Multiple sequence alignment - TraesCS7B01G098500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G098500 chr7B 100.000 5277 0 0 1 5277 113158797 113164073 0.000000e+00 9745.0
1 TraesCS7B01G098500 chr7B 77.983 813 120 41 2708 3503 201499271 201498501 6.230000e-124 455.0
2 TraesCS7B01G098500 chr7B 89.320 309 26 7 3686 3992 113162331 113162634 1.070000e-101 381.0
3 TraesCS7B01G098500 chr7B 89.320 309 26 7 3535 3838 113162482 113162788 1.070000e-101 381.0
4 TraesCS7B01G098500 chr7B 88.785 107 11 1 1945 2050 201522427 201522321 4.290000e-26 130.0
5 TraesCS7B01G098500 chr7B 94.872 39 2 0 555 593 154540347 154540385 1.590000e-05 62.1
6 TraesCS7B01G098500 chr7A 93.389 3237 123 38 636 3838 150980859 150984038 0.000000e+00 4708.0
7 TraesCS7B01G098500 chr7A 93.369 1116 45 15 3686 4793 150983731 150984825 0.000000e+00 1624.0
8 TraesCS7B01G098500 chr7A 92.490 253 18 1 4818 5070 549395469 549395218 1.400000e-95 361.0
9 TraesCS7B01G098500 chr7A 83.251 406 46 17 2732 3127 243365211 243364818 2.340000e-93 353.0
10 TraesCS7B01G098500 chr7A 86.129 310 34 3 288 594 150979000 150979303 5.100000e-85 326.0
11 TraesCS7B01G098500 chr7A 92.818 181 12 1 5076 5256 150984829 150985008 1.460000e-65 261.0
12 TraesCS7B01G098500 chr7A 88.152 211 23 2 1 210 150938686 150938895 3.160000e-62 250.0
13 TraesCS7B01G098500 chr7A 96.591 88 2 1 4533 4619 33885897 33885810 1.530000e-30 145.0
14 TraesCS7B01G098500 chr7A 86.239 109 14 1 1943 2050 243365810 243365702 3.340000e-22 117.0
15 TraesCS7B01G098500 chr7D 94.021 2241 99 19 1616 3838 151270440 151272663 0.000000e+00 3363.0
16 TraesCS7B01G098500 chr7D 95.417 851 32 7 3686 4534 151272359 151273204 0.000000e+00 1349.0
17 TraesCS7B01G098500 chr7D 91.785 633 27 10 796 1409 151269738 151270364 0.000000e+00 857.0
18 TraesCS7B01G098500 chr7D 84.471 586 78 9 203 782 151268995 151269573 2.760000e-157 566.0
19 TraesCS7B01G098500 chr7D 77.011 957 146 55 2708 3639 230493126 230492219 1.030000e-131 481.0
20 TraesCS7B01G098500 chr7D 92.308 195 14 1 5084 5277 151273246 151273440 5.210000e-70 276.0
21 TraesCS7B01G098500 chr7D 92.222 180 11 3 41 219 151161351 151161528 8.770000e-63 252.0
22 TraesCS7B01G098500 chr7D 86.364 110 13 2 1943 2050 230493689 230493580 9.280000e-23 119.0
23 TraesCS7B01G098500 chr4B 94.039 671 36 2 120 787 403103848 403104517 0.000000e+00 1014.0
24 TraesCS7B01G098500 chr4B 95.935 123 5 0 1 123 403068793 403068915 3.220000e-47 200.0
25 TraesCS7B01G098500 chr4A 85.633 884 110 9 2291 3160 725940448 725939568 0.000000e+00 913.0
26 TraesCS7B01G098500 chr4A 86.596 664 80 7 1709 2367 725941398 725940739 0.000000e+00 725.0
27 TraesCS7B01G098500 chr4A 85.895 475 43 17 3838 4302 725939210 725938750 7.950000e-133 484.0
28 TraesCS7B01G098500 chr4A 84.756 492 36 16 3207 3663 725939561 725939074 1.730000e-124 457.0
29 TraesCS7B01G098500 chr4A 89.899 99 9 1 4522 4619 618462160 618462258 5.550000e-25 126.0
30 TraesCS7B01G098500 chr4A 100.000 28 0 0 567 594 363600135 363600162 1.000000e-02 52.8
31 TraesCS7B01G098500 chr6B 94.071 253 14 1 4818 5070 563531687 563531938 2.980000e-102 383.0
32 TraesCS7B01G098500 chr5A 93.651 252 13 3 4820 5070 554186615 554186864 1.790000e-99 374.0
33 TraesCS7B01G098500 chr5A 87.379 103 9 4 4525 4624 502665820 502665921 1.200000e-21 115.0
34 TraesCS7B01G098500 chr5D 92.913 254 16 2 4818 5070 558926601 558926349 8.350000e-98 368.0
35 TraesCS7B01G098500 chr5D 100.000 32 0 0 562 593 391875624 391875593 5.710000e-05 60.2
36 TraesCS7B01G098500 chr3B 92.885 253 16 2 4818 5070 779370297 779370547 3.000000e-97 366.0
37 TraesCS7B01G098500 chr3B 92.490 253 18 1 4818 5070 331237181 331237432 1.400000e-95 361.0
38 TraesCS7B01G098500 chr3B 89.796 98 6 4 4536 4632 121637122 121637028 7.180000e-24 122.0
39 TraesCS7B01G098500 chr6A 92.857 252 16 2 4820 5070 13418621 13418371 1.080000e-96 364.0
40 TraesCS7B01G098500 chr6A 95.294 85 3 1 4536 4619 356112330 356112246 3.320000e-27 134.0
41 TraesCS7B01G098500 chr5B 93.061 245 15 2 4818 5061 675950196 675950439 1.810000e-94 357.0
42 TraesCS7B01G098500 chr2A 91.473 258 21 1 4819 5076 485091707 485091451 2.340000e-93 353.0
43 TraesCS7B01G098500 chr1A 93.182 88 5 1 4534 4620 498666536 498666623 1.540000e-25 128.0
44 TraesCS7B01G098500 chr3D 93.023 86 5 1 4535 4619 26655327 26655412 2.000000e-24 124.0
45 TraesCS7B01G098500 chr3D 92.045 88 6 1 4533 4619 375182953 375182866 7.180000e-24 122.0
46 TraesCS7B01G098500 chr2D 97.368 38 1 0 557 594 500258181 500258144 1.230000e-06 65.8
47 TraesCS7B01G098500 chr2B 92.500 40 2 1 558 596 154842999 154843038 7.380000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G098500 chr7B 113158797 113164073 5276 False 3502.333333 9745 92.88000 1 5277 3 chr7B.!!$F2 5276
1 TraesCS7B01G098500 chr7B 201498501 201499271 770 True 455.000000 455 77.98300 2708 3503 1 chr7B.!!$R1 795
2 TraesCS7B01G098500 chr7A 150979000 150985008 6008 False 1729.750000 4708 91.42625 288 5256 4 chr7A.!!$F2 4968
3 TraesCS7B01G098500 chr7A 243364818 243365810 992 True 235.000000 353 84.74500 1943 3127 2 chr7A.!!$R3 1184
4 TraesCS7B01G098500 chr7D 151268995 151273440 4445 False 1282.200000 3363 91.60040 203 5277 5 chr7D.!!$F2 5074
5 TraesCS7B01G098500 chr7D 230492219 230493689 1470 True 300.000000 481 81.68750 1943 3639 2 chr7D.!!$R1 1696
6 TraesCS7B01G098500 chr4B 403103848 403104517 669 False 1014.000000 1014 94.03900 120 787 1 chr4B.!!$F2 667
7 TraesCS7B01G098500 chr4A 725938750 725941398 2648 True 644.750000 913 85.72000 1709 4302 4 chr4A.!!$R1 2593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 2529 0.107081 TTTCTCCTCCCGTGCGAAAA 59.893 50.000 0.00 0.0 0.00 2.29 F
1374 3078 0.033601 ACACTGGCACTGGGTTCAAA 60.034 50.000 0.00 0.0 42.68 2.69 F
1379 3083 1.327303 GGCACTGGGTTCAAATGTGA 58.673 50.000 0.00 0.0 0.00 3.58 F
2307 4030 1.733389 CGGTGTCTGATTTGCCAATGC 60.733 52.381 0.00 0.0 38.26 3.56 F
3305 5480 1.202557 TCGTACCGCCTGACAGTTTTT 60.203 47.619 0.93 0.0 0.00 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 3868 1.871080 CATGGCCATTACTCTCGTCC 58.129 55.000 17.92 0.0 0.00 4.79 R
2179 3896 2.294233 GCAGCAATCAAGTTTGTGAGGA 59.706 45.455 0.00 0.0 0.00 3.71 R
2372 4466 3.144506 CATAGACACATGCCCCATCTTC 58.855 50.000 0.00 0.0 0.00 2.87 R
3658 5848 1.071699 GCAACCTCAACTGTACCAGGA 59.928 52.381 0.00 0.0 35.51 3.86 R
4598 6799 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.140677 TGAACCAATTCATCAAATCAACAAAC 57.859 30.769 0.00 0.00 40.01 2.93
28 29 7.226325 TGAACCAATTCATCAAATCAACAAACC 59.774 33.333 0.00 0.00 40.01 3.27
29 30 6.590068 ACCAATTCATCAAATCAACAAACCA 58.410 32.000 0.00 0.00 0.00 3.67
