Multiple sequence alignment - TraesCS7B01G098900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G098900 chr7B 100.000 2528 0 0 1 2528 113446541 113444014 0.000000e+00 4669.0
1 TraesCS7B01G098900 chr7B 76.380 453 72 25 1949 2384 84645457 84645891 7.090000e-51 211.0
2 TraesCS7B01G098900 chr7D 90.287 1081 73 17 617 1694 151542950 151541899 0.000000e+00 1386.0
3 TraesCS7B01G098900 chr7D 87.701 374 26 12 2162 2528 151408502 151408142 3.890000e-113 418.0
4 TraesCS7B01G098900 chr7D 83.188 458 39 10 1722 2159 151527749 151527310 3.940000e-103 385.0
5 TraesCS7B01G098900 chr7D 91.304 276 24 0 3 278 151543382 151543107 6.600000e-101 377.0
6 TraesCS7B01G098900 chr7D 85.366 287 40 2 276 560 91118346 91118632 1.900000e-76 296.0
7 TraesCS7B01G098900 chr7D 77.665 197 29 8 2103 2298 150754246 150754064 3.440000e-19 106.0
8 TraesCS7B01G098900 chr7D 100.000 39 0 0 1699 1737 151527800 151527762 3.490000e-09 73.1
9 TraesCS7B01G098900 chr7A 89.134 1086 88 21 617 1694 151328470 151327407 0.000000e+00 1325.0
10 TraesCS7B01G098900 chr7A 84.964 552 60 16 1986 2528 151324876 151324339 2.860000e-149 538.0
11 TraesCS7B01G098900 chr7A 91.273 275 19 3 1 275 151328785 151328516 1.100000e-98 370.0
12 TraesCS7B01G098900 chr7A 83.793 290 45 2 276 563 239772471 239772760 8.910000e-70 274.0
13 TraesCS7B01G098900 chr5D 84.527 1047 109 35 769 1789 515094533 515093514 0.000000e+00 987.0
14 TraesCS7B01G098900 chr5D 90.086 696 59 8 842 1531 515039821 515039130 0.000000e+00 894.0
15 TraesCS7B01G098900 chr3D 84.116 1001 102 31 942 1903 594958430 594957448 0.000000e+00 915.0
16 TraesCS7B01G098900 chr3D 83.392 283 42 5 281 560 517011438 517011158 8.970000e-65 257.0
17 TraesCS7B01G098900 chr2D 89.444 701 63 9 840 1532 534129238 534129935 0.000000e+00 874.0
18 TraesCS7B01G098900 chr2D 87.149 677 76 9 930 1600 534122862 534123533 0.000000e+00 758.0
19 TraesCS7B01G098900 chr2D 84.375 288 41 4 276 561 33961706 33961991 1.920000e-71 279.0
20 TraesCS7B01G098900 chr2D 83.505 291 40 8 276 560 7411293 7411581 5.360000e-67 265.0
21 TraesCS7B01G098900 chr2D 78.041 296 48 14 2045 2335 579788712 579788995 1.200000e-38 171.0
22 TraesCS7B01G098900 chr5A 89.736 682 53 9 863 1531 643312197 643311520 0.000000e+00 856.0
23 TraesCS7B01G098900 chr5A 74.737 380 70 20 1963 2333 597427733 597428095 2.030000e-31 147.0
24 TraesCS7B01G098900 chr5A 80.488 164 25 4 1975 2135 476443060 476443219 4.420000e-23 119.0
25 TraesCS7B01G098900 chr5A 78.919 185 29 10 1959 2141 616507602 616507426 1.590000e-22 117.0
26 TraesCS7B01G098900 chr5A 86.364 88 6 4 1707 1789 643310852 643310766 9.630000e-15 91.6
27 TraesCS7B01G098900 chr5A 86.364 88 6 4 1707 1789 643311419 643311333 9.630000e-15 91.6
28 TraesCS7B01G098900 chr2B 86.479 710 71 10 842 1532 776645938 776645235 0.000000e+00 756.0
29 TraesCS7B01G098900 chr2B 86.170 282 35 4 278 558 745805533 745805255 4.090000e-78 302.0
30 TraesCS7B01G098900 chr6B 85.217 690 57 24 856 1537 33037869 33038521 0.000000e+00 667.0
31 TraesCS7B01G098900 chr6B 86.486 259 34 1 276 533 125482744 125483002 1.480000e-72 283.0
32 TraesCS7B01G098900 chr6B 79.121 182 27 10 1961 2140 348118614 348118786 5.710000e-22 115.0
33 TraesCS7B01G098900 chr6B 78.000 200 19 15 1953 2149 413494617 413494440 4.450000e-18 102.0
34 TraesCS7B01G098900 chr6B 77.632 152 30 4 2161 2309 688379811 688379961 3.460000e-14 89.8
35 TraesCS7B01G098900 chr1D 86.364 286 37 2 277 560 326787978 326788263 6.790000e-81 311.0
36 TraesCS7B01G098900 chr1D 85.263 285 40 2 276 559 287170556 287170839 2.460000e-75 292.0
37 TraesCS7B01G098900 chr1D 80.311 193 29 6 1951 2139 494447791 494447978 1.220000e-28 137.0
38 TraesCS7B01G098900 chr2A 75.506 445 62 32 1949 2384 531153640 531153234 9.300000e-40 174.0
39 TraesCS7B01G098900 chr2A 79.888 179 27 8 2144 2317 715800620 715800446 3.420000e-24 122.0
40 TraesCS7B01G098900 chr6A 80.000 175 26 8 1960 2131 15788938 15788770 1.230000e-23 121.0
41 TraesCS7B01G098900 chr6A 77.358 159 31 5 2151 2305 94153036 94152879 3.460000e-14 89.8
42 TraesCS7B01G098900 chr3A 72.778 360 74 23 2035 2384 674094504 674094849 1.600000e-17 100.0
43 TraesCS7B01G098900 chr3B 79.470 151 22 8 2161 2305 410108536 410108389 5.760000e-17 99.0
44 TraesCS7B01G098900 chr5B 80.451 133 21 3 1945 2077 573499680 573499807 2.070000e-16 97.1
45 TraesCS7B01G098900 chr4A 77.987 159 27 7 2144 2298 598060629 598060475 2.680000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G098900 chr7B 113444014 113446541 2527 True 4669.000000 4669 100.0000 1 2528 1 chr7B.!!$R1 2527
1 TraesCS7B01G098900 chr7D 151541899 151543382 1483 True 881.500000 1386 90.7955 3 1694 2 chr7D.!!$R4 1691
2 TraesCS7B01G098900 chr7A 151324339 151328785 4446 True 744.333333 1325 88.4570 1 2528 3 chr7A.!!$R1 2527
3 TraesCS7B01G098900 chr5D 515093514 515094533 1019 True 987.000000 987 84.5270 769 1789 1 chr5D.!!$R2 1020
4 TraesCS7B01G098900 chr5D 515039130 515039821 691 True 894.000000 894 90.0860 842 1531 1 chr5D.!!$R1 689
5 TraesCS7B01G098900 chr3D 594957448 594958430 982 True 915.000000 915 84.1160 942 1903 1 chr3D.!!$R2 961
6 TraesCS7B01G098900 chr2D 534129238 534129935 697 False 874.000000 874 89.4440 840 1532 1 chr2D.!!$F4 692
7 TraesCS7B01G098900 chr2D 534122862 534123533 671 False 758.000000 758 87.1490 930 1600 1 chr2D.!!$F3 670
8 TraesCS7B01G098900 chr5A 643310766 643312197 1431 True 346.400000 856 87.4880 863 1789 3 chr5A.!!$R2 926
9 TraesCS7B01G098900 chr2B 776645235 776645938 703 True 756.000000 756 86.4790 842 1532 1 chr2B.!!$R2 690
10 TraesCS7B01G098900 chr6B 33037869 33038521 652 False 667.000000 667 85.2170 856 1537 1 chr6B.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.027716 AGACATTCGGATCGACGACG 59.972 55.0 0.00 0.00 43.37 5.12 F
486 487 0.030369 GCTCGTACGGGTAGGATGTG 59.970 60.0 17.95 0.00 30.73 3.21 F
521 522 0.173481 AGATGTGAGTGTATGCGCGT 59.827 50.0 8.43 7.55 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1474 0.250234 CAGCCAGGATGAGGTCGAAA 59.750 55.000 0.0 0.0 39.69 3.46 R
1479 1621 1.152652 GATCTCCGCCTCCTCCTCA 60.153 63.158 0.0 0.0 0.00 3.86 R
2506 5583 0.729116 CCTATGTCACGCTTGCCAAG 59.271 55.000 0.0 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.080356 TGTGACTAATAGGCCTTTCAGCAT 60.080 41.667 12.58 0.00 0.00 3.79
60 61 1.481772 GGCCTTTCAGCATGCCAATTA 59.518 47.619 15.66 0.00 43.46 1.40
78 79 6.708949 GCCAATTAATCTGGATTAACCGACTA 59.291 38.462 15.26 0.00 43.54 2.59
92 93 3.300388 ACCGACTATGTCTCCATCATGT 58.700 45.455 0.00 0.00 32.29 3.21
