AutoCloner

Multiple sequence alignment - TraesCS7B01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G098100	chr7B	100.000	4223	0	0	1	4223	113059215	113063437	0.000000e+00	7799.0
1	TraesCS7B01G098100	chr7B	79.000	200	26	6	771	954	74568584	74568783	5.730000e-24	122.0
2	TraesCS7B01G098100	chr4B	95.197	2790	73	23	1455	4223	402965453	402968202	0.000000e+00	4353.0
3	TraesCS7B01G098100	chr4B	90.990	1243	56	31	1	1206	402964233	402965456	0.000000e+00	1624.0
4	TraesCS7B01G098100	chr4B	79.208	202	24	2	772	955	79610462	79610261	1.590000e-24	124.0
5	TraesCS7B01G098100	chr7D	89.537	2915	134	72	993	3817	150900379	150903212	0.000000e+00	3535.0
6	TraesCS7B01G098100	chr7D	89.722	720	65	6	1	717	38997801	38998514	0.000000e+00	911.0
7	TraesCS7B01G098100	chr7D	83.287	359	14	18	3851	4195	150903211	150903537	5.340000e-74	289.0
8	TraesCS7B01G098100	chr7A	90.605	958	43	22	982	1900	150559463	150560412	0.000000e+00	1227.0
9	TraesCS7B01G098100	chr7A	88.876	836	51	24	1875	2676	150560430	150561257	0.000000e+00	990.0
10	TraesCS7B01G098100	chr7A	83.180	868	67	38	3210	4040	150582142	150582967	0.000000e+00	721.0
11	TraesCS7B01G098100	chr7A	91.132	530	19	15	2644	3146	150561281	150561809	0.000000e+00	693.0
12	TraesCS7B01G098100	chr7A	90.076	131	13	0	956	1086	150451258	150451388	2.020000e-38	171.0
13	TraesCS7B01G098100	chr7A	87.500	72	6	3	887	957	122205540	122205471	3.500000e-11	80.5
14	TraesCS7B01G098100	chr7A	100.000	35	0	0	1081	1115	150546926	150546960	9.800000e-07	65.8
15	TraesCS7B01G098100	chr5B	92.629	719	47	5	1	718	489818431	489819144	0.000000e+00	1029.0
16	TraesCS7B01G098100	chr5B	88.611	720	69	8	1	717	541628856	541629565	0.000000e+00	863.0
17	TraesCS7B01G098100	chr2B	92.211	719	51	5	1	717	518447422	518446707	0.000000e+00	1013.0
18	TraesCS7B01G098100	chr2B	83.902	205	15	8	768	954	171459766	171459970	3.350000e-41	180.0
19	TraesCS7B01G098100	chr1A	91.783	718	54	5	1	716	364225028	364224314	0.000000e+00	994.0
20	TraesCS7B01G098100	chr1A	88.873	719	69	7	1	717	403021217	403021926	0.000000e+00	874.0
21	TraesCS7B01G098100	chr1A	92.742	124	7	2	772	894	507953243	507953365	1.210000e-40	178.0
22	TraesCS7B01G098100	chr1A	92.188	64	3	2	893	956	398478456	398478395	5.820000e-14	89.8
23	TraesCS7B01G098100	chr6B	90.574	732	62	6	1	731	580085307	580084582	0.000000e+00	963.0
24	TraesCS7B01G098100	chr6B	83.871	279	36	8	1231	1500	598450938	598451216	1.510000e-64	257.0
25	TraesCS7B01G098100	chr2A	88.889	720	68	10	1	716	376693608	376692897	0.000000e+00	876.0
26	TraesCS7B01G098100	chr2A	93.333	120	6	2	769	887	595540398	595540280	4.340000e-40	176.0
