGGAGATGCATAG 58.572 42.308 0.00 0.00 35.37 2.23
2 3 6.039159 CGCAAGATCTATCTAGGAGATGCATA 59.961 42.308 0.00 0.00 35.65 3.14
3 4 5.163530 CGCAAGATCTATCTAGGAGATGCAT 60.164 44.000 0.00 0.00 35.65 3.96
4 5 4.157472 CGCAAGATCTATCTAGGAGATGCA 59.843 45.833 11.48 0.00 35.65 3.96
6 7 5.414144 TCACGCAAGATCTATCTAGGAGATG 59.586 44.000 11.48 2.82 36.70 2.90
7 8 5.565509 TCACGCAAGATCTATCTAGGAGAT 58.434 41.667 0.00 7.55 38.77 2.75
8 9 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
9 10 4.759693 ACTCACGCAAGATCTATCTAGGAG 59.240 45.833 0.00 2.36 43.62 3.69
10 11 4.517075 CACTCACGCAAGATCTATCTAGGA 59.483 45.833 0.00 0.00 43.62 2.94
11 12 4.277174 ACACTCACGCAAGATCTATCTAGG 59.723 45.833 0.00 0.00 43.62 3.02
12 13 5.431420 ACACTCACGCAAGATCTATCTAG 57.569 43.478 0.00 0.00 43.62 2.43
13 14 5.470437 CCTACACTCACGCAAGATCTATCTA 59.530 44.000 0.00 0.00 43.62 1.98
14 15 4.277174 CCTACACTCACGCAAGATCTATCT 59.723 45.833 0.00 0.00 43.62 1.98
15 16 4.036971 ACCTACACTCACGCAAGATCTATC 59.963 45.833 0.00 0.00 43.62 2.08
16 17 3.954904 ACCTACACTCACGCAAGATCTAT 59.045 43.478 0.00 0.00 43.62 1.98
17 18 3.353557 ACCTACACTCACGCAAGATCTA 58.646 45.455 0.00 0.00 43.62 1.98
18 19 2.171840 ACCTACACTCACGCAAGATCT 58.828 47.619 0.00 0.00 43.62 2.75
19 20 2.656560 ACCTACACTCACGCAAGATC 57.343 50.000 0.00 0.00 43.62 2.75
20 21 3.353557 TCTACCTACACTCACGCAAGAT 58.646 45.455 0.00 0.00 43.62 2.40
21 22 2.786777 TCTACCTACACTCACGCAAGA 58.213 47.619 0.00 0.00 43.62 3.02
23 24 4.703575 AGTATTCTACCTACACTCACGCAA 59.296 41.667 0.00 0.00 0.00 4.85
24 25 4.267536 AGTATTCTACCTACACTCACGCA 58.732 43.478 0.00 0.00 0.00 5.24
25 26 4.897025 AGTATTCTACCTACACTCACGC 57.103 45.455 0.00 0.00 0.00 5.34
26 27 5.759273 AGCTAGTATTCTACCTACACTCACG 59.241 44.000 0.00 0.00 0.00 4.35
27 28 8.674263 TTAGCTAGTATTCTACCTACACTCAC 57.326 38.462 0.00 0.00 0.00 3.51
28 29 9.863650 AATTAGCTAGTATTCTACCTACACTCA 57.136 33.333 0.00 0.00 0.00 3.41
30 31 8.578151 GCAATTAGCTAGTATTCTACCTACACT 58.422 37.037 0.00 0.00 41.15 3.55
31 32 8.358148 TGCAATTAGCTAGTATTCTACCTACAC 58.642 37.037 0.00 0.00 45.94 2.90
32 33 8.473358 TGCAATTAGCTAGTATTCTACCTACA 57.527 34.615 0.00 0.00 45.94 2.74
33 34 9.360093 CATGCAATTAGCTAGTATTCTACCTAC 57.640 37.037 0.00 0.00 45.94 3.18
34 35 9.090103 ACATGCAATTAGCTAGTATTCTACCTA 57.910 33.333 0.00 0.00 45.94 3.08
35 36 7.875041 CACATGCAATTAGCTAGTATTCTACCT 59.125 37.037 0.00 0.00 45.94 3.08
36 37 7.360438 GCACATGCAATTAGCTAGTATTCTACC 60.360 40.741 0.00 0.00 45.94 3.18
37 38 7.513968 GCACATGCAATTAGCTAGTATTCTAC 58.486 38.462 0.00 0.00 45.94 2.59
38 39 7.658179 GCACATGCAATTAGCTAGTATTCTA 57.342 36.000 0.00 0.00 45.94 2.10
39 40 6.551385 GCACATGCAATTAGCTAGTATTCT 57.449 37.500 0.00 0.00 45.94 2.40
55 56 1.134936 TCCTCATTGCAATGCACATGC 60.135 47.619 30.57 17.16 44.08 4.06
56 57 2.094442 TGTCCTCATTGCAATGCACATG 60.094 45.455 30.57 14.63 38.71 3.21
57 58 2.172679 TGTCCTCATTGCAATGCACAT 58.827 42.857 30.57 2.08 38.71 3.21
58 59 1.618487 TGTCCTCATTGCAATGCACA 58.382 45.000 30.57 26.59 38.71 4.57
59 60 2.536365 CATGTCCTCATTGCAATGCAC 58.464 47.619 30.57 24.76 38.71 4.57