97 98 4.237843 ACTATGTCTCCATCATGTCCCAT 58.762 43.478 0.00 0.00 32.29 4.00
98 99 3.503800 ATGTCTCCATCATGTCCCATG 57.496 47.619 0.00 0.00 0.00 3.66
109 110 2.252535 TGTCCCATGACAGGATCTCA 57.747 50.000 0.00 0.00 46.40 3.27
115 116 0.179000 ATGACAGGATCTCAACCGGC 59.821 55.000 0.00 0.00 0.00 6.13
147 148 1.001597 GTCGATAATCGGGAGTCGCTT 60.002 52.381 5.58 0.00 40.88 4.68
188 189 0.533755 CCACCTGGATCGCCTCATTC 60.534 60.000 0.00 0.00 37.39 2.67
190 191 1.688735 CACCTGGATCGCCTCATTCTA 59.311 52.381 0.00 0.00 34.31 2.10
191 192 2.301296 CACCTGGATCGCCTCATTCTAT 59.699 50.000 0.00 0.00 34.31 1.98
223 224 2.821546 TGTGTAGCGGTGAGATTATGC 58.178 47.619 0.00 0.00 0.00 3.14
240 241 2.534903 GCCAGCCGGTATTTCTCGC 61.535 63.158 1.90 0.00 33.28 5.03
249 250 2.097396 CGGTATTTCTCGCTATTGCACG 60.097 50.000 0.00 0.00 39.64 5.34
275 276 6.473455 GCAGCATACACATTTTAATCCAGTTC 59.527 38.462 0.00 0.00 0.00 3.01
278 279 7.178274 AGCATACACATTTTAATCCAGTTCCAA 59.822 33.333 0.00 0.00 0.00 3.53
279 280 7.981225 GCATACACATTTTAATCCAGTTCCAAT 59.019 33.333 0.00 0.00 0.00 3.16
281 282 7.781324 ACACATTTTAATCCAGTTCCAATCT 57.219 32.000 0.00 0.00 0.00 2.40
283 284 7.233348 ACACATTTTAATCCAGTTCCAATCTGT 59.767 33.333 0.00 0.00 0.00 3.41
285 286 7.451255 ACATTTTAATCCAGTTCCAATCTGTGA 59.549 33.333 0.00 0.00 0.00 3.58
286 287 8.472413 CATTTTAATCCAGTTCCAATCTGTGAT 58.528 33.333 0.00 0.00 0.00 3.06
287 288 8.421249 TTTTAATCCAGTTCCAATCTGTGATT 57.579 30.769 0.00 0.00 37.05 2.57
288 289 5.909621 AATCCAGTTCCAATCTGTGATTG 57.090 39.130 11.95 11.95 34.67 2.67
299 300 6.615264 CAATCTGTGATTGGATGGTTAGAG 57.385 41.667 11.27 0.00 0.00 2.43
300 301 4.760530 TCTGTGATTGGATGGTTAGAGG 57.239 45.455 0.00 0.00 0.00 3.69
301 302 3.455910 TCTGTGATTGGATGGTTAGAGGG 59.544 47.826 0.00 0.00 0.00 4.30
302 303 3.455910 CTGTGATTGGATGGTTAGAGGGA 59.544 47.826 0.00 0.00 0.00 4.20
303 304 3.199946 TGTGATTGGATGGTTAGAGGGAC 59.800 47.826 0.00 0.00 0.00 4.46
305 306 3.455910 TGATTGGATGGTTAGAGGGACTG 59.544 47.826 0.00 0.00 41.55 3.51
306 307 1.204146 TGGATGGTTAGAGGGACTGC 58.796 55.000 0.00 0.00 41.55 4.40
307 308 0.105039 GGATGGTTAGAGGGACTGCG 59.895 60.000 0.00 0.00 41.55 5.18
308 309 0.105039 GATGGTTAGAGGGACTGCGG 59.895 60.000 0.00 0.00 41.55 5.69
309 310 0.617820 ATGGTTAGAGGGACTGCGGT 60.618 55.000 0.00 0.00 41.55 5.68
310 311 0.040058 TGGTTAGAGGGACTGCGGTA 59.960 55.000 0.00 0.00 41.55 4.02
311 312 1.342674 TGGTTAGAGGGACTGCGGTAT 60.343 52.381 0.00 0.00 41.55 2.73
312 313 1.340568 GGTTAGAGGGACTGCGGTATC 59.659 57.143 0.00 0.00 41.55 2.24
313 314 1.340568 GTTAGAGGGACTGCGGTATCC 59.659 57.143 0.00 3.52 41.55 2.59
324 325 2.750350 GGTATCCCCGCCCATCAG 59.250 66.667 0.00 0.00 0.00 2.90
325 326 2.750350 GTATCCCCGCCCATCAGG 59.250 66.667 0.00 0.00 39.47 3.86
339 340 4.443978 CCATCAGGGTTCATATTCTGGT 57.556 45.455 0.00 0.00 0.00 4.00
340 341 4.139786 CCATCAGGGTTCATATTCTGGTG 58.860 47.826 0.00 0.00 37.90 4.17
341 342 3.281727 TCAGGGTTCATATTCTGGTGC 57.718 47.619 0.00 0.00 0.00 5.01
342 343 2.846206 TCAGGGTTCATATTCTGGTGCT 59.154 45.455 0.00 0.00 0.00 4.40
343 344 3.118261 TCAGGGTTCATATTCTGGTGCTC 60.118 47.826 0.00 0.00 0.00 4.26
344 345 2.158900 AGGGTTCATATTCTGGTGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
345 346 1.599542 GGTTCATATTCTGGTGCTCGC 59.400 52.381 0.00 0.00 0.00 5.03
346 347 2.279741 GTTCATATTCTGGTGCTCGCA 58.720 47.619 0.00 0.00 0.00 5.10
347 348 2.874701 GTTCATATTCTGGTGCTCGCAT 59.125 45.455 0.00 0.00 0.00 4.73
348 349 3.198409 TCATATTCTGGTGCTCGCATT 57.802 42.857 0.00 0.00 0.00 3.56
349 350 3.544684 TCATATTCTGGTGCTCGCATTT 58.455 40.909 0.00 0.00 0.00 2.32
350 351 4.702831 TCATATTCTGGTGCTCGCATTTA 58.297 39.130 0.00 0.00 0.00 1.40
351 352 5.308014 TCATATTCTGGTGCTCGCATTTAT 58.692 37.500 0.00 0.00 0.00 1.40
352 353 5.764686 TCATATTCTGGTGCTCGCATTTATT 59.235 36.000 0.00 0.00 0.00 1.40
353 354 4.989279 ATTCTGGTGCTCGCATTTATTT 57.011 36.364 0.00 0.00 0.00 1.40
354 355 4.355543 TTCTGGTGCTCGCATTTATTTC 57.644 40.909 0.00 0.00 0.00 2.17
355 356 3.342719 TCTGGTGCTCGCATTTATTTCA 58.657 40.909 0.00 0.00 0.00 2.69
356 357 3.374988 TCTGGTGCTCGCATTTATTTCAG 59.625 43.478 0.00 0.00 0.00 3.02
357 358 2.423185 TGGTGCTCGCATTTATTTCAGG 59.577 45.455 0.00 0.00 0.00 3.86
358 359 2.682856 GGTGCTCGCATTTATTTCAGGA 59.317 45.455 0.00 0.00 0.00 3.86
359 360 3.316308 GGTGCTCGCATTTATTTCAGGAT 59.684 43.478 0.00 0.00 0.00 3.24
360 361 4.202050 GGTGCTCGCATTTATTTCAGGATT 60.202 41.667 0.00 0.00 0.00 3.01
361 362 5.343249 GTGCTCGCATTTATTTCAGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
362 363 5.807011 GTGCTCGCATTTATTTCAGGATTTT 59.193 36.000 0.00 0.00 0.00 1.82
363 364 6.020360 GTGCTCGCATTTATTTCAGGATTTTC 60.020 38.462 0.00 0.00 0.00 2.29
364 365 5.172053 GCTCGCATTTATTTCAGGATTTTCG 59.828 40.000 0.00 0.00 0.00 3.46
365 366 5.577835 TCGCATTTATTTCAGGATTTTCGG 58.422 37.500 0.00 0.00 0.00 4.30
366 367 4.207019 CGCATTTATTTCAGGATTTTCGGC 59.793 41.667 0.00 0.00 0.00 5.54
367 368 4.207019 GCATTTATTTCAGGATTTTCGGCG 59.793 41.667 0.00 0.00 0.00 6.46
368 369 5.577835 CATTTATTTCAGGATTTTCGGCGA 58.422 37.500 4.99 4.99 0.00 5.54
369 370 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
370 371 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
371 372 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
372 373 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
384 385 2.689083 CGATGCGCATTTAGTGGGA 58.311 52.632 26.12 0.00 43.02 4.37
385 386 0.583438 CGATGCGCATTTAGTGGGAG 59.417 55.000 26.12 4.12 43.02 4.30
386 387 0.947244 GATGCGCATTTAGTGGGAGG 59.053 55.000 26.12 0.00 43.02 4.30
387 388 0.546122 ATGCGCATTTAGTGGGAGGA 59.454 50.000 19.28 0.00 43.02 3.71
388 389 0.107703 TGCGCATTTAGTGGGAGGAG 60.108 55.000 5.66 0.00 43.02 3.69
389 390 0.178068 GCGCATTTAGTGGGAGGAGA 59.822 55.000 0.30 0.00 43.02 3.71
390 391 1.941325 CGCATTTAGTGGGAGGAGAC 58.059 55.000 0.00 0.00 43.02 3.36
391 392 1.207089 CGCATTTAGTGGGAGGAGACA 59.793 52.381 0.00 0.00 43.02 3.41
392 393 2.158900 CGCATTTAGTGGGAGGAGACAT 60.159 50.000 0.00 0.00 43.02 3.06
393 394 3.682718 CGCATTTAGTGGGAGGAGACATT 60.683 47.826 0.00 0.00 43.02 2.71
394 395 3.879892 GCATTTAGTGGGAGGAGACATTC 59.120 47.826 0.00 0.00 0.00 2.67
395 396 3.887621 TTTAGTGGGAGGAGACATTCG 57.112 47.619 0.00 0.00 0.00 3.34
396 397 1.776662 TAGTGGGAGGAGACATTCGG 58.223 55.000 0.00 0.00 0.00 4.30
397 398 0.041238 AGTGGGAGGAGACATTCGGA 59.959 55.000 0.00 0.00 0.00 4.55
398 399 1.123928 GTGGGAGGAGACATTCGGAT 58.876 55.000 0.00 0.00 0.00 4.18
