Multiple sequence alignment - TraesCS7B01G094000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G094000 chr7B 100.000 3163 0 0 1 3163 107821036 107824198 0.000000e+00 5842.0
1 TraesCS7B01G094000 chr7B 81.615 2328 364 41 417 2726 114938575 114940856 0.000000e+00 1869.0
2 TraesCS7B01G094000 chr7B 78.367 490 93 9 969 1456 743457982 743457504 3.960000e-79 305.0
3 TraesCS7B01G094000 chr7B 97.727 176 4 0 2988 3163 450452548 450452723 1.430000e-78 303.0
4 TraesCS7B01G094000 chr7B 97.175 177 5 0 2987 3163 521055148 521054972 1.840000e-77 300.0
5 TraesCS7B01G094000 chr7B 97.159 176 5 0 2988 3163 385091448 385091623 6.630000e-77 298.0
6 TraesCS7B01G094000 chr7B 85.882 85 9 3 279 361 157202878 157202961 1.560000e-13 87.9
7 TraesCS7B01G094000 chr7B 94.231 52 3 0 2936 2987 391073496 391073445 2.620000e-11 80.5
8 TraesCS7B01G094000 chr7D 94.197 2309 121 7 1 2303 143976774 143974473 0.000000e+00 3509.0
9 TraesCS7B01G094000 chr7D 82.312 2318 360 35 427 2727 152947009 152949293 0.000000e+00 1964.0
10 TraesCS7B01G094000 chr7D 92.762 525 30 2 2299 2820 143950214 143949695 0.000000e+00 752.0
11 TraesCS7B01G094000 chr7D 80.549 401 54 15 2222 2614 101797812 101797428 1.440000e-73 287.0
12 TraesCS7B01G094000 chr7A 89.276 2816 261 29 1 2792 146024427 146027225 0.000000e+00 3489.0
13 TraesCS7B01G094000 chr7A 79.532 1368 237 32 576 1925 105778691 105777349 0.000000e+00 935.0
14 TraesCS7B01G094000 chr7A 76.100 682 141 17 832 1508 736496776 736497440 1.410000e-88 337.0
15 TraesCS7B01G094000 chr7A 76.316 646 97 32 1977 2614 105766402 105765805 8.580000e-76 294.0
16 TraesCS7B01G094000 chr7A 81.793 368 46 13 2251 2614 105776959 105776609 3.990000e-74 289.0
17 TraesCS7B01G094000 chr7A 78.862 369 58 10 2360 2726 154064138 154064488 6.820000e-57 231.0
18 TraesCS7B01G094000 chr7A 86.885 61 6 2 37 96 405482773 405482714 2.040000e-07 67.6
19 TraesCS7B01G094000 chrUn 81.359 1958 333 23 416 2354 29901514 29899570 0.000000e+00 1565.0
20 TraesCS7B01G094000 chr4B 80.389 1183 221 11 691 1867 667838900 667840077 0.000000e+00 889.0
21 TraesCS7B01G094000 chr4B 81.887 922 154 12 691 1605 667837199 667838114 0.000000e+00 765.0
22 TraesCS7B01G094000 chr4B 79.798 990 184 11 900 1878 667814972 667815956 0.000000e+00 706.0
23 TraesCS7B01G094000 chr4B 89.535 86 9 0 1 86 487664168 487664253 3.340000e-20 110.0
24 TraesCS7B01G094000 chr3B 97.740 177 4 0 2987 3163 623226033 623225857 3.960000e-79 305.0
25 TraesCS7B01G094000 chr3B 97.175 177 5 0 2987 3163 598435832 598435656 1.840000e-77 300.0
26 TraesCS7B01G094000 chr3B 91.525 177 15 0 2987 3163 242805819 242805643 8.760000e-61 244.0
27 TraesCS7B01G094000 chr3B 82.883 111 18 1 9 119 550318715 550318824 7.220000e-17 99.0
28 TraesCS7B01G094000 chr3B 89.231 65 4 3 2923 2987 701644919 701644980 9.410000e-11 78.7
29 TraesCS7B01G094000 chr5B 97.727 176 4 0 2988 3163 330856074 330855899 1.430000e-78 303.0
30 TraesCS7B01G094000 chr5B 97.159 176 5 0 2988 3163 456466670 456466845 6.630000e-77 298.0
31 TraesCS7B01G094000 chr5B 85.156 128 17 2 5 131 264290487 264290613 2.560000e-26 130.0
32 TraesCS7B01G094000 chr1B 97.159 176 5 0 2988 3163 636910041 636910216 6.630000e-77 298.0
33 TraesCS7B01G094000 chr1B 85.714 91 6 4 273 356 483592032 483592122 4.350000e-14 89.8
34 TraesCS7B01G094000 chr1B 85.714 91 6 4 273 356 684284547 684284457 4.350000e-14 89.8
35 TraesCS7B01G094000 chr2D 83.732 209 27 7 2959 3163 132220952 132221157 1.160000e-44 191.0
36 TraesCS7B01G094000 chr2D 91.525 118 10 0 2822 2939 258428089 258427972 2.520000e-36 163.0
37 TraesCS7B01G094000 chr2D 90.833 120 9 2 2822 2940 525091375 525091257 3.270000e-35 159.0
38 TraesCS7B01G094000 chr2D 90.769 65 4 2 2923 2987 403638347 403638409 5.620000e-13 86.1
39 TraesCS7B01G094000 chr3D 78.595 299 49 8 2319 2613 39031854 39031567 1.940000e-42 183.0
40 TraesCS7B01G094000 chr3D 83.654 104 16 1 22 125 422477171 422477273 2.600000e-16 97.1
41 TraesCS7B01G094000 chr5A 93.220 118 8 0 2822 2939 290278187 290278304 1.170000e-39 174.0
42 TraesCS7B01G094000 chr5A 91.525 118 10 0 2822 2939 240992604 240992487 2.520000e-36 163.0
43 TraesCS7B01G094000 chr6B 92.373 118 9 0 2822 2939 176534331 176534448 5.430000e-38 169.0
44 TraesCS7B01G094000 chr6B 91.453 117 8 2 2824 2939 542057891 542058006 3.270000e-35 159.0
45 TraesCS7B01G094000 chr6B 85.714 91 6 4 273 356 184765279 184765369 4.350000e-14 89.8
46 TraesCS7B01G094000 chr2B 91.525 118 10 0 2822 2939 435775738 435775855 2.520000e-36 163.0
47 TraesCS7B01G094000 chr4D 90.756 119 10 1 2822 2939 277165299 277165181 1.170000e-34 158.0
48 TraesCS7B01G094000 chr4D 90.678 118 11 0 2822 2939 475316176 475316293 1.170000e-34 158.0
49 TraesCS7B01G094000 chr5D 85.156 128 17 2 5 131 239273701 239273575 2.560000e-26 130.0
50 TraesCS7B01G094000 chr5D 87.500 88 10 1 275 361 417047566 417047479 2.010000e-17 100.0
51 TraesCS7B01G094000 chr5D 90.769 65 3 2 2923 2987 30384883 30384822 2.020000e-12 84.2
52 TraesCS7B01G094000 chr6A 88.750 80 6 3 279 356 162806729 162806651 9.340000e-16 95.3
53 TraesCS7B01G094000 chr4A 86.517 89 8 4 276 361 124403067 124403154 9.340000e-16 95.3
54 TraesCS7B01G094000 chr4A 86.885 61 6 2 37 96 207362784 207362725 2.040000e-07 67.6
55 TraesCS7B01G094000 chr6D 94.444 54 3 0 2934 2987 135872472 135872419 2.020000e-12 84.2
56 TraesCS7B01G094000 chr6D 97.917 48 1 0 2934 2981 144312313 144312360 2.020000e-12 84.2
57 TraesCS7B01G094000 chr2A 94.444 54 3 0 2934 2987 582722064 582722011 2.020000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G094000 chr7B 107821036 107824198 3162 False 5842 5842 100.0000 1 3163 1 chr7B.!!$F1 3162
1 TraesCS7B01G094000 chr7B 114938575 114940856 2281 False 1869 1869 81.6150 417 2726 1 chr7B.!!$F2 2309
2 TraesCS7B01G094000 chr7D 143974473 143976774 2301 True 3509 3509 94.1970 1 2303 1 chr7D.!!$R3 2302
3 TraesCS7B01G094000 chr7D 152947009 152949293 2284 False 1964 1964 82.3120 427 2727 1 chr7D.!!$F1 2300
4 TraesCS7B01G094000 chr7D 143949695 143950214 519 True 752 752 92.7620 2299 2820 1 chr7D.!!$R2 521
5 TraesCS7B01G094000 chr7A 146024427 146027225 2798 False 3489 3489 89.2760 1 2792 1 chr7A.!!$F1 2791
6 TraesCS7B01G094000 chr7A 105776609 105778691 2082 True 612 935 80.6625 576 2614 2 chr7A.!!$R3 2038
7 TraesCS7B01G094000 chr7A 736496776 736497440 664 False 337 337 76.1000 832 1508 1 chr7A.!!$F3 676
8 TraesCS7B01G094000 chr7A 105765805 105766402 597 True 294 294 76.3160 1977 2614 1 chr7A.!!$R1 637