27	TraesCS7B01G098100	chr6A	84.672	274	33	8	1236	1500	545648068	545648341	9.000000e-67	265.0
28	TraesCS7B01G098100	chr6D	84.229	279	35	8	1231	1500	399759380	399759658	3.240000e-66	263.0
29	TraesCS7B01G098100	chr6D	93.333	120	7	1	769	887	158111797	158111916	4.340000e-40	176.0
30	TraesCS7B01G098100	chr6D	89.209	139	12	3	750	887	269564349	269564485	2.020000e-38	171.0
31	TraesCS7B01G098100	chr3D	92.742	124	9	0	764	887	482018630	482018507	3.350000e-41	180.0
32	TraesCS7B01G098100	chr1D	93.333	120	7	1	769	887	296894302	296894421	4.340000e-40	176.0
33	TraesCS7B01G098100	chr1D	94.444	54	3	0	903	956	317457986	317457933	2.710000e-12	84.2
34	TraesCS7B01G098100	chr2D	92.623	122	8	1	767	887	374124377	374124256	1.560000e-39	174.0
35	TraesCS7B01G098100	chr2D	93.443	61	4	0	1514	1574	640618306	640618366	1.620000e-14	91.6
36	TraesCS7B01G098100	chr3A	80.412	194	25	10	770	953	616097605	616097795	7.370000e-28	135.0
37	TraesCS7B01G098100	chr3A	77.778	198	25	11	772	951	22045906	22046102	2.080000e-18	104.0
38	TraesCS7B01G098100	chr3A	76.836	177	20	9	794	953	57495442	57495270	3.500000e-11	80.5
39	TraesCS7B01G098100	chr1B	78.894	199	23	9	773	953	533403943	533403746	2.670000e-22	117.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G098100	chr7B	113059215	113063437	4222	False	7799.0	7799	100.000000	1	4223	1	chr7B.!!$F2	4222
1	TraesCS7B01G098100	chr4B	402964233	402968202	3969	False	2988.5	4353	93.093500	1	4223	2	chr4B.!!$F1	4222
2	TraesCS7B01G098100	chr7D	150900379	150903537	3158	False	1912.0	3535	86.412000	993	4195	2	chr7D.!!$F2	3202
3	TraesCS7B01G098100	chr7D	38997801	38998514	713	False	911.0	911	89.722000	1	717	1	chr7D.!!$F1	716
4	TraesCS7B01G098100	chr7A	150559463	150561809	2346	False	970.0	1227	90.204333	982	3146	3	chr7A.!!$F4	2164
5	TraesCS7B01G098100	chr7A	150582142	150582967	825	False	721.0	721	83.180000	3210	4040	1	chr7A.!!$F3	830
6	TraesCS7B01G098100	chr5B	489818431	489819144	713	False	1029.0	1029	92.629000	1	718	1	chr5B.!!$F1	717
7	TraesCS7B01G098100	chr5B	541628856	541629565	709	False	863.0	863	88.611000	1	717	1	chr5B.!!$F2	716
8	TraesCS7B01G098100	chr2B	518446707	518447422	715	True	1013.0	1013	92.211000	1	717	1	chr2B.!!$R1	716
9	TraesCS7B01G098100	chr1A	364224314	364225028	714	True	994.0	994	91.783000	1	716	1	chr1A.!!$R1	715
10	TraesCS7B01G098100	chr1A	403021217	403021926	709	False	874.0	874	88.873000	1	717	1	chr1A.!!$F1	716
11	TraesCS7B01G098100	chr6B	580084582	580085307	725	True	963.0	963	90.574000	1	731	1	chr6B.!!$R1	730
12	TraesCS7B01G098100	chr2A	376692897	376693608	711	True	876.0	876	88.889000	1	716	1	chr2A.!!$R1	715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