399 400 1.069358 GTGGGAGGAGACATTCGGATC 59.931 57.143 0.00 0.00 0.00 3.36
400 401 0.315568 GGGAGGAGACATTCGGATCG 59.684 60.000 0.00 0.00 0.00 3.69
401 402 1.319541 GGAGGAGACATTCGGATCGA 58.680 55.000 0.00 0.00 0.00 3.59
402 403 1.001158 GGAGGAGACATTCGGATCGAC 60.001 57.143 0.00 0.00 34.89 4.20
403 404 0.663688 AGGAGACATTCGGATCGACG 59.336 55.000 0.00 0.00 34.89 5.12
404 405 0.661552 GGAGACATTCGGATCGACGA 59.338 55.000 0.00 0.00 41.76 4.20
405 406 1.597445 GGAGACATTCGGATCGACGAC 60.597 57.143 0.00 0.00 43.37 4.34
406 407 0.027716 AGACATTCGGATCGACGACG 59.972 55.000 0.00 0.00 43.37 5.12
415 416 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
416 417 1.450848 TCGACGACGAGGTGCCTAT 60.451 57.895 5.75 0.00 43.81 2.57
417 418 1.298413 CGACGACGAGGTGCCTATG 60.298 63.158 0.00 0.00 42.66 2.23
418 419 1.712018 CGACGACGAGGTGCCTATGA 61.712 60.000 0.00 0.00 42.66 2.15
419 420 0.669077 GACGACGAGGTGCCTATGAT 59.331 55.000 0.00 0.00 0.00 2.45
420 421 0.385751 ACGACGAGGTGCCTATGATG 59.614 55.000 0.00 0.00 0.00 3.07
421 422 0.668535 CGACGAGGTGCCTATGATGA 59.331 55.000 0.00 0.00 0.00 2.92
422 423 1.600663 CGACGAGGTGCCTATGATGAC 60.601 57.143 0.00 0.00 0.00 3.06
423 424 1.683917 GACGAGGTGCCTATGATGACT 59.316 52.381 0.00 0.00 0.00 3.41
424 425 2.101582 GACGAGGTGCCTATGATGACTT 59.898 50.000 0.00 0.00 0.00 3.01
425 426 2.101582 ACGAGGTGCCTATGATGACTTC 59.898 50.000 0.00 0.00 0.00 3.01
426 427 2.748605 GAGGTGCCTATGATGACTTCG 58.251 52.381 0.00 0.00 0.00 3.79
427 428 2.101582 GAGGTGCCTATGATGACTTCGT 59.898 50.000 0.00 0.00 0.00 3.85
428 429 3.296854 AGGTGCCTATGATGACTTCGTA 58.703 45.455 0.00 0.00 0.00 3.43
429 430 3.704566 AGGTGCCTATGATGACTTCGTAA 59.295 43.478 0.00 0.00 0.00 3.18
430 431 4.161565 AGGTGCCTATGATGACTTCGTAAA 59.838 41.667 0.00 0.00 0.00 2.01
431 432 5.057149 GGTGCCTATGATGACTTCGTAAAT 58.943 41.667 0.00 0.00 0.00 1.40
432 433 5.527582 GGTGCCTATGATGACTTCGTAAATT 59.472 40.000 0.00 0.00 0.00 1.82
433 434 6.038271 GGTGCCTATGATGACTTCGTAAATTT 59.962 38.462 0.00 0.00 0.00 1.82
434 435 7.126398 GTGCCTATGATGACTTCGTAAATTTC 58.874 38.462 0.00 0.00 0.00 2.17
435 436 6.821160 TGCCTATGATGACTTCGTAAATTTCA 59.179 34.615 0.00 0.00 0.00 2.69
436 437 7.335673 TGCCTATGATGACTTCGTAAATTTCAA 59.664 33.333 0.00 0.00 0.00 2.69
437 438 7.852945 GCCTATGATGACTTCGTAAATTTCAAG 59.147 37.037 0.00 0.00 0.00 3.02
438 439 9.098355 CCTATGATGACTTCGTAAATTTCAAGA 57.902 33.333 0.00 0.00 0.00 3.02
447 448 9.864034 ACTTCGTAAATTTCAAGATAATATGCG 57.136 29.630 0.00 0.00 0.00 4.73
448 449 9.318041 CTTCGTAAATTTCAAGATAATATGCGG 57.682 33.333 0.00 0.00 0.00 5.69
449 450 7.802738 TCGTAAATTTCAAGATAATATGCGGG 58.197 34.615 0.00 0.00 0.00 6.13
450 451 6.523201 CGTAAATTTCAAGATAATATGCGGGC 59.477 38.462 0.00 0.00 0.00 6.13
451 452 6.655078 AAATTTCAAGATAATATGCGGGCT 57.345 33.333 0.00 0.00 0.00 5.19
452 453 5.886960 ATTTCAAGATAATATGCGGGCTC 57.113 39.130 0.00 0.00 0.00 4.70
453 454 4.350368 TTCAAGATAATATGCGGGCTCA 57.650 40.909 0.00 0.00 0.00 4.26
454 455 3.930336 TCAAGATAATATGCGGGCTCAG 58.070 45.455 0.00 0.00 0.00 3.35
455 456 3.324846 TCAAGATAATATGCGGGCTCAGT 59.675 43.478 0.00 0.00 0.00 3.41
456 457 3.601443 AGATAATATGCGGGCTCAGTC 57.399 47.619 0.00 0.00 0.00 3.51
457 458 3.169099 AGATAATATGCGGGCTCAGTCT 58.831 45.455 0.00 0.00 0.00 3.24
458 459 3.580458 AGATAATATGCGGGCTCAGTCTT 59.420 43.478 0.00 0.00 0.00 3.01
459 460 2.717639 AATATGCGGGCTCAGTCTTT 57.282 45.000 0.00 0.00 0.00 2.52
460 461 2.717639 ATATGCGGGCTCAGTCTTTT 57.282 45.000 0.00 0.00 0.00 2.27
461 462 3.838244 ATATGCGGGCTCAGTCTTTTA 57.162 42.857 0.00 0.00 0.00 1.52
462 463 2.029838 ATGCGGGCTCAGTCTTTTAG 57.970 50.000 0.00 0.00 0.00 1.85
463 464 0.973632 TGCGGGCTCAGTCTTTTAGA 59.026 50.000 0.00 0.00 0.00 2.10
464 465 1.555075 TGCGGGCTCAGTCTTTTAGAT 59.445 47.619 0.00 0.00 0.00 1.98
465 466 2.764010 TGCGGGCTCAGTCTTTTAGATA 59.236 45.455 0.00 0.00 0.00 1.98
466 467 3.388024 TGCGGGCTCAGTCTTTTAGATAT 59.612 43.478 0.00 0.00 0.00 1.63
467 468 3.743396 GCGGGCTCAGTCTTTTAGATATG 59.257 47.826 0.00 0.00 0.00 1.78
468 469 3.743396 CGGGCTCAGTCTTTTAGATATGC 59.257 47.826 0.00 0.00 0.00 3.14
469 470 4.502259 CGGGCTCAGTCTTTTAGATATGCT 60.502 45.833 0.00 0.00 0.00 3.79
470 471 4.994217 GGGCTCAGTCTTTTAGATATGCTC 59.006 45.833 0.00 0.00 0.00 4.26
471 472 4.683781 GGCTCAGTCTTTTAGATATGCTCG 59.316 45.833 0.00 0.00 0.00 5.03
472 473 5.285651 GCTCAGTCTTTTAGATATGCTCGT 58.714 41.667 0.00 0.00 0.00 4.18
473 474 6.439599 GCTCAGTCTTTTAGATATGCTCGTA 58.560 40.000 0.00 0.00 0.00 3.43
474 475 6.361214 GCTCAGTCTTTTAGATATGCTCGTAC 59.639 42.308 0.00 0.00 0.00 3.67
475 476 6.427974 TCAGTCTTTTAGATATGCTCGTACG 58.572 40.000 9.53 9.53 0.00 3.67
476 477 5.625721 CAGTCTTTTAGATATGCTCGTACGG 59.374 44.000 16.52 7.41 0.00 4.02
477 478 4.916249 GTCTTTTAGATATGCTCGTACGGG 59.084 45.833 16.52 14.27 0.00 5.28
478 479 4.581824 TCTTTTAGATATGCTCGTACGGGT 59.418 41.667 17.95 0.00 0.00 5.28
479 480 5.764686 TCTTTTAGATATGCTCGTACGGGTA 59.235 40.000 17.95 13.63 0.00 3.69
480 481 5.618056 TTTAGATATGCTCGTACGGGTAG 57.382 43.478 17.95 7.57 0.00 3.18
481 482 2.434428 AGATATGCTCGTACGGGTAGG 58.566 52.381 17.95 3.20 0.00 3.18
482 483 2.039480 AGATATGCTCGTACGGGTAGGA 59.961 50.000 17.95 8.10 0.00 2.94
483 484 2.574006 TATGCTCGTACGGGTAGGAT 57.426 50.000 17.95 14.89 30.73 3.24
484 485 0.959553 ATGCTCGTACGGGTAGGATG 59.040 55.000 17.95 0.00 30.73 3.51
485 486 0.394762 TGCTCGTACGGGTAGGATGT 60.395 55.000 17.95 0.00 30.73 3.06
486 487 0.030369 GCTCGTACGGGTAGGATGTG 59.970 60.000 17.95 0.00 30.73 3.21
487 488 0.030369 CTCGTACGGGTAGGATGTGC 59.970 60.000 16.52 0.00 30.73 4.57
488 489 1.298863 CGTACGGGTAGGATGTGCG 60.299 63.158 7.57 0.00 35.56 5.34
489 490 1.811860 GTACGGGTAGGATGTGCGT 59.188 57.895 0.00 0.00 0.00 5.24
490 491 0.526954 GTACGGGTAGGATGTGCGTG 60.527 60.000 0.00 0.00 0.00 5.34
491 492 0.966875 TACGGGTAGGATGTGCGTGT 60.967 55.000 0.00 0.00 0.00 4.49
492 493 1.809619 CGGGTAGGATGTGCGTGTG 60.810 63.158 0.00 0.00 0.00 3.82
493 494 1.295423 GGGTAGGATGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
494 495 0.533491 GGGTAGGATGTGCGTGTGTA 59.467 55.000 0.00 0.00 0.00 2.90
495 496 1.636988 GGTAGGATGTGCGTGTGTAC 58.363 55.000 0.00 0.00 0.00 2.90
496 497 1.067425 GGTAGGATGTGCGTGTGTACA 60.067 52.381 0.00 0.00 44.99 2.90
504 505 4.181309 TGTGCGTGTGTACATTCATAGA 57.819 40.909 0.00 0.00 35.67 1.98
505 506 4.754322 TGTGCGTGTGTACATTCATAGAT 58.246 39.130 0.00 0.00 35.67 1.98
506 507 4.566360 TGTGCGTGTGTACATTCATAGATG 59.434 41.667 0.00 0.00 35.67 2.90
