Multiple sequence alignment - TraesCS7B01G097100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G097100 chr7B 100.000 4217 0 0 1 4217 111941067 111945283 0.000000e+00 7788.0
1 TraesCS7B01G097100 chr7B 82.671 277 35 10 3220 3488 107613458 107613729 2.540000e-57 233.0
2 TraesCS7B01G097100 chr7A 92.560 2809 143 29 1341 4105 150021836 150024622 0.000000e+00 3969.0
3 TraesCS7B01G097100 chr7A 93.176 1656 87 14 1341 2982 149862759 149861116 0.000000e+00 2409.0
4 TraesCS7B01G097100 chr7A 86.326 841 58 29 311 1129 149863626 149862821 0.000000e+00 863.0
5 TraesCS7B01G097100 chr7A 81.503 692 42 40 285 928 150020956 150021609 1.360000e-134 490.0
6 TraesCS7B01G097100 chr7A 87.943 282 28 3 3031 3306 149861104 149860823 1.130000e-85 327.0
7 TraesCS7B01G097100 chr7A 87.552 241 20 5 22 255 149863972 149863735 1.930000e-68 270.0
8 TraesCS7B01G097100 chr7A 91.228 171 12 3 960 1129 150021606 150021774 3.280000e-56 230.0
9 TraesCS7B01G097100 chr7A 87.755 147 7 2 146 281 150020752 150020898 1.210000e-35 161.0
10 TraesCS7B01G097100 chr7D 94.370 1634 59 19 1373 2986 149181266 149182886 0.000000e+00 2477.0
11 TraesCS7B01G097100 chr7D 93.433 1675 83 8 1331 2982 149085825 149084155 0.000000e+00 2459.0
12 TraesCS7B01G097100 chr7D 86.102 626 33 14 510 1130 149180634 149181210 3.580000e-175 625.0
13 TraesCS7B01G097100 chr7D 93.264 386 22 3 759 1141 149086248 149085864 2.200000e-157 566.0
14 TraesCS7B01G097100 chr7D 85.060 415 45 11 3031 3438 149084143 149083739 1.410000e-109 407.0
15 TraesCS7B01G097100 chr7D 88.561 271 26 2 3033 3303 149182896 149183161 1.460000e-84 324.0
16 TraesCS7B01G097100 chr7D 82.418 364 27 16 144 484 149180295 149180644 2.480000e-72 283.0
17 TraesCS7B01G097100 chr7D 87.170 265 12 10 67 310 149091195 149090932 8.930000e-72 281.0
18 TraesCS7B01G097100 chr2B 85.847 1611 209 16 1381 2974 232291327 232289719 0.000000e+00 1694.0
19 TraesCS7B01G097100 chr2B 85.501 1607 219 12 1381 2974 232261507 232263112 0.000000e+00 1664.0
20 TraesCS7B01G097100 chr2B 89.024 164 18 0 3054 3217 232289672 232289509 1.990000e-48 204.0
21 TraesCS7B01G097100 chr3D 87.792 983 117 1 1993 2975 464808957 464807978 0.000000e+00 1147.0
22 TraesCS7B01G097100 chr3D 82.836 134 23 0 3082 3215 464807886 464807753 2.060000e-23 121.0
23 TraesCS7B01G097100 chr3B 86.864 982 126 1 1993 2974 618155763 618154785 0.000000e+00 1096.0
24 TraesCS7B01G097100 chr3B 85.821 134 19 0 3082 3215 618154691 618154558 4.400000e-30 143.0
25 TraesCS7B01G097100 chr3A 86.660 982 128 1 1993 2974 608195755 608194777 0.000000e+00 1085.0
26 TraesCS7B01G097100 chr2A 86.558 982 132 0 1993 2974 185364107 185363126 0.000000e+00 1083.0
27 TraesCS7B01G097100 chr2A 91.215 535 47 0 1381 1915 185264916 185265450 0.000000e+00 728.0
28 TraesCS7B01G097100 chr2A 91.028 535 48 0 1381 1915 185364736 185364202 0.000000e+00 723.0
29 TraesCS7B01G097100 chr5B 92.193 538 42 0 1378 1915 679311133 679311670 0.000000e+00 761.0
30 TraesCS7B01G097100 chr5B 84.066 182 23 3 3036 3217 679313570 679313745 2.020000e-38 171.0
31 TraesCS7B01G097100 chr5B 76.961 204 29 12 3544 3732 382885418 382885218 2.680000e-17 100.0
32 TraesCS7B01G097100 chr2D 90.841 535 49 0 1381 1915 165485367 165484833 0.000000e+00 717.0
33 TraesCS7B01G097100 chr2D 89.375 160 17 0 1149 1308 621958542 621958383 7.150000e-48 202.0
34 TraesCS7B01G097100 chrUn 88.415 164 19 0 1146 1309 113151671 113151508 9.250000e-47 198.0
35 TraesCS7B01G097100 chr5D 87.500 128 16 0 3089 3216 538262291 538262418 9.450000e-32 148.0
36 TraesCS7B01G097100 chr5D 76.617 201 31 11 3543 3732 360773072 360772877 3.470000e-16 97.1
37 TraesCS7B01G097100 chr5D 82.474 97 14 3 1214 1309 483971128 483971222 9.720000e-12 82.4
38 TraesCS7B01G097100 chr5A 89.565 115 11 1 1146 1260 600516829 600516716 1.220000e-30 145.0
39 TraesCS7B01G097100 chr6A 77.108 166 27 7 3567 3730 214201225 214201381 7.510000e-13 86.1
40 TraesCS7B01G097100 chr6B 95.000 40 2 0 172 211 2827511 2827472 3.520000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G097100 chr7B 111941067 111945283 4216 False 7788.00 7788 100.000000 1 4217 1 chr7B.!!$F2 4216
1 TraesCS7B01G097100 chr7A 150020752 150024622 3870 False 1212.50 3969 88.261500 146 4105 4 chr7A.!!$F1 3959
2 TraesCS7B01G097100 chr7A 149860823 149863972 3149 True 967.25 2409 88.749250 22 3306 4 chr7A.!!$R1 3284
3 TraesCS7B01G097100 chr7D 149083739 149086248 2509 True 1144.00 2459 90.585667 759 3438 3 chr7D.!!$R2 2679
4 TraesCS7B01G097100 chr7D 149180295 149183161 2866 False 927.25 2477 87.862750 144 3303 4 chr7D.!!$F1 3159
5 TraesCS7B01G097100 chr2B 232261507 232263112 1605 False 1664.00 1664 85.501000 1381 2974 1 chr2B.!!$F1 1593
6 TraesCS7B01G097100 chr2B 232289509 232291327 1818 True 949.00 1694 87.435500 1381 3217 2 chr2B.!!$R1 1836
7 TraesCS7B01G097100 chr3D 464807753 464808957 1204 True 634.00 1147 85.314000 1993 3215 2 chr3D.!!$R1 1222
8 TraesCS7B01G097100 chr3B 618154558 618155763 1205 True 619.50 1096 86.342500 1993 3215 2 chr3B.!!$R1 1222
9 TraesCS7B01G097100 chr3A 608194777 608195755 978 True 1085.00 1085 86.660000 1993 2974 1 chr3A.!!$R1 981
10 TraesCS7B01G097100 chr2A 185363126 185364736 1610 True 903.00 1083 88.793000 1381 2974 2 chr2A.!!$R1 1593
11 TraesCS7B01G097100 chr2A 185264916 185265450 534 False 728.00 728 91.215000 1381 1915 1 chr2A.!!$F1 534
12 TraesCS7B01G097100 chr5B 679311133 679313745 2612 False 466.00 761 88.129500 1378 3217 2 chr5B.!!$F1 1839
13 TraesCS7B01G097100 chr2D 165484833 165485367 534 True 717.00 717 90.841000 1381 1915 1 chr2D.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 1016 0.103572 GACCATTCATGCATGCACCC 59.896 55.0 25.37 5.02 0.00 4.61 F
1266 1470 0.036388 GGTCTGAATCCTGCCGACAA 60.036 55.0 0.00 0.00 0.00 3.18 F
1317 1521 0.237498 ACTCGGCAAAGCGCTAAAAC 59.763 50.0 12.05 0.00 41.91 2.43 F
1921 2139 0.250553 CCGCCAAAGGTACCAACAGA 60.251 55.0 15.94 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 3022 1.072648 CCGGGTTCCACCTTCAGTTTA 59.927 52.381 0.00 0.0 38.64 2.01 R
2216 3236 1.146358 GCGGCGGACATGTAGAAGTC 61.146 60.000 9.78 0.0 0.00 3.01 R
2455 3496 2.027625 GAACCGCTTGTCCACCGAG 61.028 63.158 0.00 0.0 0.00 4.63 R
3814 4893 0.314935 ATGGTGCTTTCGTGCAAAGG 59.685 50.000 0.00 0.0 45.12 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.656849 CGTTATCAATATCACTATTGGTTAGCC 58.343 37.037 5.72 0.00 42.96 3.93
45 46 4.432712 GTTAGCCAATATTTTGCACCAGG 58.567 43.478 8.90 0.00 0.00 4.45