60 61 1.134936 GCATGTCCTCATTGCAATGCA 60.135 47.619 30.57 23.01 36.36 3.96
61 62 1.134936 TGCATGTCCTCATTGCAATGC 60.135 47.619 30.57 20.05 36.22 3.56
62 63 2.951457 TGCATGTCCTCATTGCAATG 57.049 45.000 29.75 29.75 36.22 2.82
63 64 5.801531 AATATGCATGTCCTCATTGCAAT 57.198 34.783 10.16 5.99 39.47 3.56
64 65 5.127356 TCAAATATGCATGTCCTCATTGCAA 59.873 36.000 10.16 0.00 39.47 4.08
65 66 4.645588 TCAAATATGCATGTCCTCATTGCA 59.354 37.500 10.16 0.00 39.91 4.08
66 67 5.190992 TCAAATATGCATGTCCTCATTGC 57.809 39.130 10.16 0.00 31.15 3.56
67 68 6.206498 CACTCAAATATGCATGTCCTCATTG 58.794 40.000 10.16 3.98 31.15 2.82
68 69 5.301045 CCACTCAAATATGCATGTCCTCATT 59.699 40.000 10.16 0.00 31.15 2.57
69 70 4.825634 CCACTCAAATATGCATGTCCTCAT 59.174 41.667 10.16 0.00 34.21 2.90
70 71 4.201657 CCACTCAAATATGCATGTCCTCA 58.798 43.478 10.16 0.00 0.00 3.86
71 72 4.202441 ACCACTCAAATATGCATGTCCTC 58.798 43.478 10.16 0.00 0.00 3.71
72 73 4.240881 ACCACTCAAATATGCATGTCCT 57.759 40.909 10.16 0.00 0.00 3.85
73 74 4.989279 AACCACTCAAATATGCATGTCC 57.011 40.909 10.16 0.00 0.00 4.02
74 75 7.273381 GTGTTAAACCACTCAAATATGCATGTC 59.727 37.037 10.16 0.00 32.50 3.06
75 76 7.039784 AGTGTTAAACCACTCAAATATGCATGT 60.040 33.333 10.16 0.00 41.84 3.21
76 77 7.315142 AGTGTTAAACCACTCAAATATGCATG 58.685 34.615 10.16 0.00 41.84 4.06
77 78 7.466746 AGTGTTAAACCACTCAAATATGCAT 57.533 32.000 3.79 3.79 41.84 3.96
78 79 6.892658 AGTGTTAAACCACTCAAATATGCA 57.107 33.333 0.00 0.00 41.84 3.96
79 80 9.503427 GATTAGTGTTAAACCACTCAAATATGC 57.497 33.333 2.23 0.00 44.36 3.14
83 84 9.077885 ACATGATTAGTGTTAAACCACTCAAAT 57.922 29.630 0.00 0.00 44.36 2.32
84 85 8.458573 ACATGATTAGTGTTAAACCACTCAAA 57.541 30.769 0.00 0.00 44.36 2.69
85 86 7.174253 GGACATGATTAGTGTTAAACCACTCAA 59.826 37.037 0.00 0.00 44.36 3.02
86 87 6.653320 GGACATGATTAGTGTTAAACCACTCA 59.347 38.462 0.00 0.00 44.36 3.41
87 88 6.653320 TGGACATGATTAGTGTTAAACCACTC 59.347 38.462 0.00 0.00 44.36 3.51
88 89 6.539173 TGGACATGATTAGTGTTAAACCACT 58.461 36.000 0.00 4.36 46.94 4.00
89 90 6.811253 TGGACATGATTAGTGTTAAACCAC 57.189 37.500 0.00 0.00 35.53 4.16
90 91 7.825331 TTTGGACATGATTAGTGTTAAACCA 57.175 32.000 0.00 0.00 0.00 3.67
96 97 9.920946 AGGTATATTTTGGACATGATTAGTGTT 57.079 29.630 0.00 0.00 0.00 3.32
279 281 7.504926 TCCTAACCATGTCCTACATTAACTT 57.495 36.000 0.00 0.00 36.53 2.66
291 293 4.827284 CCCAAACCATATCCTAACCATGTC 59.173 45.833 0.00 0.00 0.00 3.06
304 306 2.719705 AGTCCCTTCAACCCAAACCATA 59.280 45.455 0.00 0.00 0.00 2.74
348 350 9.590451 TCGTACAAAATCCCTACTATTAAACTG 57.410 33.333 0.00 0.00 0.00 3.16
372 374 5.106157 GCCTACCCATAATCCAATCAAATCG 60.106 44.000 0.00 0.00 0.00 3.34
382 384 1.610886 GCTTCGGCCTACCCATAATCC 60.611 57.143 0.00 0.00 34.32 3.01
396 398 8.718734 AGTAAATCTAAACTTACTTTGCTTCGG 58.281 33.333 0.00 0.00 35.32 4.30
437 439 5.104982 ACACACACCCAAATCAAATCAAACT 60.105 36.000 0.00 0.00 0.00 2.66
472 474 5.277825 CGCAACAAAATCACACCTTTTCTA 58.722 37.500 0.00 0.00 0.00 2.10
494 496 9.379811 CAATCAAATCAAATTTTACCAAAACCG 57.620 29.630 0.00 0.00 32.37 4.44
529 531 1.549620 TCCGCCCAAAATCACGTACTA 59.450 47.619 0.00 0.00 0.00 1.82