30 31 7.052873 ACCAATTCATCAAATCAACAAACCAA 58.947 30.769 0.00 0.00 0.00 3.67
31 32 7.720515 ACCAATTCATCAAATCAACAAACCAAT 59.279 29.630 0.00 0.00 0.00 3.16
32 33 8.231837 CCAATTCATCAAATCAACAAACCAATC 58.768 33.333 0.00 0.00 0.00 2.67
33 34 8.775527 CAATTCATCAAATCAACAAACCAATCA 58.224 29.630 0.00 0.00 0.00 2.57
34 35 8.905660 ATTCATCAAATCAACAAACCAATCAA 57.094 26.923 0.00 0.00 0.00 2.57
35 36 8.905660 TTCATCAAATCAACAAACCAATCAAT 57.094 26.923 0.00 0.00 0.00 2.57
36 37 8.537049 TCATCAAATCAACAAACCAATCAATC 57.463 30.769 0.00 0.00 0.00 2.67
37 38 7.603404 TCATCAAATCAACAAACCAATCAATCC 59.397 33.333 0.00 0.00 0.00 3.01
38 39 6.824553 TCAAATCAACAAACCAATCAATCCA 58.175 32.000 0.00 0.00 0.00 3.41
39 40 7.451732 TCAAATCAACAAACCAATCAATCCAT 58.548 30.769 0.00 0.00 0.00 3.41
40 41 8.591940 TCAAATCAACAAACCAATCAATCCATA 58.408 29.630 0.00 0.00 0.00 2.74
41 42 9.217278 CAAATCAACAAACCAATCAATCCATAA 57.783 29.630 0.00 0.00 0.00 1.90
42 43 9.962809 AAATCAACAAACCAATCAATCCATAAT 57.037 25.926 0.00 0.00 0.00 1.28
43 44 9.962809 AATCAACAAACCAATCAATCCATAATT 57.037 25.926 0.00 0.00 0.00 1.40
46 47 9.874205 CAACAAACCAATCAATCCATAATTAGT 57.126 29.630 0.00 0.00 0.00 2.24
48 49 9.479549 ACAAACCAATCAATCCATAATTAGTCT 57.520 29.630 0.00 0.00 0.00 3.24
66 67 9.971922 AATTAGTCTAAATTATGATTTGCTGGC 57.028 29.630 5.75 0.00 36.22 4.85
67 68 8.752005 TTAGTCTAAATTATGATTTGCTGGCT 57.248 30.769 5.75 5.56 36.22 4.75
68 69 7.651027 AGTCTAAATTATGATTTGCTGGCTT 57.349 32.000 5.75 0.00 36.22 4.35
69 70 8.071177 AGTCTAAATTATGATTTGCTGGCTTT 57.929 30.769 5.75 0.00 36.22 3.51
70 71 8.534496 AGTCTAAATTATGATTTGCTGGCTTTT 58.466 29.630 5.75 0.00 36.22 2.27
71 72 8.598075 GTCTAAATTATGATTTGCTGGCTTTTG 58.402 33.333 5.75 0.00 36.22 2.44
72 73 6.746745 AAATTATGATTTGCTGGCTTTTGG 57.253 33.333 0.00 0.00 34.26 3.28
73 74 5.680594 ATTATGATTTGCTGGCTTTTGGA 57.319 34.783 0.00 0.00 0.00 3.53
74 75 5.680594 TTATGATTTGCTGGCTTTTGGAT 57.319 34.783 0.00 0.00 0.00 3.41
75 76 4.563140 ATGATTTGCTGGCTTTTGGATT 57.437 36.364 0.00 0.00 0.00 3.01
76 77 3.929094 TGATTTGCTGGCTTTTGGATTC 58.071 40.909 0.00 0.00 0.00 2.52
77 78 3.579586 TGATTTGCTGGCTTTTGGATTCT 59.420 39.130 0.00 0.00 0.00 2.40
78 79 4.771577 TGATTTGCTGGCTTTTGGATTCTA 59.228 37.500 0.00 0.00 0.00 2.10
79 80 5.245751 TGATTTGCTGGCTTTTGGATTCTAA 59.754 36.000 0.00 0.00 0.00 2.10
80 81 5.543507 TTTGCTGGCTTTTGGATTCTAAA 57.456 34.783 0.00 0.00 0.00 1.85
81 82 5.543507 TTGCTGGCTTTTGGATTCTAAAA 57.456 34.783 7.58 7.58 0.00 1.52
82 83 5.543507 TGCTGGCTTTTGGATTCTAAAAA 57.456 34.783 8.94 4.23 0.00 1.94
83 84 6.112927 TGCTGGCTTTTGGATTCTAAAAAT 57.887 33.333 8.94 0.00 0.00 1.82
84 85 7.238486 TGCTGGCTTTTGGATTCTAAAAATA 57.762 32.000 8.94 0.00 0.00 1.40
85 86 7.850193 TGCTGGCTTTTGGATTCTAAAAATAT 58.150 30.769 8.94 0.00 0.00 1.28
86 87 8.976353 TGCTGGCTTTTGGATTCTAAAAATATA 58.024 29.630 8.94 0.00 0.00 0.86
87 88 9.468532 GCTGGCTTTTGGATTCTAAAAATATAG 57.531 33.333 8.94 6.70 0.00 1.31
88 89 9.971922 CTGGCTTTTGGATTCTAAAAATATAGG 57.028 33.333 8.94 0.00 0.00 2.57
89 90 8.421002 TGGCTTTTGGATTCTAAAAATATAGGC 58.579 33.333 8.94 9.18 0.00 3.93
90 91 8.421002 GGCTTTTGGATTCTAAAAATATAGGCA 58.579 33.333 8.94 0.00 0.00 4.75
91 92 9.816354 GCTTTTGGATTCTAAAAATATAGGCAA 57.184 29.630 8.94 0.00 0.00 4.52
166 167 0.577269 GTACATTCGATCACCAGCGC 59.423 55.000 0.00 0.00 0.00 5.92
380 385 1.454539 CCAGGAAACCGAACTGGGT 59.545 57.895 0.00 0.00 46.24 4.51
518 523 3.563808 AGGCGAGCGCATATAATTTTTCA 59.436 39.130 17.16 0.00 44.11 2.69
548 556 3.332485 AGGTTTGCTTAGGTGGATGGTTA 59.668 43.478 0.00 0.00 0.00 2.85
573 581 7.058525 ACATGTTGATTGATGATGTGGATAGT 58.941 34.615 0.00 0.00 0.00 2.12
594 602 6.291648 AGTCTGCATGTCAAGAGAAATAGA 57.708 37.500 0.00 0.00 0.00 1.98
639 2161 2.672961 TTAGTGAAGATGGACGCCAG 57.327 50.000 4.90 0.00 36.75 4.85
641 2163 1.194781 AGTGAAGATGGACGCCAGGT 61.195 55.000 4.90 0.00 36.75 4.00
666 2188 0.250640 CCTTGAAGTGAGCACAGCCT 60.251 55.000 3.19 0.00 0.00 4.58
676 2199 4.455877 AGTGAGCACAGCCTGTTTATAAAC 59.544 41.667 19.44 19.44 39.33 2.01
777 2300 4.039852 GGTCTGGATAGAACTCCCTGAATC 59.960 50.000 0.00 0.00 37.67 2.52
787 2310 1.879380 CTCCCTGAATCACACGCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
833 2507 0.776080 TTTTTCCTCCCAGCCTCCCT 60.776 55.000 0.00 0.00 0.00 4.20
835 2509 2.415962 TTTCCTCCCAGCCTCCCTCA 62.416 60.000 0.00 0.00 0.00 3.86
850 2524 0.462759 CCTCATTTCTCCTCCCGTGC 60.463 60.000 0.00 0.00 0.00 5.34
851 2525 0.807667 CTCATTTCTCCTCCCGTGCG 60.808 60.000 0.00 0.00 0.00 5.34
852 2526 1.218047 CATTTCTCCTCCCGTGCGA 59.782 57.895 0.00 0.00 0.00 5.10
853 2527 0.391130 CATTTCTCCTCCCGTGCGAA 60.391 55.000 0.00 0.00 0.00 4.70
854 2528 0.323629 ATTTCTCCTCCCGTGCGAAA 59.676 50.000 0.00 0.00 0.00 3.46
855 2529 0.107081 TTTCTCCTCCCGTGCGAAAA 59.893 50.000 0.00 0.00 0.00 2.29
856 2530 0.601841 TTCTCCTCCCGTGCGAAAAC 60.602 55.000 0.00 0.00 0.00 2.43
857 2531 2.031465 TCCTCCCGTGCGAAAACC 59.969 61.111 0.00 0.00 0.00 3.27
858 2532 3.053896 CCTCCCGTGCGAAAACCC 61.054 66.667 0.00 0.00 0.00 4.11
859 2533 2.032071 CTCCCGTGCGAAAACCCT 59.968 61.111 0.00 0.00 0.00 4.34
905 2589 6.099125 GCTTCTCCTACCTTCCTTCTAGAAAT 59.901 42.308 6.63 0.00 0.00 2.17
983 2673 3.157949 CGCCCTCTCCTTCCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
1012 2702 3.047718 GCGACGATGGACGAGTGGA 62.048 63.158 0.00 0.00 45.77 4.02
1154 2844 2.683211 ATGCCAAACCTGACCTTCTT 57.317 45.000 0.00 0.00 0.00 2.52
1169 2859 3.515901 ACCTTCTTCTCGCATTCTACCTT 59.484 43.478 0.00 0.00 0.00 3.50
1262 2952 1.728971 CTGGCTTGAGTACGCTTTCAG 59.271 52.381 0.00 0.00 0.00 3.02
1283 2982 8.511604 TTCAGATTTTCCTGGAAGAATGATAC 57.488 34.615 9.42 2.25 34.07 2.24
1293 2992 5.745227 TGGAAGAATGATACTTGTCCCTTC 58.255 41.667 0.00 0.00 0.00 3.46
1296 2995 6.380079 AAGAATGATACTTGTCCCTTCTGT 57.620 37.500 0.00 0.00 0.00 3.41
1304 3003 2.992124 TGTCCCTTCTGTTTTGACGA 57.008 45.000 0.00 0.00 0.00 4.20
1356 3059 8.996271 ACCAATTTTGTAGTTAGCTGTAGTTAC 58.004 33.333 0.00 0.00 0.00 2.50
1361 3064 6.263516 TGTAGTTAGCTGTAGTTACACTGG 57.736 41.667 0.00 0.00 31.93 4.00
1374 3078 0.033601 ACACTGGCACTGGGTTCAAA 60.034 50.000 0.00 0.00 42.68 2.69
1379 3083 1.327303 GGCACTGGGTTCAAATGTGA 58.673 50.000 0.00 0.00 0.00 3.58
1430 3134 2.171237 AGTGGATCATGCGGAGAATTGA 59.829 45.455 0.00 0.00 0.00 2.57
1435 3139 3.452755 TCATGCGGAGAATTGACGTAT 57.547 42.857 0.00 0.00 33.34 3.06
1475 3179 4.799564 TTTGTGATGGGCTGGTAATTTC 57.200 40.909 0.00 0.00 0.00 2.17
1484 3188 3.066760 GGGCTGGTAATTTCGGAATTGAG 59.933 47.826 12.12 6.19 36.22 3.02
1486 3190 3.788797 GCTGGTAATTTCGGAATTGAGCG 60.789 47.826 12.12 0.00 36.22 5.03
1593 3297 6.736110 ACAAGTTGTAACAAGGTAGGAGTA 57.264 37.500 6.75 0.00 0.00 2.59