48 49 2.735126 GCCAATATTTTGCACCAGGTCG 60.735 50.000 0.00 0.00 0.00 4.79
53 54 1.686355 TTTTGCACCAGGTCGAACAT 58.314 45.000 1.87 0.00 0.00 2.71
54 55 1.234821 TTTGCACCAGGTCGAACATC 58.765 50.000 1.87 0.00 0.00 3.06
56 57 1.745489 GCACCAGGTCGAACATCCC 60.745 63.158 1.87 0.00 0.00 3.85
57 58 1.078426 CACCAGGTCGAACATCCCC 60.078 63.158 1.87 0.00 0.00 4.81
79 80 4.202305 CCCCCTGAATAAACAAAACTGCAA 60.202 41.667 0.00 0.00 0.00 4.08
135 143 5.423704 TCACCGACAATATACAAAGGGAA 57.576 39.130 0.00 0.00 0.00 3.97
140 148 5.977129 CCGACAATATACAAAGGGAAATTGC 59.023 40.000 0.00 0.00 0.00 3.56
258 308 1.565305 CTGCACCTACTGAATCGAGC 58.435 55.000 0.00 0.00 0.00 5.03
271 321 4.071423 TGAATCGAGCTCCATGTCAAAAA 58.929 39.130 8.47 0.00 0.00 1.94
283 333 7.148689 GCTCCATGTCAAAAATTTCAAGTCATC 60.149 37.037 0.00 0.00 0.00 2.92
291 395 8.890718 TCAAAAATTTCAAGTCATCATGCAAAA 58.109 25.926 0.00 0.00 0.00 2.44
350 490 4.128643 CGTAGGAGGAAGAATACGAGACT 58.871 47.826 0.00 0.00 42.66 3.24
351 491 5.295950 CGTAGGAGGAAGAATACGAGACTA 58.704 45.833 0.00 0.00 42.66 2.59
352 492 5.177327 CGTAGGAGGAAGAATACGAGACTAC 59.823 48.000 0.00 0.00 42.66 2.73
353 493 4.128643 AGGAGGAAGAATACGAGACTACG 58.871 47.826 0.00 0.00 39.31 3.51
354 494 4.125703 GGAGGAAGAATACGAGACTACGA 58.874 47.826 0.00 0.00 37.03 3.43
355 495 4.211794 GGAGGAAGAATACGAGACTACGAG 59.788 50.000 0.00 0.00 37.03 4.18
374 517 4.634883 ACGAGTAGTACATCACGAACTGAT 59.365 41.667 2.52 0.00 40.59 2.90
383 526 2.679450 TCACGAACTGATGTTTACCGG 58.321 47.619 0.00 0.00 36.39 5.28
503 668 7.993821 TCTATCTTGCTGTTCTTTATCTTCG 57.006 36.000 0.00 0.00 0.00 3.79
564 729 6.740110 AGTGATCGTCTCGATTAATTAAGCT 58.260 36.000 11.41 0.00 47.00 3.74
565 730 6.638873 AGTGATCGTCTCGATTAATTAAGCTG 59.361 38.462 11.41 5.63 47.00 4.24
566 731 5.402568 TGATCGTCTCGATTAATTAAGCTGC 59.597 40.000 11.41 0.00 47.00 5.25
567 732 4.678622 TCGTCTCGATTAATTAAGCTGCA 58.321 39.130 11.41 0.00 0.00 4.41
568 733 5.289595 TCGTCTCGATTAATTAAGCTGCAT 58.710 37.500 11.41 0.00 0.00 3.96
569 734 5.175673 TCGTCTCGATTAATTAAGCTGCATG 59.824 40.000 11.41 0.00 0.00 4.06
570 735 5.142962 GTCTCGATTAATTAAGCTGCATGC 58.857 41.667 11.82 11.82 43.29 4.06
571 736 4.815846 TCTCGATTAATTAAGCTGCATGCA 59.184 37.500 21.29 21.29 45.94 3.96
572 737 4.847633 TCGATTAATTAAGCTGCATGCAC 58.152 39.130 18.46 13.93 45.94 4.57
573 738 4.576053 TCGATTAATTAAGCTGCATGCACT 59.424 37.500 18.46 16.05 45.94 4.40
574 739 4.673761 CGATTAATTAAGCTGCATGCACTG 59.326 41.667 18.46 9.68 45.94 3.66
594 759 1.285023 GCTCAGGTGTGCTTTGCAG 59.715 57.895 0.00 0.00 40.08 4.41
644 814 3.378427 GGCATGCAAACTAAACTAGAGGG 59.622 47.826 21.36 0.00 0.00 4.30
688 889 1.002544 AGCCACACTCCAAAGCTAGAC 59.997 52.381 0.00 0.00 30.46 2.59
815 1016 0.103572 GACCATTCATGCATGCACCC 59.896 55.000 25.37 5.02 0.00 4.61
906 1110 0.106519 ACTCAGCCCAAGTGCTTGTT 60.107 50.000 10.56 0.00 40.32 2.83
907 1111 1.035139 CTCAGCCCAAGTGCTTGTTT 58.965 50.000 10.56 0.00 40.32 2.83
932 1136 2.224606 CATTCATTCCACCCTCCATCG 58.775 52.381 0.00 0.00 0.00 3.84
967 1171 3.093057 TCCTCAAGAGCTACCTCAAGAC 58.907 50.000 0.00 0.00 40.68 3.01
978 1182 1.346068 ACCTCAAGACACAGAAGCTCC 59.654 52.381 0.00 0.00 0.00 4.70
999 1203 3.609853 CAAAGGACTACAAGCTATGGCA 58.390 45.455 3.10 0.00 41.70 4.92
1115 1319 7.665559 ACACTACAATTTCAATGTATGTCCACT 59.334 33.333 0.00 0.00 33.12 4.00
1130 1334 9.104713 TGTATGTCCACTATCCATTTCATCTAT 57.895 33.333 0.00 0.00 0.00 1.98
1132 1336 6.233434 TGTCCACTATCCATTTCATCTATGC 58.767 40.000 0.00 0.00 0.00 3.14
1150 1354 3.251479 TGCTCTGCATGTTAGTACTGG 57.749 47.619 5.39 0.00 31.71 4.00
1151 1355 2.831526 TGCTCTGCATGTTAGTACTGGA 59.168 45.455 5.39 0.00 31.71 3.86
1154 1358 4.878397 GCTCTGCATGTTAGTACTGGAATT 59.122 41.667 5.39 0.00 0.00 2.17
1155 1359 5.355350 GCTCTGCATGTTAGTACTGGAATTT 59.645 40.000 5.39 0.00 0.00 1.82
1156 1360 6.538742 GCTCTGCATGTTAGTACTGGAATTTA 59.461 38.462 5.39 0.00 0.00 1.40
1158 1362 7.390823 TCTGCATGTTAGTACTGGAATTTACA 58.609 34.615 5.39 0.00 0.00 2.41
1159 1363 7.880713 TCTGCATGTTAGTACTGGAATTTACAA 59.119 33.333 5.39 0.00 0.00 2.41
1160 1364 7.812648 TGCATGTTAGTACTGGAATTTACAAC 58.187 34.615 5.39 0.00 0.00 3.32
1161 1365 7.663905 TGCATGTTAGTACTGGAATTTACAACT 59.336 33.333 5.39 0.00 0.00 3.16
1165 1369 8.347035 TGTTAGTACTGGAATTTACAACTTTGC 58.653 33.333 5.39 0.00 0.00 3.68
1166 1370 8.565416 GTTAGTACTGGAATTTACAACTTTGCT 58.435 33.333 5.39 0.00 0.00 3.91
1167 1371 6.970484 AGTACTGGAATTTACAACTTTGCTG 58.030 36.000 0.00 0.00 0.00 4.41
1168 1372 6.770785 AGTACTGGAATTTACAACTTTGCTGA 59.229 34.615 0.00 0.00 0.00 4.26
1169 1373 6.076981 ACTGGAATTTACAACTTTGCTGAG 57.923 37.500 0.00 0.00 0.00 3.35
1170 1374 5.594317 ACTGGAATTTACAACTTTGCTGAGT 59.406 36.000 0.00 0.00 0.00 3.41
1172 1376 6.966021 TGGAATTTACAACTTTGCTGAGTAC 58.034 36.000 0.00 0.00 0.00 2.73
1174 1378 6.016610 GGAATTTACAACTTTGCTGAGTACCA 60.017 38.462 0.00 0.00 0.00 3.25
1175 1379 6.952773 ATTTACAACTTTGCTGAGTACCAA 57.047 33.333 0.00 0.00 0.00 3.67
1176 1380 6.761099 TTTACAACTTTGCTGAGTACCAAA 57.239 33.333 0.00 0.00 0.00 3.28
1177 1381 6.761099 TTACAACTTTGCTGAGTACCAAAA 57.239 33.333 0.00 0.00 31.29 2.44
1178 1382 5.652994 ACAACTTTGCTGAGTACCAAAAA 57.347 34.783 0.00 0.00 31.29 1.94
1205 1409 2.232239 CGAAAGCCATTTCACACTCG 57.768 50.000 2.07 0.00 44.27 4.18
1206 1410 1.135972 CGAAAGCCATTTCACACTCGG 60.136 52.381 2.07 0.00 44.27 4.63
1207 1411 1.200020 GAAAGCCATTTCACACTCGGG 59.800 52.381 0.00 0.00 43.64 5.14
1208 1412 0.609131 AAGCCATTTCACACTCGGGG 60.609 55.000 0.00 0.00 0.00 5.73
1209 1413 1.002624 GCCATTTCACACTCGGGGA 60.003 57.895 0.00 0.00 0.00 4.81
1210 1414 0.608035 GCCATTTCACACTCGGGGAA 60.608 55.000 0.00 0.00 0.00 3.97
1211 1415 1.453155 CCATTTCACACTCGGGGAAG 58.547 55.000 0.00 0.00 0.00 3.46
1212 1416 1.003118 CCATTTCACACTCGGGGAAGA 59.997 52.381 0.00 0.00 0.00 2.87
1213 1417 2.076863 CATTTCACACTCGGGGAAGAC 58.923 52.381 0.00 0.00 0.00 3.01
1214 1418 1.420430 TTTCACACTCGGGGAAGACT 58.580 50.000 0.00 0.00 0.00 3.24
1215 1419 1.420430 TTCACACTCGGGGAAGACTT 58.580 50.000 0.00 0.00 0.00 3.01
1216 1420 1.420430 TCACACTCGGGGAAGACTTT 58.580 50.000 0.00 0.00 0.00 2.66
1217 1421 1.070134 TCACACTCGGGGAAGACTTTG 59.930 52.381 0.00 0.00 0.00 2.77
1218 1422 0.250338 ACACTCGGGGAAGACTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
1219 1423 0.955919 CACTCGGGGAAGACTTTGCC 60.956 60.000 0.00 0.00 43.57 4.52
1220 1424 1.741770 CTCGGGGAAGACTTTGCCG 60.742 63.158 0.00 0.00 45.12 5.69