9 TraesCS7B01G094000 chrUn 29899570 29901514 1944 True 1565 1565 81.3590 416 2354 1 chrUn.!!$R1 1938
10 TraesCS7B01G094000 chr4B 667837199 667840077 2878 False 827 889 81.1380 691 1867 2 chr4B.!!$F3 1176
11 TraesCS7B01G094000 chr4B 667814972 667815956 984 False 706 706 79.7980 900 1878 1 chr4B.!!$F2 978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 2732 1.0064 CCCATTTCCCAAAGAGCCTCT 59.994 52.381 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2828 4689 0.180642 TGTGGGCGTTGAACTAACCA 59.819 50.0 0.0 0.0 35.84 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 175 4.946445 TGATGCATGTGTCAATTGTTTGT 58.054 34.783 2.46 0.00 34.32 2.83
180 182 6.680810 CATGTGTCAATTGTTTGTAGATGGT 58.319 36.000 5.13 0.00 34.32 3.55
185 187 7.336931 GTGTCAATTGTTTGTAGATGGTAGGAT 59.663 37.037 5.13 0.00 34.32 3.24
221 224 4.777896 TCCACATTAGAGCTTAGGTGTCTT 59.222 41.667 7.94 0.00 0.00 3.01
276 283 5.772393 AGTGGACATTAGGATTACAACCA 57.228 39.130 0.00 0.00 0.00 3.67
389 397 2.093306 ACACCGGTACATGACACATG 57.907 50.000 6.87 9.72 0.00 3.21
403 411 4.647611 TGACACATGGTAAAGTGGGTAAG 58.352 43.478 0.00 0.00 39.99 2.34
515 529 3.270027 TGCATACAGTGGAAGCATACAC 58.730 45.455 0.00 0.00 37.86 2.90
535 549 9.935682 CATACACATGATACATAGAAAACAACC 57.064 33.333 0.00 0.00 33.67 3.77
644 659 5.725362 TGGGAACAAACCAAAAGTGTTTAG 58.275 37.500 0.00 0.00 35.67 1.85
790 816 1.959985 CTAGCTCACGTCCATCCATCT 59.040 52.381 0.00 0.00 0.00 2.90
829 863 4.953940 AATAAGCAAAGCCTGGAAAACA 57.046 36.364 0.00 0.00 0.00 2.83
882 916 7.813148 CCAGTACACGCATTAGCTACTATTTAT 59.187 37.037 0.00 0.00 39.10 1.40
901 935 1.722034 TGCACCTCCCTCTCATATCC 58.278 55.000 0.00 0.00 0.00 2.59
954 2690 2.448194 ACACATATCCATCATTGCCCCT 59.552 45.455 0.00 0.00 0.00 4.79
996 2732 1.006400 CCCATTTCCCAAAGAGCCTCT 59.994 52.381 0.00 0.00 0.00 3.69
1196 2936 6.465035 CCATGGGATCTCCTAAAGAAGGTAAG 60.465 46.154 2.85 0.00 46.62 2.34
1203 2944 3.850173 TCCTAAAGAAGGTAAGCATGGGT 59.150 43.478 0.00 0.00 46.62 4.51
1299 3041 1.077787 CGGCTATTGGAAGGCCACA 60.078 57.895 5.01 0.00 45.94 4.17
1317 3059 3.519510 CCACAGGAAAGGACAAGGAGATA 59.480 47.826 0.00 0.00 0.00 1.98
1629 3379 2.225675 TGTTGGTAGGGGGAGTATGTGA 60.226 50.000 0.00 0.00 0.00 3.58
1645 3395 8.207545 GGAGTATGTGATTTGTAGAATCTTCCT 58.792 37.037 0.00 0.00 0.00 3.36
1654 3404 9.336171 GATTTGTAGAATCTTCCTTAAGAGCAT 57.664 33.333 3.36 0.00 44.79 3.79
1701 3453 4.006780 TCATATGACATGTCCATTCCCG 57.993 45.455 22.85 5.51 0.00 5.14
1791 3543 3.811497 CGACATGTTATCATCACTGGCAT 59.189 43.478 0.00 0.00 31.15 4.40
1794 3546 3.541996 TGTTATCATCACTGGCATCGT 57.458 42.857 0.00 0.00 0.00 3.73
1878 3630 3.730761 GCAGTGCGGTGCTTCCAG 61.731 66.667 0.00 0.00 40.54 3.86
1958 3713 5.580691 GTCATCGATGTCATTCTACAACCAA 59.419 40.000 24.09 0.00 32.02 3.67
1973 3728 1.066257 CCAACACCAGCAACAGCAC 59.934 57.895 0.00 0.00 0.00 4.40
2028 3819 2.444895 GGGTCGATCCTGGGAGCT 60.445 66.667 7.71 0.00 36.25 4.09
2059 3850 4.808042 TCCATAGTGTCTCATGAGGATGA 58.192 43.478 22.42 0.12 37.07 2.92
2065 3856 4.654724 AGTGTCTCATGAGGATGATGTGAT 59.345 41.667 22.42 0.00 34.93 3.06
2220 4014 5.574055 GCATGCATAAAATAATCATCCACCG 59.426 40.000 14.21 0.00 0.00 4.94
2378 4234 0.321210 CTTGTGTATGCACCACCCGA 60.321 55.000 11.66 2.33 44.65 5.14
2423 4279 5.636123 TCCATGTGTTGTAAAATACCTGGT 58.364 37.500 13.92 4.05 34.69 4.00
2432 4288 7.656948 TGTTGTAAAATACCTGGTAGTGTGTAC 59.343 37.037 12.78 12.59 0.00 2.90
2433 4289 7.300556 TGTAAAATACCTGGTAGTGTGTACA 57.699 36.000 12.78 14.65 0.00 2.90
2434 4290 7.380536 TGTAAAATACCTGGTAGTGTGTACAG 58.619 38.462 12.78 0.00 0.00 2.74
2435 4291 6.429521 AAAATACCTGGTAGTGTGTACAGT 57.570 37.500 12.78 0.00 0.00 3.55
2436 4292 7.543359 AAAATACCTGGTAGTGTGTACAGTA 57.457 36.000 12.78 0.00 0.00 2.74
2569 4425 4.696402 ACAAAATTTGGGCATGCACTAATG 59.304 37.500 26.58 19.20 34.12 1.90
2587 4443 6.873076 CACTAATGCAGAGAGATTTCTATCCC 59.127 42.308 5.45 0.00 34.92 3.85
2663 4524 7.697352 TTTTAAGAAACTGAATGTGCATGTG 57.303 32.000 0.00 0.00 0.00 3.21
2679 4540 8.988546 TGTGCATGTGTATTTATACCCTATTT 57.011 30.769 0.00 0.00 32.33 1.40
2709 4570 3.960102 TGATAAATGACAAAGCCATCCCC 59.040 43.478 0.00 0.00 0.00 4.81
2769 4630 2.288395 GGTGGAGTTGCAAGGAAATGTG 60.288 50.000 0.00 0.00 0.00 3.21
2799 4660 8.472413 AGCAATAATTAAAAGAGTGCATCATGT 58.528 29.630 8.95 0.00 32.98 3.21
2801 4662 9.027129 CAATAATTAAAAGAGTGCATCATGTGG 57.973 33.333 0.00 0.00 0.00 4.17
2802 4663 6.839124 AATTAAAAGAGTGCATCATGTGGA 57.161 33.333 0.00 0.00 0.00 4.02
2820 4681 3.883489 GTGGACCAATCCTTAGTTATGCC 59.117 47.826 0.00 0.00 46.43 4.40
2821 4682 3.785887 TGGACCAATCCTTAGTTATGCCT 59.214 43.478 0.00 0.00 46.43 4.75
2822 4683 4.972568 TGGACCAATCCTTAGTTATGCCTA 59.027 41.667 0.00 0.00 46.43 3.93
2823 4684 5.071788 TGGACCAATCCTTAGTTATGCCTAG 59.928 44.000 0.00 0.00 46.43 3.02
2824 4685 5.071923 GGACCAATCCTTAGTTATGCCTAGT 59.928 44.000 0.00 0.00 42.45 2.57
2825 4686 6.269307 GGACCAATCCTTAGTTATGCCTAGTA 59.731 42.308 0.00 0.00 42.45 1.82
2826 4687 7.202066 GGACCAATCCTTAGTTATGCCTAGTAA 60.202 40.741 0.00 0.00 42.45 2.24
2827 4688 8.097791 ACCAATCCTTAGTTATGCCTAGTAAA 57.902 34.615 0.00 0.00 0.00 2.01
2828 4689 8.724310 ACCAATCCTTAGTTATGCCTAGTAAAT 58.276 33.333 0.00 0.00 0.00 1.40
2829 4690 9.003658 CCAATCCTTAGTTATGCCTAGTAAATG 57.996 37.037 0.00 0.00 0.00 2.32
2830 4691 9.003658 CAATCCTTAGTTATGCCTAGTAAATGG 57.996 37.037 0.00 0.00 0.00 3.16
2831 4692 7.685849 TCCTTAGTTATGCCTAGTAAATGGT 57.314 36.000 0.00 0.00 0.00 3.55
2832 4693 8.097791 TCCTTAGTTATGCCTAGTAAATGGTT 57.902 34.615 0.00 0.00 0.00 3.67
2833 4694 9.216148 TCCTTAGTTATGCCTAGTAAATGGTTA 57.784 33.333 0.00 0.00 0.00 2.85
2834 4695 9.490379 CCTTAGTTATGCCTAGTAAATGGTTAG 57.510 37.037 0.00 0.00 0.00 2.34
2837 4698 8.959705 AGTTATGCCTAGTAAATGGTTAGTTC 57.040 34.615 0.00 0.00 0.00 3.01
2838 4699 8.545472 AGTTATGCCTAGTAAATGGTTAGTTCA 58.455 33.333 0.00 0.00 0.00 3.18
2839 4700 9.169592 GTTATGCCTAGTAAATGGTTAGTTCAA 57.830 33.333 0.00 0.00 0.00 2.69
2840 4701 7.625828 ATGCCTAGTAAATGGTTAGTTCAAC 57.374 36.000 0.00 0.00 36.32 3.18
2841 4702 5.640357 TGCCTAGTAAATGGTTAGTTCAACG 59.360 40.000 0.00 0.00 38.09 4.10
2842 4703 5.446875 GCCTAGTAAATGGTTAGTTCAACGC 60.447 44.000 0.00 0.00 38.09 4.84
2843 4704 5.064325 CCTAGTAAATGGTTAGTTCAACGCC 59.936 44.000 0.00 0.00 38.09 5.68
2844 4705 3.754850 AGTAAATGGTTAGTTCAACGCCC 59.245 43.478 0.00 0.00 38.09 6.13
2845 4706 2.279935 AATGGTTAGTTCAACGCCCA 57.720 45.000 0.00 0.00 38.09 5.36
2846 4707 1.530323 ATGGTTAGTTCAACGCCCAC 58.470 50.000 0.00 0.00 38.09 4.61