1611 3315 4.646492 GGAGTAATGCCCTGTTGATTCATT 59.354 41.667 0.00 0.00 0.00 2.57
1800 3510 7.792925 TCAAAAGTGTGACATTATTACTCGTG 58.207 34.615 0.00 0.00 0.00 4.35
1811 3521 8.644318 ACATTATTACTCGTGGTTAATGTCTC 57.356 34.615 12.30 0.00 37.31 3.36
1815 3525 4.602340 ACTCGTGGTTAATGTCTCAGTT 57.398 40.909 0.00 0.00 0.00 3.16
1868 3578 6.947644 ATGTCTTGCTGTATTCATTATGCA 57.052 33.333 0.00 0.00 0.00 3.96
1884 3594 8.220755 TCATTATGCATGTTTAGGTTTCTACC 57.779 34.615 10.16 0.00 38.19 3.18
1885 3595 7.831690 TCATTATGCATGTTTAGGTTTCTACCA 59.168 33.333 10.16 0.00 39.33 3.25
2070 3787 9.288576 CAGGTATCATTCCAATTATGTATGTGT 57.711 33.333 0.00 0.00 0.00 3.72
2100 3817 4.934356 TCTTTTGTGCATCCCCTTATCTT 58.066 39.130 0.00 0.00 0.00 2.40
2101 3818 4.949856 TCTTTTGTGCATCCCCTTATCTTC 59.050 41.667 0.00 0.00 0.00 2.87
2307 4030 1.733389 CGGTGTCTGATTTGCCAATGC 60.733 52.381 0.00 0.00 38.26 3.56
2352 4382 7.932491 TGACATTTGTGAATTGACATGGATTTT 59.068 29.630 0.00 0.00 0.00 1.82
2372 4466 8.773645 GGATTTTGGTTTTCTGATTTGGTAAAG 58.226 33.333 0.00 0.00 0.00 1.85
2419 4514 6.757010 ACTAACACCGAGAATGATGTTATGAC 59.243 38.462 0.00 0.00 37.03 3.06
2486 4584 9.226345 GCAATTTGTTCAGTAGCTTATAACATC 57.774 33.333 0.00 0.00 30.76 3.06
2541 4639 4.358214 TGGTCCCATACTGTTATCTGTCA 58.642 43.478 0.00 0.00 0.00 3.58
2719 4852 8.962884 ATCTTTTGGTTTTGTGCTAATTTTCT 57.037 26.923 0.00 0.00 0.00 2.52
2723 4858 8.825667 TTTGGTTTTGTGCTAATTTTCTATCC 57.174 30.769 0.00 0.00 0.00 2.59
3305 5480 1.202557 TCGTACCGCCTGACAGTTTTT 60.203 47.619 0.93 0.00 0.00 1.94
3328 5503 6.585695 TTCTTTAACTCTCACGACAGGTAT 57.414 37.500 0.00 0.00 0.00 2.73
3329 5504 7.692460 TTCTTTAACTCTCACGACAGGTATA 57.308 36.000 0.00 0.00 0.00 1.47
3536 5719 4.767928 TCTTGGGTTGGCGTGTTTAATAAT 59.232 37.500 0.00 0.00 0.00 1.28
3621 5811 9.650539 TTTGTGTATATTATGCTGCAAAAATGT 57.349 25.926 18.42 15.41 0.00 2.71
3622 5812 9.650539 TTGTGTATATTATGCTGCAAAAATGTT 57.349 25.926 18.42 11.15 0.00 2.71
3623 5813 9.650539 TGTGTATATTATGCTGCAAAAATGTTT 57.349 25.926 18.42 9.42 0.00 2.83
3630 5820 9.650539 ATTATGCTGCAAAAATGTTTACATACA 57.349 25.926 6.36 0.00 35.10 2.29
3631 5821 9.650539 TTATGCTGCAAAAATGTTTACATACAT 57.349 25.926 6.36 3.83 40.37 2.29
3632 5822 7.348808 TGCTGCAAAAATGTTTACATACATG 57.651 32.000 0.00 0.00 38.69 3.21
3633 5823 6.927936 TGCTGCAAAAATGTTTACATACATGT 59.072 30.769 2.69 2.69 44.48 3.21
3634 5824 8.084684 TGCTGCAAAAATGTTTACATACATGTA 58.915 29.630 8.27 8.27 41.97 2.29
3635 5825 9.086336 GCTGCAAAAATGTTTACATACATGTAT 57.914 29.630 12.75 12.75 42.32 2.29
3657 5847 9.936759 TGTATATTCTAATGCATATTTCCGTGA 57.063 29.630 0.00 0.00 0.00 4.35
3660 5850 6.801539 TTCTAATGCATATTTCCGTGATCC 57.198 37.500 0.00 0.00 0.00 3.36
3661 5851 6.114187 TCTAATGCATATTTCCGTGATCCT 57.886 37.500 0.00 0.00 0.00 3.24
3662 5852 5.934043 TCTAATGCATATTTCCGTGATCCTG 59.066 40.000 0.00 0.00 0.00 3.86
3663 5853 2.849942 TGCATATTTCCGTGATCCTGG 58.150 47.619 0.00 0.00 0.00 4.45
3664 5854 2.172505 TGCATATTTCCGTGATCCTGGT 59.827 45.455 0.00 0.00 0.00 4.00
3665 5855 3.389656 TGCATATTTCCGTGATCCTGGTA 59.610 43.478 0.00 0.00 0.00 3.25
3666 5856 3.746492 GCATATTTCCGTGATCCTGGTAC 59.254 47.826 0.00 0.00 0.00 3.34
3667 5857 4.742440 GCATATTTCCGTGATCCTGGTACA 60.742 45.833 0.00 0.00 0.00 2.90
3680 5870 2.543777 TGGTACAGTTGAGGTTGCTC 57.456 50.000 0.00 0.00 0.00 4.26
3681 5871 2.047061 TGGTACAGTTGAGGTTGCTCT 58.953 47.619 0.00 0.00 0.00 4.09
3682 5872 2.224281 TGGTACAGTTGAGGTTGCTCTG 60.224 50.000 0.00 0.00 0.00 3.35
3683 5873 2.224305 GGTACAGTTGAGGTTGCTCTGT 60.224 50.000 0.00 0.00 41.32 3.41
3684 5874 3.006537 GGTACAGTTGAGGTTGCTCTGTA 59.993 47.826 0.00 0.00 39.54 2.74
3685 5875 3.838244 ACAGTTGAGGTTGCTCTGTAA 57.162 42.857 0.00 0.00 37.55 2.41
3686 5876 4.150897 ACAGTTGAGGTTGCTCTGTAAA 57.849 40.909 0.00 0.00 37.55 2.01
3687 5877 4.718961 ACAGTTGAGGTTGCTCTGTAAAT 58.281 39.130 0.00 0.00 37.55 1.40
3688 5878 5.133221 ACAGTTGAGGTTGCTCTGTAAATT 58.867 37.500 0.00 0.00 37.55 1.82
3689 5879 5.239525 ACAGTTGAGGTTGCTCTGTAAATTC 59.760 40.000 0.00 0.00 37.55 2.17
3690 5880 5.471456 CAGTTGAGGTTGCTCTGTAAATTCT 59.529 40.000 0.00 0.00 0.00 2.40
3691 5881 5.471456 AGTTGAGGTTGCTCTGTAAATTCTG 59.529 40.000 0.00 0.00 0.00 3.02
3692 5882 4.973168 TGAGGTTGCTCTGTAAATTCTGT 58.027 39.130 0.00 0.00 0.00 3.41
3693 5883 4.756642 TGAGGTTGCTCTGTAAATTCTGTG 59.243 41.667 0.00 0.00 0.00 3.66
3694 5884 4.973168 AGGTTGCTCTGTAAATTCTGTGA 58.027 39.130 0.00 0.00 0.00 3.58
3695 5885 5.376625 AGGTTGCTCTGTAAATTCTGTGAA 58.623 37.500 0.00 0.00 0.00 3.18
3696 5886 6.006449 AGGTTGCTCTGTAAATTCTGTGAAT 58.994 36.000 0.00 0.00 0.00 2.57
3697 5887 6.491403 AGGTTGCTCTGTAAATTCTGTGAATT 59.509 34.615 0.25 0.25 0.00 2.17
3698 5888 7.665559 AGGTTGCTCTGTAAATTCTGTGAATTA 59.334 33.333 6.04 0.00 0.00 1.40
3699 5889 8.462016 GGTTGCTCTGTAAATTCTGTGAATTAT 58.538 33.333 6.04 1.30 0.00 1.28
3724 5914 9.877178 ATAATGTATTGGCTAGATTAGTACTGC 57.123 33.333 5.39 0.00 31.29 4.40
3725 5915 6.724893 TGTATTGGCTAGATTAGTACTGCA 57.275 37.500 5.39 0.00 0.00 4.41
3726 5916 7.119709 TGTATTGGCTAGATTAGTACTGCAA 57.880 36.000 5.39 0.00 0.00 4.08
3727 5917 6.984474 TGTATTGGCTAGATTAGTACTGCAAC 59.016 38.462 5.39 0.00 0.00 4.17
3728 5918 5.677319 TTGGCTAGATTAGTACTGCAACT 57.323 39.130 5.39 2.60 0.00 3.16
3729 5919 5.677319 TGGCTAGATTAGTACTGCAACTT 57.323 39.130 5.39 0.00 0.00 2.66
3730 5920 5.419542 TGGCTAGATTAGTACTGCAACTTG 58.580 41.667 5.39 2.59 0.00 3.16
3731 5921 5.186992 TGGCTAGATTAGTACTGCAACTTGA 59.813 40.000 5.39 0.00 0.00 3.02
3732 5922 6.106673 GGCTAGATTAGTACTGCAACTTGAA 58.893 40.000 5.39 0.00 0.00 2.69
3733 5923 6.763610 GGCTAGATTAGTACTGCAACTTGAAT 59.236 38.462 5.39 0.00 0.00 2.57
3734 5924 7.254590 GGCTAGATTAGTACTGCAACTTGAATG 60.255 40.741 5.39 0.00 0.00 2.67
3735 5925 7.278868 GCTAGATTAGTACTGCAACTTGAATGT 59.721 37.037 5.39 0.00 0.00 2.71
3736 5926 9.803315 CTAGATTAGTACTGCAACTTGAATGTA 57.197 33.333 5.39 0.00 0.00 2.29
3738 5928 9.672673 AGATTAGTACTGCAACTTGAATGTATT 57.327 29.630 5.39 0.00 0.00 1.89
3741 5931 7.510549 AGTACTGCAACTTGAATGTATTTGT 57.489 32.000 0.00 0.00 0.00 2.83
3742 5932 7.940850 AGTACTGCAACTTGAATGTATTTGTT 58.059 30.769 0.00 0.00 0.00 2.83
3743 5933 8.413229 AGTACTGCAACTTGAATGTATTTGTTT 58.587 29.630 0.00 0.00 0.00 2.83
3744 5934 7.467557 ACTGCAACTTGAATGTATTTGTTTG 57.532 32.000 0.00 0.00 0.00 2.93
3745 5935 7.041107 ACTGCAACTTGAATGTATTTGTTTGT 58.959 30.769 0.00 0.00 0.00 2.83
3746 5936 7.548780 ACTGCAACTTGAATGTATTTGTTTGTT 59.451 29.630 0.00 0.00 0.00 2.83
3747 5937 8.261492 TGCAACTTGAATGTATTTGTTTGTTT 57.739 26.923 0.00 0.00 0.00 2.83
3748 5938 8.725148 TGCAACTTGAATGTATTTGTTTGTTTT 58.275 25.926 0.00 0.00 0.00 2.43