1221 1425 2.167398 CTCGGGGAAGACTTTGCCGA 62.167 60.000 0.00 0.00 45.12 5.54
1222 1426 1.741770 CGGGGAAGACTTTGCCGAG 60.742 63.158 0.00 0.00 45.12 4.63
1223 1427 1.375326 GGGGAAGACTTTGCCGAGT 59.625 57.895 0.00 0.00 45.12 4.18
1224 1428 0.611714 GGGGAAGACTTTGCCGAGTA 59.388 55.000 0.00 0.00 45.12 2.59
1225 1429 1.209747 GGGGAAGACTTTGCCGAGTAT 59.790 52.381 0.00 0.00 45.12 2.12
1226 1430 2.355818 GGGGAAGACTTTGCCGAGTATT 60.356 50.000 0.00 0.00 45.12 1.89
1227 1431 2.678336 GGGAAGACTTTGCCGAGTATTG 59.322 50.000 1.73 0.00 34.94 1.90
1228 1432 3.335579 GGAAGACTTTGCCGAGTATTGT 58.664 45.455 1.73 0.00 31.71 2.71
1229 1433 3.751698 GGAAGACTTTGCCGAGTATTGTT 59.248 43.478 1.73 0.00 31.71 2.83
1230 1434 4.142881 GGAAGACTTTGCCGAGTATTGTTC 60.143 45.833 1.73 0.00 31.71 3.18
1231 1435 4.273148 AGACTTTGCCGAGTATTGTTCT 57.727 40.909 0.00 0.00 0.00 3.01
1232 1436 4.246458 AGACTTTGCCGAGTATTGTTCTC 58.754 43.478 0.00 0.00 0.00 2.87
1239 1443 1.941325 GAGTATTGTTCTCGGCCCAG 58.059 55.000 0.00 0.00 0.00 4.45
1240 1444 0.541863 AGTATTGTTCTCGGCCCAGG 59.458 55.000 0.00 0.00 0.00 4.45
1241 1445 0.463833 GTATTGTTCTCGGCCCAGGG 60.464 60.000 0.00 0.00 0.00 4.45
1242 1446 0.912487 TATTGTTCTCGGCCCAGGGT 60.912 55.000 7.55 0.00 0.00 4.34
1243 1447 0.912487 ATTGTTCTCGGCCCAGGGTA 60.912 55.000 7.55 0.00 0.00 3.69
1244 1448 1.833787 TTGTTCTCGGCCCAGGGTAC 61.834 60.000 7.55 0.00 0.00 3.34
1245 1449 1.988406 GTTCTCGGCCCAGGGTACT 60.988 63.158 7.55 0.00 0.00 2.73
1246 1450 1.684734 TTCTCGGCCCAGGGTACTC 60.685 63.158 7.55 0.00 0.00 2.59
1247 1451 3.528370 CTCGGCCCAGGGTACTCG 61.528 72.222 7.55 6.83 0.00 4.18
1250 1454 3.468140 GGCCCAGGGTACTCGGTC 61.468 72.222 7.55 0.00 0.00 4.79
1251 1455 2.363925 GCCCAGGGTACTCGGTCT 60.364 66.667 7.55 0.00 0.00 3.85
1252 1456 2.722201 GCCCAGGGTACTCGGTCTG 61.722 68.421 7.55 0.00 0.00 3.51
1253 1457 1.000019 CCCAGGGTACTCGGTCTGA 60.000 63.158 0.00 0.00 0.00 3.27
1254 1458 0.613853 CCCAGGGTACTCGGTCTGAA 60.614 60.000 0.00 0.00 0.00 3.02
1255 1459 1.486211 CCAGGGTACTCGGTCTGAAT 58.514 55.000 0.00 0.00 0.00 2.57
1256 1460 1.409427 CCAGGGTACTCGGTCTGAATC 59.591 57.143 0.00 0.00 0.00 2.52
1257 1461 1.409427 CAGGGTACTCGGTCTGAATCC 59.591 57.143 0.00 0.00 0.00 3.01
1258 1462 1.288335 AGGGTACTCGGTCTGAATCCT 59.712 52.381 0.00 0.00 0.00 3.24
1259 1463 1.409427 GGGTACTCGGTCTGAATCCTG 59.591 57.143 0.00 0.00 0.00 3.86
1260 1464 1.202428 GGTACTCGGTCTGAATCCTGC 60.202 57.143 0.00 0.00 0.00 4.85
1261 1465 1.112113 TACTCGGTCTGAATCCTGCC 58.888 55.000 0.00 0.00 0.00 4.85
1262 1466 1.227089 CTCGGTCTGAATCCTGCCG 60.227 63.158 0.00 0.00 43.32 5.69
1263 1467 2.892640 CGGTCTGAATCCTGCCGA 59.107 61.111 0.00 0.00 44.57 5.54
1264 1468 1.519455 CGGTCTGAATCCTGCCGAC 60.519 63.158 0.00 0.00 44.57 4.79
1265 1469 1.596934 GGTCTGAATCCTGCCGACA 59.403 57.895 0.00 0.00 0.00 4.35
1266 1470 0.036388 GGTCTGAATCCTGCCGACAA 60.036 55.000 0.00 0.00 0.00 3.18
1267 1471 1.610624 GGTCTGAATCCTGCCGACAAA 60.611 52.381 0.00 0.00 0.00 2.83
1268 1472 2.359900 GTCTGAATCCTGCCGACAAAT 58.640 47.619 0.00 0.00 0.00 2.32
1269 1473 2.352960 GTCTGAATCCTGCCGACAAATC 59.647 50.000 0.00 0.00 0.00 2.17
1270 1474 2.237143 TCTGAATCCTGCCGACAAATCT 59.763 45.455 0.00 0.00 0.00 2.40
1271 1475 2.353889 CTGAATCCTGCCGACAAATCTG 59.646 50.000 0.00 0.00 0.00 2.90
1272 1476 2.027285 TGAATCCTGCCGACAAATCTGA 60.027 45.455 0.00 0.00 0.00 3.27
1273 1477 2.029838 ATCCTGCCGACAAATCTGAC 57.970 50.000 0.00 0.00 0.00 3.51
1274 1478 0.976641 TCCTGCCGACAAATCTGACT 59.023 50.000 0.00 0.00 0.00 3.41
1275 1479 1.347707 TCCTGCCGACAAATCTGACTT 59.652 47.619 0.00 0.00 0.00 3.01
1276 1480 2.154462 CCTGCCGACAAATCTGACTTT 58.846 47.619 0.00 0.00 0.00 2.66
1277 1481 3.007506 TCCTGCCGACAAATCTGACTTTA 59.992 43.478 0.00 0.00 0.00 1.85
1278 1482 3.125316 CCTGCCGACAAATCTGACTTTAC 59.875 47.826 0.00 0.00 0.00 2.01
1279 1483 3.997021 CTGCCGACAAATCTGACTTTACT 59.003 43.478 0.00 0.00 0.00 2.24
1280 1484 3.745975 TGCCGACAAATCTGACTTTACTG 59.254 43.478 0.00 0.00 0.00 2.74
1281 1485 3.994392 GCCGACAAATCTGACTTTACTGA 59.006 43.478 0.00 0.00 0.00 3.41
1282 1486 4.092091 GCCGACAAATCTGACTTTACTGAG 59.908 45.833 0.00 0.00 0.00 3.35
1283 1487 5.470368 CCGACAAATCTGACTTTACTGAGA 58.530 41.667 0.00 0.00 0.00 3.27
1284 1488 5.926542 CCGACAAATCTGACTTTACTGAGAA 59.073 40.000 0.00 0.00 0.00 2.87
1285 1489 6.128795 CCGACAAATCTGACTTTACTGAGAAC 60.129 42.308 0.00 0.00 0.00 3.01
1286 1490 6.128795 CGACAAATCTGACTTTACTGAGAACC 60.129 42.308 0.00 0.00 0.00 3.62
1287 1491 6.591935 ACAAATCTGACTTTACTGAGAACCA 58.408 36.000 0.00 0.00 0.00 3.67
1289 1493 6.672266 AATCTGACTTTACTGAGAACCAGA 57.328 37.500 0.00 0.00 45.78 3.86
1290 1494 6.672266 ATCTGACTTTACTGAGAACCAGAA 57.328 37.500 0.00 0.00 45.78 3.02
1291 1495 5.844004 TCTGACTTTACTGAGAACCAGAAC 58.156 41.667 0.00 0.00 45.78 3.01
1292 1496 5.362717 TCTGACTTTACTGAGAACCAGAACA 59.637 40.000 0.00 0.00 45.78 3.18
1293 1497 5.357257 TGACTTTACTGAGAACCAGAACAC 58.643 41.667 0.00 0.00 45.78 3.32
1294 1498 4.369182 ACTTTACTGAGAACCAGAACACG 58.631 43.478 0.00 0.00 45.78 4.49
1295 1499 3.380479 TTACTGAGAACCAGAACACGG 57.620 47.619 0.00 0.00 45.78 4.94
1296 1500 0.393077 ACTGAGAACCAGAACACGGG 59.607 55.000 0.00 0.00 45.78 5.28
1297 1501 0.320771 CTGAGAACCAGAACACGGGG 60.321 60.000 0.00 0.00 45.78 5.73
1298 1502 0.761323 TGAGAACCAGAACACGGGGA 60.761 55.000 0.00 0.00 0.00 4.81
1299 1503 0.320508 GAGAACCAGAACACGGGGAC 60.321 60.000 0.00 0.00 0.00 4.46
1300 1504 0.763223 AGAACCAGAACACGGGGACT 60.763 55.000 0.00 0.00 0.00 3.85
1301 1505 0.320508 GAACCAGAACACGGGGACTC 60.321 60.000 0.00 0.00 0.00 3.36
1302 1506 2.095978 AACCAGAACACGGGGACTCG 62.096 60.000 0.00 0.00 0.00 4.18
1303 1507 2.261671 CAGAACACGGGGACTCGG 59.738 66.667 0.00 0.00 0.00 4.63
1304 1508 3.692406 AGAACACGGGGACTCGGC 61.692 66.667 0.00 0.00 0.00 5.54
1305 1509 3.998672 GAACACGGGGACTCGGCA 61.999 66.667 0.00 0.00 0.00 5.69
1306 1510 3.524648 GAACACGGGGACTCGGCAA 62.525 63.158 0.00 0.00 0.00 4.52
1307 1511 2.999739 GAACACGGGGACTCGGCAAA 63.000 60.000 0.00 0.00 0.00 3.68
1308 1512 2.742372 CACGGGGACTCGGCAAAG 60.742 66.667 0.00 0.00 0.00 2.77
1309 1513 4.699522 ACGGGGACTCGGCAAAGC 62.700 66.667 0.00 0.00 0.00 3.51
1313 1517 2.125673 GGACTCGGCAAAGCGCTA 60.126 61.111 12.05 0.00 41.91 4.26
1314 1518 1.740296 GGACTCGGCAAAGCGCTAA 60.740 57.895 12.05 0.00 41.91 3.09
1315 1519 1.296056 GGACTCGGCAAAGCGCTAAA 61.296 55.000 12.05 0.00 41.91 1.85
1316 1520 0.515564 GACTCGGCAAAGCGCTAAAA 59.484 50.000 12.05 0.00 41.91 1.52