655 670 7.918562 CCATACCCAAATTAAATCTTACCAACG 59.081 37.037 0.00 0.00 0.00 4.10
698 717 9.833917 TCGAAACCCTAACCAAATTTAAATTTT 57.166 25.926 20.92 11.36 36.52 1.82
754 773 4.492646 ACTTTTGTCCCTCCATCCAAAAT 58.507 39.130 0.00 0.00 36.52 1.82
838 873 9.927668 GCTGCTAAATCTCTATCTTTATCTTCT 57.072 33.333 0.00 0.00 0.00 2.85
894 929 7.747809 AGAGACAAAGAAGAAATCTAGGGAT 57.252 36.000 0.00 0.00 37.42 3.85
898 933 8.442384 GCTCAAAGAGACAAAGAAGAAATCTAG 58.558 37.037 0.00 0.00 37.42 2.43
918 953 3.373226 AGCCGTACGGAGCTCAAA 58.627 55.556 37.62 0.00 32.71 2.69
950 987 3.181510 GCGTTTGGCTCACTGGTTATTAG 60.182 47.826 0.00 0.00 39.11 1.73
956 993 2.594592 GGCGTTTGGCTCACTGGT 60.595 61.111 0.00 0.00 42.94 4.00
957 994 3.365265 GGGCGTTTGGCTCACTGG 61.365 66.667 0.00 0.00 43.67 4.00
963 1000 2.221299 TGGAGTAGGGCGTTTGGCT 61.221 57.895 0.00 0.00 42.94 4.75
973 1022 0.836400 AGGTGGTGTGGTGGAGTAGG 60.836 60.000 0.00 0.00 0.00 3.18
981 1030 0.470766 TTTCGCTAAGGTGGTGTGGT 59.529 50.000 0.00 0.00 0.00 4.16
982 1031 1.468520 CATTTCGCTAAGGTGGTGTGG 59.531 52.381 0.00 0.00 0.00 4.17
990 1039 2.186826 CCGGGCCATTTCGCTAAGG 61.187 63.158 4.39 0.00 0.00 2.69
1088 1137 3.263261 GGAGAGTCGGATCTGTTTTTCC 58.737 50.000 0.42 2.17 0.00 3.13
1464 1572 5.391950 GCCTGAATTCGCAGAGAAATTTACA 60.392 40.000 0.04 0.00 42.91 2.41
1498 1606 2.762535 TTACAGGTCAAGGTAGCAGC 57.237 50.000 0.00 0.00 0.00 5.25
1515 1627 3.112263 ACCTGCCTGCTACCTACATTTA 58.888 45.455 0.00 0.00 0.00 1.40
1683 1829 3.383761 CCACCAGAAGAACAAACAATGC 58.616 45.455 0.00 0.00 0.00 3.56
1696 1842 0.918983 GATCACCCATCCCACCAGAA 59.081 55.000 0.00 0.00 0.00 3.02
1698 1844 0.625316 TTGATCACCCATCCCACCAG 59.375 55.000 0.00 0.00 0.00 4.00
1700 1846 1.272425 TGTTTGATCACCCATCCCACC 60.272 52.381 0.00 0.00 0.00 4.61
1702 1848 1.005805 CCTGTTTGATCACCCATCCCA 59.994 52.381 0.00 0.00 0.00 4.37
1706 1852 0.706433 AGCCCTGTTTGATCACCCAT 59.294 50.000 0.00 0.00 0.00 4.00
1707 1853 0.482446 AAGCCCTGTTTGATCACCCA 59.518 50.000 0.00 0.00 0.00 4.51
1708 1854 1.273327 CAAAGCCCTGTTTGATCACCC 59.727 52.381 0.00 0.00 39.40 4.61
1709 1855 1.963515 ACAAAGCCCTGTTTGATCACC 59.036 47.619 0.00 0.00 39.40 4.02
1710 1856 3.568007 TGTACAAAGCCCTGTTTGATCAC 59.432 43.478 0.00 0.00 39.40 3.06
1992 2478 2.766263 GGCTTTCCCCCTTTCCATTAAG 59.234 50.000 0.00 0.00 0.00 1.85
2313 2905 0.386476 CCAGGTACGCGCCATTAGTA 59.614 55.000 5.73 0.00 0.00 1.82
2592 3289 4.329545 GCCCACTTCTCCACGGCA 62.330 66.667 0.00 0.00 39.50 5.69
2928 3625 2.668632 GTGATCCCCTGCACGGAA 59.331 61.111 2.94 0.00 31.75 4.30
3052 5564 8.228464 TCGACATAATGCACACGTTTTTATTTA 58.772 29.630 0.00 0.00 0.00 1.40
3063 5575 7.005062 ACTTCTTTATCGACATAATGCACAC 57.995 36.000 0.00 0.00 0.00 3.82
3100 5692 5.337578 AGTTTTGGTAAGCAACAACACAT 57.662 34.783 0.00 0.00 31.55 3.21
3102 5694 5.407502 AGAAGTTTTGGTAAGCAACAACAC 58.592 37.500 0.00 0.00 0.00 3.32
3145 5737 4.675190 TTCGAGAAAGAACGACGTCTAT 57.325 40.909 14.70 1.33 38.24 1.98
3210 5802 7.556844 TCCTTTACATTTGGATCTACAGACTC 58.443 38.462 0.00 0.00 0.00 3.36
3235 5827 6.289064 ACACAACTCTTTAATTCCGAGTCTT 58.711 36.000 5.12 0.00 37.04 3.01