507 508 4.566759 GTGCGTGTGTACATTCATAGATGT 59.433 41.667 0.00 0.00 42.57 3.06
508 509 4.566360 TGCGTGTGTACATTCATAGATGTG 59.434 41.667 0.00 0.00 40.33 3.21
509 510 4.803613 GCGTGTGTACATTCATAGATGTGA 59.196 41.667 0.00 0.00 40.33 3.58
510 511 5.051441 GCGTGTGTACATTCATAGATGTGAG 60.051 44.000 0.00 0.00 40.33 3.51
511 512 6.036470 CGTGTGTACATTCATAGATGTGAGT 58.964 40.000 0.00 0.00 40.33 3.41
512 513 6.020360 CGTGTGTACATTCATAGATGTGAGTG 60.020 42.308 0.00 1.43 40.33 3.51
513 514 6.813649 GTGTGTACATTCATAGATGTGAGTGT 59.186 38.462 11.37 11.37 46.52 3.55
514 515 7.973944 GTGTGTACATTCATAGATGTGAGTGTA 59.026 37.037 9.74 9.74 44.17 2.90
515 516 8.695456 TGTGTACATTCATAGATGTGAGTGTAT 58.305 33.333 14.72 0.00 46.21 2.29
516 517 8.972349 GTGTACATTCATAGATGTGAGTGTATG 58.028 37.037 14.72 3.80 46.21 2.39
517 518 7.653311 TGTACATTCATAGATGTGAGTGTATGC 59.347 37.037 14.72 6.91 46.21 3.14
518 519 5.693555 ACATTCATAGATGTGAGTGTATGCG 59.306 40.000 6.04 0.00 44.17 4.73
519 520 3.642705 TCATAGATGTGAGTGTATGCGC 58.357 45.455 0.00 0.00 0.00 6.09
520 521 2.119671 TAGATGTGAGTGTATGCGCG 57.880 50.000 0.00 0.00 0.00 6.86
521 522 0.173481 AGATGTGAGTGTATGCGCGT 59.827 50.000 8.43 7.55 0.00 6.01
522 523 0.298707 GATGTGAGTGTATGCGCGTG 59.701 55.000 13.61 0.00 0.00 5.34
523 524 0.389817 ATGTGAGTGTATGCGCGTGT 60.390 50.000 13.61 0.00 0.00 4.49
524 525 0.241481 TGTGAGTGTATGCGCGTGTA 59.759 50.000 13.61 0.00 0.00 2.90
525 526 1.135228 TGTGAGTGTATGCGCGTGTAT 60.135 47.619 13.61 4.63 0.00 2.29
526 527 2.097791 TGTGAGTGTATGCGCGTGTATA 59.902 45.455 13.61 2.40 0.00 1.47
527 528 3.243267 TGTGAGTGTATGCGCGTGTATAT 60.243 43.478 13.61 0.00 0.00 0.86
528 529 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
529 530 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
530 531 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
531 532 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
537 538 0.232303 GCGTGTATATGAGCGGTTGC 59.768 55.000 0.00 0.00 43.24 4.17
538 539 1.566404 CGTGTATATGAGCGGTTGCA 58.434 50.000 0.00 0.00 46.23 4.08
539 540 2.135139 CGTGTATATGAGCGGTTGCAT 58.865 47.619 0.00 0.00 46.23 3.96
540 541 2.155732 CGTGTATATGAGCGGTTGCATC 59.844 50.000 0.00 0.00 46.23 3.91
541 542 3.393800 GTGTATATGAGCGGTTGCATCT 58.606 45.455 0.00 0.00 46.23 2.90
542 543 4.556233 GTGTATATGAGCGGTTGCATCTA 58.444 43.478 0.00 0.00 46.23 1.98
543 544 5.171476 GTGTATATGAGCGGTTGCATCTAT 58.829 41.667 0.00 0.00 46.23 1.98
544 545 6.330278 GTGTATATGAGCGGTTGCATCTATA 58.670 40.000 0.00 0.00 46.23 1.31
545 546 6.253727 GTGTATATGAGCGGTTGCATCTATAC 59.746 42.308 0.00 0.00 46.23 1.47
546 547 5.667539 ATATGAGCGGTTGCATCTATACT 57.332 39.130 0.00 0.00 46.23 2.12
547 548 6.775594 ATATGAGCGGTTGCATCTATACTA 57.224 37.500 0.00 0.00 46.23 1.82
548 549 5.667539 ATGAGCGGTTGCATCTATACTAT 57.332 39.130 0.00 0.00 46.23 2.12
549 550 4.809673 TGAGCGGTTGCATCTATACTATG 58.190 43.478 0.00 0.00 46.23 2.23
550 551 4.280929 TGAGCGGTTGCATCTATACTATGT 59.719 41.667 0.00 0.00 46.23 2.29
551 552 5.215252 AGCGGTTGCATCTATACTATGTT 57.785 39.130 0.00 0.00 46.23 2.71
552 553 6.015772 TGAGCGGTTGCATCTATACTATGTTA 60.016 38.462 0.00 0.00 46.23 2.41
553 554 6.755206 AGCGGTTGCATCTATACTATGTTAA 58.245 36.000 0.00 0.00 46.23 2.01
554 555 7.214381 AGCGGTTGCATCTATACTATGTTAAA 58.786 34.615 0.00 0.00 46.23 1.52
555 556 7.713507 AGCGGTTGCATCTATACTATGTTAAAA 59.286 33.333 0.00 0.00 46.23 1.52
597 598 9.587772 TTCAACAAAAATAAAAATCAAGGTCGA 57.412 25.926 0.00 0.00 0.00 4.20
598 599 9.026074 TCAACAAAAATAAAAATCAAGGTCGAC 57.974 29.630 7.13 7.13 0.00 4.20
599 600 9.030301 CAACAAAAATAAAAATCAAGGTCGACT 57.970 29.630 16.46 0.00 0.00 4.18
600 601 9.594478 AACAAAAATAAAAATCAAGGTCGACTT 57.406 25.926 16.46 4.52 41.00 3.01
631 722 9.489084 TTTGAAGAAAGAAGATCGACTTATCAA 57.511 29.630 16.47 16.47 39.13 2.57
639 730 8.362860 AGAAGATCGACTTATCAATCATTGTG 57.637 34.615 0.00 0.00 39.13 3.33
645 736 9.981114 ATCGACTTATCAATCATTGTGTACATA 57.019 29.630 0.00 0.00 0.00 2.29
647 738 9.249457 CGACTTATCAATCATTGTGTACATACT 57.751 33.333 0.00 0.00 0.00 2.12
659 750 9.989869 CATTGTGTACATACTATATACTCTCGG 57.010 37.037 0.00 0.00 0.00 4.63
717 812 5.910614 AGGACTACTAGACACGTTTTTGTT 58.089 37.500 0.00 0.00 0.00 2.83
722 817 2.131776 AGACACGTTTTTGTTGGGGA 57.868 45.000 0.00 0.00 0.00 4.81
725 820 2.944349 GACACGTTTTTGTTGGGGACTA 59.056 45.455 0.00 0.00 0.00 2.59
726 821 2.946990 ACACGTTTTTGTTGGGGACTAG 59.053 45.455 0.00 0.00 0.00 2.57
727 822 3.207778 CACGTTTTTGTTGGGGACTAGA 58.792 45.455 0.00 0.00 0.00 2.43
728 823 3.002965 CACGTTTTTGTTGGGGACTAGAC 59.997 47.826 0.00 0.00 0.00 2.59
729 824 3.207778 CGTTTTTGTTGGGGACTAGACA 58.792 45.455 0.00 0.00 0.00 3.41
730 825 3.628487 CGTTTTTGTTGGGGACTAGACAA 59.372 43.478 0.00 0.00 0.00 3.18
733 828 4.513406 TTTGTTGGGGACTAGACAAGTT 57.487 40.909 0.00 0.00 39.07 2.66
736 831 3.181458 TGTTGGGGACTAGACAAGTTGAC 60.181 47.826 10.54 3.09 39.07 3.18
737 832 1.616865 TGGGGACTAGACAAGTTGACG 59.383 52.381 10.54 0.00 39.07 4.35
738 833 1.891150 GGGGACTAGACAAGTTGACGA 59.109 52.381 10.54 0.00 39.07 4.20
739 834 2.094649 GGGGACTAGACAAGTTGACGAG 60.095 54.545 10.54 11.65 39.07 4.18
740 835 2.094649 GGGACTAGACAAGTTGACGAGG 60.095 54.545 10.54 2.25 39.07 4.63
741 836 2.557490 GGACTAGACAAGTTGACGAGGT 59.443 50.000 10.54 5.37 39.07 3.85
742 837 3.366171 GGACTAGACAAGTTGACGAGGTC 60.366 52.174 10.54 13.08 39.07 3.85
743 838 2.557490 ACTAGACAAGTTGACGAGGTCC 59.443 50.000 10.54 0.00 33.35 4.46
744 839 1.705873 AGACAAGTTGACGAGGTCCT 58.294 50.000 10.54 0.00 0.00 3.85
745 840 2.872732 AGACAAGTTGACGAGGTCCTA 58.127 47.619 10.54 0.00 0.00 2.94
746 841 3.228453 AGACAAGTTGACGAGGTCCTAA 58.772 45.455 10.54 0.00 0.00 2.69
747 842 3.640029 AGACAAGTTGACGAGGTCCTAAA 59.360 43.478 10.54 0.00 0.00 1.85
748 843 4.100498 AGACAAGTTGACGAGGTCCTAAAA 59.900 41.667 10.54 0.00 0.00 1.52
749 844 4.773013 ACAAGTTGACGAGGTCCTAAAAA 58.227 39.130 10.54 0.00 0.00 1.94
767 862 2.732001 AAAAAGACACGTTGACGAGC 57.268 45.000 10.87 0.00 43.02 5.03
804 899 4.041198 TGGATTCAAACCCGAGTCTAACTT 59.959 41.667 0.00 0.00 0.00 2.66
815 910 4.045104 CGAGTCTAACTTCCCGATGAATG 58.955 47.826 0.00 0.00 31.06 2.67
940 1050 1.002366 CGCTCCTGTCTTTCGATTGG 58.998 55.000 0.00 0.00 0.00 3.16
1080 1215 2.943978 CGAGGTTGAGGAGGCGGTT 61.944 63.158 0.00 0.00 0.00 4.44
1177 1313 3.445450 CGACTCAAAGATCCTCTCCAAGA 59.555 47.826 0.00 0.00 0.00 3.02
1273 1409 1.965754 CTCCACCTCTACTGCAGCCC 61.966 65.000 15.27 0.00 0.00 5.19
1338 1474 3.637273 GTCGACCAGGCCACCCTT 61.637 66.667 5.01 0.00 40.33 3.95