1317 1521 0.237498 ACTCGGCAAAGCGCTAAAAC 59.763 50.000 12.05 0.00 41.91 2.43
1318 1522 0.454452 CTCGGCAAAGCGCTAAAACC 60.454 55.000 12.05 9.62 41.91 3.27
1319 1523 1.167155 TCGGCAAAGCGCTAAAACCA 61.167 50.000 12.05 0.00 41.91 3.67
1320 1524 0.729140 CGGCAAAGCGCTAAAACCAG 60.729 55.000 12.05 3.47 41.91 4.00
1321 1525 0.388520 GGCAAAGCGCTAAAACCAGG 60.389 55.000 12.05 0.00 41.91 4.45
1322 1526 0.596082 GCAAAGCGCTAAAACCAGGA 59.404 50.000 12.05 0.00 37.77 3.86
1323 1527 1.202348 GCAAAGCGCTAAAACCAGGAT 59.798 47.619 12.05 0.00 37.77 3.24
1324 1528 2.732282 GCAAAGCGCTAAAACCAGGATC 60.732 50.000 12.05 0.00 37.77 3.36
1325 1529 2.487762 CAAAGCGCTAAAACCAGGATCA 59.512 45.455 12.05 0.00 0.00 2.92
1329 1533 2.032178 GCGCTAAAACCAGGATCACATC 59.968 50.000 0.00 0.00 0.00 3.06
1349 1559 1.096967 CATGCATGGTGCTCGCCTTA 61.097 55.000 19.40 0.00 45.31 2.69
1368 1579 6.766467 CGCCTTAATCAAAACCTTATACCTCT 59.234 38.462 0.00 0.00 0.00 3.69
1369 1580 7.254795 CGCCTTAATCAAAACCTTATACCTCTG 60.255 40.741 0.00 0.00 0.00 3.35
1370 1581 7.468768 GCCTTAATCAAAACCTTATACCTCTGC 60.469 40.741 0.00 0.00 0.00 4.26
1371 1582 7.556275 CCTTAATCAAAACCTTATACCTCTGCA 59.444 37.037 0.00 0.00 0.00 4.41
1609 1820 2.273449 CAGTGCCCCATCCAGACC 59.727 66.667 0.00 0.00 0.00 3.85
1736 1947 4.555709 TTCCCAAGCACGGCGTGT 62.556 61.111 36.68 22.68 36.37 4.49
1921 2139 0.250553 CCGCCAAAGGTACCAACAGA 60.251 55.000 15.94 0.00 0.00 3.41
1922 2140 0.872388 CGCCAAAGGTACCAACAGAC 59.128 55.000 15.94 0.00 0.00 3.51
1924 2142 2.289195 CGCCAAAGGTACCAACAGACTA 60.289 50.000 15.94 0.00 0.00 2.59
1925 2143 3.618997 CGCCAAAGGTACCAACAGACTAT 60.619 47.826 15.94 0.00 0.00 2.12
1926 2144 4.382254 CGCCAAAGGTACCAACAGACTATA 60.382 45.833 15.94 0.00 0.00 1.31
1927 2145 4.874396 GCCAAAGGTACCAACAGACTATAC 59.126 45.833 15.94 0.00 0.00 1.47
1969 2989 4.097589 ACGTGCCAACTACTAATAGAGGTC 59.902 45.833 0.00 0.00 32.86 3.85
2002 3022 2.967362 TGACACGTCACAGACACTTTT 58.033 42.857 0.00 0.00 34.14 2.27
2216 3236 2.125269 CGTTCTACCCCAAGGCCG 60.125 66.667 0.00 0.00 36.11 6.13
2911 3952 2.487532 CGACCCGGTAGAGCGGAAT 61.488 63.158 21.16 8.99 0.00 3.01
3337 4405 7.174946 TCAGTCCCTTGACATTACAATTTTCTC 59.825 37.037 0.00 0.00 44.33 2.87
3341 4409 8.576442 TCCCTTGACATTACAATTTTCTCTTTC 58.424 33.333 0.00 0.00 0.00 2.62
3342 4410 7.538678 CCCTTGACATTACAATTTTCTCTTTCG 59.461 37.037 0.00 0.00 0.00 3.46
3391 4459 3.293311 AGCAGTTTGTGATGACAATGC 57.707 42.857 13.67 13.67 43.77 3.56
3400 4468 3.018856 GTGATGACAATGCATTGAGGGA 58.981 45.455 38.99 21.78 40.14 4.20
3406 4474 7.724951 TGATGACAATGCATTGAGGGATATTAA 59.275 33.333 38.99 13.25 40.14 1.40
3407 4475 7.894753 TGACAATGCATTGAGGGATATTAAA 57.105 32.000 38.99 9.20 40.14 1.52
3408 4476 8.481492 TGACAATGCATTGAGGGATATTAAAT 57.519 30.769 38.99 16.69 40.14 1.40
3464 4532 7.093322 AGCTGATAATTTTCTTGGATGTCAC 57.907 36.000 0.00 0.00 0.00 3.67
3635 4705 9.898152 AATTTGTAGAAAATTCAGACCCAAAAA 57.102 25.926 0.00 0.00 0.00 1.94
3637 4707 6.811954 TGTAGAAAATTCAGACCCAAAAACC 58.188 36.000 0.00 0.00 0.00 3.27
3638 4708 6.609616 TGTAGAAAATTCAGACCCAAAAACCT 59.390 34.615 0.00 0.00 0.00 3.50
3639 4709 5.917462 AGAAAATTCAGACCCAAAAACCTG 58.083 37.500 0.00 0.00 0.00 4.00
3640 4710 5.660864 AGAAAATTCAGACCCAAAAACCTGA 59.339 36.000 0.00 0.00 34.25 3.86
3641 4711 4.937201 AATTCAGACCCAAAAACCTGAC 57.063 40.909 0.00 0.00 35.63 3.51
3642 4712 1.961793 TCAGACCCAAAAACCTGACG 58.038 50.000 0.00 0.00 31.45 4.35
3643 4713 1.210967 TCAGACCCAAAAACCTGACGT 59.789 47.619 0.00 0.00 31.45 4.34
3644 4714 2.021457 CAGACCCAAAAACCTGACGTT 58.979 47.619 0.00 0.00 35.70 3.99
3645 4715 3.118334 TCAGACCCAAAAACCTGACGTTA 60.118 43.478 0.00 0.00 33.05 3.18
3646 4716 3.002965 CAGACCCAAAAACCTGACGTTAC 59.997 47.826 0.00 0.00 33.05 2.50
3647 4717 3.118149 AGACCCAAAAACCTGACGTTACT 60.118 43.478 0.00 0.00 33.05 2.24
3648 4718 3.208594 ACCCAAAAACCTGACGTTACTC 58.791 45.455 0.00 0.00 33.05 2.59
3659 4729 4.100707 TGACGTTACTCGGTCAATTAGG 57.899 45.455 0.00 0.00 44.69 2.69
3665 4735 5.583457 CGTTACTCGGTCAATTAGGGAAAAT 59.417 40.000 0.00 0.00 35.71 1.82
3725 4804 2.252714 CTAGAGCTTGGGGATAGGGAC 58.747 57.143 0.00 0.00 0.00 4.46
3752 4831 1.398390 CACGGAGCCTGACATAAAAGC 59.602 52.381 0.00 0.00 0.00 3.51
3758 4837 1.173043 CCTGACATAAAAGCGCCCAA 58.827 50.000 2.29 0.00 0.00 4.12
3759 4838 1.133025 CCTGACATAAAAGCGCCCAAG 59.867 52.381 2.29 0.00 0.00 3.61
3804 4883 7.147949 CCCAATGGATCTCATTTATATCAAGCC 60.148 40.741 0.00 0.00 43.04 4.35
3806 4885 9.021807 CAATGGATCTCATTTATATCAAGCCTT 57.978 33.333 6.67 0.00 43.04 4.35
3813 4892 9.645059 TCTCATTTATATCAAGCCTTATCTTCG 57.355 33.333 0.00 0.00 0.00 3.79
3814 4893 8.256611 TCATTTATATCAAGCCTTATCTTCGC 57.743 34.615 0.00 0.00 0.00 4.70
3830 4909 2.010817 CGCCTTTGCACGAAAGCAC 61.011 57.895 0.00 0.00 45.61 4.40
3889 4968 1.446272 CCAGCTTCGACTTCCCGTC 60.446 63.158 0.00 0.00 39.33 4.79
3914 4993 2.796032 GCCTATCAAAATGCTCAACGCC 60.796 50.000 0.00 0.00 38.05 5.68
3934 5013 1.060266 CGCGATCACTTGCAGAGAAAG 59.940 52.381 0.00 0.00 0.00 2.62
3935 5014 1.202009 GCGATCACTTGCAGAGAAAGC 60.202 52.381 0.00 2.46 0.00 3.51
3936 5015 1.060266 CGATCACTTGCAGAGAAAGCG 59.940 52.381 0.00 2.31 33.85 4.68
3994 5083 4.192317 GTCCTCCACTTTACTTGCCTATG 58.808 47.826 0.00 0.00 0.00 2.23
4028 5117 8.387813 ACCAAAAACCTCCAACAATCTATACTA 58.612 33.333 0.00 0.00 0.00 1.82
4031 5120 9.975218 AAAAACCTCCAACAATCTATACTATGT 57.025 29.630 0.00 0.00 0.00 2.29
4033 5122 6.525629 ACCTCCAACAATCTATACTATGTGC 58.474 40.000 0.00 0.00 0.00 4.57
4040 5129 3.026630 TCTATACTATGTGCGCTTGGC 57.973 47.619 9.73 0.00 43.96 4.52
4078 5167 3.633525 TGCAATGTTCTTCTCCATATGCC 59.366 43.478 0.00 0.00 30.75 4.40
4096 5185 2.604174 CCGTTGCGTCACCCAGAAC 61.604 63.158 0.00 0.00 0.00 3.01
4105 5194 1.118965 TCACCCAGAACGAGAGGCAA 61.119 55.000 0.00 0.00 0.00 4.52
4106 5195 0.951040 CACCCAGAACGAGAGGCAAC 60.951 60.000 0.00 0.00 0.00 4.17
4118 5207 4.935630 GGCAACTTTTTCCGGACG 57.064 55.556 1.83 0.00 0.00 4.79
4119 5208 2.027325 GGCAACTTTTTCCGGACGT 58.973 52.632 1.83 0.00 0.00 4.34
4120 5209 1.228533 GGCAACTTTTTCCGGACGTA 58.771 50.000 1.83 0.00 0.00 3.57
4121 5210 1.196127 GGCAACTTTTTCCGGACGTAG 59.804 52.381 1.83 3.75 0.00 3.51
4122 5211 1.196127 GCAACTTTTTCCGGACGTAGG 59.804 52.381 1.83 3.31 0.00 3.18
4123 5212 1.802365 CAACTTTTTCCGGACGTAGGG 59.198 52.381 1.83 4.00 0.00 3.53
4124 5213 1.341080 ACTTTTTCCGGACGTAGGGA 58.659 50.000 1.83 6.35 0.00 4.20
4125 5214 1.274447 ACTTTTTCCGGACGTAGGGAG 59.726 52.381 1.83 0.00 33.01 4.30