2847 4708 0.180642 TGGTTAGTTCAACGCCCACA 59.819 50.000 0.00 0.00 38.09 4.17
2848 4709 0.872388 GGTTAGTTCAACGCCCACAG 59.128 55.000 0.00 0.00 38.09 3.66
2849 4710 1.589803 GTTAGTTCAACGCCCACAGT 58.410 50.000 0.00 0.00 0.00 3.55
2850 4711 1.944709 GTTAGTTCAACGCCCACAGTT 59.055 47.619 0.00 0.00 0.00 3.16
2852 4713 1.101049 AGTTCAACGCCCACAGTTGG 61.101 55.000 8.88 0.00 46.36 3.77
2865 4726 3.176708 CACAGTTGGACTAATACGACCG 58.823 50.000 0.00 0.00 0.00 4.79
2866 4727 2.821969 ACAGTTGGACTAATACGACCGT 59.178 45.455 0.00 0.00 0.00 4.83
2867 4728 3.256631 ACAGTTGGACTAATACGACCGTT 59.743 43.478 0.00 0.00 0.00 4.44
2868 4729 4.240096 CAGTTGGACTAATACGACCGTTT 58.760 43.478 0.00 0.00 0.00 3.60
2869 4730 4.090930 CAGTTGGACTAATACGACCGTTTG 59.909 45.833 0.00 0.00 0.00 2.93
2870 4731 2.609350 TGGACTAATACGACCGTTTGC 58.391 47.619 0.00 0.00 0.00 3.68
2871 4732 1.585214 GGACTAATACGACCGTTTGCG 59.415 52.381 0.00 0.00 37.95 4.85
2872 4733 2.518949 GACTAATACGACCGTTTGCGA 58.481 47.619 0.00 0.00 41.33 5.10
2873 4734 3.111098 GACTAATACGACCGTTTGCGAT 58.889 45.455 0.00 0.00 41.33 4.58
2874 4735 4.282068 GACTAATACGACCGTTTGCGATA 58.718 43.478 0.00 0.00 41.33 2.92
2875 4736 4.671377 ACTAATACGACCGTTTGCGATAA 58.329 39.130 0.00 0.00 41.33 1.75
2876 4737 5.284079 ACTAATACGACCGTTTGCGATAAT 58.716 37.500 0.00 0.00 41.33 1.28
2877 4738 6.437928 ACTAATACGACCGTTTGCGATAATA 58.562 36.000 0.00 0.00 41.33 0.98
2878 4739 6.917477 ACTAATACGACCGTTTGCGATAATAA 59.083 34.615 0.00 0.00 41.33 1.40
2879 4740 3.912708 ACGACCGTTTGCGATAATAAC 57.087 42.857 0.00 0.00 41.33 1.89
2880 4741 3.252400 ACGACCGTTTGCGATAATAACA 58.748 40.909 0.00 0.00 41.33 2.41
2881 4742 3.866910 ACGACCGTTTGCGATAATAACAT 59.133 39.130 0.00 0.00 41.33 2.71
2882 4743 4.200827 CGACCGTTTGCGATAATAACATG 58.799 43.478 0.00 0.00 41.33 3.21
2883 4744 4.523813 GACCGTTTGCGATAATAACATGG 58.476 43.478 0.00 0.00 41.33 3.66
2884 4745 3.242936 ACCGTTTGCGATAATAACATGGC 60.243 43.478 0.00 0.00 41.33 4.40
2885 4746 2.964123 CGTTTGCGATAATAACATGGCG 59.036 45.455 0.00 0.00 41.33 5.69
2886 4747 3.296628 GTTTGCGATAATAACATGGCGG 58.703 45.455 0.00 0.00 32.81 6.13
2887 4748 0.871722 TGCGATAATAACATGGCGGC 59.128 50.000 0.00 0.00 32.81 6.53
2888 4749 1.156736 GCGATAATAACATGGCGGCT 58.843 50.000 11.43 0.00 0.00 5.52
2889 4750 2.289133 TGCGATAATAACATGGCGGCTA 60.289 45.455 11.43 0.00 32.81 3.93
2890 4751 2.936498 GCGATAATAACATGGCGGCTAT 59.064 45.455 11.43 0.00 0.00 2.97
2891 4752 3.374058 GCGATAATAACATGGCGGCTATT 59.626 43.478 11.43 8.41 0.00 1.73
2892 4753 4.142687 GCGATAATAACATGGCGGCTATTT 60.143 41.667 11.43 2.58 0.00 1.40
2893 4754 5.323900 CGATAATAACATGGCGGCTATTTG 58.676 41.667 11.43 5.42 0.00 2.32
2894 4755 5.106712 CGATAATAACATGGCGGCTATTTGT 60.107 40.000 11.43 6.09 0.00 2.83
2895 4756 6.567701 CGATAATAACATGGCGGCTATTTGTT 60.568 38.462 11.43 16.01 35.00 2.83
2896 4757 7.360522 CGATAATAACATGGCGGCTATTTGTTA 60.361 37.037 20.39 20.39 37.23 2.41
2897 4758 6.458232 AATAACATGGCGGCTATTTGTTAA 57.542 33.333 21.28 11.64 36.63 2.01
2898 4759 4.792521 AACATGGCGGCTATTTGTTAAA 57.207 36.364 11.43 0.00 0.00 1.52
2899 4760 4.370364 ACATGGCGGCTATTTGTTAAAG 57.630 40.909 11.43 0.00 0.00 1.85
2900 4761 3.761752 ACATGGCGGCTATTTGTTAAAGT 59.238 39.130 11.43 0.00 0.00 2.66
2901 4762 4.219725 ACATGGCGGCTATTTGTTAAAGTT 59.780 37.500 11.43 0.00 0.00 2.66
2902 4763 4.167554 TGGCGGCTATTTGTTAAAGTTG 57.832 40.909 11.43 0.00 0.00 3.16
2903 4764 2.921121 GGCGGCTATTTGTTAAAGTTGC 59.079 45.455 0.00 0.00 0.00 4.17
2904 4765 2.921121 GCGGCTATTTGTTAAAGTTGCC 59.079 45.455 0.00 0.00 39.45 4.52
2905 4766 3.366985 GCGGCTATTTGTTAAAGTTGCCT 60.367 43.478 0.00 0.00 40.25 4.75
2906 4767 4.142556 GCGGCTATTTGTTAAAGTTGCCTA 60.143 41.667 0.00 0.00 40.25 3.93
2907 4768 5.569413 CGGCTATTTGTTAAAGTTGCCTAG 58.431 41.667 0.00 0.00 40.25 3.02
2908 4769 5.448632 CGGCTATTTGTTAAAGTTGCCTAGG 60.449 44.000 3.67 3.67 40.25 3.02
2909 4770 5.650703 GGCTATTTGTTAAAGTTGCCTAGGA 59.349 40.000 14.75 0.00 39.63 2.94
2910 4771 6.152154 GGCTATTTGTTAAAGTTGCCTAGGAA 59.848 38.462 14.75 0.00 39.63 3.36
2911 4772 7.309560 GGCTATTTGTTAAAGTTGCCTAGGAAA 60.310 37.037 14.75 5.16 39.63 3.13
2912 4773 8.085909 GCTATTTGTTAAAGTTGCCTAGGAAAA 58.914 33.333 14.75 2.68 0.00 2.29
2915 4776 7.589958 TTGTTAAAGTTGCCTAGGAAAATCA 57.410 32.000 14.75 0.00 0.00 2.57
2916 4777 7.589958 TGTTAAAGTTGCCTAGGAAAATCAA 57.410 32.000 14.75 3.57 0.00 2.57
2917 4778 8.189119 TGTTAAAGTTGCCTAGGAAAATCAAT 57.811 30.769 14.75 0.38 0.00 2.57
2918 4779 8.646900 TGTTAAAGTTGCCTAGGAAAATCAATT 58.353 29.630 14.75 1.46 0.00 2.32
2919 4780 9.489084 GTTAAAGTTGCCTAGGAAAATCAATTT 57.511 29.630 14.75 6.96 0.00 1.82
2948 4809 9.528018 AAAAAGGTGAAACAAACATATGTGTAG 57.472 29.630 9.63 5.07 39.98 2.74
2949 4810 6.817765 AGGTGAAACAAACATATGTGTAGG 57.182 37.500 9.63 2.15 39.98 3.18
2950 4811 6.539173 AGGTGAAACAAACATATGTGTAGGA 58.461 36.000 9.63 0.00 39.98 2.94
2951 4812 6.430000 AGGTGAAACAAACATATGTGTAGGAC 59.570 38.462 9.63 1.68 39.98 3.85
2952 4813 6.205853 GGTGAAACAAACATATGTGTAGGACA 59.794 38.462 9.63 4.25 39.98 4.02
2953 4814 7.094377 GGTGAAACAAACATATGTGTAGGACAT 60.094 37.037 9.63 0.00 43.69 3.06
2954 4815 8.296713 GTGAAACAAACATATGTGTAGGACATT 58.703 33.333 9.63 0.00 40.82 2.71
2955 4816 8.511321 TGAAACAAACATATGTGTAGGACATTC 58.489 33.333 9.63 7.19 43.20 2.67
2956 4817 7.994425 AACAAACATATGTGTAGGACATTCA 57.006 32.000 9.63 0.00 43.20 2.57
2957 4818 7.994425 ACAAACATATGTGTAGGACATTCAA 57.006 32.000 9.63 0.00 43.20 2.69
2958 4819 8.402798 ACAAACATATGTGTAGGACATTCAAA 57.597 30.769 9.63 0.00 43.20 2.69
2959 4820 8.855110 ACAAACATATGTGTAGGACATTCAAAA 58.145 29.630 9.63 0.00 43.20 2.44
2960 4821 9.859427 CAAACATATGTGTAGGACATTCAAAAT 57.141 29.630 9.63 0.00 43.20 1.82
2962 4823 8.806429 ACATATGTGTAGGACATTCAAAATCA 57.194 30.769 7.78 0.00 43.20 2.57
2963 4824 9.412460 ACATATGTGTAGGACATTCAAAATCAT 57.588 29.630 7.78 0.00 43.20 2.45
2967 4828 8.408043 TGTGTAGGACATTCAAAATCATTTCT 57.592 30.769 0.00 0.00 0.00 2.52
2968 4829 8.514594 TGTGTAGGACATTCAAAATCATTTCTC 58.485 33.333 0.00 0.00 0.00 2.87
2969 4830 8.514594 GTGTAGGACATTCAAAATCATTTCTCA 58.485 33.333 0.00 0.00 0.00 3.27
2970 4831 9.076781 TGTAGGACATTCAAAATCATTTCTCAA 57.923 29.630 0.00 0.00 0.00 3.02
2971 4832 9.565213 GTAGGACATTCAAAATCATTTCTCAAG 57.435 33.333 0.00 0.00 0.00 3.02
2972 4833 8.413309 AGGACATTCAAAATCATTTCTCAAGA 57.587 30.769 0.00 0.00 0.00 3.02
2973 4834 9.032624 AGGACATTCAAAATCATTTCTCAAGAT 57.967 29.630 0.00 0.00 0.00 2.40