3749 5939 9.553418 GCAACTTGAATGTATTTGTTTGTTTTT 57.447 25.926 0.00 0.00 0.00 1.94
3765 5955 8.920665 TGTTTGTTTTTGTGTATATTATGCTGC 58.079 29.630 0.00 0.00 0.00 5.25
3766 5956 8.920665 GTTTGTTTTTGTGTATATTATGCTGCA 58.079 29.630 4.13 4.13 0.00 4.41
3767 5957 9.481340 TTTGTTTTTGTGTATATTATGCTGCAA 57.519 25.926 6.36 0.00 0.00 4.08
3768 5958 9.481340 TTGTTTTTGTGTATATTATGCTGCAAA 57.519 25.926 6.36 3.01 0.00 3.68
3769 5959 9.481340 TGTTTTTGTGTATATTATGCTGCAAAA 57.519 25.926 6.36 15.79 33.23 2.44
3901 6091 7.493313 CAGCTTGAATGTATTCGTTTGTTTTC 58.507 34.615 0.00 0.00 39.62 2.29
3923 6113 6.618287 TCTGTGTATATTATGCTGCCAAAC 57.382 37.500 0.00 0.00 0.00 2.93
3926 6116 7.285172 TCTGTGTATATTATGCTGCCAAACAAT 59.715 33.333 0.00 0.00 0.00 2.71
3927 6117 7.201835 TGTGTATATTATGCTGCCAAACAATG 58.798 34.615 0.00 0.00 0.00 2.82
3928 6118 6.144402 GTGTATATTATGCTGCCAAACAATGC 59.856 38.462 0.00 0.00 0.00 3.56
3929 6119 3.613494 ATTATGCTGCCAAACAATGCA 57.387 38.095 0.00 0.00 34.34 3.96
3930 6120 3.613494 TTATGCTGCCAAACAATGCAT 57.387 38.095 0.00 0.00 41.55 3.96
3931 6121 1.732941 ATGCTGCCAAACAATGCATG 58.267 45.000 0.00 0.00 38.39 4.06
3932 6122 0.951525 TGCTGCCAAACAATGCATGC 60.952 50.000 11.82 11.82 36.79 4.06
3933 6123 0.672401 GCTGCCAAACAATGCATGCT 60.672 50.000 20.33 1.07 36.79 3.79
4037 6231 1.559682 TGAGGGAGCATAACAGAACCC 59.440 52.381 0.00 0.00 37.79 4.11
4120 6315 2.814336 GGAATCAAGGAACGCCATATCC 59.186 50.000 0.00 0.00 36.29 2.59
4123 6318 2.398588 TCAAGGAACGCCATATCCTCT 58.601 47.619 0.00 0.00 45.33 3.69
4146 6341 3.185330 CTGACATCAGTGATGAAGTCCG 58.815 50.000 34.38 16.83 42.09 4.79
4416 6613 6.248569 TCCCTCCCATTAAATCTACTGTTC 57.751 41.667 0.00 0.00 0.00 3.18
4479 6678 2.739292 CTTCTGACGAACGTTTGAGGA 58.261 47.619 22.34 12.75 0.00 3.71
4558 6757 2.563179 CTCCCTCCGTCCCACAATATAG 59.437 54.545 0.00 0.00 0.00 1.31
4559 6758 2.178325 TCCCTCCGTCCCACAATATAGA 59.822 50.000 0.00 0.00 0.00 1.98
4560 6759 2.299297 CCCTCCGTCCCACAATATAGAC 59.701 54.545 0.00 0.00 0.00 2.59
4562 6761 3.231818 CTCCGTCCCACAATATAGACCT 58.768 50.000 0.00 0.00 0.00 3.85
4563 6762 3.641906 CTCCGTCCCACAATATAGACCTT 59.358 47.826 0.00 0.00 0.00 3.50
4564 6763 3.640029 TCCGTCCCACAATATAGACCTTC 59.360 47.826 0.00 0.00 0.00 3.46
4598 6799 8.885494 TGTTTTAGCTTGCAAAAACATCTTAT 57.115 26.923 18.58 0.00 45.66 1.73
4607 6808 7.473735 TGCAAAAACATCTTATATTGTGGGA 57.526 32.000 0.00 0.00 0.00 4.37
4637 6838 7.122799 AGGGAGTAGGTTTTATTTCATTCTTGC 59.877 37.037 0.00 0.00 0.00 4.01
4646 6847 3.366052 TTTCATTCTTGCCCCTAGTCC 57.634 47.619 0.00 0.00 0.00 3.85
4648 6849 0.179045 CATTCTTGCCCCTAGTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
4650 6851 0.838987 TTCTTGCCCCTAGTCCCGTT 60.839 55.000 0.00 0.00 0.00 4.44
4651 6852 0.838987 TCTTGCCCCTAGTCCCGTTT 60.839 55.000 0.00 0.00 0.00 3.60
4694 6895 0.445436 CAGCTCGATGGTGTTCTTGC 59.555 55.000 6.07 0.00 39.17 4.01
4695 6896 0.674895 AGCTCGATGGTGTTCTTGCC 60.675 55.000 0.00 0.00 0.00 4.52
4696 6897 1.970917 GCTCGATGGTGTTCTTGCCG 61.971 60.000 0.00 0.00 0.00 5.69
4697 6898 0.389817 CTCGATGGTGTTCTTGCCGA 60.390 55.000 0.00 0.00 0.00 5.54
4698 6899 0.249120 TCGATGGTGTTCTTGCCGAT 59.751 50.000 0.00 0.00 0.00 4.18
4699 6900 1.086696 CGATGGTGTTCTTGCCGATT 58.913 50.000 0.00 0.00 0.00 3.34
4700 6901 1.062587 CGATGGTGTTCTTGCCGATTC 59.937 52.381 0.00 0.00 0.00 2.52
4701 6902 2.359900 GATGGTGTTCTTGCCGATTCT 58.640 47.619 0.00 0.00 0.00 2.40
4714 6915 1.611673 CCGATTCTTTGTGTGCCTCCT 60.612 52.381 0.00 0.00 0.00 3.69
4722 6923 1.937191 TGTGTGCCTCCTAGTCATCA 58.063 50.000 0.00 0.00 0.00 3.07
4750 6951 9.840427 AATTAAAGAACAAATAGGTGTGAATCG 57.160 29.630 0.00 0.00 0.00 3.34
4800 7001 6.121613 ACTTGCGAGTCATCTAAGTACTAC 57.878 41.667 0.00 0.00 32.23 2.73
4801 7002 5.881443 ACTTGCGAGTCATCTAAGTACTACT 59.119 40.000 0.00 0.00 32.23 2.57
4802 7003 5.987777 TGCGAGTCATCTAAGTACTACTC 57.012 43.478 10.09 10.09 0.00 2.59
4803 7004 4.815308 TGCGAGTCATCTAAGTACTACTCC 59.185 45.833 13.20 8.35 31.74 3.85
4804 7005 4.213906 GCGAGTCATCTAAGTACTACTCCC 59.786 50.000 13.20 3.71 31.74 4.30
4805 7006 5.613329 CGAGTCATCTAAGTACTACTCCCT 58.387 45.833 13.20 0.00 31.74 4.20
4806 7007 5.697633 CGAGTCATCTAAGTACTACTCCCTC 59.302 48.000 13.20 5.62 31.74 4.30
4807 7008 5.944135 AGTCATCTAAGTACTACTCCCTCC 58.056 45.833 0.00 0.00 0.00 4.30
4808 7009 4.756135 GTCATCTAAGTACTACTCCCTCCG 59.244 50.000 0.00 0.00 0.00 4.63
4809 7010 4.411540 TCATCTAAGTACTACTCCCTCCGT 59.588 45.833 0.00 0.00 0.00 4.69
4810 7011 4.851639 TCTAAGTACTACTCCCTCCGTT 57.148 45.455 0.00 0.00 0.00 4.44
4811 7012 5.184892 TCTAAGTACTACTCCCTCCGTTT 57.815 43.478 0.00 0.00 0.00 3.60
4812 7013 5.574188 TCTAAGTACTACTCCCTCCGTTTT 58.426 41.667 0.00 0.00 0.00 2.43
4813 7014 6.012745 TCTAAGTACTACTCCCTCCGTTTTT 58.987 40.000 0.00 0.00 0.00 1.94
4814 7015 7.175104 TCTAAGTACTACTCCCTCCGTTTTTA 58.825 38.462 0.00 0.00 0.00 1.52
4815 7016 6.864151 AAGTACTACTCCCTCCGTTTTTAT 57.136 37.500 0.00 0.00 0.00 1.40
4816 7017 6.864151 AGTACTACTCCCTCCGTTTTTATT 57.136 37.500 0.00 0.00 0.00 1.40
4817 7018 6.871844 AGTACTACTCCCTCCGTTTTTATTC 58.128 40.000 0.00 0.00 0.00 1.75
4818 7019 4.752146 ACTACTCCCTCCGTTTTTATTCG 58.248 43.478 0.00 0.00 0.00 3.34
4819 7020 3.690475 ACTCCCTCCGTTTTTATTCGT 57.310 42.857 0.00 0.00 0.00 3.85
4820 7021 4.011966 ACTCCCTCCGTTTTTATTCGTT 57.988 40.909 0.00 0.00 0.00 3.85
4821 7022 4.392047 ACTCCCTCCGTTTTTATTCGTTT 58.608 39.130 0.00 0.00 0.00 3.60
4822 7023 4.823442 ACTCCCTCCGTTTTTATTCGTTTT 59.177 37.500 0.00 0.00 0.00 2.43
4823 7024 5.300034 ACTCCCTCCGTTTTTATTCGTTTTT 59.700 36.000 0.00 0.00 0.00 1.94
4824 7025 6.486320 ACTCCCTCCGTTTTTATTCGTTTTTA 59.514 34.615 0.00 0.00 0.00 1.52
4825 7026 7.175467 ACTCCCTCCGTTTTTATTCGTTTTTAT 59.825 33.333 0.00 0.00 0.00 1.40
4826 7027 7.884257 TCCCTCCGTTTTTATTCGTTTTTATT 58.116 30.769 0.00 0.00 0.00 1.40
4827 7028 8.358895 TCCCTCCGTTTTTATTCGTTTTTATTT 58.641 29.630 0.00 0.00 0.00 1.40
4828 7029 9.623350 CCCTCCGTTTTTATTCGTTTTTATTTA 57.377 29.630 0.00 0.00 0.00 1.40
4834 7035 9.927324 GTTTTTATTCGTTTTTATTTACTCCGC 57.073 29.630 0.00 0.00 0.00 5.54
4835 7036 9.674824 TTTTTATTCGTTTTTATTTACTCCGCA 57.325 25.926 0.00 0.00 0.00 5.69
4836 7037 9.843334 TTTTATTCGTTTTTATTTACTCCGCAT 57.157 25.926 0.00 0.00 0.00 4.73
4842 7043 9.531942 TCGTTTTTATTTACTCCGCATATTAGA 57.468 29.630 0.00 0.00 0.00 2.10
4843 7044 9.793245 CGTTTTTATTTACTCCGCATATTAGAG 57.207 33.333 0.00 0.00 0.00 2.43
4848 7049 7.948278 ATTTACTCCGCATATTAGAGTTGAC 57.052 36.000 4.78 0.00 41.09 3.18
4849 7050 6.710597 TTACTCCGCATATTAGAGTTGACT 57.289 37.500 4.78 0.00 41.09 3.41
4850 7051 7.812690 TTACTCCGCATATTAGAGTTGACTA 57.187 36.000 4.78 0.00 41.09 2.59
4851 7052 6.710597 ACTCCGCATATTAGAGTTGACTAA 57.289 37.500 0.00 0.00 37.60 2.24