4126 5215 1.274447 CTTTTTCCGGACGTAGGGAGT 59.726 52.381 1.83 0.00 33.01 3.85
4127 5216 2.214376 TTTTCCGGACGTAGGGAGTA 57.786 50.000 1.83 0.00 33.01 2.59
4128 5217 2.442236 TTTCCGGACGTAGGGAGTAT 57.558 50.000 1.83 0.00 33.01 2.12
4129 5218 2.442236 TTCCGGACGTAGGGAGTATT 57.558 50.000 1.83 0.00 33.01 1.89
4130 5219 3.576078 TTCCGGACGTAGGGAGTATTA 57.424 47.619 1.83 0.00 33.01 0.98
4131 5220 3.795688 TCCGGACGTAGGGAGTATTAT 57.204 47.619 0.00 0.00 0.00 1.28
4132 5221 3.415212 TCCGGACGTAGGGAGTATTATG 58.585 50.000 0.00 0.00 0.00 1.90
4133 5222 3.072915 TCCGGACGTAGGGAGTATTATGA 59.927 47.826 0.00 0.00 0.00 2.15
4134 5223 3.822735 CCGGACGTAGGGAGTATTATGAA 59.177 47.826 0.00 0.00 0.00 2.57
4135 5224 4.279169 CCGGACGTAGGGAGTATTATGAAA 59.721 45.833 0.00 0.00 0.00 2.69
4136 5225 5.047519 CCGGACGTAGGGAGTATTATGAAAT 60.048 44.000 0.00 0.00 0.00 2.17
4137 5226 6.091437 CGGACGTAGGGAGTATTATGAAATC 58.909 44.000 0.00 0.00 0.00 2.17
4138 5227 6.091437 GGACGTAGGGAGTATTATGAAATCG 58.909 44.000 0.00 0.00 0.00 3.34
4139 5228 6.294397 GGACGTAGGGAGTATTATGAAATCGT 60.294 42.308 0.00 0.00 0.00 3.73
4140 5229 7.094634 GGACGTAGGGAGTATTATGAAATCGTA 60.095 40.741 0.00 0.00 0.00 3.43
4141 5230 8.345724 ACGTAGGGAGTATTATGAAATCGTAT 57.654 34.615 0.00 0.00 0.00 3.06
4142 5231 8.242053 ACGTAGGGAGTATTATGAAATCGTATG 58.758 37.037 0.00 0.00 0.00 2.39
4143 5232 7.701078 CGTAGGGAGTATTATGAAATCGTATGG 59.299 40.741 0.00 0.00 0.00 2.74
4144 5233 7.792364 AGGGAGTATTATGAAATCGTATGGA 57.208 36.000 0.00 0.00 0.00 3.41
4145 5234 7.841956 AGGGAGTATTATGAAATCGTATGGAG 58.158 38.462 0.00 0.00 0.00 3.86
4146 5235 7.455008 AGGGAGTATTATGAAATCGTATGGAGT 59.545 37.037 0.00 0.00 0.00 3.85
4147 5236 8.746530 GGGAGTATTATGAAATCGTATGGAGTA 58.253 37.037 0.00 0.00 0.00 2.59
4160 5249 7.229228 TCGTATGGAGTAATTGAATTTGACG 57.771 36.000 0.00 0.00 0.00 4.35
4161 5250 6.814644 TCGTATGGAGTAATTGAATTTGACGT 59.185 34.615 0.00 0.00 0.00 4.34
4162 5251 6.899771 CGTATGGAGTAATTGAATTTGACGTG 59.100 38.462 0.00 0.00 0.00 4.49
4163 5252 7.201487 CGTATGGAGTAATTGAATTTGACGTGA 60.201 37.037 0.00 0.00 0.00 4.35
4164 5253 6.869315 TGGAGTAATTGAATTTGACGTGAA 57.131 33.333 0.00 0.00 0.00 3.18
4165 5254 7.265647 TGGAGTAATTGAATTTGACGTGAAA 57.734 32.000 1.83 1.83 0.00 2.69
4166 5255 7.708051 TGGAGTAATTGAATTTGACGTGAAAA 58.292 30.769 3.82 0.00 0.00 2.29
4167 5256 8.356657 TGGAGTAATTGAATTTGACGTGAAAAT 58.643 29.630 3.82 0.00 0.00 1.82
4168 5257 9.834628 GGAGTAATTGAATTTGACGTGAAAATA 57.165 29.630 3.82 0.00 0.00 1.40
4173 5262 7.906611 TTGAATTTGACGTGAAAATACTGTG 57.093 32.000 3.82 0.00 0.00 3.66
4174 5263 7.022055 TGAATTTGACGTGAAAATACTGTGT 57.978 32.000 3.82 0.00 0.00 3.72
4175 5264 7.476667 TGAATTTGACGTGAAAATACTGTGTT 58.523 30.769 3.82 0.00 0.00 3.32
4176 5265 7.430793 TGAATTTGACGTGAAAATACTGTGTTG 59.569 33.333 3.82 0.00 0.00 3.33
4177 5266 4.203950 TGACGTGAAAATACTGTGTTGC 57.796 40.909 0.00 0.00 0.00 4.17
4178 5267 3.002862 TGACGTGAAAATACTGTGTTGCC 59.997 43.478 0.00 0.00 0.00 4.52
4179 5268 2.946329 ACGTGAAAATACTGTGTTGCCA 59.054 40.909 0.00 0.00 0.00 4.92
4180 5269 3.378742 ACGTGAAAATACTGTGTTGCCAA 59.621 39.130 0.00 0.00 0.00 4.52
4181 5270 4.142359 ACGTGAAAATACTGTGTTGCCAAA 60.142 37.500 0.00 0.00 0.00 3.28
4182 5271 4.800993 CGTGAAAATACTGTGTTGCCAAAA 59.199 37.500 0.00 0.00 0.00 2.44
4183 5272 5.051774 CGTGAAAATACTGTGTTGCCAAAAG 60.052 40.000 0.00 0.00 0.00 2.27
4184 5273 4.808364 TGAAAATACTGTGTTGCCAAAAGC 59.192 37.500 0.00 0.00 44.14 3.51
4204 5293 4.873810 ACAGCACGTGCCTGCCAA 62.874 61.111 35.51 0.00 43.38 4.52
4205 5294 3.594775 CAGCACGTGCCTGCCAAA 61.595 61.111 35.51 0.00 43.38 3.28
4206 5295 2.832661 AGCACGTGCCTGCCAAAA 60.833 55.556 35.51 0.00 43.38 2.44
4207 5296 2.105930 GCACGTGCCTGCCAAAAA 59.894 55.556 30.12 0.00 34.31 1.94
4208 5297 1.950630 GCACGTGCCTGCCAAAAAG 60.951 57.895 30.12 0.00 34.31 2.27
4209 5298 1.437160 CACGTGCCTGCCAAAAAGT 59.563 52.632 0.82 0.00 0.00 2.66
4210 5299 0.179113 CACGTGCCTGCCAAAAAGTT 60.179 50.000 0.82 0.00 0.00 2.66
4211 5300 1.066303 CACGTGCCTGCCAAAAAGTTA 59.934 47.619 0.82 0.00 0.00 2.24
4212 5301 1.066454 ACGTGCCTGCCAAAAAGTTAC 59.934 47.619 0.00 0.00 0.00 2.50
4213 5302 1.601914 CGTGCCTGCCAAAAAGTTACC 60.602 52.381 0.00 0.00 0.00 2.85
4214 5303 0.671251 TGCCTGCCAAAAAGTTACCG 59.329 50.000 0.00 0.00 0.00 4.02
4215 5304 0.955905 GCCTGCCAAAAAGTTACCGA 59.044 50.000 0.00 0.00 0.00 4.69
4216 5305 1.338655 GCCTGCCAAAAAGTTACCGAA 59.661 47.619 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.204570 GCTAACCAATAGTGATATTGATAACGT 57.795 33.333 9.09 0.00 39.20 3.99
3 4 8.656849 GGCTAACCAATAGTGATATTGATAACG 58.343 37.037 9.09 0.00 39.20 3.18
4 5 9.502091 TGGCTAACCAATAGTGATATTGATAAC 57.498 33.333 9.09 0.18 45.37 1.89
22 23 4.432712 CTGGTGCAAAATATTGGCTAACC 58.567 43.478 12.10 11.94 37.02 2.85
23 24 4.081697 ACCTGGTGCAAAATATTGGCTAAC 60.082 41.667 0.00 4.78 37.02 2.34
24 25 4.093011 ACCTGGTGCAAAATATTGGCTAA 58.907 39.130 0.00 0.00 37.02 3.09
25 26 3.699038 GACCTGGTGCAAAATATTGGCTA 59.301 43.478 2.82 0.00 37.02 3.93
26 27 2.497273 GACCTGGTGCAAAATATTGGCT 59.503 45.455 2.82 0.00 37.02 4.75
27 28 2.735126 CGACCTGGTGCAAAATATTGGC 60.735 50.000 2.82 5.62 37.02 4.52
29 30 4.165779 GTTCGACCTGGTGCAAAATATTG 58.834 43.478 2.82 0.00 39.65 1.90
33 34 1.686355 TGTTCGACCTGGTGCAAAAT 58.314 45.000 2.82 0.00 0.00 1.82
37 38 1.003839 GGATGTTCGACCTGGTGCA 60.004 57.895 2.82 0.00 0.00 4.57
56 57 3.323403 TGCAGTTTTGTTTATTCAGGGGG 59.677 43.478 0.00 0.00 0.00 5.40
57 58 4.599047 TGCAGTTTTGTTTATTCAGGGG 57.401 40.909 0.00 0.00 0.00 4.79
62 63 6.826893 TCTTGCTTGCAGTTTTGTTTATTC 57.173 33.333 0.00 0.00 0.00 1.75
128 136 1.102978 CCGATCGGCAATTTCCCTTT 58.897 50.000 23.37 0.00 0.00 3.11
135 143 1.752694 CCCAACCCGATCGGCAATT 60.753 57.895 29.12 18.34 33.26 2.32
140 148 1.449601 CTTGACCCAACCCGATCGG 60.450 63.158 27.65 27.65 37.81 4.18
258 308 7.868922 TGATGACTTGAAATTTTTGACATGGAG 59.131 33.333 0.00 0.00 0.00 3.86
271 321 5.531634 ACGTTTTGCATGATGACTTGAAAT 58.468 33.333 0.00 0.00 0.00 2.17
283 333 3.042189 CAGTACACCAACGTTTTGCATG 58.958 45.455 0.00 0.00 0.00 4.06
291 395 4.202182 ACACTATGTTCAGTACACCAACGT 60.202 41.667 0.00 0.00 40.19 3.99
325 465 3.624777 TCGTATTCTTCCTCCTACGGTT 58.375 45.455 0.00 0.00 37.97 4.44
348 488 8.323014 ATCAGTTCGTGATGTACTACTCGTAGT 61.323 40.741 13.63 13.63 44.82 2.73
350 490 5.170748 TCAGTTCGTGATGTACTACTCGTA 58.829 41.667 0.00 0.00 0.00 3.43
351 491 3.999001 TCAGTTCGTGATGTACTACTCGT 59.001 43.478 0.00 0.00 0.00 4.18