2974 4835 9.298774 GGACATTCAAAATCATTTCTCAAGATC 57.701 33.333 0.00 0.00 0.00 2.75
2976 4837 9.856488 ACATTCAAAATCATTTCTCAAGATCTG 57.144 29.630 0.00 0.00 0.00 2.90
2977 4838 9.302345 CATTCAAAATCATTTCTCAAGATCTGG 57.698 33.333 0.00 0.00 0.00 3.86
2978 4839 6.860080 TCAAAATCATTTCTCAAGATCTGGC 58.140 36.000 0.00 0.00 0.00 4.85
2979 4840 6.662234 TCAAAATCATTTCTCAAGATCTGGCT 59.338 34.615 0.00 0.00 0.00 4.75
2980 4841 7.830697 TCAAAATCATTTCTCAAGATCTGGCTA 59.169 33.333 0.00 0.00 0.00 3.93
2981 4842 8.630917 CAAAATCATTTCTCAAGATCTGGCTAT 58.369 33.333 0.00 0.00 0.00 2.97
2982 4843 7.747155 AATCATTTCTCAAGATCTGGCTATG 57.253 36.000 0.00 0.00 0.00 2.23
2983 4844 6.490241 TCATTTCTCAAGATCTGGCTATGA 57.510 37.500 0.00 0.00 0.00 2.15
2984 4845 6.892485 TCATTTCTCAAGATCTGGCTATGAA 58.108 36.000 0.00 0.00 0.00 2.57
2985 4846 7.515586 TCATTTCTCAAGATCTGGCTATGAAT 58.484 34.615 0.00 0.00 0.00 2.57
2986 4847 7.997223 TCATTTCTCAAGATCTGGCTATGAATT 59.003 33.333 0.00 0.00 0.00 2.17
2987 4848 8.630917 CATTTCTCAAGATCTGGCTATGAATTT 58.369 33.333 0.00 0.00 0.00 1.82
2988 4849 7.563888 TTCTCAAGATCTGGCTATGAATTTG 57.436 36.000 0.00 0.00 0.00 2.32
2989 4850 6.656902 TCTCAAGATCTGGCTATGAATTTGT 58.343 36.000 0.00 0.00 0.00 2.83
2990 4851 6.765036 TCTCAAGATCTGGCTATGAATTTGTC 59.235 38.462 0.00 0.00 0.00 3.18
2991 4852 5.525012 TCAAGATCTGGCTATGAATTTGTCG 59.475 40.000 0.00 0.00 0.00 4.35
2992 4853 4.384056 AGATCTGGCTATGAATTTGTCGG 58.616 43.478 0.00 0.00 0.00 4.79
2993 4854 2.917933 TCTGGCTATGAATTTGTCGGG 58.082 47.619 0.00 0.00 0.00 5.14
2994 4855 1.949525 CTGGCTATGAATTTGTCGGGG 59.050 52.381 0.00 0.00 0.00 5.73
2995 4856 1.318576 GGCTATGAATTTGTCGGGGG 58.681 55.000 0.00 0.00 0.00 5.40
2996 4857 1.409661 GGCTATGAATTTGTCGGGGGT 60.410 52.381 0.00 0.00 0.00 4.95
2997 4858 2.375146 GCTATGAATTTGTCGGGGGTT 58.625 47.619 0.00 0.00 0.00 4.11
2998 4859 2.099098 GCTATGAATTTGTCGGGGGTTG 59.901 50.000 0.00 0.00 0.00 3.77
2999 4860 1.555967 ATGAATTTGTCGGGGGTTGG 58.444 50.000 0.00 0.00 0.00 3.77
3000 4861 0.478942 TGAATTTGTCGGGGGTTGGA 59.521 50.000 0.00 0.00 0.00 3.53
3001 4862 1.076350 TGAATTTGTCGGGGGTTGGAT 59.924 47.619 0.00 0.00 0.00 3.41
3002 4863 1.476488 GAATTTGTCGGGGGTTGGATG 59.524 52.381 0.00 0.00 0.00 3.51
3003 4864 0.407918 ATTTGTCGGGGGTTGGATGT 59.592 50.000 0.00 0.00 0.00 3.06
3004 4865 0.538516 TTTGTCGGGGGTTGGATGTG 60.539 55.000 0.00 0.00 0.00 3.21
3005 4866 1.419720 TTGTCGGGGGTTGGATGTGA 61.420 55.000 0.00 0.00 0.00 3.58
3006 4867 1.376812 GTCGGGGGTTGGATGTGAC 60.377 63.158 0.00 0.00 0.00 3.67
3007 4868 1.843832 TCGGGGGTTGGATGTGACA 60.844 57.895 0.00 0.00 0.00 3.58
3008 4869 1.204786 TCGGGGGTTGGATGTGACAT 61.205 55.000 0.00 0.00 0.00 3.06
3009 4870 0.544223 CGGGGGTTGGATGTGACATA 59.456 55.000 0.00 0.00 0.00 2.29
3010 4871 1.142870 CGGGGGTTGGATGTGACATAT 59.857 52.381 0.00 0.00 0.00 1.78
3011 4872 2.586425 GGGGGTTGGATGTGACATATG 58.414 52.381 0.00 0.00 0.00 1.78
3012 4873 1.956477 GGGGTTGGATGTGACATATGC 59.044 52.381 1.58 0.00 0.00 3.14
3013 4874 1.956477 GGGTTGGATGTGACATATGCC 59.044 52.381 1.58 0.00 0.00 4.40
3014 4875 2.653726 GGTTGGATGTGACATATGCCA 58.346 47.619 1.58 0.00 0.00 4.92
3015 4876 3.023119 GGTTGGATGTGACATATGCCAA 58.977 45.455 11.77 11.77 33.38 4.52
3016 4877 3.446873 GGTTGGATGTGACATATGCCAAA 59.553 43.478 15.99 0.00 37.17 3.28
3017 4878 4.440525 GGTTGGATGTGACATATGCCAAAG 60.441 45.833 15.99 0.00 37.17 2.77
3018 4879 3.289836 TGGATGTGACATATGCCAAAGG 58.710 45.455 1.58 0.00 0.00 3.11
3019 4880 3.053768 TGGATGTGACATATGCCAAAGGA 60.054 43.478 1.58 0.00 0.00 3.36
3020 4881 4.147321 GGATGTGACATATGCCAAAGGAT 58.853 43.478 1.58 0.00 0.00 3.24
3021 4882 4.022589 GGATGTGACATATGCCAAAGGATG 60.023 45.833 1.58 0.00 0.00 3.51
3033 4894 3.569491 CCAAAGGATGGCTTATCATGGT 58.431 45.455 0.00 0.00 43.80 3.55
3034 4895 3.319972 CCAAAGGATGGCTTATCATGGTG 59.680 47.826 0.00 0.76 43.80 4.17
3035 4896 2.965671 AGGATGGCTTATCATGGTGG 57.034 50.000 0.00 0.00 37.54 4.61
3036 4897 1.426598 AGGATGGCTTATCATGGTGGG 59.573 52.381 0.00 0.00 37.54 4.61
3037 4898 1.548582 GGATGGCTTATCATGGTGGGG 60.549 57.143 0.00 0.00 37.54 4.96
3038 4899 0.484212 ATGGCTTATCATGGTGGGGG 59.516 55.000 0.00 0.00 0.00 5.40
3039 4900 1.531602 GGCTTATCATGGTGGGGGC 60.532 63.158 0.00 0.00 0.00 5.80
3040 4901 1.898574 GCTTATCATGGTGGGGGCG 60.899 63.158 0.00 0.00 0.00 6.13
3041 4902 1.836391 CTTATCATGGTGGGGGCGA 59.164 57.895 0.00 0.00 0.00 5.54
3042 4903 0.250467 CTTATCATGGTGGGGGCGAG 60.250 60.000 0.00 0.00 0.00 5.03
3043 4904 0.986019 TTATCATGGTGGGGGCGAGT 60.986 55.000 0.00 0.00 0.00 4.18
3044 4905 0.105401 TATCATGGTGGGGGCGAGTA 60.105 55.000 0.00 0.00 0.00 2.59
3045 4906 1.410850 ATCATGGTGGGGGCGAGTAG 61.411 60.000 0.00 0.00 0.00 2.57
3046 4907 2.063979 CATGGTGGGGGCGAGTAGA 61.064 63.158 0.00 0.00 0.00 2.59
3047 4908 1.306654 ATGGTGGGGGCGAGTAGAA 60.307 57.895 0.00 0.00 0.00 2.10
3048 4909 1.623542 ATGGTGGGGGCGAGTAGAAC 61.624 60.000 0.00 0.00 0.00 3.01
3049 4910 2.183555 GTGGGGGCGAGTAGAACG 59.816 66.667 0.00 0.00 0.00 3.95
3050 4911 2.283388 TGGGGGCGAGTAGAACGT 60.283 61.111 0.00 0.00 0.00 3.99
3051 4912 2.345760 TGGGGGCGAGTAGAACGTC 61.346 63.158 0.00 0.00 34.52 4.34
3052 4913 2.101770 GGGGCGAGTAGAACGTCG 59.898 66.667 0.00 0.00 39.25 5.12
3056 4917 4.361827 CGAGTAGAACGTCGCTGG 57.638 61.111 0.00 0.00 0.00 4.85
3057 4918 1.500844 CGAGTAGAACGTCGCTGGT 59.499 57.895 0.00 0.00 0.00 4.00
3058 4919 0.793478 CGAGTAGAACGTCGCTGGTG 60.793 60.000 0.00 0.00 0.00 4.17
3059 4920 1.071567 GAGTAGAACGTCGCTGGTGC 61.072 60.000 0.00 0.00 0.00 5.01
3060 4921 2.092882 GTAGAACGTCGCTGGTGCC 61.093 63.158 0.00 0.00 35.36 5.01
3061 4922 2.273179 TAGAACGTCGCTGGTGCCT 61.273 57.895 0.00 0.00 35.36 4.75
3062 4923 2.486636 TAGAACGTCGCTGGTGCCTG 62.487 60.000 0.00 0.00 35.36 4.85
3063 4924 4.988598 AACGTCGCTGGTGCCTGG 62.989 66.667 0.00 0.00 35.36 4.45
3065 4926 4.680237 CGTCGCTGGTGCCTGGAA 62.680 66.667 0.00 0.00 35.36 3.53
3066 4927 2.281484 GTCGCTGGTGCCTGGAAA 60.281 61.111 0.00 0.00 35.36 3.13
3067 4928 2.281484 TCGCTGGTGCCTGGAAAC 60.281 61.111 0.00 0.00 35.36 2.78
3068 4929 3.726517 CGCTGGTGCCTGGAAACG 61.727 66.667 0.00 0.00 35.36 3.60
3069 4930 3.365265 GCTGGTGCCTGGAAACGG 61.365 66.667 0.00 0.00 0.00 4.44
3077 4938 4.225497 CTGGAAACGGGATGAGGC 57.775 61.111 0.00 0.00 0.00 4.70
3078 4939 1.815421 CTGGAAACGGGATGAGGCG 60.815 63.158 0.00 0.00 0.00 5.52
3079 4940 2.238847 CTGGAAACGGGATGAGGCGA 62.239 60.000 0.00 0.00 0.00 5.54
3080 4941 1.078708 GGAAACGGGATGAGGCGAA 60.079 57.895 0.00 0.00 0.00 4.70