757	765	0.179137	CTGATACTTCACCGCAGCGA	60.179	55.0	18.75	0.0	0.00	4.93	F
1699	1788	0.179062	GTTCATCGATGGCAGCTCCT	60.179	55.0	24.61	0.0	35.26	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2402	2570	1.079612	GCAAAGCAAGATGTGGCCC	60.08	57.895	0.00	0.0	0.00	5.80	R
3422	3703	0.469917	GCCTGGCTACTTGCAGGATA	59.53	55.000	12.43	0.0	45.15	2.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
292	294	1.133025	GACTCCCGTCAAAATGCATGG	59.867	52.381	0.00	0.00	39.98	3.66
469	474	2.334946	GCGGCTCAACAATCCAGCA	61.335	57.895	0.00	0.00	34.62	4.41
540	545	1.391485	CGATGAGAACAGCAAAGACGG	59.609	52.381	0.00	0.00	32.22	4.79
660	665	7.445402	GGTGAGATCTTTAGCCATGCTTAATAA	59.555	37.037	0.00	0.00	40.44	1.40
695	702	3.647590	AGGGTTGTTTTCTCCATTGCAAT	59.352	39.130	5.99	5.99	0.00	3.56
757	765	0.179137	CTGATACTTCACCGCAGCGA	60.179	55.000	18.75	0.00	0.00	4.93
761	769	1.576451	TACTTCACCGCAGCGACGTA	61.576	55.000	18.75	6.92	0.00	3.57
767	775	2.097160	CGCAGCGACGTACGTACT	59.903	61.111	22.87	18.63	44.60	2.73
787	795	4.980573	ACTGTAAGGCCTTGTACAATGAA	58.019	39.130	28.77	0.77	39.30	2.57
800	808	2.181975	ACAATGAAAGATGCTTGGGGG	58.818	47.619	0.00	0.00	0.00	5.40
819	828	5.477607	GGGGGTGCTTACAAAAATAAACT	57.522	39.130	0.00	0.00	0.00	2.66
853	862	2.684001	CACCGGTGCCTATTTCTACA	57.316	50.000	24.02	0.00	0.00	2.74
854	863	2.550978	CACCGGTGCCTATTTCTACAG	58.449	52.381	24.02	0.00	0.00	2.74
855	864	2.167693	CACCGGTGCCTATTTCTACAGA	59.832	50.000	24.02	0.00	0.00	3.41
856	865	2.835764	ACCGGTGCCTATTTCTACAGAA	59.164	45.455	6.12	0.00	0.00	3.02
857	866	3.118738	ACCGGTGCCTATTTCTACAGAAG	60.119	47.826	6.12	0.00	35.21	2.85
858	867	3.132289	CCGGTGCCTATTTCTACAGAAGA	59.868	47.826	0.00	0.00	35.21	2.87
859	868	4.363999	CGGTGCCTATTTCTACAGAAGAG	58.636	47.826	0.00	0.00	35.05	2.85
860	869	4.098044	CGGTGCCTATTTCTACAGAAGAGA	59.902	45.833	5.12	0.00	35.05	3.10
861	870	5.353111	GGTGCCTATTTCTACAGAAGAGAC	58.647	45.833	5.12	0.00	35.05	3.36
862	871	5.038033	GTGCCTATTTCTACAGAAGAGACG	58.962	45.833	5.12	0.00	35.05	4.18
863	872	4.045783	GCCTATTTCTACAGAAGAGACGC	58.954	47.826	5.12	0.00	35.05	5.19
864	873	4.202070	GCCTATTTCTACAGAAGAGACGCT	60.202	45.833	5.12	0.00	35.05	5.07
865	874	5.680151	GCCTATTTCTACAGAAGAGACGCTT	60.680	44.000	0.00	0.00	40.25	4.68
866	875	6.459848	GCCTATTTCTACAGAAGAGACGCTTA	60.460	42.308	0.00	0.00	36.83	3.09
867	876	7.136119	CCTATTTCTACAGAAGAGACGCTTAG	58.864	42.308	0.00	0.00	36.83	2.18
868	877	5.961396	TTTCTACAGAAGAGACGCTTAGT	57.039	39.130	0.00	0.00	36.83	2.24
886	895	5.567138	TTAGTTAAGCGTCTACCCTGTAC	57.433	43.478	0.00	0.00	0.00	2.90
887	896	3.694926	AGTTAAGCGTCTACCCTGTACT	58.305	45.455	0.00	0.00	0.00	2.73