352 492 4.595198 TCAGTTCGTGATGTACTACTCG 57.405 45.455 0.00 1.59 0.00 4.18
374 517 3.512978 GGTCGCTAACCGGTAAACA 57.487 52.632 8.00 0.00 38.58 2.83
383 526 5.857822 AAATAAGTTCAGTGGTCGCTAAC 57.142 39.130 0.00 0.00 0.00 2.34
503 668 6.322491 CAGCAAGTTTAATTAGTTAGCCCAC 58.678 40.000 0.00 0.00 0.00 4.61
569 734 3.720193 CACACCTGAGCGCAGTGC 61.720 66.667 16.62 4.58 46.98 4.40
570 735 3.720193 GCACACCTGAGCGCAGTG 61.720 66.667 16.62 15.59 40.63 3.66
571 736 2.947938 AAAGCACACCTGAGCGCAGT 62.948 55.000 16.62 1.82 40.63 4.40
572 737 2.256591 AAAGCACACCTGAGCGCAG 61.257 57.895 11.47 10.92 41.93 5.18
573 738 2.203195 AAAGCACACCTGAGCGCA 60.203 55.556 11.47 0.00 36.73 6.09
574 739 2.253452 CAAAGCACACCTGAGCGC 59.747 61.111 0.00 0.00 36.73 5.92
575 740 2.253452 GCAAAGCACACCTGAGCG 59.747 61.111 0.00 0.00 36.73 5.03
594 759 2.374995 GGTCACGTACCGTTTCCGC 61.375 63.158 0.00 0.00 38.32 5.54
621 786 3.063997 CCTCTAGTTTAGTTTGCATGCCG 59.936 47.826 16.68 0.00 0.00 5.69
644 814 1.203928 CCAGTGCACTCGATCGATTC 58.796 55.000 18.64 10.96 0.00 2.52
815 1016 4.455906 GCCGGGCCATTTGCTTGG 62.456 66.667 8.12 0.00 40.92 3.61
906 1110 3.831911 GGAGGGTGGAATGAATGTTGAAA 59.168 43.478 0.00 0.00 0.00 2.69
907 1111 3.181424 TGGAGGGTGGAATGAATGTTGAA 60.181 43.478 0.00 0.00 0.00 2.69
932 1136 0.613292 TGAGGAGCAGAGGACCAGAC 60.613 60.000 0.00 0.00 0.00 3.51
967 1171 2.557920 AGTCCTTTGGAGCTTCTGTG 57.442 50.000 0.00 0.00 29.39 3.66
978 1182 3.609853 TGCCATAGCTTGTAGTCCTTTG 58.390 45.455 0.00 0.00 40.80 2.77
1030 1234 2.027314 CGCCATGAGGAGAGAGCG 59.973 66.667 0.00 0.00 36.74 5.03
1115 1319 6.117975 TGCAGAGCATAGATGAAATGGATA 57.882 37.500 0.00 0.00 31.71 2.59
1130 1334 2.831526 TCCAGTACTAACATGCAGAGCA 59.168 45.455 0.00 0.00 44.86 4.26
1132 1336 6.992063 AAATTCCAGTACTAACATGCAGAG 57.008 37.500 0.00 0.00 0.00 3.35
1141 1345 8.564574 CAGCAAAGTTGTAAATTCCAGTACTAA 58.435 33.333 0.00 0.00 0.00 2.24
1142 1346 7.934665 TCAGCAAAGTTGTAAATTCCAGTACTA 59.065 33.333 0.00 0.00 0.00 1.82
1143 1347 6.770785 TCAGCAAAGTTGTAAATTCCAGTACT 59.229 34.615 0.00 0.00 0.00 2.73
1144 1348 6.966021 TCAGCAAAGTTGTAAATTCCAGTAC 58.034 36.000 0.00 0.00 0.00 2.73
1146 1350 5.594317 ACTCAGCAAAGTTGTAAATTCCAGT 59.406 36.000 0.00 0.00 0.00 4.00
1148 1352 6.016610 GGTACTCAGCAAAGTTGTAAATTCCA 60.017 38.462 0.00 0.00 0.00 3.53
1150 1354 6.966021 TGGTACTCAGCAAAGTTGTAAATTC 58.034 36.000 0.00 0.00 0.00 2.17
1151 1355 6.952773 TGGTACTCAGCAAAGTTGTAAATT 57.047 33.333 0.00 0.00 0.00 1.82
1186 1390 1.135972 CCGAGTGTGAAATGGCTTTCG 60.136 52.381 0.00 0.00 43.10 3.46
1187 1391 1.200020 CCCGAGTGTGAAATGGCTTTC 59.800 52.381 0.00 3.44 41.01 2.62
1188 1392 1.247567 CCCGAGTGTGAAATGGCTTT 58.752 50.000 0.00 0.00 0.00 3.51
1189 1393 0.609131 CCCCGAGTGTGAAATGGCTT 60.609 55.000 0.00 0.00 0.00 4.35
1190 1394 1.002134 CCCCGAGTGTGAAATGGCT 60.002 57.895 0.00 0.00 0.00 4.75
1191 1395 0.608035 TTCCCCGAGTGTGAAATGGC 60.608 55.000 0.00 0.00 0.00 4.40
1192 1396 1.003118 TCTTCCCCGAGTGTGAAATGG 59.997 52.381 0.00 0.00 0.00 3.16
1193 1397 2.076863 GTCTTCCCCGAGTGTGAAATG 58.923 52.381 0.00 0.00 0.00 2.32
1194 1398 1.978580 AGTCTTCCCCGAGTGTGAAAT 59.021 47.619 0.00 0.00 0.00 2.17
1195 1399 1.420430 AGTCTTCCCCGAGTGTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
1196 1400 1.420430 AAGTCTTCCCCGAGTGTGAA 58.580 50.000 0.00 0.00 0.00 3.18
1197 1401 1.070134 CAAAGTCTTCCCCGAGTGTGA 59.930 52.381 0.00 0.00 0.00 3.58
1198 1402 1.512926 CAAAGTCTTCCCCGAGTGTG 58.487 55.000 0.00 0.00 0.00 3.82
1199 1403 0.250338 GCAAAGTCTTCCCCGAGTGT 60.250 55.000 0.00 0.00 0.00 3.55
1200 1404 0.955919 GGCAAAGTCTTCCCCGAGTG 60.956 60.000 0.00 0.00 0.00 3.51
1201 1405 1.375326 GGCAAAGTCTTCCCCGAGT 59.625 57.895 0.00 0.00 0.00 4.18
1202 1406 1.741770 CGGCAAAGTCTTCCCCGAG 60.742 63.158 15.23 0.00 41.34 4.63
1203 1407 2.167398 CTCGGCAAAGTCTTCCCCGA 62.167 60.000 19.48 19.48 44.85 5.14
1204 1408 1.741770 CTCGGCAAAGTCTTCCCCG 60.742 63.158 14.50 14.50 40.25 5.73
1205 1409 0.611714 TACTCGGCAAAGTCTTCCCC 59.388 55.000 0.00 0.00 0.00 4.81
1206 1410 2.678336 CAATACTCGGCAAAGTCTTCCC 59.322 50.000 0.00 0.00 0.00 3.97
1207 1411 3.335579 ACAATACTCGGCAAAGTCTTCC 58.664 45.455 0.00 0.00 0.00 3.46
1208 1412 4.691216 AGAACAATACTCGGCAAAGTCTTC 59.309 41.667 0.00 0.00 0.00 2.87
1209 1413 4.642429 AGAACAATACTCGGCAAAGTCTT 58.358 39.130 0.00 0.00 0.00 3.01
1210 1414 4.246458 GAGAACAATACTCGGCAAAGTCT 58.754 43.478 0.00 0.00 0.00 3.24
1211 1415 4.585619 GAGAACAATACTCGGCAAAGTC 57.414 45.455 0.00 0.00 0.00 3.01
1220 1424 1.473434 CCTGGGCCGAGAACAATACTC 60.473 57.143 17.59 0.00 0.00 2.59
1221 1425 0.541863 CCTGGGCCGAGAACAATACT 59.458 55.000 17.59 0.00 0.00 2.12
1222 1426 0.463833 CCCTGGGCCGAGAACAATAC 60.464 60.000 17.59 0.00 0.00 1.89
1223 1427 0.912487 ACCCTGGGCCGAGAACAATA 60.912 55.000 17.59 0.00 0.00 1.90
1224 1428 0.912487 TACCCTGGGCCGAGAACAAT 60.912 55.000 17.59 0.00 0.00 2.71
1225 1429 1.536907 TACCCTGGGCCGAGAACAA 60.537 57.895 17.59 0.00 0.00 2.83
1226 1430 2.120940 TACCCTGGGCCGAGAACA 59.879 61.111 17.59 0.00 0.00 3.18
1227 1431 1.957765 GAGTACCCTGGGCCGAGAAC 61.958 65.000 17.59 11.09 0.00 3.01
1228 1432 1.684734 GAGTACCCTGGGCCGAGAA 60.685 63.158 17.59 0.00 0.00 2.87
1229 1433 2.043248 GAGTACCCTGGGCCGAGA 60.043 66.667 17.59 0.00 0.00 4.04
1230 1434 3.528370 CGAGTACCCTGGGCCGAG 61.528 72.222 14.08 7.99 0.00 4.63
1233 1437 3.468140 GACCGAGTACCCTGGGCC 61.468 72.222 14.08 3.42 40.06 5.80
1234 1438 2.363925 AGACCGAGTACCCTGGGC 60.364 66.667 14.08 0.00 40.06 5.36
1235 1439 0.613853 TTCAGACCGAGTACCCTGGG 60.614 60.000 12.28 12.28 42.02 4.45
1236 1440 1.409427 GATTCAGACCGAGTACCCTGG 59.591 57.143 0.00 0.00 0.00 4.45
1237 1441 1.409427 GGATTCAGACCGAGTACCCTG 59.591 57.143 0.00 0.00 0.00 4.45
1238 1442 1.288335 AGGATTCAGACCGAGTACCCT 59.712 52.381 0.00 0.00 0.00 4.34
1239 1443 1.409427 CAGGATTCAGACCGAGTACCC 59.591 57.143 0.00 0.00 0.00 3.69
1240 1444 1.202428 GCAGGATTCAGACCGAGTACC 60.202 57.143 0.00 0.00 0.00 3.34
1241 1445 1.202428 GGCAGGATTCAGACCGAGTAC 60.202 57.143 0.00 0.00 0.00 2.73
1242 1446 1.112113 GGCAGGATTCAGACCGAGTA 58.888 55.000 0.00 0.00 0.00 2.59
1243 1447 1.901085 GGCAGGATTCAGACCGAGT 59.099 57.895 0.00 0.00 0.00 4.18
1244 1448 1.227089 CGGCAGGATTCAGACCGAG 60.227 63.158 4.93 0.00 46.71 4.63
1245 1449 2.892640 CGGCAGGATTCAGACCGA 59.107 61.111 4.93 0.00 46.71 4.69
1246 1450 1.519455 GTCGGCAGGATTCAGACCG 60.519 63.158 0.00 0.00 45.15 4.79