1374 1510 2.558359 GGCTGCAAACTACCTCAACATT 59.442 45.455 0.50 0.00 0.00 2.71
1410 1552 2.498167 CTTACTTGCCAGACTGTTGCT 58.502 47.619 0.93 0.00 0.00 3.91
1539 2254 6.090493 GGGCTTTTGAGTAGAAAGTAGTAACG 59.910 42.308 0.00 0.00 36.67 3.18
1720 2468 6.588204 TGGTAGTCATTACTTGTGAAACTGT 58.412 36.000 0.00 0.00 35.76 3.55
1725 2473 8.677148 AGTCATTACTTGTGAAACTGTATTGT 57.323 30.769 0.00 0.00 38.04 2.71
1782 2538 5.057149 CCTTAGCTGATTTATAGCGTGGTT 58.943 41.667 0.00 0.00 45.61 3.67
1783 2539 5.527582 CCTTAGCTGATTTATAGCGTGGTTT 59.472 40.000 0.00 0.00 45.61 3.27
1784 2540 6.292919 CCTTAGCTGATTTATAGCGTGGTTTC 60.293 42.308 0.00 0.00 45.61 2.78
1785 2541 4.513442 AGCTGATTTATAGCGTGGTTTCA 58.487 39.130 0.00 0.00 45.61 2.69
1786 2542 4.572389 AGCTGATTTATAGCGTGGTTTCAG 59.428 41.667 0.00 0.00 45.61 3.02
1787 2543 4.570772 GCTGATTTATAGCGTGGTTTCAGA 59.429 41.667 9.80 0.00 32.96 3.27
1788 2544 5.237344 GCTGATTTATAGCGTGGTTTCAGAT 59.763 40.000 9.80 0.00 32.96 2.90
1791 2547 6.821160 TGATTTATAGCGTGGTTTCAGATGAA 59.179 34.615 0.00 0.00 0.00 2.57
1792 2548 6.417191 TTTATAGCGTGGTTTCAGATGAAC 57.583 37.500 0.00 0.00 33.13 3.18
1793 2549 2.254546 AGCGTGGTTTCAGATGAACA 57.745 45.000 0.00 0.00 33.13 3.18
1876 2649 8.517878 CAACCAGAGACAATGTTGATATTTTCT 58.482 33.333 0.00 0.00 40.30 2.52
1933 5003 8.762481 TCTACAACTATGTTTCTCCATAGCTA 57.238 34.615 0.00 0.00 45.36 3.32
2040 5110 9.666626 TTTTCAAATGCATGATTGATGTTTTTC 57.333 25.926 13.25 0.00 35.63 2.29
2092 5162 9.767684 CACATTGTATACATTTTTCGTGTACAT 57.232 29.630 6.36 0.00 39.64 2.29
2182 5254 6.481644 TGGTTAACATTTTTCAAATGCCTGAC 59.518 34.615 8.10 4.47 0.00 3.51
2186 5258 7.713764 AACATTTTTCAAATGCCTGACTAAC 57.286 32.000 8.77 0.00 0.00 2.34
2187 5259 6.815089 ACATTTTTCAAATGCCTGACTAACA 58.185 32.000 8.77 0.00 0.00 2.41
2188 5260 7.271511 ACATTTTTCAAATGCCTGACTAACAA 58.728 30.769 8.77 0.00 0.00 2.83
2317 5390 9.581099 AACACTTGTCAAATGTTTTAGGTAAAG 57.419 29.630 6.58 0.00 32.70 1.85
2429 5504 9.534565 AAAAGAAAAACTAGAAGAAAATGAGGC 57.465 29.630 0.00 0.00 0.00 4.70
2434 5509 4.583871 ACTAGAAGAAAATGAGGCTGTGG 58.416 43.478 0.00 0.00 0.00 4.17
2453 5528 1.962822 CATATGGCCTCGCGTGCAT 60.963 57.895 21.16 13.88 0.00 3.96
2454 5529 0.670239 CATATGGCCTCGCGTGCATA 60.670 55.000 21.16 15.31 0.00 3.14
2457 5532 4.017877 GGCCTCGCGTGCATATGC 62.018 66.667 21.09 21.09 42.50 3.14
2458 5533 4.017877 GCCTCGCGTGCATATGCC 62.018 66.667 24.54 14.55 41.18 4.40
2459 5534 3.705638 CCTCGCGTGCATATGCCG 61.706 66.667 24.54 24.84 41.18 5.69
2505 5582 0.176680 AGGCTGCCTTACATCTCACG 59.823 55.000 17.22 0.00 0.00 4.35
2506 5583 1.432270 GGCTGCCTTACATCTCACGC 61.432 60.000 12.43 0.00 0.00 5.34
2507 5584 0.460987 GCTGCCTTACATCTCACGCT 60.461 55.000 0.00 0.00 0.00 5.07
2508 5585 2.009042 GCTGCCTTACATCTCACGCTT 61.009 52.381 0.00 0.00 0.00 4.68
2509 5586 1.662629 CTGCCTTACATCTCACGCTTG 59.337 52.381 0.00 0.00 0.00 4.01
2514 5591 1.725641 TACATCTCACGCTTGGCAAG 58.274 50.000 22.75 22.75 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.453015 GTCACACACACAAGCCCCA 60.453 57.895 0.00 0.00 0.00 4.96
52 53 5.298276 GTCGGTTAATCCAGATTAATTGGCA 59.702 40.000 14.23 0.00 42.93 4.92
60 61 6.239345 GGAGACATAGTCGGTTAATCCAGATT 60.239 42.308 0.00 0.00 37.67 2.40
92 93 1.839994 GGTTGAGATCCTGTCATGGGA 59.160 52.381 0.00 0.00 37.26 4.37
97 98 1.191489 TGCCGGTTGAGATCCTGTCA 61.191 55.000 1.90 0.00 0.00 3.58
98 99 0.036388 TTGCCGGTTGAGATCCTGTC 60.036 55.000 1.90 0.00 0.00 3.51
109 110 2.625823 CGATGGTGCTTTGCCGGTT 61.626 57.895 1.90 0.00 0.00 4.44
115 116 3.362014 CGATTATCGACGATGGTGCTTTG 60.362 47.826 20.42 0.00 43.74 2.77
188 189 5.177511 CCGCTACACAAATACATGACCATAG 59.822 44.000 0.00 0.00 0.00 2.23
190 191 3.876914 CCGCTACACAAATACATGACCAT 59.123 43.478 0.00 0.00 0.00 3.55
191 192 3.266636 CCGCTACACAAATACATGACCA 58.733 45.455 0.00 0.00 0.00 4.02
223 224 0.387929 TAGCGAGAAATACCGGCTGG 59.612 55.000 11.02 11.02 42.84 4.85
240 241 1.003545 GTGTATGCTGCCGTGCAATAG 60.004 52.381 0.00 0.00 46.61 1.73
249 250 5.163519 ACTGGATTAAAATGTGTATGCTGCC 60.164 40.000 0.00 0.00 0.00 4.85
278 279 4.103785 CCCTCTAACCATCCAATCACAGAT 59.896 45.833 0.00 0.00 0.00 2.90
279 280 3.455910 CCCTCTAACCATCCAATCACAGA 59.544 47.826 0.00 0.00 0.00 3.41
281 282 3.199946 GTCCCTCTAACCATCCAATCACA 59.800 47.826 0.00 0.00 0.00 3.58
283 284 3.455910 CAGTCCCTCTAACCATCCAATCA 59.544 47.826 0.00 0.00 0.00 2.57
285 286 2.173569 GCAGTCCCTCTAACCATCCAAT 59.826 50.000 0.00 0.00 0.00 3.16
286 287 1.559682 GCAGTCCCTCTAACCATCCAA 59.440 52.381 0.00 0.00 0.00 3.53
287 288 1.204146 GCAGTCCCTCTAACCATCCA 58.796 55.000 0.00 0.00 0.00 3.41
288 289 0.105039 CGCAGTCCCTCTAACCATCC 59.895 60.000 0.00 0.00 0.00 3.51
289 290 0.105039 CCGCAGTCCCTCTAACCATC 59.895 60.000 0.00 0.00 0.00 3.51
290 291 0.617820 ACCGCAGTCCCTCTAACCAT 60.618 55.000 0.00 0.00 0.00 3.55
291 292 0.040058 TACCGCAGTCCCTCTAACCA 59.960 55.000 0.00 0.00 0.00 3.67
292 293 1.340568 GATACCGCAGTCCCTCTAACC 59.659 57.143 0.00 0.00 0.00 2.85
293 294 1.340568 GGATACCGCAGTCCCTCTAAC 59.659 57.143 0.00 0.00 0.00 2.34
294 295 1.700955 GGATACCGCAGTCCCTCTAA 58.299 55.000 0.00 0.00 0.00 2.10
295 296 3.434053 GGATACCGCAGTCCCTCTA 57.566 57.895 0.00 0.00 0.00 2.43
296 297 4.279326 GGATACCGCAGTCCCTCT 57.721 61.111 0.00 0.00 0.00 3.69
308 309 2.750350 CCTGATGGGCGGGGATAC 59.250 66.667 0.00 0.00 39.56 2.24
318 319 4.139786 CACCAGAATATGAACCCTGATGG 58.860 47.826 0.00 0.00 41.37 3.51
319 320 3.567164 GCACCAGAATATGAACCCTGATG 59.433 47.826 0.00 0.00 0.00 3.07
320 321 3.461085 AGCACCAGAATATGAACCCTGAT 59.539 43.478 0.00 0.00 0.00 2.90
321 322 2.846206 AGCACCAGAATATGAACCCTGA 59.154 45.455 0.00 0.00 0.00 3.86
322 323 3.209410 GAGCACCAGAATATGAACCCTG 58.791 50.000 0.00 0.00 0.00 4.45
323 324 2.158900 CGAGCACCAGAATATGAACCCT 60.159 50.000 0.00 0.00 0.00 4.34
324 325 2.213499 CGAGCACCAGAATATGAACCC 58.787 52.381 0.00 0.00 0.00 4.11
325 326 1.599542 GCGAGCACCAGAATATGAACC 59.400 52.381 0.00 0.00 0.00 3.62
326 327 2.279741 TGCGAGCACCAGAATATGAAC 58.720 47.619 0.00 0.00 0.00 3.18
327 328 2.689553 TGCGAGCACCAGAATATGAA 57.310 45.000 0.00 0.00 0.00 2.57
328 329 2.916702 ATGCGAGCACCAGAATATGA 57.083 45.000 0.00 0.00 0.00 2.15
329 330 3.976793 AAATGCGAGCACCAGAATATG 57.023 42.857 0.00 0.00 0.00 1.78
330 331 6.262944 TGAAATAAATGCGAGCACCAGAATAT 59.737 34.615 0.00 0.00 0.00 1.28
331 332 5.588246 TGAAATAAATGCGAGCACCAGAATA 59.412 36.000 0.00 0.00 0.00 1.75
332 333 4.398988 TGAAATAAATGCGAGCACCAGAAT 59.601 37.500 0.00 0.00 0.00 2.40
333 334 3.755905 TGAAATAAATGCGAGCACCAGAA 59.244 39.130 0.00 0.00 0.00 3.02