888	897	4.085009	AGTTAAGCGTCTACCCTGTACTT	58.915	43.478	0.00	0.00	0.00	2.24
890	899	5.711976	AGTTAAGCGTCTACCCTGTACTTAA	59.288	40.000	0.00	0.00	0.00	1.85
891	900	4.715527	AAGCGTCTACCCTGTACTTAAG	57.284	45.455	0.00	0.00	0.00	1.85
898	922	7.761249	GCGTCTACCCTGTACTTAAGAAAAATA	59.239	37.037	10.09	0.00	0.00	1.40
954	978	5.750524	TCTTGCATTGTACAAGGCCTAATA	58.249	37.500	34.56	18.20	46.35	0.98
1202	1262	3.955044	GCCCTCCCGCCCCTATTC	61.955	72.222	0.00	0.00	0.00	1.75
1222	1282	3.145551	CCCGTCGATCGACCCCTT	61.146	66.667	35.48	0.00	41.76	3.95
1615	1701	2.187946	GGCGATGACCAGTCCCTG	59.812	66.667	0.00	0.00	0.00	4.45
1699	1788	0.179062	GTTCATCGATGGCAGCTCCT	60.179	55.000	24.61	0.00	35.26	3.69
1739	1828	0.389817	TTCTTCCGCGTGATGGTCAG	60.390	55.000	4.92	0.00	0.00	3.51
1844	1936	4.096532	TCCAGCTCTTCACTAATCACTACG	59.903	45.833	0.00	0.00	0.00	3.51
1947	2082	5.105635	ACGTTGGTATCTGACGAAATAAGGA	60.106	40.000	9.01	0.00	39.85	3.36
1952	2087	3.973206	TCTGACGAAATAAGGAAGGCA	57.027	42.857	0.00	0.00	0.00	4.75
1959	2094	5.478407	ACGAAATAAGGAAGGCAATTTTGG	58.522	37.500	0.00	0.00	30.29	3.28
1960	2095	4.869861	CGAAATAAGGAAGGCAATTTTGGG	59.130	41.667	0.00	0.00	0.00	4.12
1996	2132	9.515020	TGTTCTTCAGAAATTTGTATTTGTGTC	57.485	29.630	0.00	0.00	42.54	3.67
2001	2137	7.657336	TCAGAAATTTGTATTTGTGTCCTTCC	58.343	34.615	0.00	0.00	42.54	3.46
2391	2559	6.150140	GGCATATTATTCCCACTCAAAGCTAG	59.850	42.308	0.00	0.00	0.00	3.42
2402	2570	6.758886	CCCACTCAAAGCTAGACTATACTTTG	59.241	42.308	21.35	21.35	46.55	2.77
2847	3080	7.011499	TGGCCTGTATTTTAGAGTTCAAGTA	57.989	36.000	3.32	0.00	0.00	2.24
3174	3434	5.651576	TGCAATCATAAGGTTACTGCAATGA	59.348	36.000	0.00	0.00	35.53	2.57
3175	3435	6.321945	TGCAATCATAAGGTTACTGCAATGAT	59.678	34.615	1.30	1.30	35.53	2.45
3285	3558	3.041940	GTGGGTCGTGACAAGGCG	61.042	66.667	2.00	0.00	0.00	5.52
3336	3609	2.878406	CTGAACTGAATGAAACGTGGGT	59.122	45.455	0.00	0.00	0.00	4.51
3340	3613	1.806542	CTGAATGAAACGTGGGTCCAG	59.193	52.381	0.00	0.00	0.00	3.86
3369	3650	9.369904	GTGTTGGAATAATTGTTTCAGCATAAT	57.630	29.630	14.29	0.00	0.00	1.28
3416	3697	7.504924	TGTTTCTACAACCTCCAAATAAGTG	57.495	36.000	0.00	0.00	0.00	3.16
3417	3698	6.488683	TGTTTCTACAACCTCCAAATAAGTGG	59.511	38.462	0.00	0.00	40.33	4.00
3437	3718	4.195225	GGAGTATATCCTGCAAGTAGCC	57.805	50.000	0.00	0.00	45.64	3.93
3466	3750	1.825090	TGTTGATGCAAGTAGCCCAG	58.175	50.000	0.00	0.00	44.83	4.45
3511	3801	5.813717	TGAGTAATTGTGGTATCTACGACG	58.186	41.667	0.00	0.00	37.68	5.12
3577	3867	2.768253	TCAGACAGCGGATTGTGATT	57.232	45.000	0.00	0.00	0.00	2.57
3616	3911	1.174783	GCAGGAGTAAGAGACGGTCA	58.825	55.000	11.27	0.00	0.00	4.02