3236 5828 5.855045 ACACAACTCTTTAATTCCGAGTCT 58.145 37.500 5.12 0.00 37.04 3.24
3253 5845 9.780186 AGGAGGCTAATATTATTCTTACACAAC 57.220 33.333 0.00 0.00 0.00 3.32
3254 5846 9.778741 CAGGAGGCTAATATTATTCTTACACAA 57.221 33.333 0.00 0.00 0.00 3.33
3257 5849 8.506196 ACCAGGAGGCTAATATTATTCTTACA 57.494 34.615 0.00 0.00 39.06 2.41
3263 5855 9.533831 CCATTTAACCAGGAGGCTAATATTATT 57.466 33.333 0.00 0.00 39.06 1.40
3265 5857 7.942341 CACCATTTAACCAGGAGGCTAATATTA 59.058 37.037 0.00 0.00 39.06 0.98
3273 5865 1.272480 ACCACCATTTAACCAGGAGGC 60.272 52.381 0.00 0.00 36.74 4.70
3280 5872 4.342665 TCAAGTTTCCACCACCATTTAACC 59.657 41.667 0.00 0.00 0.00 2.85
3289 5881 3.149005 TGGGTATCAAGTTTCCACCAC 57.851 47.619 0.00 0.00 0.00 4.16
3306 5898 1.753073 CTTGCCAAAGCCTATCTTGGG 59.247 52.381 3.21 0.00 46.81 4.12
3308 5900 6.645790 AATATCTTGCCAAAGCCTATCTTG 57.354 37.500 0.00 0.00 38.69 3.02
3314 5906 6.432472 GCTCTTATAATATCTTGCCAAAGCCT 59.568 38.462 0.00 0.00 38.69 4.58
3334 5926 9.846248 GTGTCATGTTTCAAATATTTAGCTCTT 57.154 29.630 0.00 0.00 0.00 2.85
3335 5927 9.236006 AGTGTCATGTTTCAAATATTTAGCTCT 57.764 29.630 0.00 0.00 0.00 4.09
3336 5928 9.282247 CAGTGTCATGTTTCAAATATTTAGCTC 57.718 33.333 0.00 0.00 0.00 4.09
3337 5929 8.796475 ACAGTGTCATGTTTCAAATATTTAGCT 58.204 29.630 0.00 0.00 0.00 3.32
3338 5930 8.853345 CACAGTGTCATGTTTCAAATATTTAGC 58.147 33.333 0.00 0.00 0.00 3.09
3339 5931 9.345517 CCACAGTGTCATGTTTCAAATATTTAG 57.654 33.333 0.00 0.00 0.00 1.85
3340 5932 7.812191 GCCACAGTGTCATGTTTCAAATATTTA 59.188 33.333 0.00 0.00 0.00 1.40
3341 5933 6.646240 GCCACAGTGTCATGTTTCAAATATTT 59.354 34.615 0.00 0.00 0.00 1.40
3342 5934 6.158598 GCCACAGTGTCATGTTTCAAATATT 58.841 36.000 0.00 0.00 0.00 1.28
3343 5935 5.336690 GGCCACAGTGTCATGTTTCAAATAT 60.337 40.000 0.00 0.00 0.00 1.28
3344 5936 4.022416 GGCCACAGTGTCATGTTTCAAATA 60.022 41.667 0.00 0.00 0.00 1.40
3345 5937 3.243839 GGCCACAGTGTCATGTTTCAAAT 60.244 43.478 0.00 0.00 0.00 2.32
3346 5938 2.100584 GGCCACAGTGTCATGTTTCAAA 59.899 45.455 0.00 0.00 0.00 2.69
3347 5939 1.680735 GGCCACAGTGTCATGTTTCAA 59.319 47.619 0.00 0.00 0.00 2.69
3348 5940 1.317613 GGCCACAGTGTCATGTTTCA 58.682 50.000 0.00 0.00 0.00 2.69
3349 5941 1.001378 GTGGCCACAGTGTCATGTTTC 60.001 52.381 31.23 0.00 0.00 2.78
3350 5942 1.032014 GTGGCCACAGTGTCATGTTT 58.968 50.000 31.23 0.00 0.00 2.83
3351 5943 0.183492 AGTGGCCACAGTGTCATGTT 59.817 50.000 36.39 10.00 0.00 2.71
3352 5944 0.535780 CAGTGGCCACAGTGTCATGT 60.536 55.000 36.39 10.81 41.99 3.21
3353 5945 2.250646 CAGTGGCCACAGTGTCATG 58.749 57.895 36.39 20.45 41.99 3.07
3354 5946 4.806936 CAGTGGCCACAGTGTCAT 57.193 55.556 36.39 12.43 41.99 3.06
3359 5951 0.466189 CCTTTGACAGTGGCCACAGT 60.466 55.000 36.39 34.02 33.59 3.55
3360 5952 0.179020 TCCTTTGACAGTGGCCACAG 60.179 55.000 36.39 30.89 0.00 3.66
3361 5953 0.257328 TTCCTTTGACAGTGGCCACA 59.743 50.000 36.39 14.54 0.00 4.17
3362 5954 1.398692 TTTCCTTTGACAGTGGCCAC 58.601 50.000 29.22 29.22 0.00 5.01
3363 5955 2.151502 TTTTCCTTTGACAGTGGCCA 57.848 45.000 0.00 0.00 0.00 5.36
3364 5956 3.321968 AGAATTTTCCTTTGACAGTGGCC 59.678 43.478 0.00 0.00 0.00 5.36