334 335 3.342719 TGAAATAAATGCGAGCACCAGA 58.657 40.909 0.00 0.00 0.00 3.86
335 336 3.488047 CCTGAAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.34 0.00 4.00
336 337 2.423185 CCTGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
337 338 2.682856 TCCTGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
338 339 4.558538 ATCCTGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
339 340 5.581126 AAATCCTGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
340 341 5.172053 CGAAAATCCTGAAATAAATGCGAGC 59.828 40.000 0.00 0.00 0.00 5.03
341 342 5.682862 CCGAAAATCCTGAAATAAATGCGAG 59.317 40.000 0.00 0.00 0.00 5.03
342 343 5.577835 CCGAAAATCCTGAAATAAATGCGA 58.422 37.500 0.00 0.00 0.00 5.10
343 344 4.207019 GCCGAAAATCCTGAAATAAATGCG 59.793 41.667 0.00 0.00 0.00 4.73
344 345 4.207019 CGCCGAAAATCCTGAAATAAATGC 59.793 41.667 0.00 0.00 0.00 3.56
345 346 5.577835 TCGCCGAAAATCCTGAAATAAATG 58.422 37.500 0.00 0.00 0.00 2.32
346 347 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
347 348 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
348 349 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
349 350 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
350 351 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
351 352 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
352 353 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
353 354 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
354 355 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
355 356 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
366 367 0.583438 CTCCCACTAAATGCGCATCG 59.417 55.000 25.53 17.09 0.00 3.84
367 368 0.947244 CCTCCCACTAAATGCGCATC 59.053 55.000 25.53 0.00 0.00 3.91
368 369 0.546122 TCCTCCCACTAAATGCGCAT 59.454 50.000 19.28 19.28 0.00 4.73
369 370 0.107703 CTCCTCCCACTAAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
370 371 0.178068 TCTCCTCCCACTAAATGCGC 59.822 55.000 0.00 0.00 0.00 6.09
371 372 1.207089 TGTCTCCTCCCACTAAATGCG 59.793 52.381 0.00 0.00 0.00 4.73
372 373 3.567478 ATGTCTCCTCCCACTAAATGC 57.433 47.619 0.00 0.00 0.00 3.56
373 374 4.122776 CGAATGTCTCCTCCCACTAAATG 58.877 47.826 0.00 0.00 0.00 2.32
374 375 3.134804 CCGAATGTCTCCTCCCACTAAAT 59.865 47.826 0.00 0.00 0.00 1.40
375 376 2.500098 CCGAATGTCTCCTCCCACTAAA 59.500 50.000 0.00 0.00 0.00 1.85
376 377 2.108168 CCGAATGTCTCCTCCCACTAA 58.892 52.381 0.00 0.00 0.00 2.24
377 378 1.286849 TCCGAATGTCTCCTCCCACTA 59.713 52.381 0.00 0.00 0.00 2.74
378 379 0.041238 TCCGAATGTCTCCTCCCACT 59.959 55.000 0.00 0.00 0.00 4.00
379 380 1.069358 GATCCGAATGTCTCCTCCCAC 59.931 57.143 0.00 0.00 0.00 4.61
380 381 1.414158 GATCCGAATGTCTCCTCCCA 58.586 55.000 0.00 0.00 0.00 4.37
381 382 0.315568 CGATCCGAATGTCTCCTCCC 59.684 60.000 0.00 0.00 0.00 4.30
382 383 1.001158 GTCGATCCGAATGTCTCCTCC 60.001 57.143 0.00 0.00 37.72 4.30
383 384 1.334239 CGTCGATCCGAATGTCTCCTC 60.334 57.143 0.00 0.00 37.72 3.71
384 385 0.663688 CGTCGATCCGAATGTCTCCT 59.336 55.000 0.00 0.00 37.72 3.69
385 386 0.661552 TCGTCGATCCGAATGTCTCC 59.338 55.000 0.00 0.00 37.72 3.71
386 387 1.744374 GTCGTCGATCCGAATGTCTC 58.256 55.000 0.00 0.00 38.80 3.36
387 388 0.027716 CGTCGTCGATCCGAATGTCT 59.972 55.000 0.00 0.00 38.80 3.41
388 389 0.027194 TCGTCGTCGATCCGAATGTC 59.973 55.000 5.57 0.00 41.35 3.06
389 390 0.027716 CTCGTCGTCGATCCGAATGT 59.972 55.000 5.00 0.00 45.21 2.71
390 391 0.657659 CCTCGTCGTCGATCCGAATG 60.658 60.000 5.00 0.00 45.21 2.67
391 392 1.094073 ACCTCGTCGTCGATCCGAAT 61.094 55.000 5.00 0.00 45.21 3.34
392 393 1.742880 ACCTCGTCGTCGATCCGAA 60.743 57.895 5.00 0.00 45.21 4.30
393 394 2.125391 ACCTCGTCGTCGATCCGA 60.125 61.111 5.00 7.59 45.21 4.55
394 395 2.022902 CACCTCGTCGTCGATCCG 59.977 66.667 5.00 0.00 45.21 4.18
395 396 2.278013 GCACCTCGTCGTCGATCC 60.278 66.667 5.00 0.00 45.21 3.36
396 397 1.434622 TAGGCACCTCGTCGTCGATC 61.435 60.000 5.00 0.00 45.21 3.69
397 398 0.818445 ATAGGCACCTCGTCGTCGAT 60.818 55.000 5.00 0.00 45.21 3.59
398 399 1.450848 ATAGGCACCTCGTCGTCGA 60.451 57.895 4.42 4.42 44.12 4.20
399 400 1.298413 CATAGGCACCTCGTCGTCG 60.298 63.158 0.00 0.00 38.55 5.12
400 401 0.669077 ATCATAGGCACCTCGTCGTC 59.331 55.000 0.00 0.00 0.00 4.20
401 402 0.385751 CATCATAGGCACCTCGTCGT 59.614 55.000 0.00 0.00 0.00 4.34
402 403 0.668535 TCATCATAGGCACCTCGTCG 59.331 55.000 0.00 0.00 0.00 5.12
403 404 1.683917 AGTCATCATAGGCACCTCGTC 59.316 52.381 0.00 0.00 0.00 4.20
404 405 1.781786 AGTCATCATAGGCACCTCGT 58.218 50.000 0.00 0.00 0.00 4.18
405 406 2.748605 GAAGTCATCATAGGCACCTCG 58.251 52.381 0.00 0.00 0.00 4.63
406 407 2.101582 ACGAAGTCATCATAGGCACCTC 59.898 50.000 0.00 0.00 29.74 3.85
407 408 2.111384 ACGAAGTCATCATAGGCACCT 58.889 47.619 0.00 0.00 29.74 4.00
408 409 2.604046 ACGAAGTCATCATAGGCACC 57.396 50.000 0.00 0.00 29.74 5.01
409 410 6.604735 AATTTACGAAGTCATCATAGGCAC 57.395 37.500 0.00 0.00 43.93 5.01
410 411 6.821160 TGAAATTTACGAAGTCATCATAGGCA 59.179 34.615 0.00 0.00 43.93 4.75
411 412 7.246674 TGAAATTTACGAAGTCATCATAGGC 57.753 36.000 0.00 0.00 43.93 3.93
412 413 9.098355 TCTTGAAATTTACGAAGTCATCATAGG 57.902 33.333 0.00 0.00 43.93 2.57
422 423 9.318041 CCGCATATTATCTTGAAATTTACGAAG 57.682 33.333 0.00 0.00 0.00 3.79
423 424 8.286800 CCCGCATATTATCTTGAAATTTACGAA 58.713 33.333 0.00 0.00 0.00 3.85
424 425 7.572353 GCCCGCATATTATCTTGAAATTTACGA 60.572 37.037 0.00 0.00 0.00 3.43
425 426 6.523201 GCCCGCATATTATCTTGAAATTTACG 59.477 38.462 0.00 0.00 0.00 3.18
426 427 7.593825 AGCCCGCATATTATCTTGAAATTTAC 58.406 34.615 0.00 0.00 0.00 2.01
427 428 7.446931 TGAGCCCGCATATTATCTTGAAATTTA 59.553 33.333 0.00 0.00 0.00 1.40
428 429 6.265196 TGAGCCCGCATATTATCTTGAAATTT 59.735 34.615 0.00 0.00 0.00 1.82
429 430 5.769662 TGAGCCCGCATATTATCTTGAAATT 59.230 36.000 0.00 0.00 0.00 1.82
430 431 5.316167 TGAGCCCGCATATTATCTTGAAAT 58.684 37.500 0.00 0.00 0.00 2.17
431 432 4.713553 TGAGCCCGCATATTATCTTGAAA 58.286 39.130 0.00 0.00 0.00 2.69
432 433 4.202357 ACTGAGCCCGCATATTATCTTGAA 60.202 41.667 0.00 0.00 0.00 2.69
433 434 3.324846 ACTGAGCCCGCATATTATCTTGA 59.675 43.478 0.00 0.00 0.00 3.02
434 435 3.668447 ACTGAGCCCGCATATTATCTTG 58.332 45.455 0.00 0.00 0.00 3.02
435 436 3.580458 AGACTGAGCCCGCATATTATCTT 59.420 43.478 0.00 0.00 0.00 2.40
436 437 3.169099 AGACTGAGCCCGCATATTATCT 58.831 45.455 0.00 0.00 0.00 1.98
437 438 3.601443 AGACTGAGCCCGCATATTATC 57.399 47.619 0.00 0.00 0.00 1.75
438 439 4.357918 AAAGACTGAGCCCGCATATTAT 57.642 40.909 0.00 0.00 0.00 1.28