4852 7053 7.108841 ACTCCGCATATTAGAGTTGACTAAA 57.891 36.000 0.00 0.00 37.60 1.85
4853 7054 7.203910 ACTCCGCATATTAGAGTTGACTAAAG 58.796 38.462 0.00 0.00 37.60 1.85
4854 7055 7.108841 TCCGCATATTAGAGTTGACTAAAGT 57.891 36.000 0.00 0.00 36.23 2.66
4855 7056 7.201145 TCCGCATATTAGAGTTGACTAAAGTC 58.799 38.462 3.08 3.08 44.97 3.01
4878 7079 7.889873 TCAAACTTTCTAAAGATTGACCCAA 57.110 32.000 18.60 3.17 46.23 4.12
4879 7080 7.940850 TCAAACTTTCTAAAGATTGACCCAAG 58.059 34.615 18.60 0.00 46.23 3.61
4880 7081 7.559897 TCAAACTTTCTAAAGATTGACCCAAGT 59.440 33.333 18.60 0.00 46.23 3.16
4881 7082 7.898014 AACTTTCTAAAGATTGACCCAAGTT 57.102 32.000 9.37 0.00 39.31 2.66
4882 7083 7.898014 ACTTTCTAAAGATTGACCCAAGTTT 57.102 32.000 9.37 0.00 39.31 2.66
4883 7084 8.990163 ACTTTCTAAAGATTGACCCAAGTTTA 57.010 30.769 9.37 0.00 39.31 2.01
4884 7085 9.588096 ACTTTCTAAAGATTGACCCAAGTTTAT 57.412 29.630 9.37 0.00 39.31 1.40
4947 7148 9.631257 ATGATGTGGAAGTACATTTGATAATGA 57.369 29.630 4.99 0.00 43.12 2.57
4948 7149 9.460019 TGATGTGGAAGTACATTTGATAATGAA 57.540 29.630 4.99 0.00 43.12 2.57
4951 7152 9.685276 TGTGGAAGTACATTTGATAATGAATCT 57.315 29.630 4.99 0.00 43.12 2.40
5049 7250 7.624360 TTTGATCAAAAGTAATATGCGGAGT 57.376 32.000 18.45 0.00 0.00 3.85
5050 7251 8.725405 TTTGATCAAAAGTAATATGCGGAGTA 57.275 30.769 18.45 0.00 0.00 2.59
5051 7252 8.725405 TTGATCAAAAGTAATATGCGGAGTAA 57.275 30.769 5.45 0.00 0.00 2.24
5052 7253 8.725405 TGATCAAAAGTAATATGCGGAGTAAA 57.275 30.769 0.00 0.00 0.00 2.01
5053 7254 9.337396 TGATCAAAAGTAATATGCGGAGTAAAT 57.663 29.630 0.00 0.00 0.00 1.40
5060 7261 9.925268 AAGTAATATGCGGAGTAAATAAAAACG 57.075 29.630 0.00 0.00 0.00 3.60
5061 7262 8.553696 AGTAATATGCGGAGTAAATAAAAACGG 58.446 33.333 0.00 0.00 0.00 4.44
5062 7263 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
5063 7264 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
5064 7265 4.567971 TGCGGAGTAAATAAAAACGGAGA 58.432 39.130 0.00 0.00 0.00 3.71
5065 7266 4.628333 TGCGGAGTAAATAAAAACGGAGAG 59.372 41.667 0.00 0.00 0.00 3.20
5066 7267 4.866486 GCGGAGTAAATAAAAACGGAGAGA 59.134 41.667 0.00 0.00 0.00 3.10
5067 7268 5.005490 GCGGAGTAAATAAAAACGGAGAGAG 59.995 44.000 0.00 0.00 0.00 3.20
5068 7269 6.098017 CGGAGTAAATAAAAACGGAGAGAGT 58.902 40.000 0.00 0.00 0.00 3.24
5069 7270 7.253422 CGGAGTAAATAAAAACGGAGAGAGTA 58.747 38.462 0.00 0.00 0.00 2.59
5070 7271 7.431668 CGGAGTAAATAAAAACGGAGAGAGTAG 59.568 40.741 0.00 0.00 0.00 2.57
5071 7272 8.465201 GGAGTAAATAAAAACGGAGAGAGTAGA 58.535 37.037 0.00 0.00 0.00 2.59
5072 7273 9.505995 GAGTAAATAAAAACGGAGAGAGTAGAG 57.494 37.037 0.00 0.00 0.00 2.43
5073 7274 9.022884 AGTAAATAAAAACGGAGAGAGTAGAGT 57.977 33.333 0.00 0.00 0.00 3.24
5095 7296 3.204526 AGCTAATTTAGAGCAGCTGCAG 58.795 45.455 38.24 24.72 42.60 4.41
5128 7329 4.406456 TCAGAATTGTATGGTGTGGCTTT 58.594 39.130 0.00 0.00 0.00 3.51
5181 7382 7.168219 TGTGGAAAGTTATGCTCTTGAACTAT 58.832 34.615 0.00 0.00 33.13 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.226325 TGGTTTGTTGATTTGATGAATTGGTTC 59.774 33.333 0.00 0.00 34.85 3.62
4 5 7.052873 TGGTTTGTTGATTTGATGAATTGGTT 58.947 30.769 0.00 0.00 0.00 3.67
5 6 6.590068 TGGTTTGTTGATTTGATGAATTGGT 58.410 32.000 0.00 0.00 0.00 3.67
6 7 7.493743 TTGGTTTGTTGATTTGATGAATTGG 57.506 32.000 0.00 0.00 0.00 3.16
7 8 8.775527 TGATTGGTTTGTTGATTTGATGAATTG 58.224 29.630 0.00 0.00 0.00 2.32
8 9 8.905660 TGATTGGTTTGTTGATTTGATGAATT 57.094 26.923 0.00 0.00 0.00 2.17
9 10 8.905660 TTGATTGGTTTGTTGATTTGATGAAT 57.094 26.923 0.00 0.00 0.00 2.57
10 11 8.905660 ATTGATTGGTTTGTTGATTTGATGAA 57.094 26.923 0.00 0.00 0.00 2.57
11 12 7.603404 GGATTGATTGGTTTGTTGATTTGATGA 59.397 33.333 0.00 0.00 0.00 2.92
12 13 7.388224 TGGATTGATTGGTTTGTTGATTTGATG 59.612 33.333 0.00 0.00 0.00 3.07
13 14 7.451732 TGGATTGATTGGTTTGTTGATTTGAT 58.548 30.769 0.00 0.00 0.00 2.57
14 15 6.824553 TGGATTGATTGGTTTGTTGATTTGA 58.175 32.000 0.00 0.00 0.00 2.69
15 16 7.675962 ATGGATTGATTGGTTTGTTGATTTG 57.324 32.000 0.00 0.00 0.00 2.32
16 17 9.962809 ATTATGGATTGATTGGTTTGTTGATTT 57.037 25.926 0.00 0.00 0.00 2.17
17 18 9.962809 AATTATGGATTGATTGGTTTGTTGATT 57.037 25.926 0.00 0.00 0.00 2.57
20 21 9.874205 ACTAATTATGGATTGATTGGTTTGTTG 57.126 29.630 0.00 0.00 0.00 3.33
22 23 9.479549 AGACTAATTATGGATTGATTGGTTTGT 57.520 29.630 0.00 0.00 0.00 2.83
40 41 9.971922 GCCAGCAAATCATAATTTAGACTAATT 57.028 29.630 0.00 0.00 33.27 1.40
41 42 9.359653 AGCCAGCAAATCATAATTTAGACTAAT 57.640 29.630 0.00 0.00 33.27 1.73
42 43 8.752005 AGCCAGCAAATCATAATTTAGACTAA 57.248 30.769 0.00 0.00 33.27 2.24
43 44 8.752005 AAGCCAGCAAATCATAATTTAGACTA 57.248 30.769 0.00 0.00 33.27 2.59
44 45 7.651027 AAGCCAGCAAATCATAATTTAGACT 57.349 32.000 0.00 0.00 33.27 3.24
45 46 8.598075 CAAAAGCCAGCAAATCATAATTTAGAC 58.402 33.333 0.00 0.00 33.27 2.59
46 47 7.765360 CCAAAAGCCAGCAAATCATAATTTAGA 59.235 33.333 0.00 0.00 33.27 2.10
47 48 7.765360 TCCAAAAGCCAGCAAATCATAATTTAG 59.235 33.333 0.00 0.00 33.27 1.85
48 49 7.619050 TCCAAAAGCCAGCAAATCATAATTTA 58.381 30.769 0.00 0.00 33.27 1.40
49 50 6.474630 TCCAAAAGCCAGCAAATCATAATTT 58.525 32.000 0.00 0.00 35.43 1.82
50 51 6.052405 TCCAAAAGCCAGCAAATCATAATT 57.948 33.333 0.00 0.00 0.00 1.40
51 52 5.680594 TCCAAAAGCCAGCAAATCATAAT 57.319 34.783 0.00 0.00 0.00 1.28
52 53 5.680594 ATCCAAAAGCCAGCAAATCATAA 57.319 34.783 0.00 0.00 0.00 1.90
53 54 5.422970 AGAATCCAAAAGCCAGCAAATCATA 59.577 36.000 0.00 0.00 0.00 2.15
54 55 4.224370 AGAATCCAAAAGCCAGCAAATCAT 59.776 37.500 0.00 0.00 0.00 2.45
55 56 3.579586 AGAATCCAAAAGCCAGCAAATCA 59.420 39.130 0.00 0.00 0.00 2.57
56 57 4.198028 AGAATCCAAAAGCCAGCAAATC 57.802 40.909 0.00 0.00 0.00 2.17
57 58 5.743636 TTAGAATCCAAAAGCCAGCAAAT 57.256 34.783 0.00 0.00 0.00 2.32
58 59 5.543507 TTTAGAATCCAAAAGCCAGCAAA 57.456 34.783 0.00 0.00 0.00 3.68
59 60 5.543507 TTTTAGAATCCAAAAGCCAGCAA 57.456 34.783 0.00 0.00 0.00 3.91
60 61 5.543507 TTTTTAGAATCCAAAAGCCAGCA 57.456 34.783 0.00 0.00 0.00 4.41
61 62 9.468532 CTATATTTTTAGAATCCAAAAGCCAGC 57.531 33.333 0.00 0.00 0.00 4.85
62 63 9.971922 CCTATATTTTTAGAATCCAAAAGCCAG 57.028 33.333 0.00 0.00 0.00 4.85
63 64 8.421002 GCCTATATTTTTAGAATCCAAAAGCCA 58.579 33.333 0.00 0.00 0.00 4.75
64 65 8.421002 TGCCTATATTTTTAGAATCCAAAAGCC 58.579 33.333 0.00 0.00 0.00 4.35
65 66 9.816354 TTGCCTATATTTTTAGAATCCAAAAGC 57.184 29.630 0.00 0.00 0.00 3.51
107 108 4.764823 AGACCAACGAAGATATGGCAAAAA 59.235 37.500 0.00 0.00 37.77 1.94
108 109 4.331968 AGACCAACGAAGATATGGCAAAA 58.668 39.130 0.00 0.00 37.77 2.44
109 110 3.950397 AGACCAACGAAGATATGGCAAA 58.050 40.909 0.00 0.00 37.77 3.68
110 111 3.627395 AGACCAACGAAGATATGGCAA 57.373 42.857 0.00 0.00 37.77 4.52