3365 5957 4.590850 AGAATTTTCCTTTGACAGTGGC 57.409 40.909 0.00 0.00 0.00 5.01
3374 5966 9.593565 AATAGGAGAGTCAAAGAATTTTCCTTT 57.406 29.630 6.73 0.00 35.03 3.11
3375 5967 9.593565 AAATAGGAGAGTCAAAGAATTTTCCTT 57.406 29.630 6.73 0.00 35.03 3.36
3376 5968 9.018582 CAAATAGGAGAGTCAAAGAATTTTCCT 57.981 33.333 0.00 0.00 35.03 3.36
3377 5969 8.246871 CCAAATAGGAGAGTCAAAGAATTTTCC 58.753 37.037 0.00 0.00 41.22 3.13
3378 5970 9.014297 TCCAAATAGGAGAGTCAAAGAATTTTC 57.986 33.333 0.00 0.00 43.07 2.29
3379 5971 8.940397 TCCAAATAGGAGAGTCAAAGAATTTT 57.060 30.769 0.00 0.00 43.07 1.82
3395 5987 4.371624 TCATAGTGGCCATCCAAATAGG 57.628 45.455 9.72 0.00 45.53 2.57
3396 5988 4.763793 CCTTCATAGTGGCCATCCAAATAG 59.236 45.833 9.72 1.52 45.53 1.73
3397 5989 4.167892 ACCTTCATAGTGGCCATCCAAATA 59.832 41.667 9.72 0.00 45.53 1.40
3398 5990 3.052642 ACCTTCATAGTGGCCATCCAAAT 60.053 43.478 9.72 0.00 45.53 2.32
3399 5991 2.311542 ACCTTCATAGTGGCCATCCAAA 59.688 45.455 9.72 0.00 45.53 3.28
3400 5992 1.922447 ACCTTCATAGTGGCCATCCAA 59.078 47.619 9.72 0.00 45.53 3.53
3401 5993 1.595311 ACCTTCATAGTGGCCATCCA 58.405 50.000 9.72 0.00 40.85 3.41
3402 5994 2.736670 AACCTTCATAGTGGCCATCC 57.263 50.000 9.72 0.00 0.00 3.51
3403 5995 5.437060 TCTTTAACCTTCATAGTGGCCATC 58.563 41.667 9.72 2.38 0.00 3.51
3404 5996 5.044846 ACTCTTTAACCTTCATAGTGGCCAT 60.045 40.000 9.72 0.00 0.00 4.40
3405 5997 4.288626 ACTCTTTAACCTTCATAGTGGCCA 59.711 41.667 0.00 0.00 0.00 5.36
3406 5998 4.844884 ACTCTTTAACCTTCATAGTGGCC 58.155 43.478 0.00 0.00 0.00 5.36
3407 5999 6.641474 AGTACTCTTTAACCTTCATAGTGGC 58.359 40.000 0.00 0.00 0.00 5.01
3408 6000 7.266400 GGAGTACTCTTTAACCTTCATAGTGG 58.734 42.308 21.88 0.00 0.00 4.00
3409 6001 7.124448 AGGGAGTACTCTTTAACCTTCATAGTG 59.876 40.741 21.88 0.00 0.00 2.74
3410 6002 7.190501 AGGGAGTACTCTTTAACCTTCATAGT 58.809 38.462 21.88 0.00 0.00 2.12
3411 6003 7.201929 GGAGGGAGTACTCTTTAACCTTCATAG 60.202 44.444 21.88 0.00 37.63 2.23
3412 6004 6.610425 GGAGGGAGTACTCTTTAACCTTCATA 59.390 42.308 21.88 0.00 37.63 2.15
3413 6005 5.425862 GGAGGGAGTACTCTTTAACCTTCAT 59.574 44.000 21.88 0.00 37.63 2.57
3414 6006 4.776308 GGAGGGAGTACTCTTTAACCTTCA 59.224 45.833 21.88 0.00 37.63 3.02
3415 6007 4.142204 CGGAGGGAGTACTCTTTAACCTTC 60.142 50.000 21.88 16.09 37.63 3.46
3416 6008 3.768215 CGGAGGGAGTACTCTTTAACCTT 59.232 47.826 21.88 1.47 37.63 3.50
3417 6009 3.245550 ACGGAGGGAGTACTCTTTAACCT 60.246 47.826 21.88 18.26 37.63 3.50
3418 6010 3.095332 ACGGAGGGAGTACTCTTTAACC 58.905 50.000 21.88 13.96 37.63 2.85
3419 6011 3.130164 GGACGGAGGGAGTACTCTTTAAC 59.870 52.174 21.88 5.25 37.63 2.01
3420 6012 3.359950 GGACGGAGGGAGTACTCTTTAA 58.640 50.000 21.88 0.00 37.63 1.52
3421 6013 2.681976 CGGACGGAGGGAGTACTCTTTA 60.682 54.545 21.88 0.00 37.63 1.85
3422 6014 1.849977 GGACGGAGGGAGTACTCTTT 58.150 55.000 21.88 10.70 37.63 2.52
3423 6015 0.394080 CGGACGGAGGGAGTACTCTT 60.394 60.000 21.88 11.06 37.63 2.85
3424 6016 1.224039 CGGACGGAGGGAGTACTCT 59.776 63.158 21.88 3.41 37.63 3.24
3425 6017 0.814812 CTCGGACGGAGGGAGTACTC 60.815 65.000 14.87 14.87 39.22 2.59