439 440 3.838244 AAAGACTGAGCCCGCATATTA 57.162 42.857 0.00 0.00 0.00 0.98
440 441 2.717639 AAAGACTGAGCCCGCATATT 57.282 45.000 0.00 0.00 0.00 1.28
441 442 2.717639 AAAAGACTGAGCCCGCATAT 57.282 45.000 0.00 0.00 0.00 1.78
442 443 2.764010 TCTAAAAGACTGAGCCCGCATA 59.236 45.455 0.00 0.00 0.00 3.14
443 444 1.555075 TCTAAAAGACTGAGCCCGCAT 59.445 47.619 0.00 0.00 0.00 4.73
444 445 0.973632 TCTAAAAGACTGAGCCCGCA 59.026 50.000 0.00 0.00 0.00 5.69
445 446 2.317530 ATCTAAAAGACTGAGCCCGC 57.682 50.000 0.00 0.00 0.00 6.13
446 447 3.743396 GCATATCTAAAAGACTGAGCCCG 59.257 47.826 0.00 0.00 0.00 6.13
447 448 4.967036 AGCATATCTAAAAGACTGAGCCC 58.033 43.478 0.00 0.00 0.00 5.19
448 449 4.683781 CGAGCATATCTAAAAGACTGAGCC 59.316 45.833 0.00 0.00 0.00 4.70
449 450 5.285651 ACGAGCATATCTAAAAGACTGAGC 58.714 41.667 0.00 0.00 0.00 4.26
450 451 6.575572 CGTACGAGCATATCTAAAAGACTGAG 59.424 42.308 10.44 0.00 0.00 3.35
451 452 6.427974 CGTACGAGCATATCTAAAAGACTGA 58.572 40.000 10.44 0.00 0.00 3.41
452 453 5.625721 CCGTACGAGCATATCTAAAAGACTG 59.374 44.000 18.76 0.00 0.00 3.51
453 454 5.278364 CCCGTACGAGCATATCTAAAAGACT 60.278 44.000 18.76 0.00 0.00 3.24
454 455 4.916249 CCCGTACGAGCATATCTAAAAGAC 59.084 45.833 18.76 0.00 0.00 3.01
455 456 4.581824 ACCCGTACGAGCATATCTAAAAGA 59.418 41.667 18.76 0.00 0.00 2.52
456 457 4.868067 ACCCGTACGAGCATATCTAAAAG 58.132 43.478 18.76 0.00 0.00 2.27
457 458 4.924305 ACCCGTACGAGCATATCTAAAA 57.076 40.909 18.76 0.00 0.00 1.52
458 459 4.456911 CCTACCCGTACGAGCATATCTAAA 59.543 45.833 18.76 0.00 0.00 1.85
459 460 4.005650 CCTACCCGTACGAGCATATCTAA 58.994 47.826 18.76 0.00 0.00 2.10
460 461 3.261643 TCCTACCCGTACGAGCATATCTA 59.738 47.826 18.76 0.00 0.00 1.98
461 462 2.039480 TCCTACCCGTACGAGCATATCT 59.961 50.000 18.76 0.00 0.00 1.98
462 463 2.430465 TCCTACCCGTACGAGCATATC 58.570 52.381 18.76 0.00 0.00 1.63
463 464 2.574006 TCCTACCCGTACGAGCATAT 57.426 50.000 18.76 0.00 0.00 1.78
464 465 2.156917 CATCCTACCCGTACGAGCATA 58.843 52.381 18.76 2.36 0.00 3.14
465 466 0.959553 CATCCTACCCGTACGAGCAT 59.040 55.000 18.76 0.00 0.00 3.79
466 467 0.394762 ACATCCTACCCGTACGAGCA 60.395 55.000 18.76 0.00 0.00 4.26
467 468 0.030369 CACATCCTACCCGTACGAGC 59.970 60.000 18.76 0.00 0.00 5.03
468 469 0.030369 GCACATCCTACCCGTACGAG 59.970 60.000 18.76 5.89 0.00 4.18
469 470 1.717791 CGCACATCCTACCCGTACGA 61.718 60.000 18.76 0.00 0.00 3.43
470 471 1.298863 CGCACATCCTACCCGTACG 60.299 63.158 8.69 8.69 0.00 3.67
471 472 0.526954 CACGCACATCCTACCCGTAC 60.527 60.000 0.00 0.00 0.00 3.67
472 473 0.966875 ACACGCACATCCTACCCGTA 60.967 55.000 0.00 0.00 0.00 4.02
473 474 2.280552 ACACGCACATCCTACCCGT 61.281 57.895 0.00 0.00 0.00 5.28
474 475 1.809619 CACACGCACATCCTACCCG 60.810 63.158 0.00 0.00 0.00 5.28
475 476 0.533491 TACACACGCACATCCTACCC 59.467 55.000 0.00 0.00 0.00 3.69
476 477 1.067425 TGTACACACGCACATCCTACC 60.067 52.381 0.00 0.00 0.00 3.18
477 478 2.357327 TGTACACACGCACATCCTAC 57.643 50.000 0.00 0.00 0.00 3.18
478 479 3.056465 TGAATGTACACACGCACATCCTA 60.056 43.478 0.00 0.00 34.32 2.94
479 480 2.289382 TGAATGTACACACGCACATCCT 60.289 45.455 0.00 0.00 34.32 3.24
480 481 2.073056 TGAATGTACACACGCACATCC 58.927 47.619 0.00 0.00 34.32 3.51
481 482 4.803613 TCTATGAATGTACACACGCACATC 59.196 41.667 0.00 0.00 34.32 3.06
482 483 4.754322 TCTATGAATGTACACACGCACAT 58.246 39.130 0.00 1.10 36.96 3.21
483 484 4.181309 TCTATGAATGTACACACGCACA 57.819 40.909 0.00 0.00 0.00 4.57
484 485 4.566759 ACATCTATGAATGTACACACGCAC 59.433 41.667 0.00 0.00 38.09 5.34
485 486 4.566360 CACATCTATGAATGTACACACGCA 59.434 41.667 0.00 0.00 37.78 5.24
486 487 4.803613 TCACATCTATGAATGTACACACGC 59.196 41.667 0.00 0.00 37.78 5.34
487 488 6.020360 CACTCACATCTATGAATGTACACACG 60.020 42.308 0.00 0.00 37.78 4.49
488 489 6.813649 ACACTCACATCTATGAATGTACACAC 59.186 38.462 0.00 0.00 37.78 3.82
489 490 6.935167 ACACTCACATCTATGAATGTACACA 58.065 36.000 0.00 0.00 37.78 3.72
490 491 8.972349 CATACACTCACATCTATGAATGTACAC 58.028 37.037 0.00 0.00 37.78 2.90
491 492 7.653311 GCATACACTCACATCTATGAATGTACA 59.347 37.037 0.00 0.00 37.78 2.90
492 493 7.148902 CGCATACACTCACATCTATGAATGTAC 60.149 40.741 0.00 0.00 37.78 2.90
493 494 6.863126 CGCATACACTCACATCTATGAATGTA 59.137 38.462 0.20 0.20 37.78 2.29
494 495 5.693555 CGCATACACTCACATCTATGAATGT 59.306 40.000 0.00 0.00 40.49 2.71
495 496 5.389202 GCGCATACACTCACATCTATGAATG 60.389 44.000 0.30 0.00 0.00 2.67
496 497 4.687948 GCGCATACACTCACATCTATGAAT 59.312 41.667 0.30 0.00 0.00 2.57
497 498 4.051237 GCGCATACACTCACATCTATGAA 58.949 43.478 0.30 0.00 0.00 2.57
498 499 3.642705 GCGCATACACTCACATCTATGA 58.357 45.455 0.30 0.00 0.00 2.15
499 500 2.406357 CGCGCATACACTCACATCTATG 59.594 50.000 8.75 0.00 0.00 2.23
500 501 2.034685 ACGCGCATACACTCACATCTAT 59.965 45.455 5.73 0.00 0.00 1.98
501 502 1.404035 ACGCGCATACACTCACATCTA 59.596 47.619 5.73 0.00 0.00 1.98
502 503 0.173481 ACGCGCATACACTCACATCT 59.827 50.000 5.73 0.00 0.00 2.90
503 504 0.298707 CACGCGCATACACTCACATC 59.701 55.000 5.73 0.00 0.00 3.06
504 505 0.389817 ACACGCGCATACACTCACAT 60.390 50.000 5.73 0.00 0.00 3.21
505 506 0.241481 TACACGCGCATACACTCACA 59.759 50.000 5.73 0.00 0.00 3.58
506 507 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
507 508 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
508 509 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
509 510 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
510 511 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
511 512 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
512 513 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
513 514 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
514 515 1.008875 CCGCTCATATACACGCGCAT 61.009 55.000 5.73 0.00 43.84 4.73
515 516 1.660264 CCGCTCATATACACGCGCA 60.660 57.895 5.73 0.00 43.84 6.09
516 517 1.213094 AACCGCTCATATACACGCGC 61.213 55.000 5.73 0.00 43.84 6.86
517 518 0.502695 CAACCGCTCATATACACGCG 59.497 55.000 3.53 3.53 44.69 6.01
518 519 0.232303 GCAACCGCTCATATACACGC 59.768 55.000 0.00 0.00 34.30 5.34
519 520 1.566404 TGCAACCGCTCATATACACG 58.434 50.000 0.00 0.00 39.64 4.49
520 521 3.393800 AGATGCAACCGCTCATATACAC 58.606 45.455 0.00 0.00 39.64 2.90
521 522 3.751479 AGATGCAACCGCTCATATACA 57.249 42.857 0.00 0.00 39.64 2.29
522 523 6.565234 AGTATAGATGCAACCGCTCATATAC 58.435 40.000 0.00 0.00 39.64 1.47
523 524 6.775594 AGTATAGATGCAACCGCTCATATA 57.224 37.500 0.00 0.00 39.64 0.86
524 525 5.667539 AGTATAGATGCAACCGCTCATAT 57.332 39.130 0.00 0.00 39.64 1.78
525 526 6.152831 ACATAGTATAGATGCAACCGCTCATA 59.847 38.462 0.00 0.00 39.64 2.15