111 112 3.492656 GCTAGACCAACGAAGATATGGCA 60.493 47.826 0.00 0.00 37.77 4.92
112 113 3.060602 GCTAGACCAACGAAGATATGGC 58.939 50.000 0.00 0.00 37.77 4.40
113 114 3.654414 GGCTAGACCAACGAAGATATGG 58.346 50.000 0.00 0.00 40.16 2.74
114 115 3.309388 CGGCTAGACCAACGAAGATATG 58.691 50.000 0.00 0.00 39.03 1.78
115 116 2.296471 CCGGCTAGACCAACGAAGATAT 59.704 50.000 0.00 0.00 39.03 1.63
116 117 1.679680 CCGGCTAGACCAACGAAGATA 59.320 52.381 0.00 0.00 39.03 1.98
117 118 0.460311 CCGGCTAGACCAACGAAGAT 59.540 55.000 0.00 0.00 39.03 2.40
118 119 0.609957 TCCGGCTAGACCAACGAAGA 60.610 55.000 0.00 0.00 39.03 2.87
119 120 0.179134 CTCCGGCTAGACCAACGAAG 60.179 60.000 0.00 0.00 39.03 3.79
120 121 0.609957 TCTCCGGCTAGACCAACGAA 60.610 55.000 0.00 0.00 39.03 3.85
121 122 1.001764 TCTCCGGCTAGACCAACGA 60.002 57.895 0.00 0.00 39.03 3.85
122 123 1.313812 ACTCTCCGGCTAGACCAACG 61.314 60.000 9.58 0.00 39.03 4.10
123 124 0.896226 AACTCTCCGGCTAGACCAAC 59.104 55.000 9.58 0.00 39.03 3.77
184 185 4.096833 GCAATCAACCATTCAGATGTAGCA 59.903 41.667 0.00 0.00 0.00 3.49
363 367 0.396811 AGACCCAGTTCGGTTTCCTG 59.603 55.000 0.00 0.00 35.79 3.86
380 385 1.270550 GTACGGGAAGACCAAACGAGA 59.729 52.381 0.00 0.00 40.22 4.04
548 556 7.058525 ACTATCCACATCATCAATCAACATGT 58.941 34.615 0.00 0.00 0.00 3.21
573 581 8.571461 AAAATCTATTTCTCTTGACATGCAGA 57.429 30.769 0.00 0.00 0.00 4.26
639 2161 1.884235 CTCACTTCAAGGTCCACACC 58.116 55.000 0.00 0.00 44.19 4.16
641 2163 0.836606 TGCTCACTTCAAGGTCCACA 59.163 50.000 0.00 0.00 0.00 4.17
666 2188 2.480100 GGCGGCCCGTTTATAAACA 58.520 52.632 24.27 0.00 38.81 2.83
833 2507 1.218047 CGCACGGGAGGAGAAATGA 59.782 57.895 0.00 0.00 0.00 2.57
835 2509 0.323629 TTTCGCACGGGAGGAGAAAT 59.676 50.000 0.00 0.00 0.00 2.17
850 2524 2.048503 ACGAGGCGAGGGTTTTCG 60.049 61.111 0.00 0.00 43.23 3.46
851 2525 2.092882 CGACGAGGCGAGGGTTTTC 61.093 63.158 0.00 0.00 0.00 2.29
852 2526 2.048503 CGACGAGGCGAGGGTTTT 60.049 61.111 0.00 0.00 0.00 2.43
853 2527 3.278592 GACGACGAGGCGAGGGTTT 62.279 63.158 4.95 0.00 34.83 3.27
854 2528 3.745803 GACGACGAGGCGAGGGTT 61.746 66.667 4.95 0.00 34.83 4.11
857 2531 3.878519 GAGGACGACGAGGCGAGG 61.879 72.222 4.95 0.00 34.83 4.63
858 2532 3.878519 GGAGGACGACGAGGCGAG 61.879 72.222 4.95 0.00 34.83 5.03
859 2533 4.405671 AGGAGGACGACGAGGCGA 62.406 66.667 4.95 0.00 34.83 5.54
1146 2836 3.131400 AGGTAGAATGCGAGAAGAAGGTC 59.869 47.826 0.00 0.00 0.00 3.85
1154 2844 1.406887 GGGCAAAGGTAGAATGCGAGA 60.407 52.381 0.00 0.00 40.94 4.04
1188 2878 4.261447 GGTTTCCTAACAGCAAACACGATT 60.261 41.667 0.00 0.00 35.92 3.34
1262 2952 8.286191 ACAAGTATCATTCTTCCAGGAAAATC 57.714 34.615 2.72 0.00 0.00 2.17
1276 2966 7.004086 TCAAAACAGAAGGGACAAGTATCATT 58.996 34.615 0.00 0.00 0.00 2.57
1283 2982 3.202906 TCGTCAAAACAGAAGGGACAAG 58.797 45.455 0.00 0.00 0.00 3.16
1293 2992 6.307155 CCAGCTAGTTAATTCGTCAAAACAG 58.693 40.000 0.00 0.00 0.00 3.16
1296 2995 4.698304 CCCCAGCTAGTTAATTCGTCAAAA 59.302 41.667 0.00 0.00 0.00 2.44
1304 3003 4.307259 TCCAGATCCCCAGCTAGTTAATT 58.693 43.478 0.00 0.00 0.00 1.40
1356 3059 1.000060 CATTTGAACCCAGTGCCAGTG 60.000 52.381 0.00 0.00 0.00 3.66
1361 3064 3.005684 TCAATCACATTTGAACCCAGTGC 59.994 43.478 0.00 0.00 34.61 4.40
1409 3113 2.171237 TCAATTCTCCGCATGATCCACT 59.829 45.455 0.00 0.00 0.00 4.00
1410 3114 2.289002 GTCAATTCTCCGCATGATCCAC 59.711 50.000 0.00 0.00 0.00 4.02
1411 3115 2.564771 GTCAATTCTCCGCATGATCCA 58.435 47.619 0.00 0.00 0.00 3.41
1412 3116 1.528586 CGTCAATTCTCCGCATGATCC 59.471 52.381 0.00 0.00 0.00 3.36
1413 3117 2.205074 ACGTCAATTCTCCGCATGATC 58.795 47.619 0.00 0.00 0.00 2.92
1414 3118 2.315925 ACGTCAATTCTCCGCATGAT 57.684 45.000 0.00 0.00 0.00 2.45
1449 3153 2.456577 ACCAGCCCATCACAAAATACC 58.543 47.619 0.00 0.00 0.00 2.73
1455 3159 2.752354 CGAAATTACCAGCCCATCACAA 59.248 45.455 0.00 0.00 0.00 3.33
1475 3179 2.069273 ACTCAAGTTCGCTCAATTCCG 58.931 47.619 0.00 0.00 0.00 4.30
1484 3188 0.514691 CTGCTTCCACTCAAGTTCGC 59.485 55.000 0.00 0.00 0.00 4.70
1486 3190 3.393089 TCTCTGCTTCCACTCAAGTTC 57.607 47.619 0.00 0.00 0.00 3.01
1593 3297 6.989155 ATATGAATGAATCAACAGGGCATT 57.011 33.333 0.00 0.00 42.54 3.56
1611 3315 6.262049 ACAAGGCACGTGCATAAATAATATGA 59.738 34.615 38.60 0.00 42.85 2.15
1622 3326 1.739466 CATTCTACAAGGCACGTGCAT 59.261 47.619 38.60 32.11 42.85 3.96
1627 3331 6.701841 ACAGTATTATCATTCTACAAGGCACG 59.298 38.462 0.00 0.00 0.00 5.34
1696 3400 9.917129 CACACATATTATAATGTCATTGCCATT 57.083 29.630 8.39 0.00 38.01 3.16
1697 3401 8.525316 CCACACATATTATAATGTCATTGCCAT 58.475 33.333 8.39 0.00 38.01 4.40
1698 3402 7.523544 GCCACACATATTATAATGTCATTGCCA 60.524 37.037 8.39 0.00 38.01 4.92
1699 3403 6.808212 GCCACACATATTATAATGTCATTGCC 59.192 38.462 8.39 0.00 38.01 4.52
1700 3404 6.524239 CGCCACACATATTATAATGTCATTGC 59.476 38.462 8.39 2.69 38.01 3.56
1868 3578 9.920946 ATATCACAATGGTAGAAACCTAAACAT 57.079 29.630 0.00 0.00 46.91 2.71
1882 3592 9.425248 ACCAATGAAATTCTATATCACAATGGT 57.575 29.630 0.00 0.00 31.22 3.55
2061 3778 7.651808 CACAAAAGAAAGAGGAACACATACAT 58.348 34.615 0.00 0.00 0.00 2.29
2070 3787 3.573967 GGGATGCACAAAAGAAAGAGGAA 59.426 43.478 0.00 0.00 0.00 3.36
2100 3817 6.152154 TGAGGAGTTGAATAGTTGTATCACGA 59.848 38.462 0.00 0.00 0.00 4.35
2101 3818 6.330278 TGAGGAGTTGAATAGTTGTATCACG 58.670 40.000 0.00 0.00 0.00 4.35
2151 3868 1.871080 CATGGCCATTACTCTCGTCC 58.129 55.000 17.92 0.00 0.00 4.79
2179 3896 2.294233 GCAGCAATCAAGTTTGTGAGGA 59.706 45.455 0.00 0.00 0.00 3.71
2324 4354 6.391537 TCCATGTCAATTCACAAATGTCATG 58.608 36.000 0.00 0.00 33.17 3.07
2352 4382 7.889873 TCTTCTTTACCAAATCAGAAAACCA 57.110 32.000 0.00 0.00 0.00 3.67
2372 4466 3.144506 CATAGACACATGCCCCATCTTC 58.855 50.000 0.00 0.00 0.00 2.87
2486 4584 3.191371 AGTGGAAATTCAGCTAAAAGGCG 59.809 43.478 0.00 0.00 37.29 5.52
3305 5480 4.931661 ACCTGTCGTGAGAGTTAAAGAA 57.068 40.909 0.00 0.00 43.49 2.52
3328 5503 5.877564 TGCCTTCGTCAAAATGTCATACATA 59.122 36.000 0.00 0.00 37.97 2.29
3329 5504 4.699735 TGCCTTCGTCAAAATGTCATACAT 59.300 37.500 0.00 0.00 41.31 2.29
3631 5821 9.936759 TCACGGAAATATGCATTAGAATATACA 57.063 29.630 3.54 0.00 0.00 2.29
3634 5824 9.113838 GGATCACGGAAATATGCATTAGAATAT 57.886 33.333 3.54 0.00 0.00 1.28
3635 5825 8.321353 AGGATCACGGAAATATGCATTAGAATA 58.679 33.333 3.54 0.00 0.00 1.75
3636 5826 7.120285 CAGGATCACGGAAATATGCATTAGAAT 59.880 37.037 3.54 0.00 0.00 2.40
3637 5827 6.427853 CAGGATCACGGAAATATGCATTAGAA 59.572 38.462 3.54 0.00 0.00 2.10
3638 5828 5.934043 CAGGATCACGGAAATATGCATTAGA 59.066 40.000 3.54 0.00 0.00 2.10
3639 5829 5.122869 CCAGGATCACGGAAATATGCATTAG 59.877 44.000 3.54 0.00 0.00 1.73
3640 5830 5.003160 CCAGGATCACGGAAATATGCATTA 58.997 41.667 3.54 0.00 0.00 1.90