3426 6018 1.224039 CTCGGACGGAGGGAGTACT 59.776 63.158 0.00 0.00 39.22 2.73
3427 6019 3.824810 CTCGGACGGAGGGAGTAC 58.175 66.667 2.13 0.00 39.22 2.73
3435 6027 3.181497 CGGACTTAATAAACTCGGACGGA 60.181 47.826 0.00 0.00 0.00 4.69
3443 6035 4.161754 CCCTCCTCACGGACTTAATAAACT 59.838 45.833 0.00 0.00 34.92 2.66
3451 6043 0.323908 CTCTCCCTCCTCACGGACTT 60.324 60.000 0.00 0.00 34.92 3.01
3452 6044 1.304952 CTCTCCCTCCTCACGGACT 59.695 63.158 0.00 0.00 34.92 3.85
3454 6046 0.612174 CAACTCTCCCTCCTCACGGA 60.612 60.000 0.00 0.00 37.82 4.69
3464 6056 6.688938 CCTAATAGGAAGGGACAACTCTCCC 61.689 52.000 0.00 0.00 43.75 4.30
3465 6057 4.345547 CCTAATAGGAAGGGACAACTCTCC 59.654 50.000 0.00 0.00 37.67 3.71
3467 6059 3.712218 GCCTAATAGGAAGGGACAACTCT 59.288 47.826 11.13 0.00 37.67 3.24
3468 6060 3.181453 GGCCTAATAGGAAGGGACAACTC 60.181 52.174 11.13 0.00 37.67 3.01
3469 6061 2.778270 GGCCTAATAGGAAGGGACAACT 59.222 50.000 11.13 0.00 37.67 3.16
3470 6062 2.158652 GGGCCTAATAGGAAGGGACAAC 60.159 54.545 11.13 0.00 37.67 3.32
3471 6063 2.132686 GGGCCTAATAGGAAGGGACAA 58.867 52.381 11.13 0.00 37.67 3.18
3472 6064 1.297141 AGGGCCTAATAGGAAGGGACA 59.703 52.381 11.13 0.00 37.67 4.02
3476 6069 3.049344 ACTGAAGGGCCTAATAGGAAGG 58.951 50.000 6.41 0.00 37.67 3.46
3483 6076 0.831307 GTCGGACTGAAGGGCCTAAT 59.169 55.000 6.41 0.00 42.26 1.73
3495 6088 8.512138 CATTTAATTTTTCTTGGTAGTCGGACT 58.488 33.333 15.95 15.95 0.00 3.85
3510 6103 8.404000 TGCATGCACTGTTTTCATTTAATTTTT 58.596 25.926 18.46 0.00 0.00 1.94
3519 6112 2.409975 GCTTGCATGCACTGTTTTCAT 58.590 42.857 22.58 0.00 0.00 2.57
3522 6115 0.385029 TCGCTTGCATGCACTGTTTT 59.615 45.000 22.58 0.00 0.00 2.43
3526 6119 0.450583 AATCTCGCTTGCATGCACTG 59.549 50.000 22.58 17.25 0.00 3.66
3537 6130 1.202313 GCCTGACTCGTTAATCTCGCT 60.202 52.381 0.00 0.00 0.00 4.93
3543 6136 2.698855 ATGCTGCCTGACTCGTTAAT 57.301 45.000 0.00 0.00 0.00 1.40
3548 6141 2.229675 TGATAATGCTGCCTGACTCG 57.770 50.000 0.00 0.00 0.00 4.18
3550 6143 2.240667 ACCTTGATAATGCTGCCTGACT 59.759 45.455 0.00 0.00 0.00 3.41
3551 6144 2.357009 CACCTTGATAATGCTGCCTGAC 59.643 50.000 0.00 0.00 0.00 3.51
3553 6146 2.646930 TCACCTTGATAATGCTGCCTG 58.353 47.619 0.00 0.00 0.00 4.85
3554 6147 3.589951 ATCACCTTGATAATGCTGCCT 57.410 42.857 0.00 0.00 34.88 4.75
3593 6186 3.002042 CGAAGCGAAATCTTCATGCATCT 59.998 43.478 0.00 0.00 41.84 2.90
3594 6187 3.001634 TCGAAGCGAAATCTTCATGCATC 59.998 43.478 0.00 0.00 41.84 3.91
3602 6195 2.744202 ACTGCAATCGAAGCGAAATCTT 59.256 40.909 8.43 0.00 39.99 2.40
3619 6212 0.460987 AGACTAGCGGATGCAACTGC 60.461 55.000 19.35 19.35 46.23 4.40
3620 6213 1.565305 GAGACTAGCGGATGCAACTG 58.435 55.000 0.00 0.00 46.23 3.16
3621 6214 0.101399 CGAGACTAGCGGATGCAACT 59.899 55.000 0.00 0.00 46.23 3.16
3622 6215 1.483424 GCGAGACTAGCGGATGCAAC 61.483 60.000 0.00 0.00 46.23 4.17
3623 6216 1.226974 GCGAGACTAGCGGATGCAA 60.227 57.895 0.00 0.00 46.23 4.08
3624 6217 2.413351 GCGAGACTAGCGGATGCA 59.587 61.111 0.00 0.00 46.23 3.96
3661 6539 0.551131 ACTTTCCCTCTGGAGCCCAT 60.551 55.000 0.00 0.00 43.07 4.00
3663 6541 1.604915 GACTTTCCCTCTGGAGCCC 59.395 63.158 0.00 0.00 43.07 5.19