1247 1451 0.036388 TTGTCGGCAGGATTCAGACC 60.036 55.000 0.00 0.00 0.00 3.85
1248 1452 1.808411 TTTGTCGGCAGGATTCAGAC 58.192 50.000 0.00 0.00 0.00 3.51
1249 1453 2.237143 AGATTTGTCGGCAGGATTCAGA 59.763 45.455 0.00 0.00 0.00 3.27
1250 1454 2.353889 CAGATTTGTCGGCAGGATTCAG 59.646 50.000 0.00 0.00 0.00 3.02
1251 1455 2.027285 TCAGATTTGTCGGCAGGATTCA 60.027 45.455 0.00 0.00 0.00 2.57
1252 1456 2.352960 GTCAGATTTGTCGGCAGGATTC 59.647 50.000 0.00 0.00 0.00 2.52
1253 1457 2.026822 AGTCAGATTTGTCGGCAGGATT 60.027 45.455 0.00 0.00 0.00 3.01
1254 1458 1.556911 AGTCAGATTTGTCGGCAGGAT 59.443 47.619 0.00 0.00 0.00 3.24
1255 1459 0.976641 AGTCAGATTTGTCGGCAGGA 59.023 50.000 0.00 0.00 0.00 3.86
1256 1460 1.813513 AAGTCAGATTTGTCGGCAGG 58.186 50.000 0.00 0.00 0.00 4.85
1257 1461 3.997021 AGTAAAGTCAGATTTGTCGGCAG 59.003 43.478 0.00 0.00 0.00 4.85
1258 1462 3.745975 CAGTAAAGTCAGATTTGTCGGCA 59.254 43.478 0.00 0.00 0.00 5.69
1259 1463 3.994392 TCAGTAAAGTCAGATTTGTCGGC 59.006 43.478 0.00 0.00 0.00 5.54
1260 1464 5.470368 TCTCAGTAAAGTCAGATTTGTCGG 58.530 41.667 0.00 0.00 0.00 4.79
1261 1465 6.128795 GGTTCTCAGTAAAGTCAGATTTGTCG 60.129 42.308 0.00 0.00 0.00 4.35
1262 1466 6.706270 TGGTTCTCAGTAAAGTCAGATTTGTC 59.294 38.462 0.00 0.00 0.00 3.18
1263 1467 6.591935 TGGTTCTCAGTAAAGTCAGATTTGT 58.408 36.000 0.00 0.00 0.00 2.83
1264 1468 6.931281 TCTGGTTCTCAGTAAAGTCAGATTTG 59.069 38.462 0.00 0.00 43.76 2.32
1265 1469 7.067496 TCTGGTTCTCAGTAAAGTCAGATTT 57.933 36.000 0.00 0.00 43.76 2.17
1266 1470 6.672266 TCTGGTTCTCAGTAAAGTCAGATT 57.328 37.500 0.00 0.00 43.76 2.40
1267 1471 6.042093 TGTTCTGGTTCTCAGTAAAGTCAGAT 59.958 38.462 0.00 0.00 43.76 2.90
1268 1472 5.362717 TGTTCTGGTTCTCAGTAAAGTCAGA 59.637 40.000 0.00 0.00 43.76 3.27
1269 1473 5.463724 GTGTTCTGGTTCTCAGTAAAGTCAG 59.536 44.000 0.00 0.00 43.76 3.51
1270 1474 5.357257 GTGTTCTGGTTCTCAGTAAAGTCA 58.643 41.667 0.00 0.00 43.76 3.41
1271 1475 4.444720 CGTGTTCTGGTTCTCAGTAAAGTC 59.555 45.833 0.00 0.00 43.76 3.01
1272 1476 4.369182 CGTGTTCTGGTTCTCAGTAAAGT 58.631 43.478 0.00 0.00 43.76 2.66
1273 1477 3.741344 CCGTGTTCTGGTTCTCAGTAAAG 59.259 47.826 0.00 0.00 43.76 1.85
1274 1478 3.493699 CCCGTGTTCTGGTTCTCAGTAAA 60.494 47.826 0.00 0.00 43.76 2.01
1275 1479 2.036733 CCCGTGTTCTGGTTCTCAGTAA 59.963 50.000 0.00 0.00 43.76 2.24
1276 1480 1.616865 CCCGTGTTCTGGTTCTCAGTA 59.383 52.381 0.00 0.00 43.76 2.74
1277 1481 0.393077 CCCGTGTTCTGGTTCTCAGT 59.607 55.000 0.00 0.00 43.76 3.41
1278 1482 0.320771 CCCCGTGTTCTGGTTCTCAG 60.321 60.000 0.00 0.00 44.68 3.35
1279 1483 0.761323 TCCCCGTGTTCTGGTTCTCA 60.761 55.000 0.00 0.00 0.00 3.27
1280 1484 0.320508 GTCCCCGTGTTCTGGTTCTC 60.321 60.000 0.00 0.00 0.00 2.87
1281 1485 0.763223 AGTCCCCGTGTTCTGGTTCT 60.763 55.000 0.00 0.00 0.00 3.01
1282 1486 0.320508 GAGTCCCCGTGTTCTGGTTC 60.321 60.000 0.00 0.00 0.00 3.62
1283 1487 1.752833 GAGTCCCCGTGTTCTGGTT 59.247 57.895 0.00 0.00 0.00 3.67
1284 1488 2.571216 CGAGTCCCCGTGTTCTGGT 61.571 63.158 0.00 0.00 0.00 4.00
1285 1489 2.261671 CGAGTCCCCGTGTTCTGG 59.738 66.667 0.00 0.00 0.00 3.86
1286 1490 2.261671 CCGAGTCCCCGTGTTCTG 59.738 66.667 0.00 0.00 0.00 3.02
1287 1491 3.692406 GCCGAGTCCCCGTGTTCT 61.692 66.667 0.00 0.00 0.00 3.01
1288 1492 2.999739 TTTGCCGAGTCCCCGTGTTC 63.000 60.000 0.00 0.00 0.00 3.18
1289 1493 3.109592 TTTGCCGAGTCCCCGTGTT 62.110 57.895 0.00 0.00 0.00 3.32
1290 1494 3.530910 CTTTGCCGAGTCCCCGTGT 62.531 63.158 0.00 0.00 0.00 4.49
1291 1495 2.742372 CTTTGCCGAGTCCCCGTG 60.742 66.667 0.00 0.00 0.00 4.94
1292 1496 4.699522 GCTTTGCCGAGTCCCCGT 62.700 66.667 0.00 0.00 0.00 5.28
1303 1507 0.596082 TCCTGGTTTTAGCGCTTTGC 59.404 50.000 18.68 3.59 46.98 3.68
1304 1508 2.487762 TGATCCTGGTTTTAGCGCTTTG 59.512 45.455 18.68 0.00 0.00 2.77
1305 1509 2.488153 GTGATCCTGGTTTTAGCGCTTT 59.512 45.455 18.68 0.00 0.00 3.51
1306 1510 2.084546 GTGATCCTGGTTTTAGCGCTT 58.915 47.619 18.68 0.00 0.00 4.68
1307 1511 1.003118 TGTGATCCTGGTTTTAGCGCT 59.997 47.619 17.26 17.26 0.00 5.92
1308 1512 1.448985 TGTGATCCTGGTTTTAGCGC 58.551 50.000 0.00 0.00 0.00 5.92
1309 1513 2.614057 GGATGTGATCCTGGTTTTAGCG 59.386 50.000 0.00 0.00 46.19 4.26
1349 1559 6.183360 GCATGCAGAGGTATAAGGTTTTGATT 60.183 38.462 14.21 0.00 0.00 2.57
1609 1820 1.355916 GTAGACGTAGCTCTGGCCG 59.644 63.158 0.00 0.00 39.73 6.13
1922 2140 9.313323 CGTTTTACAAACATGTGACTTGTATAG 57.687 33.333 17.89 9.24 35.91 1.31
1924 2142 7.642194 CACGTTTTACAAACATGTGACTTGTAT 59.358 33.333 17.89 4.91 35.91 2.29
1925 2143 6.962116 CACGTTTTACAAACATGTGACTTGTA 59.038 34.615 14.69 14.69 35.09 2.41
1926 2144 5.797934 CACGTTTTACAAACATGTGACTTGT 59.202 36.000 16.39 16.39 37.13 3.16
1927 2145 5.275695 GCACGTTTTACAAACATGTGACTTG 60.276 40.000 0.00 2.82 0.00 3.16
1991 3011 5.357032 CCACCTTCAGTTTAAAAGTGTCTGT 59.643 40.000 0.00 0.00 33.51 3.41
2002 3022 1.072648 CCGGGTTCCACCTTCAGTTTA 59.927 52.381 0.00 0.00 38.64 2.01
2216 3236 1.146358 GCGGCGGACATGTAGAAGTC 61.146 60.000 9.78 0.00 0.00 3.01
2455 3496 2.027625 GAACCGCTTGTCCACCGAG 61.028 63.158 0.00 0.00 0.00 4.63
2662 3703 3.184581 CCGTGTAGTTGAACTTCAAGAGC 59.815 47.826 16.59 1.04 37.00 4.09
2722 3763 2.359230 GGCAGCACGAGGAGCTTT 60.359 61.111 0.00 0.00 41.14 3.51
3045 4087 4.524328 TGATACGTATGAGCATGGACAGAT 59.476 41.667 13.97 0.00 0.00 2.90
3317 4385 8.289618 TCGAAAGAGAAAATTGTAATGTCAAGG 58.710 33.333 0.00 0.00 34.84 3.61
3341 4409 9.885743 CAAGTGAAGAAAACAAACTTAAATTCG 57.114 29.630 0.00 0.00 30.20 3.34
3448 4516 9.643693 GTTAAATGATGTGACATCCAAGAAAAT 57.356 29.630 21.68 4.95 0.00 1.82
3464 4532 8.606040 ATTTGAACAACTTGGGTTAAATGATG 57.394 30.769 0.00 0.00 33.88 3.07
3558 4627 0.670854 GAACCCTCTGCCTTCGTGAC 60.671 60.000 0.00 0.00 0.00 3.67
3614 4684 6.923508 CAGGTTTTTGGGTCTGAATTTTCTAC 59.076 38.462 0.00 0.00 0.00 2.59
3635 4705 1.321474 TTGACCGAGTAACGTCAGGT 58.679 50.000 0.00 0.00 40.78 4.00
3637 4707 4.103357 CCTAATTGACCGAGTAACGTCAG 58.897 47.826 0.00 0.00 40.78 3.51
3638 4708 3.119388 CCCTAATTGACCGAGTAACGTCA 60.119 47.826 0.00 0.00 40.78 4.35
3639 4709 3.129287 TCCCTAATTGACCGAGTAACGTC 59.871 47.826 0.00 0.00 40.78 4.34
3640 4710 3.091545 TCCCTAATTGACCGAGTAACGT 58.908 45.455 0.00 0.00 40.78 3.99
3641 4711 3.788333 TCCCTAATTGACCGAGTAACG 57.212 47.619 0.00 0.00 42.18 3.18
3642 4712 6.596497 TGATTTTCCCTAATTGACCGAGTAAC 59.404 38.462 0.00 0.00 0.00 2.50
3643 4713 6.713276 TGATTTTCCCTAATTGACCGAGTAA 58.287 36.000 0.00 0.00 0.00 2.24
3644 4714 6.302535 TGATTTTCCCTAATTGACCGAGTA 57.697 37.500 0.00 0.00 0.00 2.59