3641 5831 3.822735 CCAGGATCACGGAAATATGCATT 59.177 43.478 3.54 0.00 0.00 3.56
3642 5832 3.181440 ACCAGGATCACGGAAATATGCAT 60.181 43.478 3.79 3.79 0.00 3.96
3643 5833 2.172505 ACCAGGATCACGGAAATATGCA 59.827 45.455 6.65 0.00 0.00 3.96
3644 5834 2.851195 ACCAGGATCACGGAAATATGC 58.149 47.619 6.65 0.00 0.00 3.14
3645 5835 4.956085 TGTACCAGGATCACGGAAATATG 58.044 43.478 6.65 0.00 0.00 1.78
3646 5836 4.654262 ACTGTACCAGGATCACGGAAATAT 59.346 41.667 6.65 0.00 35.51 1.28
3647 5837 4.028131 ACTGTACCAGGATCACGGAAATA 58.972 43.478 6.65 0.00 35.51 1.40
3648 5838 2.838202 ACTGTACCAGGATCACGGAAAT 59.162 45.455 6.65 0.00 35.51 2.17
3649 5839 2.253610 ACTGTACCAGGATCACGGAAA 58.746 47.619 6.65 0.00 35.51 3.13
3650 5840 1.933021 ACTGTACCAGGATCACGGAA 58.067 50.000 6.65 0.00 35.51 4.30
3651 5841 1.548719 CAACTGTACCAGGATCACGGA 59.451 52.381 6.65 0.00 35.51 4.69
3652 5842 1.548719 TCAACTGTACCAGGATCACGG 59.451 52.381 0.00 0.00 35.51 4.94
3653 5843 2.417379 CCTCAACTGTACCAGGATCACG 60.417 54.545 0.00 0.00 35.51 4.35
3654 5844 2.567615 ACCTCAACTGTACCAGGATCAC 59.432 50.000 0.00 0.00 35.51 3.06
3655 5845 2.902608 ACCTCAACTGTACCAGGATCA 58.097 47.619 0.00 0.00 35.51 2.92
3656 5846 3.600388 CAACCTCAACTGTACCAGGATC 58.400 50.000 0.00 0.00 35.51 3.36
3657 5847 2.290323 GCAACCTCAACTGTACCAGGAT 60.290 50.000 0.00 0.00 35.51 3.24
3658 5848 1.071699 GCAACCTCAACTGTACCAGGA 59.928 52.381 0.00 0.00 35.51 3.86
3659 5849 1.072331 AGCAACCTCAACTGTACCAGG 59.928 52.381 0.00 0.00 35.51 4.45
3660 5850 2.037772 AGAGCAACCTCAACTGTACCAG 59.962 50.000 0.00 0.00 40.68 4.00
3661 5851 2.047061 AGAGCAACCTCAACTGTACCA 58.953 47.619 0.00 0.00 40.68 3.25
3662 5852 2.224305 ACAGAGCAACCTCAACTGTACC 60.224 50.000 0.00 0.00 40.68 3.34
3663 5853 3.113260 ACAGAGCAACCTCAACTGTAC 57.887 47.619 0.00 0.00 40.68 2.90
3664 5854 4.948341 TTACAGAGCAACCTCAACTGTA 57.052 40.909 0.00 0.00 41.17 2.74
3665 5855 3.838244 TTACAGAGCAACCTCAACTGT 57.162 42.857 0.00 0.00 42.94 3.55
3666 5856 5.471456 AGAATTTACAGAGCAACCTCAACTG 59.529 40.000 0.00 0.00 40.68 3.16
3667 5857 5.471456 CAGAATTTACAGAGCAACCTCAACT 59.529 40.000 0.00 0.00 40.68 3.16
3668 5858 5.239525 ACAGAATTTACAGAGCAACCTCAAC 59.760 40.000 0.00 0.00 40.68 3.18
3669 5859 5.239306 CACAGAATTTACAGAGCAACCTCAA 59.761 40.000 0.00 0.00 40.68 3.02
3670 5860 4.756642 CACAGAATTTACAGAGCAACCTCA 59.243 41.667 0.00 0.00 40.68 3.86
3671 5861 4.997395 TCACAGAATTTACAGAGCAACCTC 59.003 41.667 0.00 0.00 38.42 3.85
3672 5862 4.973168 TCACAGAATTTACAGAGCAACCT 58.027 39.130 0.00 0.00 0.00 3.50
3673 5863 5.689383 TTCACAGAATTTACAGAGCAACC 57.311 39.130 0.00 0.00 0.00 3.77
3698 5888 9.877178 GCAGTACTAATCTAGCCAATACATTAT 57.123 33.333 0.00 0.00 0.00 1.28
3699 5889 8.866093 TGCAGTACTAATCTAGCCAATACATTA 58.134 33.333 0.00 0.00 0.00 1.90
3700 5890 7.735917 TGCAGTACTAATCTAGCCAATACATT 58.264 34.615 0.00 0.00 0.00 2.71
3701 5891 7.303182 TGCAGTACTAATCTAGCCAATACAT 57.697 36.000 0.00 0.00 0.00 2.29
3702 5892 6.724893 TGCAGTACTAATCTAGCCAATACA 57.275 37.500 0.00 0.00 0.00 2.29
3703 5893 7.210873 AGTTGCAGTACTAATCTAGCCAATAC 58.789 38.462 0.00 0.00 0.00 1.89
3704 5894 7.361457 AGTTGCAGTACTAATCTAGCCAATA 57.639 36.000 0.00 0.00 0.00 1.90
3705 5895 6.240549 AGTTGCAGTACTAATCTAGCCAAT 57.759 37.500 0.00 0.00 0.00 3.16
3706 5896 5.677319 AGTTGCAGTACTAATCTAGCCAA 57.323 39.130 0.00 0.00 0.00 4.52
3707 5897 5.186992 TCAAGTTGCAGTACTAATCTAGCCA 59.813 40.000 0.00 0.00 0.00 4.75
3708 5898 5.661458 TCAAGTTGCAGTACTAATCTAGCC 58.339 41.667 0.00 0.00 0.00 3.93
3709 5899 7.278868 ACATTCAAGTTGCAGTACTAATCTAGC 59.721 37.037 0.00 0.00 0.00 3.42
3710 5900 8.709386 ACATTCAAGTTGCAGTACTAATCTAG 57.291 34.615 0.00 0.00 0.00 2.43
3712 5902 9.672673 AATACATTCAAGTTGCAGTACTAATCT 57.327 29.630 0.00 0.00 0.00 2.40
3715 5905 9.062524 ACAAATACATTCAAGTTGCAGTACTAA 57.937 29.630 0.00 0.00 0.00 2.24
3716 5906 8.615878 ACAAATACATTCAAGTTGCAGTACTA 57.384 30.769 0.00 0.00 0.00 1.82
3717 5907 7.510549 ACAAATACATTCAAGTTGCAGTACT 57.489 32.000 0.00 0.00 0.00 2.73
3718 5908 8.479280 CAAACAAATACATTCAAGTTGCAGTAC 58.521 33.333 0.00 0.00 0.00 2.73
3719 5909 8.194104 ACAAACAAATACATTCAAGTTGCAGTA 58.806 29.630 0.00 1.51 0.00 2.74
3720 5910 7.041107 ACAAACAAATACATTCAAGTTGCAGT 58.959 30.769 0.00 0.00 0.00 4.40
3721 5911 7.467557 ACAAACAAATACATTCAAGTTGCAG 57.532 32.000 0.00 0.00 0.00 4.41
3722 5912 7.840342 AACAAACAAATACATTCAAGTTGCA 57.160 28.000 0.00 0.00 0.00 4.08
3723 5913 9.553418 AAAAACAAACAAATACATTCAAGTTGC 57.447 25.926 0.00 0.00 0.00 4.17
3739 5929 8.920665 GCAGCATAATATACACAAAAACAAACA 58.079 29.630 0.00 0.00 0.00 2.83
3740 5930 8.920665 TGCAGCATAATATACACAAAAACAAAC 58.079 29.630 0.00 0.00 0.00 2.93
3741 5931 9.481340 TTGCAGCATAATATACACAAAAACAAA 57.519 25.926 0.00 0.00 0.00 2.83
3742 5932 9.481340 TTTGCAGCATAATATACACAAAAACAA 57.519 25.926 0.00 0.00 0.00 2.83
3743 5933 9.481340 TTTTGCAGCATAATATACACAAAAACA 57.519 25.926 0.00 0.00 34.04 2.83
3792 5982 3.809832 CAGGATCACGGAAACATGGATAC 59.190 47.826 0.00 0.00 0.00 2.24
3800 5990 2.754946 TGTACCAGGATCACGGAAAC 57.245 50.000 6.65 5.20 0.00 2.78
3901 6091 6.375945 TGTTTGGCAGCATAATATACACAG 57.624 37.500 0.00 0.00 0.00 3.66
3941 6133 9.265862 AGGATCAGGGAAATATGAGTAGAATAG 57.734 37.037 0.00 0.00 0.00 1.73
4037 6231 2.226200 TGTCAGTCGGTCAATGCAAATG 59.774 45.455 0.00 0.00 0.00 2.32
4146 6341 1.555533 CCTCTCCAGGTAACCCAAGTC 59.444 57.143 0.00 0.00 34.60 3.01
4416 6613 4.054671 GTCTCACAAAGTCAAGTCAGGAG 58.945 47.826 0.00 0.00 0.00 3.69
4558 6757 4.740205 GCTAAAACAACTTGCAAGAAGGTC 59.260 41.667 32.50 10.58 0.00 3.85
4559 6758 4.402474 AGCTAAAACAACTTGCAAGAAGGT 59.598 37.500 32.50 21.78 0.00 3.50
4560 6759 4.936891 AGCTAAAACAACTTGCAAGAAGG 58.063 39.130 32.50 21.17 0.00 3.46
4598 6799 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
4600 6801 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
4607 6808 4.533311 TGAAATAAAACCTACTCCCTCCGT 59.467 41.667 0.00 0.00 0.00 4.69
4637 6838 2.873094 AAAAGAAACGGGACTAGGGG 57.127 50.000 0.00 0.00 0.00 4.79
4692 6893 0.537143 AGGCACACAAAGAATCGGCA 60.537 50.000 0.00 0.00 0.00 5.69
4693 6894 0.169009 GAGGCACACAAAGAATCGGC 59.831 55.000 0.00 0.00 0.00 5.54
4694 6895 0.804989 GGAGGCACACAAAGAATCGG 59.195 55.000 0.00 0.00 0.00 4.18
4695 6896 1.813513 AGGAGGCACACAAAGAATCG 58.186 50.000 0.00 0.00 0.00 3.34
4696 6897 3.935828 GACTAGGAGGCACACAAAGAATC 59.064 47.826 0.00 0.00 0.00 2.52
4697 6898 3.327757 TGACTAGGAGGCACACAAAGAAT 59.672 43.478 0.00 0.00 0.00 2.40
4698 6899 2.703536 TGACTAGGAGGCACACAAAGAA 59.296 45.455 0.00 0.00 0.00 2.52
4699 6900 2.325484 TGACTAGGAGGCACACAAAGA 58.675 47.619 0.00 0.00 0.00 2.52
4700 6901 2.839486 TGACTAGGAGGCACACAAAG 57.161 50.000 0.00 0.00 0.00 2.77