526 527 5.047021 ACATAGTATAGATGCAACCGCTCAT 60.047 40.000 0.00 0.00 39.64 2.90
527 528 4.280929 ACATAGTATAGATGCAACCGCTCA 59.719 41.667 0.00 0.00 39.64 4.26
528 529 4.810790 ACATAGTATAGATGCAACCGCTC 58.189 43.478 0.00 0.00 39.64 5.03
529 530 4.873746 ACATAGTATAGATGCAACCGCT 57.126 40.909 0.00 0.00 39.64 5.52
530 531 7.416154 TTTAACATAGTATAGATGCAACCGC 57.584 36.000 0.00 0.00 39.24 5.68
555 556 7.856145 TTTGTTGAATTATGTGGCAGTTTTT 57.144 28.000 0.00 0.00 0.00 1.94
606 607 9.658799 ATTGATAAGTCGATCTTCTTTCTTCAA 57.341 29.630 3.94 10.65 37.56 2.69
608 609 9.307121 TGATTGATAAGTCGATCTTCTTTCTTC 57.693 33.333 3.94 2.77 43.13 2.87
609 610 9.829507 ATGATTGATAAGTCGATCTTCTTTCTT 57.170 29.630 3.94 0.00 43.13 2.52
611 612 9.861138 CAATGATTGATAAGTCGATCTTCTTTC 57.139 33.333 0.00 2.64 43.13 2.62
612 613 9.388506 ACAATGATTGATAAGTCGATCTTCTTT 57.611 29.630 12.80 0.00 43.13 2.52
615 616 8.136057 ACACAATGATTGATAAGTCGATCTTC 57.864 34.615 12.80 0.00 43.13 2.87
619 709 8.893219 ATGTACACAATGATTGATAAGTCGAT 57.107 30.769 12.80 0.00 0.00 3.59
639 730 6.977502 TCGAGCCGAGAGTATATAGTATGTAC 59.022 42.308 8.59 8.59 0.00 2.90
674 765 0.240945 ATACAAAGCACAACGCCTGC 59.759 50.000 0.00 0.00 44.04 4.85
677 768 2.095372 GTCCTATACAAAGCACAACGCC 59.905 50.000 0.00 0.00 44.04 5.68
717 812 1.616865 CGTCAACTTGTCTAGTCCCCA 59.383 52.381 0.00 0.00 35.54 4.96
722 817 2.557490 GGACCTCGTCAACTTGTCTAGT 59.443 50.000 0.00 0.00 39.32 2.57
725 820 1.705873 AGGACCTCGTCAACTTGTCT 58.294 50.000 0.00 0.00 33.68 3.41
726 821 3.655276 TTAGGACCTCGTCAACTTGTC 57.345 47.619 0.00 0.00 33.68 3.18
727 822 4.411256 TTTTAGGACCTCGTCAACTTGT 57.589 40.909 0.00 0.00 33.68 3.16
748 843 1.329599 GGCTCGTCAACGTGTCTTTTT 59.670 47.619 2.09 0.00 40.80 1.94
749 844 0.935196 GGCTCGTCAACGTGTCTTTT 59.065 50.000 2.09 0.00 40.80 2.27
750 845 0.179094 TGGCTCGTCAACGTGTCTTT 60.179 50.000 10.08 0.00 38.17 2.52
751 846 0.033504 ATGGCTCGTCAACGTGTCTT 59.966 50.000 10.08 2.01 38.17 3.01
804 899 2.513666 GTGCCGCATTCATCGGGA 60.514 61.111 0.00 0.00 46.51 5.14
1080 1215 2.265739 GTCTGCGACTCCATGGCA 59.734 61.111 6.96 0.00 40.13 4.92
1338 1474 0.250234 CAGCCAGGATGAGGTCGAAA 59.750 55.000 0.00 0.00 39.69 3.46
1374 1510 3.371965 AGTAAGGTCGAGCAATCCCTTA 58.628 45.455 18.15 11.29 38.27 2.69
1410 1552 4.323028 GGAGTCTTGTCCTTGATCATGTCA 60.323 45.833 0.00 0.00 33.30 3.58
1479 1621 1.152652 GATCTCCGCCTCCTCCTCA 60.153 63.158 0.00 0.00 0.00 3.86
1592 2315 4.032445 GCGCTGAAACGTAGACATATGAAA 59.968 41.667 10.38 0.00 34.88 2.69
1596 2327 3.116300 CAGCGCTGAAACGTAGACATAT 58.884 45.455 33.66 0.00 34.88 1.78
1687 2433 6.327626 ACAAGTAATGACTACCATCATAGGCT 59.672 38.462 0.00 0.00 38.40 4.58
1688 2434 6.425114 CACAAGTAATGACTACCATCATAGGC 59.575 42.308 0.00 0.00 38.40 3.93
1689 2435 7.726216 TCACAAGTAATGACTACCATCATAGG 58.274 38.462 0.00 0.00 38.40 2.57
1690 2436 9.599866 TTTCACAAGTAATGACTACCATCATAG 57.400 33.333 0.00 0.00 38.40 2.23
1692 2438 8.103305 AGTTTCACAAGTAATGACTACCATCAT 58.897 33.333 0.00 0.00 41.20 2.45
1693 2439 7.387673 CAGTTTCACAAGTAATGACTACCATCA 59.612 37.037 0.00 0.00 33.58 3.07
1694 2440 7.387948 ACAGTTTCACAAGTAATGACTACCATC 59.612 37.037 0.00 0.00 33.58 3.51
1695 2441 7.224297 ACAGTTTCACAAGTAATGACTACCAT 58.776 34.615 0.00 0.00 33.58 3.55
1696 2442 6.588204 ACAGTTTCACAAGTAATGACTACCA 58.412 36.000 0.00 0.00 33.58 3.25
1697 2443 8.773404 ATACAGTTTCACAAGTAATGACTACC 57.227 34.615 0.00 0.00 33.58 3.18
1700 2448 8.677148 ACAATACAGTTTCACAAGTAATGACT 57.323 30.769 0.00 0.00 37.59 3.41
1720 2468 7.120579 AGCGAAACATCCACTCAAATAACAATA 59.879 33.333 0.00 0.00 0.00 1.90
1725 2473 5.335583 CCAAGCGAAACATCCACTCAAATAA 60.336 40.000 0.00 0.00 0.00 1.40
1730 2478 1.202758 ACCAAGCGAAACATCCACTCA 60.203 47.619 0.00 0.00 0.00 3.41
1731 2479 1.523758 ACCAAGCGAAACATCCACTC 58.476 50.000 0.00 0.00 0.00 3.51
1775 2531 3.347958 TTTGTTCATCTGAAACCACGC 57.652 42.857 0.00 0.00 35.58 5.34
1837 2594 5.811613 TGTCTCTGGTTGCTTTCAATTTTTG 59.188 36.000 0.00 0.00 34.29 2.44
1842 2599 4.586001 ACATTGTCTCTGGTTGCTTTCAAT 59.414 37.500 0.00 0.00 34.29 2.57
1844 2601 3.554934 ACATTGTCTCTGGTTGCTTTCA 58.445 40.909 0.00 0.00 0.00 2.69
1845 2602 4.036734 TCAACATTGTCTCTGGTTGCTTTC 59.963 41.667 0.00 0.00 40.20 2.62
1850 2607 8.517878 AGAAAATATCAACATTGTCTCTGGTTG 58.482 33.333 0.00 0.00 41.39 3.77
1900 2673 7.334671 GGAGAAACATAGTTGTAGAAAGGGAAG 59.665 40.741 0.00 0.00 34.06 3.46
2018 5088 9.619316 ATTTGAAAAACATCAATCATGCATTTG 57.381 25.926 0.00 0.00 38.98 2.32
2061 5131 9.980780 CACGAAAAATGTATACAATGTGTATGA 57.019 29.630 10.14 0.00 42.93 2.15
2109 5181 8.344098 CAAGCATTTCCAAAATGTTAAATGTGT 58.656 29.630 12.53 0.00 40.05 3.72
2159 5231 7.713764 AGTCAGGCATTTGAAAAATGTTAAC 57.286 32.000 12.82 0.00 0.00 2.01
2166 5238 8.729805 AAATTGTTAGTCAGGCATTTGAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
2276 5349 7.140705 TGACAAGTGTTAATCAAGCATTTGAG 58.859 34.615 0.00 0.00 45.89 3.02
2378 5452 1.521006 GTTTCCGCTTTCCGCTTTTTG 59.479 47.619 0.00 0.00 36.13 2.44
2384 5458 1.562017 TTTTTGTTTCCGCTTTCCGC 58.438 45.000 0.00 0.00 35.03 5.54
2405 5479 8.355913 CAGCCTCATTTTCTTCTAGTTTTTCTT 58.644 33.333 0.00 0.00 0.00 2.52
2407 5481 7.592903 CACAGCCTCATTTTCTTCTAGTTTTTC 59.407 37.037 0.00 0.00 0.00 2.29
2408 5482 7.428826 CACAGCCTCATTTTCTTCTAGTTTTT 58.571 34.615 0.00 0.00 0.00 1.94
2413 5488 3.376546 GCCACAGCCTCATTTTCTTCTAG 59.623 47.826 0.00 0.00 0.00 2.43
2414 5489 3.244875 TGCCACAGCCTCATTTTCTTCTA 60.245 43.478 0.00 0.00 38.69 2.10
2418 5493 2.226962 ATGCCACAGCCTCATTTTCT 57.773 45.000 0.00 0.00 38.69 2.52
2424 5499 1.152902 GCCATATGCCACAGCCTCA 60.153 57.895 0.00 0.00 38.69 3.86
2425 5500 3.755434 GCCATATGCCACAGCCTC 58.245 61.111 0.00 0.00 38.69 4.70
2434 5509 4.017877 GCACGCGAGGCCATATGC 62.018 66.667 15.93 5.54 40.16 3.14
2448 5523 2.598394 ATGGGGCGGCATATGCAC 60.598 61.111 28.07 18.96 44.36 4.57
2449 5524 2.282391 GATGGGGCGGCATATGCA 60.282 61.111 28.07 7.82 44.36 3.96
2453 5528 4.314440 GCGAGATGGGGCGGCATA 62.314 66.667 12.47 0.00 0.00 3.14
2457 5532 4.899239 GACTGCGAGATGGGGCGG 62.899 72.222 0.00 0.00 41.31 6.13
2485 5562 1.804372 CGTGAGATGTAAGGCAGCCTC 60.804 57.143 16.53 3.34 33.15 4.70
2506 5583 0.729116 CCTATGTCACGCTTGCCAAG 59.271 55.000 0.00 0.00 0.00 3.61
2507 5584 1.305219 GCCTATGTCACGCTTGCCAA 61.305 55.000 0.00 0.00 0.00 4.52
2508 5585 1.745115 GCCTATGTCACGCTTGCCA 60.745 57.895 0.00 0.00 0.00 4.92
2509 5586 2.813179 CGCCTATGTCACGCTTGCC 61.813 63.158 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.