3645 4715 5.174037 TGATTTTCCCTAATTGACCGAGT 57.826 39.130 0.00 0.00 0.00 4.18
3646 4716 5.648092 ACTTGATTTTCCCTAATTGACCGAG 59.352 40.000 0.00 0.00 0.00 4.63
3647 4717 5.566469 ACTTGATTTTCCCTAATTGACCGA 58.434 37.500 0.00 0.00 0.00 4.69
3648 4718 5.897377 ACTTGATTTTCCCTAATTGACCG 57.103 39.130 0.00 0.00 0.00 4.79
3704 4783 1.866943 TCCCTATCCCCAAGCTCTAGT 59.133 52.381 0.00 0.00 0.00 2.57
3725 4804 0.946221 GTCAGGCTCCGTGTGTCTTG 60.946 60.000 0.00 0.00 0.00 3.02
3759 4838 4.717313 GAGTGGTGGTTCCGGGCC 62.717 72.222 0.00 5.17 39.52 5.80
3764 4843 2.764637 ATTGGGCGAGTGGTGGTTCC 62.765 60.000 0.00 0.00 0.00 3.62
3804 4883 1.999735 TCGTGCAAAGGCGAAGATAAG 59.000 47.619 0.00 0.00 45.35 1.73
3806 4885 2.087501 TTCGTGCAAAGGCGAAGATA 57.912 45.000 5.84 0.00 45.35 1.98
3811 4890 2.183504 TGCTTTCGTGCAAAGGCGA 61.184 52.632 0.00 0.00 45.35 5.54
3812 4891 2.010817 GTGCTTTCGTGCAAAGGCG 61.011 57.895 0.00 0.00 45.12 5.52
3813 4892 1.661509 GGTGCTTTCGTGCAAAGGC 60.662 57.895 0.00 0.00 45.12 4.35
3814 4893 0.314935 ATGGTGCTTTCGTGCAAAGG 59.685 50.000 0.00 0.00 45.12 3.11
3830 4909 9.613428 TTCTAACATGATTAAGTTAGTCCATGG 57.387 33.333 4.97 4.97 44.61 3.66
3889 4968 4.501559 CGTTGAGCATTTTGATAGGCATTG 59.498 41.667 0.00 0.00 0.00 2.82
3914 4993 1.060266 CTTTCTCTGCAAGTGATCGCG 59.940 52.381 0.00 0.00 36.21 5.87
3943 5025 5.372343 TGAAAGCCTATGTGGACATGTAT 57.628 39.130 0.00 0.00 37.15 2.29
4028 5117 2.574929 CAATGGCCAAGCGCACAT 59.425 55.556 10.96 2.77 40.31 3.21
4031 5120 3.961225 ATCCCAATGGCCAAGCGCA 62.961 57.895 10.96 0.00 40.31 6.09
4033 5122 1.606885 AACATCCCAATGGCCAAGCG 61.607 55.000 10.96 0.00 37.19 4.68
4040 5129 0.537653 TGCATGCAACATCCCAATGG 59.462 50.000 20.30 0.00 37.19 3.16
4078 5167 2.280524 TTCTGGGTGACGCAACGG 60.281 61.111 3.39 0.00 0.00 4.44
4096 5185 0.517316 CCGGAAAAAGTTGCCTCTCG 59.483 55.000 0.00 0.00 0.00 4.04
4105 5194 1.274447 CTCCCTACGTCCGGAAAAAGT 59.726 52.381 5.23 7.06 0.00 2.66
4106 5195 1.274447 ACTCCCTACGTCCGGAAAAAG 59.726 52.381 5.23 3.15 0.00 2.27
4107 5196 1.341080 ACTCCCTACGTCCGGAAAAA 58.659 50.000 5.23 0.00 0.00 1.94
4108 5197 2.214376 TACTCCCTACGTCCGGAAAA 57.786 50.000 5.23 0.00 0.00 2.29
4109 5198 2.442236 ATACTCCCTACGTCCGGAAA 57.558 50.000 5.23 0.00 0.00 3.13
4110 5199 2.442236 AATACTCCCTACGTCCGGAA 57.558 50.000 5.23 0.00 0.00 4.30
4111 5200 3.072915 TCATAATACTCCCTACGTCCGGA 59.927 47.826 0.00 0.00 0.00 5.14
4112 5201 3.415212 TCATAATACTCCCTACGTCCGG 58.585 50.000 0.00 0.00 0.00 5.14
4113 5202 5.443185 TTTCATAATACTCCCTACGTCCG 57.557 43.478 0.00 0.00 0.00 4.79
4114 5203 6.091437 CGATTTCATAATACTCCCTACGTCC 58.909 44.000 0.00 0.00 0.00 4.79
4115 5204 6.675987 ACGATTTCATAATACTCCCTACGTC 58.324 40.000 0.00 0.00 0.00 4.34
4116 5205 6.645790 ACGATTTCATAATACTCCCTACGT 57.354 37.500 0.00 0.00 0.00 3.57
4117 5206 7.701078 CCATACGATTTCATAATACTCCCTACG 59.299 40.741 0.00 0.00 0.00 3.51
4118 5207 8.746530 TCCATACGATTTCATAATACTCCCTAC 58.253 37.037 0.00 0.00 0.00 3.18
4119 5208 8.888836 TCCATACGATTTCATAATACTCCCTA 57.111 34.615 0.00 0.00 0.00 3.53
4120 5209 7.455008 ACTCCATACGATTTCATAATACTCCCT 59.545 37.037 0.00 0.00 0.00 4.20
4121 5210 7.612677 ACTCCATACGATTTCATAATACTCCC 58.387 38.462 0.00 0.00 0.00 4.30
4134 5223 8.335356 CGTCAAATTCAATTACTCCATACGATT 58.665 33.333 0.00 0.00 0.00 3.34
4135 5224 7.494625 ACGTCAAATTCAATTACTCCATACGAT 59.505 33.333 0.00 0.00 0.00 3.73
4136 5225 6.814644 ACGTCAAATTCAATTACTCCATACGA 59.185 34.615 0.00 0.00 0.00 3.43
4137 5226 6.899771 CACGTCAAATTCAATTACTCCATACG 59.100 38.462 0.00 0.00 0.00 3.06
4138 5227 7.970384 TCACGTCAAATTCAATTACTCCATAC 58.030 34.615 0.00 0.00 0.00 2.39
4139 5228 8.554835 TTCACGTCAAATTCAATTACTCCATA 57.445 30.769 0.00 0.00 0.00 2.74
4140 5229 7.447374 TTCACGTCAAATTCAATTACTCCAT 57.553 32.000 0.00 0.00 0.00 3.41
4141 5230 6.869315 TTCACGTCAAATTCAATTACTCCA 57.131 33.333 0.00 0.00 0.00 3.86
4142 5231 8.742554 ATTTTCACGTCAAATTCAATTACTCC 57.257 30.769 0.00 0.00 0.00 3.85
4147 5236 8.967218 CACAGTATTTTCACGTCAAATTCAATT 58.033 29.630 7.39 0.00 0.00 2.32
4148 5237 8.134895 ACACAGTATTTTCACGTCAAATTCAAT 58.865 29.630 7.39 0.00 0.00 2.57
4149 5238 7.476667 ACACAGTATTTTCACGTCAAATTCAA 58.523 30.769 7.39 0.00 0.00 2.69
4150 5239 7.022055 ACACAGTATTTTCACGTCAAATTCA 57.978 32.000 7.39 0.00 0.00 2.57
4151 5240 7.565073 GCAACACAGTATTTTCACGTCAAATTC 60.565 37.037 7.39 3.70 0.00 2.17
4152 5241 6.198216 GCAACACAGTATTTTCACGTCAAATT 59.802 34.615 7.39 0.00 0.00 1.82
4153 5242 5.685511 GCAACACAGTATTTTCACGTCAAAT 59.314 36.000 7.27 7.27 0.00 2.32
4154 5243 5.031578 GCAACACAGTATTTTCACGTCAAA 58.968 37.500 0.00 0.00 0.00 2.69
4155 5244 4.496673 GGCAACACAGTATTTTCACGTCAA 60.497 41.667 0.00 0.00 0.00 3.18
4156 5245 3.002862 GGCAACACAGTATTTTCACGTCA 59.997 43.478 0.00 0.00 0.00 4.35
4157 5246 3.002862 TGGCAACACAGTATTTTCACGTC 59.997 43.478 0.00 0.00 46.17 4.34
4158 5247 2.946329 TGGCAACACAGTATTTTCACGT 59.054 40.909 0.00 0.00 46.17 4.49
4159 5248 3.617540 TGGCAACACAGTATTTTCACG 57.382 42.857 0.00 0.00 46.17 4.35
4172 5261 2.348605 GCTGTCCGCTTTTGGCAACA 62.349 55.000 0.00 0.00 41.91 3.33
4173 5262 1.661509 GCTGTCCGCTTTTGGCAAC 60.662 57.895 0.00 0.00 41.91 4.17
4174 5263 2.124060 TGCTGTCCGCTTTTGGCAA 61.124 52.632 0.00 0.00 41.91 4.52
4175 5264 2.518112 TGCTGTCCGCTTTTGGCA 60.518 55.556 0.00 0.00 41.91 4.92
4176 5265 2.050077 GTGCTGTCCGCTTTTGGC 60.050 61.111 0.00 0.00 40.11 4.52
4177 5266 2.252260 CGTGCTGTCCGCTTTTGG 59.748 61.111 0.00 0.00 40.11 3.28
4178 5267 1.369209 CACGTGCTGTCCGCTTTTG 60.369 57.895 0.82 0.00 40.11 2.44
4179 5268 3.022287 CACGTGCTGTCCGCTTTT 58.978 55.556 0.82 0.00 40.11 2.27
4180 5269 3.649986 GCACGTGCTGTCCGCTTT 61.650 61.111 32.55 0.00 40.11 3.51
4187 5276 4.873810 TTGGCAGGCACGTGCTGT 62.874 61.111 36.84 23.30 43.45 4.40
4188 5277 2.625973 TTTTTGGCAGGCACGTGCTG 62.626 55.000 36.84 30.51 43.45 4.41
4189 5278 2.354074 CTTTTTGGCAGGCACGTGCT 62.354 55.000 36.84 21.66 43.45 4.40
4190 5279 1.950630 CTTTTTGGCAGGCACGTGC 60.951 57.895 32.15 32.15 43.19 5.34
4191 5280 0.179113 AACTTTTTGGCAGGCACGTG 60.179 50.000 12.28 12.28 0.00 4.49
4192 5281 1.066454 GTAACTTTTTGGCAGGCACGT 59.934 47.619 0.00 0.00 0.00 4.49
4193 5282 1.601914 GGTAACTTTTTGGCAGGCACG 60.602 52.381 0.00 0.00 0.00 5.34
4194 5283 1.601914 CGGTAACTTTTTGGCAGGCAC 60.602 52.381 0.00 0.00 0.00 5.01
4195 5284 0.671251 CGGTAACTTTTTGGCAGGCA 59.329 50.000 0.00 0.00 0.00 4.75
4196 5285 0.955905 TCGGTAACTTTTTGGCAGGC 59.044 50.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.