3081 4942 1.090052 GGAAACGGGATGAGGCGAAG 61.090 60.000 0.00 0.00 0.00 3.79
3082 4943 1.078426 AAACGGGATGAGGCGAAGG 60.078 57.895 0.00 0.00 0.00 3.46
3106 4967 2.965462 CGCCGGCGAATCTTACCC 60.965 66.667 44.86 0.00 42.83 3.69
3107 4968 2.188469 GCCGGCGAATCTTACCCA 59.812 61.111 12.58 0.00 0.00 4.51
3108 4969 1.887707 GCCGGCGAATCTTACCCAG 60.888 63.158 12.58 0.00 0.00 4.45
3109 4970 1.887707 CCGGCGAATCTTACCCAGC 60.888 63.158 9.30 0.00 0.00 4.85
3110 4971 1.144057 CGGCGAATCTTACCCAGCT 59.856 57.895 0.00 0.00 0.00 4.24
3111 4972 0.462047 CGGCGAATCTTACCCAGCTT 60.462 55.000 0.00 0.00 0.00 3.74
3112 4973 1.300481 GGCGAATCTTACCCAGCTTC 58.700 55.000 0.00 0.00 0.00 3.86
3113 4974 1.406887 GGCGAATCTTACCCAGCTTCA 60.407 52.381 0.00 0.00 29.31 3.02
3114 4975 1.936547 GCGAATCTTACCCAGCTTCAG 59.063 52.381 0.00 0.00 29.31 3.02
3115 4976 2.555199 CGAATCTTACCCAGCTTCAGG 58.445 52.381 0.00 0.00 29.31 3.86
3121 4982 2.588989 CCCAGCTTCAGGGCTCTC 59.411 66.667 0.00 0.00 41.00 3.20
3122 4983 1.994507 CCCAGCTTCAGGGCTCTCT 60.995 63.158 0.00 0.00 41.00 3.10
3123 4984 1.221293 CCAGCTTCAGGGCTCTCTG 59.779 63.158 0.00 0.00 41.00 3.35
3124 4985 1.551908 CCAGCTTCAGGGCTCTCTGT 61.552 60.000 0.00 0.00 41.00 3.41
3125 4986 0.391395 CAGCTTCAGGGCTCTCTGTG 60.391 60.000 0.00 0.00 41.00 3.66
3126 4987 1.078567 GCTTCAGGGCTCTCTGTGG 60.079 63.158 0.00 0.00 36.25 4.17
3127 4988 1.548357 GCTTCAGGGCTCTCTGTGGA 61.548 60.000 0.00 0.00 36.25 4.02
3128 4989 0.536260 CTTCAGGGCTCTCTGTGGAG 59.464 60.000 0.00 0.00 40.73 3.86
3129 4990 0.115152 TTCAGGGCTCTCTGTGGAGA 59.885 55.000 0.00 0.00 45.30 3.71
3130 4991 0.337773 TCAGGGCTCTCTGTGGAGAT 59.662 55.000 0.00 0.00 46.14 2.75
3131 4992 1.570979 TCAGGGCTCTCTGTGGAGATA 59.429 52.381 0.00 0.00 46.14 1.98
3132 4993 2.023984 TCAGGGCTCTCTGTGGAGATAA 60.024 50.000 0.00 0.00 46.14 1.75
3133 4994 2.102252 CAGGGCTCTCTGTGGAGATAAC 59.898 54.545 0.00 0.00 46.14 1.89
3134 4995 2.111384 GGGCTCTCTGTGGAGATAACA 58.889 52.381 0.00 0.00 46.14 2.41
3135 4996 2.159028 GGGCTCTCTGTGGAGATAACAC 60.159 54.545 0.00 0.00 46.14 3.32
3136 4997 2.159028 GGCTCTCTGTGGAGATAACACC 60.159 54.545 0.00 0.00 46.14 4.16
3137 4998 2.159028 GCTCTCTGTGGAGATAACACCC 60.159 54.545 0.00 0.00 46.14 4.61
3138 4999 2.432510 CTCTCTGTGGAGATAACACCCC 59.567 54.545 0.00 0.00 46.14 4.95
3139 5000 2.044492 TCTCTGTGGAGATAACACCCCT 59.956 50.000 0.00 0.00 42.95 4.79
3140 5001 3.271225 TCTCTGTGGAGATAACACCCCTA 59.729 47.826 0.00 0.00 42.95 3.53
3141 5002 3.371965 TCTGTGGAGATAACACCCCTAC 58.628 50.000 0.00 0.00 38.05 3.18
3142 5003 3.012502 TCTGTGGAGATAACACCCCTACT 59.987 47.826 0.00 0.00 38.05 2.57
3143 5004 3.104512 TGTGGAGATAACACCCCTACTG 58.895 50.000 0.00 0.00 38.05 2.74
3144 5005 2.116238 TGGAGATAACACCCCTACTGC 58.884 52.381 0.00 0.00 0.00 4.40
3145 5006 2.292918 TGGAGATAACACCCCTACTGCT 60.293 50.000 0.00 0.00 0.00 4.24
3146 5007 2.103263 GGAGATAACACCCCTACTGCTG 59.897 54.545 0.00 0.00 0.00 4.41
3147 5008 1.486726 AGATAACACCCCTACTGCTGC 59.513 52.381 0.00 0.00 0.00 5.25
3148 5009 1.486726 GATAACACCCCTACTGCTGCT 59.513 52.381 0.00 0.00 0.00 4.24
3149 5010 0.902531 TAACACCCCTACTGCTGCTC 59.097 55.000 0.00 0.00 0.00 4.26
3150 5011 0.838122 AACACCCCTACTGCTGCTCT 60.838 55.000 0.00 0.00 0.00 4.09
3151 5012 1.220206 CACCCCTACTGCTGCTCTG 59.780 63.158 0.00 0.00 0.00 3.35
3152 5013 2.188994 CCCCTACTGCTGCTCTGC 59.811 66.667 0.00 0.00 0.00 4.26
3153 5014 2.202851 CCCTACTGCTGCTCTGCG 60.203 66.667 0.00 0.00 35.36 5.18
3154 5015 2.202851 CCTACTGCTGCTCTGCGG 60.203 66.667 0.00 6.10 44.34 5.69
3155 5016 2.202851 CTACTGCTGCTCTGCGGG 60.203 66.667 11.37 2.42 43.17 6.13
3156 5017 3.729965 CTACTGCTGCTCTGCGGGG 62.730 68.421 11.37 0.00 43.17 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 121 9.057089 CATCAACAAAGATAAATACTACCTCCC 57.943 37.037 0.00 0.00 0.00 4.30
173 175 9.303116 GAGAAAACTCTCATATCCTACCATCTA 57.697 37.037 0.00 0.00 36.78 1.98
180 182 7.921041 ATGTGGAGAAAACTCTCATATCCTA 57.079 36.000 4.64 0.00 38.44 2.94
185 187 7.124901 AGCTCTAATGTGGAGAAAACTCTCATA 59.875 37.037 4.64 0.00 38.44 2.15
206 209 1.002544 GTGCCAAGACACCTAAGCTCT 59.997 52.381 0.00 0.00 34.35 4.09
213 216 1.069765 CACTCGTGCCAAGACACCT 59.930 57.895 0.00 0.00 37.25 4.00
389 397 5.156608 TGCTTAGACTTACCCACTTTACC 57.843 43.478 0.00 0.00 0.00 2.85
403 411 8.962679 ACTATATATAGCCTCAGTTGCTTAGAC 58.037 37.037 18.00 0.00 40.23 2.59
445 453 7.176865 TGAATTCGGTTGGTTTACATATTCCAA 59.823 33.333 0.04 0.00 37.57 3.53
644 659 1.022451 CAAGCCATGCCATGCCAAAC 61.022 55.000 0.00 0.00 0.00 2.93
779 805 1.415659 ACTAGCAGCAGATGGATGGAC 59.584 52.381 0.00 0.00 32.19 4.02
790 816 6.429692 TGCTTATTTTGTTCTTACTAGCAGCA 59.570 34.615 0.00 0.00 32.83 4.41
829 863 2.754664 CTTGCGGGAGAAGCCTTGGT 62.755 60.000 0.00 0.00 36.66 3.67
882 916 1.722034 GGATATGAGAGGGAGGTGCA 58.278 55.000 0.00 0.00 0.00 4.57
954 2690 4.020543 GTGCTGGGGTGGAACAAATATTA 58.979 43.478 0.00 0.00 44.16 0.98
1196 2936 1.898574 CGCCCCTTATCACCCATGC 60.899 63.158 0.00 0.00 0.00 4.06
1203 2944 4.223953 AGAAGAAGTATCGCCCCTTATCA 58.776 43.478 0.00 0.00 0.00 2.15
1299 3041 4.034410 GGACTATCTCCTTGTCCTTTCCT 58.966 47.826 0.00 0.00 43.85 3.36
1317 3059 2.203938 ATGGTCGGTGGGTGGACT 60.204 61.111 0.00 0.00 33.70 3.85
1605 3355 2.419457 TACTCCCCCTACCAACACAA 57.581 50.000 0.00 0.00 0.00 3.33
1607 3357 2.093128 CACATACTCCCCCTACCAACAC 60.093 54.545 0.00 0.00 0.00 3.32
1629 3379 9.692325 AATGCTCTTAAGGAAGATTCTACAAAT 57.308 29.630 1.85 0.00 40.95 2.32
1645 3395 5.221925 ACCTTCTTCAGTCCAATGCTCTTAA 60.222 40.000 0.00 0.00 0.00 1.85
1654 3404 4.582869 CATCATCACCTTCTTCAGTCCAA 58.417 43.478 0.00 0.00 0.00 3.53
1791 3543 1.974875 TAGGCAACAGAGGCGACGA 60.975 57.895 0.00 0.00 39.37 4.20
1794 3546 2.054458 TTGTAGGCAACAGAGGCGA 58.946 52.632 0.00 0.00 39.87 5.54
1878 3630 4.023193 CCCAAAGTAGTGGTTGTTCATCAC 60.023 45.833 0.00 0.00 36.90 3.06
1932 3687 6.096282 TGGTTGTAGAATGACATCGATGACTA 59.904 38.462 31.33 19.70 0.00 2.59
1958 3713 0.466007 TCATGTGCTGTTGCTGGTGT 60.466 50.000 0.00 0.00 40.48 4.16
1973 3728 4.343239 TGGTCTACACTCATCTCCATCATG 59.657 45.833 0.00 0.00 0.00 3.07
2028 3819 7.567458 TCATGAGACACTATGGATGATGAAAA 58.433 34.615 0.00 0.00 0.00 2.29
2059 3850 3.144657 TGTTGCTCAACCAGATCACAT 57.855 42.857 9.92 0.00 40.46 3.21
2220 4014 9.950496 ATGTTGGTATATATCAACTGATCTTCC 57.050 33.333 29.87 9.43 45.24 3.46
2378 4234 4.682778 AATGTAGCCACATATACACCGT 57.317 40.909 0.00 0.00 44.83 4.83
2388 4244 3.153369 ACACATGGAAATGTAGCCACA 57.847 42.857 0.00 0.00 36.92 4.17