3789	4095	2.028337	GCGGGCCTTCTCGATCTC	59.972	66.667	0.84	0.00	0.00	2.75
4211	4539	3.878699	CGGGTTACACCAACTGTTTACTT	59.121	43.478	0.00	0.00	41.02	2.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
292	294	2.661718	TGAAACCTTGGTTGGACTTCC	58.338	47.619	5.74	0.00	0.00	3.46
334	336	7.278646	TCTGTGTCATCATGTAAATTGAGTAGC	59.721	37.037	0.00	0.00	0.00	3.58
469	474	1.970640	GAAGGTTGGCAAGGTCCAATT	59.029	47.619	0.00	0.00	46.64	2.32
540	545	0.593128	AGACACATGTTTCCGCTTGC	59.407	50.000	8.38	0.00	0.00	4.01
660	665	0.034896	CAACCCTCACACGCCTTACT	59.965	55.000	0.00	0.00	0.00	2.24
695	702	3.120321	ACTAAGAAACATGACCGTGCA	57.880	42.857	0.00	0.00	0.00	4.57
757	765	1.826385	AGGCCTTACAGTACGTACGT	58.174	50.000	25.98	25.98	0.00	3.57
761	769	2.892852	TGTACAAGGCCTTACAGTACGT	59.107	45.455	26.93	18.77	38.24	3.57
767	775	5.626142	TCTTTCATTGTACAAGGCCTTACA	58.374	37.500	20.00	17.53	0.00	2.41
800	808	8.642908	AAACTCAGTTTATTTTTGTAAGCACC	57.357	30.769	0.00	0.00	33.70	5.01
808	817	9.906111	GCTTCAGAAAAACTCAGTTTATTTTTG	57.094	29.630	2.38	1.33	36.05	2.44
819	828	1.946768	CCGGTGCTTCAGAAAAACTCA	59.053	47.619	0.00	0.00	0.00	3.41
844	853	7.627298	ACTAAGCGTCTCTTCTGTAGAAATA	57.373	36.000	0.00	0.00	36.25	1.40
845	854	6.518208	ACTAAGCGTCTCTTCTGTAGAAAT	57.482	37.500	0.00	0.00	36.25	2.17
846	855	5.961396	ACTAAGCGTCTCTTCTGTAGAAA	57.039	39.130	0.00	0.00	36.25	2.52
847	856	5.961396	AACTAAGCGTCTCTTCTGTAGAA	57.039	39.130	0.00	0.00	36.25	2.10
848	857	7.074507	CTTAACTAAGCGTCTCTTCTGTAGA	57.925	40.000	0.00	0.00	36.25	2.59
863	872	4.715527	ACAGGGTAGACGCTTAACTAAG	57.284	45.455	0.00	0.00	37.00	2.18
864	873	5.256474	AGTACAGGGTAGACGCTTAACTAA	58.744	41.667	8.26	0.00	37.00	2.24
865	874	4.848357	AGTACAGGGTAGACGCTTAACTA	58.152	43.478	8.26	0.00	37.00	2.24
866	875	3.694926	AGTACAGGGTAGACGCTTAACT	58.305	45.455	0.00	1.42	37.00	2.24
867	876	4.446994	AAGTACAGGGTAGACGCTTAAC	57.553	45.455	0.00	0.00	37.00	2.01
868	877	5.945784	TCTTAAGTACAGGGTAGACGCTTAA	59.054	40.000	1.63	0.00	37.00	1.85
915	939	3.008375	TGCAAGATGCTTAGAAGAGGTGT	59.992	43.478	3.78	0.00	45.31	4.16
919	943	5.814764	ACAATGCAAGATGCTTAGAAGAG	57.185	39.130	3.78	0.00	45.31	2.85
921	945	6.426980	TGTACAATGCAAGATGCTTAGAAG	57.573	37.500	3.78	0.00	45.31	2.85
923	947	5.355071	CCTTGTACAATGCAAGATGCTTAGA	59.645	40.000	9.13	0.00	45.31	2.10
924	948	5.575957	CCTTGTACAATGCAAGATGCTTAG	58.424	41.667	9.13	0.00	45.31	2.18
1066	1121	2.831742	CGCCCGCCCACTACTCTA	60.832	66.667	0.00	0.00	0.00	2.43
1221	1281	2.357034	GCGCTCCCTGTTCACGAA	60.357	61.111	0.00	0.00	0.00	3.85
1222	1282	4.717629	CGCGCTCCCTGTTCACGA	62.718	66.667	5.56	0.00	0.00	4.35