4701 6902 2.637382 TGATGACTAGGAGGCACACAAA 59.363 45.455 0.00 0.00 35.04 2.83
4744 6945 9.777297 TCAAGGAAATATACATTGATCGATTCA 57.223 29.630 0.00 0.00 34.09 2.57
4750 6951 7.750229 TGGCTCAAGGAAATATACATTGATC 57.250 36.000 9.26 6.50 37.41 2.92
4793 6994 6.405176 CGAATAAAAACGGAGGGAGTAGTACT 60.405 42.308 1.37 1.37 0.00 2.73
4794 6995 5.745769 CGAATAAAAACGGAGGGAGTAGTAC 59.254 44.000 0.00 0.00 0.00 2.73
4795 6996 5.418840 ACGAATAAAAACGGAGGGAGTAGTA 59.581 40.000 0.00 0.00 0.00 1.82
4796 6997 4.221482 ACGAATAAAAACGGAGGGAGTAGT 59.779 41.667 0.00 0.00 0.00 2.73
4797 6998 4.752146 ACGAATAAAAACGGAGGGAGTAG 58.248 43.478 0.00 0.00 0.00 2.57
4798 6999 4.806640 ACGAATAAAAACGGAGGGAGTA 57.193 40.909 0.00 0.00 0.00 2.59
4799 7000 3.690475 ACGAATAAAAACGGAGGGAGT 57.310 42.857 0.00 0.00 0.00 3.85
4800 7001 5.366829 AAAACGAATAAAAACGGAGGGAG 57.633 39.130 0.00 0.00 0.00 4.30
4801 7002 5.771153 AAAAACGAATAAAAACGGAGGGA 57.229 34.783 0.00 0.00 0.00 4.20
4802 7003 8.523523 AAATAAAAACGAATAAAAACGGAGGG 57.476 30.769 0.00 0.00 0.00 4.30
4808 7009 9.927324 GCGGAGTAAATAAAAACGAATAAAAAC 57.073 29.630 0.00 0.00 0.00 2.43
4809 7010 9.674824 TGCGGAGTAAATAAAAACGAATAAAAA 57.325 25.926 0.00 0.00 0.00 1.94
4810 7011 9.843334 ATGCGGAGTAAATAAAAACGAATAAAA 57.157 25.926 0.00 0.00 0.00 1.52
4816 7017 9.531942 TCTAATATGCGGAGTAAATAAAAACGA 57.468 29.630 0.00 0.00 0.00 3.85
4817 7018 9.793245 CTCTAATATGCGGAGTAAATAAAAACG 57.207 33.333 0.00 0.00 0.00 3.60
4822 7023 9.472361 GTCAACTCTAATATGCGGAGTAAATAA 57.528 33.333 6.10 0.00 39.09 1.40
4823 7024 8.857098 AGTCAACTCTAATATGCGGAGTAAATA 58.143 33.333 6.10 0.00 39.09 1.40
4824 7025 7.727181 AGTCAACTCTAATATGCGGAGTAAAT 58.273 34.615 6.10 0.00 39.09 1.40
4825 7026 7.108841 AGTCAACTCTAATATGCGGAGTAAA 57.891 36.000 6.10 0.00 39.09 2.01
4826 7027 6.710597 AGTCAACTCTAATATGCGGAGTAA 57.289 37.500 6.10 0.00 39.09 2.24
4827 7028 7.812690 TTAGTCAACTCTAATATGCGGAGTA 57.187 36.000 6.10 0.00 39.09 2.59
4828 7029 6.710597 TTAGTCAACTCTAATATGCGGAGT 57.289 37.500 0.00 0.00 41.37 3.85
4829 7030 7.203910 ACTTTAGTCAACTCTAATATGCGGAG 58.796 38.462 0.00 0.00 31.28 4.63
4830 7031 7.108841 ACTTTAGTCAACTCTAATATGCGGA 57.891 36.000 0.00 0.00 31.28 5.54
4831 7032 7.396190 GACTTTAGTCAACTCTAATATGCGG 57.604 40.000 5.04 0.00 44.18 5.69
4854 7055 7.559897 ACTTGGGTCAATCTTTAGAAAGTTTGA 59.440 33.333 18.20 18.20 45.35 2.69
4855 7056 7.716612 ACTTGGGTCAATCTTTAGAAAGTTTG 58.283 34.615 15.23 15.23 42.69 2.93
4856 7057 7.898014 ACTTGGGTCAATCTTTAGAAAGTTT 57.102 32.000 2.10 0.00 37.31 2.66
4857 7058 7.898014 AACTTGGGTCAATCTTTAGAAAGTT 57.102 32.000 2.10 0.00 37.31 2.66
4858 7059 7.898014 AAACTTGGGTCAATCTTTAGAAAGT 57.102 32.000 2.10 0.00 37.31 2.66
4921 7122 9.631257 TCATTATCAAATGTACTTCCACATCAT 57.369 29.630 0.00 0.00 42.66 2.45
4922 7123 9.460019 TTCATTATCAAATGTACTTCCACATCA 57.540 29.630 0.00 0.00 42.66 3.07
4925 7126 9.685276 AGATTCATTATCAAATGTACTTCCACA 57.315 29.630 0.00 0.00 42.66 4.17
5024 7225 7.697691 ACTCCGCATATTACTTTTGATCAAAG 58.302 34.615 19.64 15.83 46.70 2.77
5025 7226 7.624360 ACTCCGCATATTACTTTTGATCAAA 57.376 32.000 16.91 16.91 0.00 2.69
5026 7227 8.725405 TTACTCCGCATATTACTTTTGATCAA 57.275 30.769 3.38 3.38 0.00 2.57
5027 7228 8.725405 TTTACTCCGCATATTACTTTTGATCA 57.275 30.769 0.00 0.00 0.00 2.92
5034 7235 9.925268 CGTTTTTATTTACTCCGCATATTACTT 57.075 29.630 0.00 0.00 0.00 2.24
5035 7236 8.553696 CCGTTTTTATTTACTCCGCATATTACT 58.446 33.333 0.00 0.00 0.00 2.24
5036 7237 8.550376 TCCGTTTTTATTTACTCCGCATATTAC 58.450 33.333 0.00 0.00 0.00 1.89
5037 7238 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
5038 7239 7.496591 TCTCCGTTTTTATTTACTCCGCATATT 59.503 33.333 0.00 0.00 0.00 1.28
5039 7240 6.987992 TCTCCGTTTTTATTTACTCCGCATAT 59.012 34.615 0.00 0.00 0.00 1.78
5040 7241 6.339730 TCTCCGTTTTTATTTACTCCGCATA 58.660 36.000 0.00 0.00 0.00 3.14
5041 7242 5.180271 TCTCCGTTTTTATTTACTCCGCAT 58.820 37.500 0.00 0.00 0.00 4.73
5042 7243 4.567971 TCTCCGTTTTTATTTACTCCGCA 58.432 39.130 0.00 0.00 0.00 5.69
5043 7244 4.866486 TCTCTCCGTTTTTATTTACTCCGC 59.134 41.667 0.00 0.00 0.00 5.54
5044 7245 6.098017 ACTCTCTCCGTTTTTATTTACTCCG 58.902 40.000 0.00 0.00 0.00 4.63
5045 7246 8.465201 TCTACTCTCTCCGTTTTTATTTACTCC 58.535 37.037 0.00 0.00 0.00 3.85
5046 7247 9.505995 CTCTACTCTCTCCGTTTTTATTTACTC 57.494 37.037 0.00 0.00 0.00 2.59
5047 7248 9.022884 ACTCTACTCTCTCCGTTTTTATTTACT 57.977 33.333 0.00 0.00 0.00 2.24
5050 7251 7.975058 GCTACTCTACTCTCTCCGTTTTTATTT 59.025 37.037 0.00 0.00 0.00 1.40
5051 7252 7.339976 AGCTACTCTACTCTCTCCGTTTTTATT 59.660 37.037 0.00 0.00 0.00 1.40
5052 7253 6.829811 AGCTACTCTACTCTCTCCGTTTTTAT 59.170 38.462 0.00 0.00 0.00 1.40
5053 7254 6.179040 AGCTACTCTACTCTCTCCGTTTTTA 58.821 40.000 0.00 0.00 0.00 1.52
5054 7255 5.011586 AGCTACTCTACTCTCTCCGTTTTT 58.988 41.667 0.00 0.00 0.00 1.94
5055 7256 4.591929 AGCTACTCTACTCTCTCCGTTTT 58.408 43.478 0.00 0.00 0.00 2.43
5056 7257 4.224991 AGCTACTCTACTCTCTCCGTTT 57.775 45.455 0.00 0.00 0.00 3.60
5057 7258 3.918294 AGCTACTCTACTCTCTCCGTT 57.082 47.619 0.00 0.00 0.00 4.44
5058 7259 5.556006 ATTAGCTACTCTACTCTCTCCGT 57.444 43.478 0.00 0.00 0.00 4.69
5059 7260 6.870971 AAATTAGCTACTCTACTCTCTCCG 57.129 41.667 0.00 0.00 0.00 4.63
5060 7261 9.216117 CTCTAAATTAGCTACTCTACTCTCTCC 57.784 40.741 0.00 0.00 0.00 3.71
5061 7262 8.718734 GCTCTAAATTAGCTACTCTACTCTCTC 58.281 40.741 0.00 0.00 37.01 3.20
5062 7263 8.215050 TGCTCTAAATTAGCTACTCTACTCTCT 58.785 37.037 0.00 0.00 40.73 3.10
5063 7264 8.385898 TGCTCTAAATTAGCTACTCTACTCTC 57.614 38.462 0.00 0.00 40.73 3.20
5064 7265 7.040686 GCTGCTCTAAATTAGCTACTCTACTCT 60.041 40.741 0.00 0.00 40.73 3.24
5065 7266 7.040686 AGCTGCTCTAAATTAGCTACTCTACTC 60.041 40.741 0.00 0.00 44.10 2.59
5066 7267 6.775629 AGCTGCTCTAAATTAGCTACTCTACT 59.224 38.462 0.00 0.00 44.10 2.57
5067 7268 6.861055 CAGCTGCTCTAAATTAGCTACTCTAC 59.139 42.308 0.00 0.00 44.11 2.59
5068 7269 6.515862 GCAGCTGCTCTAAATTAGCTACTCTA 60.516 42.308 31.33 0.00 44.11 2.43
5069 7270 5.738783 GCAGCTGCTCTAAATTAGCTACTCT 60.739 44.000 31.33 0.00 44.11 3.24
5070 7271 4.447389 GCAGCTGCTCTAAATTAGCTACTC 59.553 45.833 31.33 0.00 44.11 2.59
5071 7272 4.141846 TGCAGCTGCTCTAAATTAGCTACT 60.142 41.667 36.61 0.00 44.11 2.57
5072 7273 4.122776 TGCAGCTGCTCTAAATTAGCTAC 58.877 43.478 36.61 5.10 44.11 3.58
5073 7274 4.141846 ACTGCAGCTGCTCTAAATTAGCTA 60.142 41.667 36.61 12.92 44.11 3.32
5074 7275 3.204526 CTGCAGCTGCTCTAAATTAGCT 58.795 45.455 36.61 0.00 46.66 3.32
5128 7329 3.699038 GGCCATCATAAAGGTTAAGCACA 59.301 43.478 7.52 0.00 0.00 4.57
5181 7382 5.178096 TCCAGCTAATCTGATTGGAACAA 57.822 39.130 16.72 0.00 45.16 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.