3671 6549 1.648467 GGCATGCACGACTTTCCCTC 61.648 60.000 21.36 0.00 0.00 4.30
3698 6576 0.738975 CCACAATCCTGCATGCTCTG 59.261 55.000 20.33 10.80 0.00 3.35
3732 6610 4.213906 TCATATGGCATGTCATTTACAGCG 59.786 41.667 19.60 0.00 42.70 5.18
3735 6613 5.593502 TGCTTCATATGGCATGTCATTTACA 59.406 36.000 19.60 0.00 43.86 2.41
3753 6631 5.109210 CACGAGTAATAACCTGATGCTTCA 58.891 41.667 1.92 1.92 0.00 3.02
3766 6644 5.818678 AAGGCATTATCCCACGAGTAATA 57.181 39.130 0.00 0.00 0.00 0.98
3768 6646 5.617528 TTAAGGCATTATCCCACGAGTAA 57.382 39.130 0.00 0.00 0.00 2.24
3775 6653 5.009210 GCACGTTAATTAAGGCATTATCCCA 59.991 40.000 15.94 0.00 0.00 4.37
3780 6658 4.630505 TCGTGCACGTTAATTAAGGCATTA 59.369 37.500 35.74 10.49 40.80 1.90
3788 6666 5.289193 GTGTCCTATTCGTGCACGTTAATTA 59.711 40.000 35.74 15.49 40.80 1.40
3796 6674 0.721718 GCAGTGTCCTATTCGTGCAC 59.278 55.000 6.82 6.82 0.00 4.57
3799 6677 2.002586 CAAGGCAGTGTCCTATTCGTG 58.997 52.381 6.55 0.00 34.82 4.35
3800 6678 1.066143 CCAAGGCAGTGTCCTATTCGT 60.066 52.381 6.55 0.00 34.82 3.85
3821 6699 1.153168 ATCGACCGGATTGGCAAGG 60.153 57.895 9.46 4.11 43.94 3.61
3828 6706 1.052124 TTAGGCCCATCGACCGGATT 61.052 55.000 9.46 0.00 31.28 3.01
3833 6711 2.105993 AGGTTTATTAGGCCCATCGACC 59.894 50.000 0.00 0.84 0.00 4.79
3837 6715 3.564225 CGTTCAGGTTTATTAGGCCCATC 59.436 47.826 0.00 0.00 0.00 3.51
3839 6717 2.356330 CCGTTCAGGTTTATTAGGCCCA 60.356 50.000 0.00 0.00 34.51 5.36
3854 6732 7.201848 CCAACAATATAGTACTACCTCCGTTCA 60.202 40.741 4.31 0.00 0.00 3.18
3864 6742 9.719433 AACTTCCCTACCAACAATATAGTACTA 57.281 33.333 4.77 4.77 0.00 1.82
3869 6747 8.925338 AGAGTAACTTCCCTACCAACAATATAG 58.075 37.037 0.00 0.00 0.00 1.31
3870 6748 8.849543 AGAGTAACTTCCCTACCAACAATATA 57.150 34.615 0.00 0.00 0.00 0.86
3871 6749 7.750947 AGAGTAACTTCCCTACCAACAATAT 57.249 36.000 0.00 0.00 0.00 1.28
3872 6750 7.563724 AAGAGTAACTTCCCTACCAACAATA 57.436 36.000 0.00 0.00 32.91 1.90
3873 6751 6.449830 AAGAGTAACTTCCCTACCAACAAT 57.550 37.500 0.00 0.00 32.91 2.71
3874 6752 5.899631 AAGAGTAACTTCCCTACCAACAA 57.100 39.130 0.00 0.00 32.91 2.83
3875 6753 6.999705 TTAAGAGTAACTTCCCTACCAACA 57.000 37.500 0.00 0.00 39.72 3.33
3876 6754 8.859236 AAATTAAGAGTAACTTCCCTACCAAC 57.141 34.615 0.00 0.00 39.72 3.77
3877 6755 9.292195 CAAAATTAAGAGTAACTTCCCTACCAA 57.708 33.333 0.00 0.00 39.72 3.67
3878 6756 7.886446 CCAAAATTAAGAGTAACTTCCCTACCA 59.114 37.037 0.00 0.00 39.72 3.25
3879 6757 7.338703 CCCAAAATTAAGAGTAACTTCCCTACC 59.661 40.741 0.00 0.00 39.72 3.18
3880 6758 7.338703 CCCCAAAATTAAGAGTAACTTCCCTAC 59.661 40.741 0.00 0.00 39.72 3.18
3881 6759 7.240194 TCCCCAAAATTAAGAGTAACTTCCCTA 59.760 37.037 0.00 0.00 39.72 3.53
3882 6760 6.046286 TCCCCAAAATTAAGAGTAACTTCCCT 59.954 38.462 0.00 0.00 39.72 4.20
3883 6761 6.250711 TCCCCAAAATTAAGAGTAACTTCCC 58.749 40.000 0.00 0.00 39.72 3.97
3884 6762 7.396339 ACATCCCCAAAATTAAGAGTAACTTCC 59.604 37.037 0.00 0.00 39.72 3.46
3885 6763 8.244113 CACATCCCCAAAATTAAGAGTAACTTC 58.756 37.037 0.00 0.00 39.72 3.01
3886 6764 7.178451 CCACATCCCCAAAATTAAGAGTAACTT 59.822 37.037 0.00 0.00 42.04 2.66