2423 4279 5.652994 TGCATGATGTACTGTACACACTA 57.347 39.130 21.84 9.63 42.23 2.74
2432 4288 7.315142 AGGTTAAAAACATGCATGATGTACTG 58.685 34.615 32.75 5.86 45.12 2.74
2433 4289 7.466746 AGGTTAAAAACATGCATGATGTACT 57.533 32.000 32.75 15.68 45.12 2.73
2434 4290 9.236691 CATAGGTTAAAAACATGCATGATGTAC 57.763 33.333 32.75 19.42 45.12 2.90
2435 4291 8.965819 ACATAGGTTAAAAACATGCATGATGTA 58.034 29.630 32.75 16.65 45.12 2.29
2488 4344 8.292448 CCACAATAACACATCTAGGCAAATATC 58.708 37.037 0.00 0.00 0.00 1.63
2569 4425 3.694043 GGGGGATAGAAATCTCTCTGC 57.306 52.381 0.00 0.00 29.41 4.26
2587 4443 4.717280 AGTGGAAGTAAGAGTTCATAGGGG 59.283 45.833 0.00 0.00 29.20 4.79
2679 4540 7.044181 TGGCTTTGTCATTTATCAACAAAACA 58.956 30.769 0.00 0.00 41.04 2.83
2801 4662 6.176014 ACTAGGCATAACTAAGGATTGGTC 57.824 41.667 0.00 0.00 39.61 4.02
2802 4663 7.685849 TTACTAGGCATAACTAAGGATTGGT 57.314 36.000 0.00 0.00 43.71 3.67
2820 4681 5.064325 GGGCGTTGAACTAACCATTTACTAG 59.936 44.000 0.00 0.00 35.84 2.57
2821 4682 4.937015 GGGCGTTGAACTAACCATTTACTA 59.063 41.667 0.00 0.00 35.84 1.82
2822 4683 3.754850 GGGCGTTGAACTAACCATTTACT 59.245 43.478 0.00 0.00 35.84 2.24
2823 4684 3.502979 TGGGCGTTGAACTAACCATTTAC 59.497 43.478 0.00 0.00 35.84 2.01
2824 4685 3.502979 GTGGGCGTTGAACTAACCATTTA 59.497 43.478 5.94 0.00 35.84 1.40
2825 4686 2.295070 GTGGGCGTTGAACTAACCATTT 59.705 45.455 5.94 0.00 35.84 2.32
2826 4687 1.883926 GTGGGCGTTGAACTAACCATT 59.116 47.619 5.94 0.00 35.84 3.16
2827 4688 1.202830 TGTGGGCGTTGAACTAACCAT 60.203 47.619 5.94 0.00 35.84 3.55
2828 4689 0.180642 TGTGGGCGTTGAACTAACCA 59.819 50.000 0.00 0.00 35.84 3.67
2829 4690 0.872388 CTGTGGGCGTTGAACTAACC 59.128 55.000 0.00 0.00 35.84 2.85
2830 4691 1.589803 ACTGTGGGCGTTGAACTAAC 58.410 50.000 0.00 0.00 35.90 2.34
2831 4692 1.944024 CAACTGTGGGCGTTGAACTAA 59.056 47.619 0.00 0.00 43.28 2.24
2832 4693 1.588674 CAACTGTGGGCGTTGAACTA 58.411 50.000 0.00 0.00 43.28 2.24
2833 4694 1.101049 CCAACTGTGGGCGTTGAACT 61.101 55.000 4.61 0.00 43.28 3.01
2834 4695 1.098712 TCCAACTGTGGGCGTTGAAC 61.099 55.000 0.00 0.00 46.01 3.18
2835 4696 1.098712 GTCCAACTGTGGGCGTTGAA 61.099 55.000 0.00 0.00 46.01 2.69
2836 4697 1.525077 GTCCAACTGTGGGCGTTGA 60.525 57.895 0.00 0.00 46.01 3.18
2837 4698 3.030652 GTCCAACTGTGGGCGTTG 58.969 61.111 0.00 0.00 46.01 4.10
2842 4703 3.518590 GTCGTATTAGTCCAACTGTGGG 58.481 50.000 0.00 0.00 46.01 4.61
2844 4705 3.176708 CGGTCGTATTAGTCCAACTGTG 58.823 50.000 0.00 0.00 0.00 3.66
2845 4706 2.821969 ACGGTCGTATTAGTCCAACTGT 59.178 45.455 0.00 0.00 0.00 3.55
2846 4707 3.498927 ACGGTCGTATTAGTCCAACTG 57.501 47.619 0.00 0.00 0.00 3.16
2847 4708 4.240096 CAAACGGTCGTATTAGTCCAACT 58.760 43.478 0.00 0.00 0.00 3.16
2848 4709 3.181527 GCAAACGGTCGTATTAGTCCAAC 60.182 47.826 0.00 0.00 0.00 3.77
2849 4710 2.995258 GCAAACGGTCGTATTAGTCCAA 59.005 45.455 0.00 0.00 0.00 3.53
2850 4711 2.609350 GCAAACGGTCGTATTAGTCCA 58.391 47.619 0.00 0.00 0.00 4.02
2851 4712 1.585214 CGCAAACGGTCGTATTAGTCC 59.415 52.381 0.00 0.00 34.97 3.85
2852 4713 2.518949 TCGCAAACGGTCGTATTAGTC 58.481 47.619 0.00 0.00 40.63 2.59
2853 4714 2.634982 TCGCAAACGGTCGTATTAGT 57.365 45.000 0.00 0.00 40.63 2.24
2854 4715 5.817616 ATTATCGCAAACGGTCGTATTAG 57.182 39.130 0.00 0.00 40.63 1.73
2855 4716 6.694844 TGTTATTATCGCAAACGGTCGTATTA 59.305 34.615 0.00 0.00 40.63 0.98
2856 4717 5.519566 TGTTATTATCGCAAACGGTCGTATT 59.480 36.000 0.00 0.00 40.63 1.89
2857 4718 5.042593 TGTTATTATCGCAAACGGTCGTAT 58.957 37.500 0.00 0.00 40.63 3.06
2858 4719 4.419280 TGTTATTATCGCAAACGGTCGTA 58.581 39.130 0.00 0.00 40.63 3.43
2859 4720 3.252400 TGTTATTATCGCAAACGGTCGT 58.748 40.909 0.00 0.00 40.63 4.34
2860 4721 3.910862 TGTTATTATCGCAAACGGTCG 57.089 42.857 0.00 0.00 40.63 4.79
2861 4722 4.523813 CCATGTTATTATCGCAAACGGTC 58.476 43.478 0.00 0.00 40.63 4.79
2862 4723 3.242936 GCCATGTTATTATCGCAAACGGT 60.243 43.478 0.00 0.00 40.63 4.83
2863 4724 3.296628 GCCATGTTATTATCGCAAACGG 58.703 45.455 0.00 0.00 40.63 4.44
2864 4725 2.964123 CGCCATGTTATTATCGCAAACG 59.036 45.455 0.00 0.00 42.01 3.60
2865 4726 3.296628 CCGCCATGTTATTATCGCAAAC 58.703 45.455 0.00 0.00 0.00 2.93
2866 4727 2.287308 GCCGCCATGTTATTATCGCAAA 60.287 45.455 0.00 0.00 0.00 3.68
2867 4728 1.265635 GCCGCCATGTTATTATCGCAA 59.734 47.619 0.00 0.00 0.00 4.85
2868 4729 0.871722 GCCGCCATGTTATTATCGCA 59.128 50.000 0.00 0.00 0.00 5.10
2869 4730 1.156736 AGCCGCCATGTTATTATCGC 58.843 50.000 0.00 0.00 0.00 4.58
2870 4731 5.106712 ACAAATAGCCGCCATGTTATTATCG 60.107 40.000 0.00 0.00 0.00 2.92
2871 4732 6.254281 ACAAATAGCCGCCATGTTATTATC 57.746 37.500 0.00 0.00 0.00 1.75
2872 4733 6.648879 AACAAATAGCCGCCATGTTATTAT 57.351 33.333 0.00 0.00 32.81 1.28
2873 4734 7.569639 TTAACAAATAGCCGCCATGTTATTA 57.430 32.000 8.04 0.00 36.63 0.98
2874 4735 6.458232 TTAACAAATAGCCGCCATGTTATT 57.542 33.333 8.04 0.00 36.63 1.40
2875 4736 6.096282 ACTTTAACAAATAGCCGCCATGTTAT 59.904 34.615 8.04 0.00 36.63 1.89
2876 4737 5.416326 ACTTTAACAAATAGCCGCCATGTTA 59.584 36.000 0.00 0.00 35.89 2.41
2877 4738 4.219725 ACTTTAACAAATAGCCGCCATGTT 59.780 37.500 0.00 0.00 37.86 2.71
2878 4739 3.761752 ACTTTAACAAATAGCCGCCATGT 59.238 39.130 0.00 0.00 0.00 3.21
2879 4740 4.370364 ACTTTAACAAATAGCCGCCATG 57.630 40.909 0.00 0.00 0.00 3.66
2880 4741 4.743493 CAACTTTAACAAATAGCCGCCAT 58.257 39.130 0.00 0.00 0.00 4.40
2881 4742 3.612955 GCAACTTTAACAAATAGCCGCCA 60.613 43.478 0.00 0.00 0.00 5.69
2882 4743 2.921121 GCAACTTTAACAAATAGCCGCC 59.079 45.455 0.00 0.00 0.00 6.13
2883 4744 2.921121 GGCAACTTTAACAAATAGCCGC 59.079 45.455 0.00 0.00 0.00 6.53
2922 4783 9.528018 CTACACATATGTTTGTTTCACCTTTTT 57.472 29.630 5.37 0.00 40.48 1.94
2923 4784 8.141268 CCTACACATATGTTTGTTTCACCTTTT 58.859 33.333 5.37 0.00 40.48 2.27
2924 4785 7.504238 TCCTACACATATGTTTGTTTCACCTTT 59.496 33.333 5.37 0.00 40.48 3.11
2925 4786 7.001674 TCCTACACATATGTTTGTTTCACCTT 58.998 34.615 5.37 0.00 40.48 3.50
2926 4787 6.430000 GTCCTACACATATGTTTGTTTCACCT 59.570 38.462 5.37 0.00 40.48 4.00
2927 4788 6.205853 TGTCCTACACATATGTTTGTTTCACC 59.794 38.462 5.37 0.00 40.48 4.02
2928 4789 7.197071 TGTCCTACACATATGTTTGTTTCAC 57.803 36.000 5.37 1.08 40.48 3.18
2929 4790 7.994425 ATGTCCTACACATATGTTTGTTTCA 57.006 32.000 5.37 3.10 44.56 2.69
2930 4791 8.511321 TGAATGTCCTACACATATGTTTGTTTC 58.489 33.333 5.37 3.11 45.77 2.78
2931 4792 8.402798 TGAATGTCCTACACATATGTTTGTTT 57.597 30.769 5.37 0.00 45.77 2.83
2932 4793 7.994425 TGAATGTCCTACACATATGTTTGTT 57.006 32.000 5.37 0.00 45.77 2.83
2933 4794 7.994425 TTGAATGTCCTACACATATGTTTGT 57.006 32.000 5.37 4.89 45.77 2.83