1224	1284	3.665675	ATCCGCGCTCCCTGTTCAC	62.666	63.158	5.56	0.00	0.00	3.18
1226	1286	2.892425	CATCCGCGCTCCCTGTTC	60.892	66.667	5.56	0.00	0.00	3.18
1227	1287	4.473520	CCATCCGCGCTCCCTGTT	62.474	66.667	5.56	0.00	0.00	3.16
1699	1788	7.218228	AGAACATGCATGATACAGAAACAAA	57.782	32.000	32.75	0.00	0.00	2.83
1739	1828	6.677781	TGCAAAGTACTATTGGCTGATTAC	57.322	37.500	15.16	2.63	0.00	1.89
1844	1936	9.841880	GTTCAAATTAAAAATGAGGAGGTAGTC	57.158	33.333	0.00	0.00	0.00	2.59
1947	2082	1.205417	CGATGAGCCCAAAATTGCCTT	59.795	47.619	0.00	0.00	0.00	4.35
1952	2087	4.039124	AGAACAAACGATGAGCCCAAAATT	59.961	37.500	0.00	0.00	0.00	1.82
1959	2094	3.067106	TCTGAAGAACAAACGATGAGCC	58.933	45.455	0.00	0.00	0.00	4.70
1960	2095	4.732285	TTCTGAAGAACAAACGATGAGC	57.268	40.909	0.00	0.00	0.00	4.26
1996	2132	8.212317	ACTTCACAAATTTCAAAATTGGAAGG	57.788	30.769	21.15	7.65	40.89	3.46
2391	2559	4.423625	AGATGTGGCCCAAAGTATAGTC	57.576	45.455	0.00	0.00	0.00	2.59
2402	2570	1.079612	GCAAAGCAAGATGTGGCCC	60.080	57.895	0.00	0.00	0.00	5.80
3174	3434	8.558713	TTCCAGCCAGCTCTGATTATATATAT	57.441	34.615	4.03	0.00	36.19	0.86
3175	3435	7.978099	TTCCAGCCAGCTCTGATTATATATA	57.022	36.000	4.03	0.00	36.19	0.86
3336	3609	6.723298	AACAATTATTCCAACACAACTGGA	57.277	33.333	0.00	0.00	41.33	3.86
3340	3613	6.478344	TGCTGAAACAATTATTCCAACACAAC	59.522	34.615	1.86	0.00	0.00	3.32
3369	3650	3.598019	GCCAAATGCCTCTTTGATTCA	57.402	42.857	5.38	0.00	38.17	2.57
3416	3697	3.578716	TGGCTACTTGCAGGATATACTCC	59.421	47.826	1.40	0.00	45.15	3.85
3417	3698	4.322349	CCTGGCTACTTGCAGGATATACTC	60.322	50.000	1.40	0.00	45.15	2.59
3419	3700	3.866449	GCCTGGCTACTTGCAGGATATAC	60.866	52.174	12.43	0.00	45.15	1.47
3420	3701	2.303022	GCCTGGCTACTTGCAGGATATA	59.697	50.000	12.43	0.00	45.15	0.86
3421	3702	1.072965	GCCTGGCTACTTGCAGGATAT	59.927	52.381	12.43	0.00	45.15	1.63
3422	3703	0.469917	GCCTGGCTACTTGCAGGATA	59.530	55.000	12.43	0.00	45.15	2.59
3423	3704	1.225704	GCCTGGCTACTTGCAGGAT	59.774	57.895	12.43	0.00	45.15	3.24
3424	3705	2.671070	GCCTGGCTACTTGCAGGA	59.329	61.111	12.43	0.00	45.15	3.86
3428	3709	2.069273	CATATACGCCTGGCTACTTGC	58.931	52.381	17.92	0.00	41.94	4.01
3437	3718	3.561310	ACTTGCATCAACATATACGCCTG	59.439	43.478	0.00	0.00	0.00	4.85
3466	3750	2.426024	TGGAGTATCTCGTAACCAGCAC	59.574	50.000	0.00	0.00	33.73	4.40
3577	3867	3.827008	CACAGGATGCTAAGCTAGGAA	57.173	47.619	0.00	0.00	42.53	3.36
3616	3911	3.374402	AGCGTGGCGAGCACTAGT	61.374	61.111	6.76	0.00	37.01	2.57
3789	4095	4.463879	CAGCAGAGTGGGCGGAGG	62.464	72.222	0.00	0.00	36.08	4.30
4012	4335	3.747976	AAATGCCCGGAACAGCGC	61.748	61.111	0.73	0.00	0.00	5.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.