3887 6765 6.663523 CCACATCCCCAAAATTAAGAGTAACT 59.336 38.462 0.00 0.00 0.00 2.24
3888 6766 6.627287 GCCACATCCCCAAAATTAAGAGTAAC 60.627 42.308 0.00 0.00 0.00 2.50
3889 6767 5.420739 GCCACATCCCCAAAATTAAGAGTAA 59.579 40.000 0.00 0.00 0.00 2.24
3890 6768 4.953579 GCCACATCCCCAAAATTAAGAGTA 59.046 41.667 0.00 0.00 0.00 2.59
3891 6769 3.769300 GCCACATCCCCAAAATTAAGAGT 59.231 43.478 0.00 0.00 0.00 3.24
3892 6770 3.132824 GGCCACATCCCCAAAATTAAGAG 59.867 47.826 0.00 0.00 0.00 2.85
3893 6771 3.103742 GGCCACATCCCCAAAATTAAGA 58.896 45.455 0.00 0.00 0.00 2.10
3894 6772 2.836981 TGGCCACATCCCCAAAATTAAG 59.163 45.455 0.00 0.00 0.00 1.85
3895 6773 2.836981 CTGGCCACATCCCCAAAATTAA 59.163 45.455 0.00 0.00 0.00 1.40
3896 6774 2.465813 CTGGCCACATCCCCAAAATTA 58.534 47.619 0.00 0.00 0.00 1.40
3897 6775 1.278537 CTGGCCACATCCCCAAAATT 58.721 50.000 0.00 0.00 0.00 1.82
3898 6776 0.618393 CCTGGCCACATCCCCAAAAT 60.618 55.000 0.00 0.00 0.00 1.82
3899 6777 1.229145 CCTGGCCACATCCCCAAAA 60.229 57.895 0.00 0.00 0.00 2.44
3900 6778 2.444696 CCTGGCCACATCCCCAAA 59.555 61.111 0.00 0.00 0.00 3.28
3901 6779 4.380945 GCCTGGCCACATCCCCAA 62.381 66.667 7.66 0.00 0.00 4.12
3903 6781 3.607084 AAAGCCTGGCCACATCCCC 62.607 63.158 16.57 0.00 0.00 4.81
3904 6782 2.037847 AAAGCCTGGCCACATCCC 59.962 61.111 16.57 0.00 0.00 3.85
3905 6783 2.353610 CCAAAGCCTGGCCACATCC 61.354 63.158 16.57 0.00 38.76 3.51
3906 6784 3.291611 CCAAAGCCTGGCCACATC 58.708 61.111 16.57 0.00 38.76 3.06
3914 6792 1.228675 AGGGTCAAGCCAAAGCCTG 60.229 57.895 0.44 0.00 41.69 4.85
3915 6793 1.075659 GAGGGTCAAGCCAAAGCCT 59.924 57.895 0.44 0.59 45.78 4.58
3916 6794 0.540597 AAGAGGGTCAAGCCAAAGCC 60.541 55.000 0.44 0.00 41.25 4.35
3917 6795 2.087646 CTAAGAGGGTCAAGCCAAAGC 58.912 52.381 0.44 0.00 39.65 3.51
3918 6796 2.716217 CCTAAGAGGGTCAAGCCAAAG 58.284 52.381 0.44 0.00 39.65 2.77
3919 6797 2.879103 CCTAAGAGGGTCAAGCCAAA 57.121 50.000 0.44 0.00 39.65 3.28
3930 6808 3.298686 GGGTTGATTTCCCCTAAGAGG 57.701 52.381 0.00 0.00 39.08 3.69
3937 6815 4.415846 AGGAGTATAAGGGTTGATTTCCCC 59.584 45.833 0.00 0.00 45.64 4.81
3938 6816 5.648330 AGGAGTATAAGGGTTGATTTCCC 57.352 43.478 0.00 0.00 44.90 3.97
3939 6817 7.376335 ACTAGGAGTATAAGGGTTGATTTCC 57.624 40.000 0.00 0.00 0.00 3.13
3940 6818 9.327628 GAAACTAGGAGTATAAGGGTTGATTTC 57.672 37.037 0.00 0.00 0.00 2.17
3941 6819 8.272889 GGAAACTAGGAGTATAAGGGTTGATTT 58.727 37.037 0.00 0.00 0.00 2.17
3942 6820 7.628101 AGGAAACTAGGAGTATAAGGGTTGATT 59.372 37.037 0.00 0.00 40.61 2.57
3943 6821 7.071321 CAGGAAACTAGGAGTATAAGGGTTGAT 59.929 40.741 0.00 0.00 40.21 2.57
3944 6822 6.383147 CAGGAAACTAGGAGTATAAGGGTTGA 59.617 42.308 0.00 0.00 40.21 3.18
3945 6823 6.383147 TCAGGAAACTAGGAGTATAAGGGTTG 59.617 42.308 0.00 0.00 40.21 3.77
3946 6824 6.509386 TCAGGAAACTAGGAGTATAAGGGTT 58.491 40.000 0.00 0.00 40.21 4.11
3947 6825 6.101274 TCAGGAAACTAGGAGTATAAGGGT 57.899 41.667 0.00 0.00 40.21 4.34
3948 6826 6.612049 AGTTCAGGAAACTAGGAGTATAAGGG 59.388 42.308 0.00 0.00 46.55 3.95
3949 6827 7.663043 AGTTCAGGAAACTAGGAGTATAAGG 57.337 40.000 0.00 0.00 46.55 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.