2934 4795 9.859427 ATTTTGAATGTCCTACACATATGTTTG 57.141 29.630 5.37 0.00 45.77 2.93
2936 4797 9.241919 TGATTTTGAATGTCCTACACATATGTT 57.758 29.630 5.37 0.84 45.77 2.71
2937 4798 8.806429 TGATTTTGAATGTCCTACACATATGT 57.194 30.769 1.41 1.41 45.77 2.29
2942 4803 8.408043 AGAAATGATTTTGAATGTCCTACACA 57.592 30.769 0.00 0.00 40.18 3.72
2943 4804 8.514594 TGAGAAATGATTTTGAATGTCCTACAC 58.485 33.333 0.00 0.00 0.00 2.90
2944 4805 8.634335 TGAGAAATGATTTTGAATGTCCTACA 57.366 30.769 0.00 0.00 0.00 2.74
2945 4806 9.565213 CTTGAGAAATGATTTTGAATGTCCTAC 57.435 33.333 0.00 0.00 0.00 3.18
2946 4807 9.519191 TCTTGAGAAATGATTTTGAATGTCCTA 57.481 29.630 0.00 0.00 0.00 2.94
2947 4808 8.413309 TCTTGAGAAATGATTTTGAATGTCCT 57.587 30.769 0.00 0.00 0.00 3.85
2948 4809 9.298774 GATCTTGAGAAATGATTTTGAATGTCC 57.701 33.333 0.00 0.00 0.00 4.02
2950 4811 9.856488 CAGATCTTGAGAAATGATTTTGAATGT 57.144 29.630 0.00 0.00 0.00 2.71
2951 4812 9.302345 CCAGATCTTGAGAAATGATTTTGAATG 57.698 33.333 0.00 0.00 0.00 2.67
2952 4813 7.980099 GCCAGATCTTGAGAAATGATTTTGAAT 59.020 33.333 0.00 0.00 0.00 2.57
2953 4814 7.177921 AGCCAGATCTTGAGAAATGATTTTGAA 59.822 33.333 0.00 0.00 0.00 2.69
2954 4815 6.662234 AGCCAGATCTTGAGAAATGATTTTGA 59.338 34.615 0.00 0.00 0.00 2.69
2955 4816 6.864342 AGCCAGATCTTGAGAAATGATTTTG 58.136 36.000 0.00 0.00 0.00 2.44
2956 4817 8.630917 CATAGCCAGATCTTGAGAAATGATTTT 58.369 33.333 0.00 0.00 0.00 1.82
2957 4818 7.997223 TCATAGCCAGATCTTGAGAAATGATTT 59.003 33.333 0.00 0.00 0.00 2.17
2958 4819 7.515586 TCATAGCCAGATCTTGAGAAATGATT 58.484 34.615 0.00 0.00 0.00 2.57
2959 4820 7.075851 TCATAGCCAGATCTTGAGAAATGAT 57.924 36.000 0.00 0.00 0.00 2.45
2960 4821 6.490241 TCATAGCCAGATCTTGAGAAATGA 57.510 37.500 0.00 0.00 0.00 2.57
2961 4822 7.747155 ATTCATAGCCAGATCTTGAGAAATG 57.253 36.000 0.00 0.00 0.00 2.32
2962 4823 8.630917 CAAATTCATAGCCAGATCTTGAGAAAT 58.369 33.333 0.00 0.00 0.00 2.17
2963 4824 7.613022 ACAAATTCATAGCCAGATCTTGAGAAA 59.387 33.333 0.00 0.00 0.00 2.52
2964 4825 7.114754 ACAAATTCATAGCCAGATCTTGAGAA 58.885 34.615 0.00 0.00 0.00 2.87
2965 4826 6.656902 ACAAATTCATAGCCAGATCTTGAGA 58.343 36.000 0.00 0.00 0.00 3.27
2966 4827 6.292757 CGACAAATTCATAGCCAGATCTTGAG 60.293 42.308 0.00 0.00 0.00 3.02
2967 4828 5.525012 CGACAAATTCATAGCCAGATCTTGA 59.475 40.000 0.00 0.00 0.00 3.02
2968 4829 5.277683 CCGACAAATTCATAGCCAGATCTTG 60.278 44.000 0.00 0.00 0.00 3.02
2969 4830 4.818546 CCGACAAATTCATAGCCAGATCTT 59.181 41.667 0.00 0.00 0.00 2.40
2970 4831 4.384056 CCGACAAATTCATAGCCAGATCT 58.616 43.478 0.00 0.00 0.00 2.75
2971 4832 3.499918 CCCGACAAATTCATAGCCAGATC 59.500 47.826 0.00 0.00 0.00 2.75
2972 4833 3.480470 CCCGACAAATTCATAGCCAGAT 58.520 45.455 0.00 0.00 0.00 2.90
2973 4834 2.421388 CCCCGACAAATTCATAGCCAGA 60.421 50.000 0.00 0.00 0.00 3.86
2974 4835 1.949525 CCCCGACAAATTCATAGCCAG 59.050 52.381 0.00 0.00 0.00 4.85
2975 4836 1.409521 CCCCCGACAAATTCATAGCCA 60.410 52.381 0.00 0.00 0.00 4.75
2976 4837 1.318576 CCCCCGACAAATTCATAGCC 58.681 55.000 0.00 0.00 0.00 3.93
2977 4838 2.052782 ACCCCCGACAAATTCATAGC 57.947 50.000 0.00 0.00 0.00 2.97
2978 4839 2.687935 CCAACCCCCGACAAATTCATAG 59.312 50.000 0.00 0.00 0.00 2.23
2979 4840 2.309162 TCCAACCCCCGACAAATTCATA 59.691 45.455 0.00 0.00 0.00 2.15
2980 4841 1.076350 TCCAACCCCCGACAAATTCAT 59.924 47.619 0.00 0.00 0.00 2.57
2981 4842 0.478942 TCCAACCCCCGACAAATTCA 59.521 50.000 0.00 0.00 0.00 2.57
2982 4843 1.476488 CATCCAACCCCCGACAAATTC 59.524 52.381 0.00 0.00 0.00 2.17
2983 4844 1.203125 ACATCCAACCCCCGACAAATT 60.203 47.619 0.00 0.00 0.00 1.82
2984 4845 0.407918 ACATCCAACCCCCGACAAAT 59.592 50.000 0.00 0.00 0.00 2.32
2985 4846 0.538516 CACATCCAACCCCCGACAAA 60.539 55.000 0.00 0.00 0.00 2.83
2986 4847 1.074072 CACATCCAACCCCCGACAA 59.926 57.895 0.00 0.00 0.00 3.18
2987 4848 1.843832 TCACATCCAACCCCCGACA 60.844 57.895 0.00 0.00 0.00 4.35
2988 4849 1.376812 GTCACATCCAACCCCCGAC 60.377 63.158 0.00 0.00 0.00 4.79
2989 4850 1.204786 ATGTCACATCCAACCCCCGA 61.205 55.000 0.00 0.00 0.00 5.14
2990 4851 0.544223 TATGTCACATCCAACCCCCG 59.456 55.000 0.00 0.00 0.00 5.73
2991 4852 2.586425 CATATGTCACATCCAACCCCC 58.414 52.381 0.00 0.00 0.00 5.40
2992 4853 1.956477 GCATATGTCACATCCAACCCC 59.044 52.381 4.29 0.00 0.00 4.95
2993 4854 1.956477 GGCATATGTCACATCCAACCC 59.044 52.381 1.45 0.00 0.00 4.11
2994 4855 2.653726 TGGCATATGTCACATCCAACC 58.346 47.619 5.74 0.00 0.00 3.77
2995 4856 4.440525 CCTTTGGCATATGTCACATCCAAC 60.441 45.833 10.13 0.00 33.81 3.77
2996 4857 3.700539 CCTTTGGCATATGTCACATCCAA 59.299 43.478 10.13 7.77 32.39 3.53
2997 4858 3.053768 TCCTTTGGCATATGTCACATCCA 60.054 43.478 10.13 1.13 0.00 3.41
2998 4859 3.554934 TCCTTTGGCATATGTCACATCC 58.445 45.455 10.13 0.00 0.00 3.51
2999 4860 4.022589 CCATCCTTTGGCATATGTCACATC 60.023 45.833 10.13 0.00 39.09 3.06
3000 4861 3.893200 CCATCCTTTGGCATATGTCACAT 59.107 43.478 10.13 0.00 39.09 3.21
3001 4862 3.289836 CCATCCTTTGGCATATGTCACA 58.710 45.455 10.13 2.17 39.09 3.58
3002 4863 3.996150 CCATCCTTTGGCATATGTCAC 57.004 47.619 10.13 0.00 39.09 3.67
3013 4874 3.319972 CCACCATGATAAGCCATCCTTTG 59.680 47.826 0.00 0.00 34.95 2.77
3014 4875 3.569491 CCACCATGATAAGCCATCCTTT 58.431 45.455 0.00 0.00 34.95 3.11
3015 4876 2.158415 CCCACCATGATAAGCCATCCTT 60.158 50.000 0.00 0.00 37.57 3.36
3016 4877 1.426598 CCCACCATGATAAGCCATCCT 59.573 52.381 0.00 0.00 32.09 3.24
3017 4878 1.548582 CCCCACCATGATAAGCCATCC 60.549 57.143 0.00 0.00 32.09 3.51
3018 4879 1.548582 CCCCCACCATGATAAGCCATC 60.549 57.143 0.00 0.00 0.00 3.51
3019 4880 0.484212 CCCCCACCATGATAAGCCAT 59.516 55.000 0.00 0.00 0.00 4.40
3020 4881 1.929745 CCCCCACCATGATAAGCCA 59.070 57.895 0.00 0.00 0.00 4.75
3021 4882 1.531602 GCCCCCACCATGATAAGCC 60.532 63.158 0.00 0.00 0.00 4.35
3022 4883 1.898574 CGCCCCCACCATGATAAGC 60.899 63.158 0.00 0.00 0.00 3.09
3023 4884 0.250467 CTCGCCCCCACCATGATAAG 60.250 60.000 0.00 0.00 0.00 1.73
3024 4885 0.986019 ACTCGCCCCCACCATGATAA 60.986 55.000 0.00 0.00 0.00 1.75
3025 4886 0.105401 TACTCGCCCCCACCATGATA 60.105 55.000 0.00 0.00 0.00 2.15
3026 4887 1.383943 TACTCGCCCCCACCATGAT 60.384 57.895 0.00 0.00 0.00 2.45
3027 4888 2.039787 TACTCGCCCCCACCATGA 59.960 61.111 0.00 0.00 0.00 3.07
3028 4889 1.622607 TTCTACTCGCCCCCACCATG 61.623 60.000 0.00 0.00 0.00 3.66
3029 4890 1.306654 TTCTACTCGCCCCCACCAT 60.307 57.895 0.00 0.00 0.00 3.55
3030 4891 2.120940 TTCTACTCGCCCCCACCA 59.879 61.111 0.00 0.00 0.00 4.17
3031 4892 2.582978 GTTCTACTCGCCCCCACC 59.417 66.667 0.00 0.00 0.00 4.61
3032 4893 2.183555 CGTTCTACTCGCCCCCAC 59.816 66.667 0.00 0.00 0.00 4.61
3033 4894 2.283388 ACGTTCTACTCGCCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
3034 4895 2.493501 GACGTTCTACTCGCCCCC 59.506 66.667 0.00 0.00 0.00 5.40
3035 4896 2.101770 CGACGTTCTACTCGCCCC 59.898 66.667 0.00 0.00 0.00 5.80
3039 4900 0.793478 CACCAGCGACGTTCTACTCG 60.793 60.000 0.00 0.00 0.00 4.18
3040 4901 1.071567 GCACCAGCGACGTTCTACTC 61.072 60.000 0.00 0.00 0.00 2.59
3041 4902 1.080705 GCACCAGCGACGTTCTACT 60.081 57.895 0.00 0.00 0.00 2.57
3042 4903 2.092882 GGCACCAGCGACGTTCTAC 61.093 63.158 0.00 0.00 43.41 2.59
3043 4904 2.260434 GGCACCAGCGACGTTCTA 59.740 61.111 0.00 0.00 43.41 2.10
3044 4905 3.616721 AGGCACCAGCGACGTTCT 61.617 61.111 0.00 0.00 43.41 3.01
3045 4906 3.414700 CAGGCACCAGCGACGTTC 61.415 66.667 0.00 0.00 43.41 3.95
3046 4907 4.988598 CCAGGCACCAGCGACGTT 62.989 66.667 0.00 0.00 43.41 3.99
3048 4909 4.680237 TTCCAGGCACCAGCGACG 62.680 66.667 0.00 0.00 43.41 5.12
3049 4910 2.281484 TTTCCAGGCACCAGCGAC 60.281 61.111 0.00 0.00 43.41 5.19
3050 4911 2.281484 GTTTCCAGGCACCAGCGA 60.281 61.111 0.00 0.00 43.41 4.93
3051 4912 3.726517 CGTTTCCAGGCACCAGCG 61.727 66.667 0.00 0.00 43.41 5.18
3052 4913 3.365265 CCGTTTCCAGGCACCAGC 61.365 66.667 0.00 0.00 41.10 4.85
3053 4914 2.484287 ATCCCGTTTCCAGGCACCAG 62.484 60.000 0.00 0.00 0.00 4.00
3054 4915 2.534396 ATCCCGTTTCCAGGCACCA 61.534 57.895 0.00 0.00 0.00 4.17
3055 4916 2.046285 CATCCCGTTTCCAGGCACC 61.046 63.158 0.00 0.00 0.00 5.01
3056 4917 1.002624 TCATCCCGTTTCCAGGCAC 60.003 57.895 0.00 0.00 0.00 5.01
3057 4918 1.299648 CTCATCCCGTTTCCAGGCA 59.700 57.895 0.00 0.00 0.00 4.75
3058 4919 1.452108 CCTCATCCCGTTTCCAGGC 60.452 63.158 0.00 0.00 0.00 4.85
3059 4920 1.452108 GCCTCATCCCGTTTCCAGG 60.452 63.158 0.00 0.00 0.00 4.45
3060 4921 1.815421 CGCCTCATCCCGTTTCCAG 60.815 63.158 0.00 0.00 0.00 3.86
3061 4922 1.832719 TTCGCCTCATCCCGTTTCCA 61.833 55.000 0.00 0.00 0.00 3.53
3062 4923 1.078708 TTCGCCTCATCCCGTTTCC 60.079 57.895 0.00 0.00 0.00 3.13
3063 4924 1.090052 CCTTCGCCTCATCCCGTTTC 61.090 60.000 0.00 0.00 0.00 2.78
3064 4925 1.078426 CCTTCGCCTCATCCCGTTT 60.078 57.895 0.00 0.00 0.00 3.60
3065 4926 2.584608 CCTTCGCCTCATCCCGTT 59.415 61.111 0.00 0.00 0.00 4.44
3066 4927 4.162690 GCCTTCGCCTCATCCCGT 62.163 66.667 0.00 0.00 0.00 5.28
3067 4928 3.466791 ATGCCTTCGCCTCATCCCG 62.467 63.158 0.00 0.00 0.00 5.14
3068 4929 1.895707 CATGCCTTCGCCTCATCCC 60.896 63.158 0.00 0.00 0.00 3.85
3069 4930 2.550101 GCATGCCTTCGCCTCATCC 61.550 63.158 6.36 0.00 0.00 3.51
3070 4931 1.820906 TGCATGCCTTCGCCTCATC 60.821 57.895 16.68 0.00 0.00 2.92
3071 4932 2.117156 GTGCATGCCTTCGCCTCAT 61.117 57.895 16.68 0.00 0.00 2.90
3072 4933 2.747460 GTGCATGCCTTCGCCTCA 60.747 61.111 16.68 0.00 0.00 3.86
3073 4934 3.869272 CGTGCATGCCTTCGCCTC 61.869 66.667 16.68 0.00 0.00 4.70
3083 4944 4.596180 GATTCGCCGGCGTGCATG 62.596 66.667 44.16 19.59 40.74 4.06
3084 4945 2.916502 TAAGATTCGCCGGCGTGCAT 62.917 55.000 44.16 33.24 40.74 3.96
3085 4946 3.650907 TAAGATTCGCCGGCGTGCA 62.651 57.895 44.16 30.42 40.74 4.57
3086 4947 2.888534 TAAGATTCGCCGGCGTGC 60.889 61.111 44.16 32.69 40.74 5.34
3087 4948 2.522638 GGTAAGATTCGCCGGCGTG 61.523 63.158 44.16 22.01 40.74 5.34
3088 4949 2.202837 GGTAAGATTCGCCGGCGT 60.203 61.111 44.16 29.95 40.74 5.68
3089 4950 2.965462 GGGTAAGATTCGCCGGCG 60.965 66.667 42.13 42.13 41.35 6.46
3090 4951 1.887707 CTGGGTAAGATTCGCCGGC 60.888 63.158 19.07 19.07 0.00 6.13
3091 4952 1.887707 GCTGGGTAAGATTCGCCGG 60.888 63.158 0.00 0.00 0.00 6.13
3092 4953 0.462047 AAGCTGGGTAAGATTCGCCG 60.462 55.000 0.00 0.00 23.58 6.46
3093 4954 1.300481 GAAGCTGGGTAAGATTCGCC 58.700 55.000 0.00 0.00 41.19 5.54
3097 4958 1.064389 GCCCTGAAGCTGGGTAAGATT 60.064 52.381 9.27 0.00 43.39 2.40
3098 4959 0.548510 GCCCTGAAGCTGGGTAAGAT 59.451 55.000 9.27 0.00 43.39 2.40
3099 4960 0.547712 AGCCCTGAAGCTGGGTAAGA 60.548 55.000 9.27 0.00 42.95 2.10
3100 4961 0.107459 GAGCCCTGAAGCTGGGTAAG 60.107 60.000 9.27 0.00 45.15 2.34
3101 4962 0.547712 AGAGCCCTGAAGCTGGGTAA 60.548 55.000 9.27 0.00 45.15 2.85
3102 4963 0.978146 GAGAGCCCTGAAGCTGGGTA 60.978 60.000 9.27 0.00 45.15 3.69
3103 4964 2.204059 AGAGCCCTGAAGCTGGGT 60.204 61.111 9.27 0.63 45.15 4.51
3104 4965 1.994507 AGAGAGCCCTGAAGCTGGG 60.995 63.158 3.13 3.13 45.15 4.45
3105 4966 1.221293 CAGAGAGCCCTGAAGCTGG 59.779 63.158 0.00 0.00 45.15 4.85
3106 4967 0.391395 CACAGAGAGCCCTGAAGCTG 60.391 60.000 5.51 0.00 45.15 4.24
3108 4969 1.078567 CCACAGAGAGCCCTGAAGC 60.079 63.158 5.51 0.00 37.59 3.86
3109 4970 0.536260 CTCCACAGAGAGCCCTGAAG 59.464 60.000 5.51 0.00 43.39 3.02
3110 4971 0.115152 TCTCCACAGAGAGCCCTGAA 59.885 55.000 5.51 0.00 44.42 3.02
3111 4972 1.776969 TCTCCACAGAGAGCCCTGA 59.223 57.895 5.51 0.00 44.42 3.86
3112 4973 4.449638 TCTCCACAGAGAGCCCTG 57.550 61.111 0.00 0.00 44.42 4.45
3119 4980 2.472029 AGGGGTGTTATCTCCACAGAG 58.528 52.381 0.00 0.00 41.93 3.35
3120 4981 2.642171 AGGGGTGTTATCTCCACAGA 57.358 50.000 0.00 0.00 33.49 3.41
3121 4982 3.133003 CAGTAGGGGTGTTATCTCCACAG 59.867 52.174 0.00 0.00 33.49 3.66
3122 4983 3.104512 CAGTAGGGGTGTTATCTCCACA 58.895 50.000 0.00 0.00 33.49 4.17
3123 4984 2.158943 GCAGTAGGGGTGTTATCTCCAC 60.159 54.545 0.00 0.00 0.00 4.02
3124 4985 2.116238 GCAGTAGGGGTGTTATCTCCA 58.884 52.381 0.00 0.00 0.00 3.86
3125 4986 2.103263 CAGCAGTAGGGGTGTTATCTCC 59.897 54.545 0.00 0.00 0.00 3.71
3126 4987 2.483889 GCAGCAGTAGGGGTGTTATCTC 60.484 54.545 0.00 0.00 38.49 2.75
3127 4988 1.486726 GCAGCAGTAGGGGTGTTATCT 59.513 52.381 0.00 0.00 38.49 1.98
3128 4989 1.486726 AGCAGCAGTAGGGGTGTTATC 59.513 52.381 0.00 0.00 38.49 1.75
3129 4990 1.486726 GAGCAGCAGTAGGGGTGTTAT 59.513 52.381 0.00 0.00 38.49 1.89
3130 4991 0.902531 GAGCAGCAGTAGGGGTGTTA 59.097 55.000 0.00 0.00 38.49 2.41
3131 4992 0.838122 AGAGCAGCAGTAGGGGTGTT 60.838 55.000 0.00 0.00 38.49 3.32
3132 4993 1.229336 AGAGCAGCAGTAGGGGTGT 60.229 57.895 0.00 0.00 38.49 4.16
3133 4994 1.220206 CAGAGCAGCAGTAGGGGTG 59.780 63.158 0.00 0.00 39.22 4.61
3134 4995 2.664081 GCAGAGCAGCAGTAGGGGT 61.664 63.158 0.00 0.00 0.00 4.95
3135 4996 2.188994 GCAGAGCAGCAGTAGGGG 59.811 66.667 0.00 0.00 0.00 4.79
3136 4997 2.202851 CGCAGAGCAGCAGTAGGG 60.203 66.667 0.00 0.00 0.00 3.53
3137 4998 2.202851 CCGCAGAGCAGCAGTAGG 60.203 66.667 0.00 0.00 0.00 3.18
3138 4999 2.202851 CCCGCAGAGCAGCAGTAG 60.203 66.667 0.00 0.00 0.00 2.57
3139 5000 3.774528 CCCCGCAGAGCAGCAGTA 61.775 66.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.