Multiple sequence alignment - TraesCS7B01G093900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G093900 chr7B 100.000 7141 0 0 1 7141 107642824 107649964 0.000000e+00 13188.0
1 TraesCS7B01G093900 chr7B 89.855 138 14 0 731 868 382275515 382275378 2.050000e-40 178.0
2 TraesCS7B01G093900 chr7B 94.000 50 3 0 6667 6716 320309735 320309784 7.680000e-10 76.8
3 TraesCS7B01G093900 chr7A 93.950 2628 106 18 2599 5197 145490030 145492633 0.000000e+00 3923.0
4 TraesCS7B01G093900 chr7A 87.122 1390 81 44 5294 6639 145492633 145493968 0.000000e+00 1485.0
5 TraesCS7B01G093900 chr7A 90.587 903 32 19 930 1808 145488484 145489357 0.000000e+00 1147.0
6 TraesCS7B01G093900 chr7A 92.832 572 19 3 1941 2492 145489460 145490029 0.000000e+00 809.0
7 TraesCS7B01G093900 chr7A 82.100 743 93 29 1 734 688251655 688250944 3.690000e-167 599.0
8 TraesCS7B01G093900 chr7A 85.379 383 24 16 6773 7141 145493963 145494327 1.130000e-97 368.0
9 TraesCS7B01G093900 chr7A 96.000 50 2 0 6667 6716 474954327 474954278 1.650000e-11 82.4
10 TraesCS7B01G093900 chr7D 93.420 2629 129 21 2599 5197 143995515 143992901 0.000000e+00 3856.0
11 TraesCS7B01G093900 chr7D 93.743 1726 47 20 5461 7141 143992691 143990982 0.000000e+00 2532.0
12 TraesCS7B01G093900 chr7D 94.567 589 23 2 1941 2521 143996083 143995496 0.000000e+00 902.0
13 TraesCS7B01G093900 chr7D 94.004 567 20 4 930 1489 143997125 143996566 0.000000e+00 846.0
14 TraesCS7B01G093900 chr7D 93.491 338 16 3 1480 1814 143996514 143996180 1.380000e-136 497.0
15 TraesCS7B01G093900 chr7D 84.058 345 36 13 1 332 140795228 140794890 1.500000e-81 315.0
16 TraesCS7B01G093900 chr7D 89.231 130 9 3 5294 5421 143992901 143992775 2.670000e-34 158.0
17 TraesCS7B01G093900 chr7D 96.000 50 1 1 6668 6716 109301510 109301461 5.940000e-11 80.5
18 TraesCS7B01G093900 chr1B 93.919 740 38 4 1 734 405389238 405388500 0.000000e+00 1110.0
19 TraesCS7B01G093900 chr1B 91.492 717 46 9 17 733 670037868 670037167 0.000000e+00 972.0
20 TraesCS7B01G093900 chr1B 98.519 135 2 0 731 865 212121601 212121467 9.260000e-59 239.0
21 TraesCS7B01G093900 chr1B 91.045 134 11 1 734 867 678849417 678849285 5.690000e-41 180.0
22 TraesCS7B01G093900 chr1B 100.000 39 0 0 2540 2578 41356842 41356804 9.940000e-09 73.1
23 TraesCS7B01G093900 chr6D 91.161 758 38 3 1 730 93884256 93885012 0.000000e+00 1002.0
24 TraesCS7B01G093900 chr6D 94.215 121 7 0 1823 1943 431160709 431160829 1.220000e-42 185.0
25 TraesCS7B01G093900 chr6D 96.000 50 2 0 6667 6716 355863418 355863369 1.650000e-11 82.4
26 TraesCS7B01G093900 chr6B 90.789 760 43 7 1 733 57748102 57747343 0.000000e+00 990.0
27 TraesCS7B01G093900 chr6B 92.754 138 10 0 731 868 619531022 619530885 4.370000e-47 200.0
28 TraesCS7B01G093900 chr6B 95.763 118 5 0 1830 1947 652640660 652640543 2.630000e-44 191.0
29 TraesCS7B01G093900 chr6B 91.912 136 10 1 733 867 511571614 511571749 9.460000e-44 189.0
30 TraesCS7B01G093900 chr6B 93.651 126 6 2 1830 1955 119526858 119526981 3.400000e-43 187.0
31 TraesCS7B01G093900 chr6B 92.308 130 7 3 1830 1957 550782388 550782260 1.580000e-41 182.0
32 TraesCS7B01G093900 chr3B 86.461 746 63 26 1 735 764457740 764457022 0.000000e+00 784.0
33 TraesCS7B01G093900 chr3B 85.135 740 76 23 1 730 764524957 764524242 0.000000e+00 726.0
34 TraesCS7B01G093900 chr3B 89.744 78 4 3 864 939 627977753 627977828 5.900000e-16 97.1
35 TraesCS7B01G093900 chr3B 90.278 72 3 3 870 939 595495491 595495422 2.740000e-14 91.6
36 TraesCS7B01G093900 chr3B 100.000 44 0 0 2535 2578 805988744 805988787 1.650000e-11 82.4
37 TraesCS7B01G093900 chr5D 82.575 769 89 20 1 734 522484827 522485585 2.810000e-178 636.0
38 TraesCS7B01G093900 chr5D 85.654 237 31 2 2283 2517 434580424 434580189 5.530000e-61 246.0
39 TraesCS7B01G093900 chr5D 85.532 235 32 2 2289 2521 327480591 327480357 1.990000e-60 244.0
40 TraesCS7B01G093900 chr3D 81.117 752 73 42 1 730 40714550 40715254 8.150000e-149 538.0
41 TraesCS7B01G093900 chr3D 96.552 116 4 0 1830 1945 537154814 537154699 7.310000e-45 193.0
42 TraesCS7B01G093900 chr3D 93.939 66 3 1 864 928 500885523 500885588 1.640000e-16 99.0
43 TraesCS7B01G093900 chr3D 91.228 57 3 2 6661 6716 73853143 73853088 7.680000e-10 76.8
44 TraesCS7B01G093900 chr5A 80.263 760 101 36 1 730 649233113 649232373 1.760000e-145 527.0
45 TraesCS7B01G093900 chr5A 88.655 238 24 3 2286 2521 314669894 314670130 3.260000e-73 287.0
46 TraesCS7B01G093900 chr5A 91.971 137 11 0 731 867 601169032 601168896 7.310000e-45 193.0
47 TraesCS7B01G093900 chr5A 92.857 56 3 1 6662 6716 328945824 328945879 5.940000e-11 80.5
48 TraesCS7B01G093900 chr5A 100.000 39 0 0 2540 2578 475376795 475376833 9.940000e-09 73.1
49 TraesCS7B01G093900 chr5A 100.000 39 0 0 2540 2578 668154462 668154500 9.940000e-09 73.1
50 TraesCS7B01G093900 chr2A 82.732 527 61 20 225 730 88725849 88726366 6.570000e-120 442.0
51 TraesCS7B01G093900 chr2A 87.854 247 25 2 2279 2521 194713127 194713372 1.170000e-72 285.0
52 TraesCS7B01G093900 chr2B 91.150 226 20 0 2296 2521 45729546 45729771 2.500000e-79 307.0
53 TraesCS7B01G093900 chr2B 91.304 138 12 0 731 868 470786192 470786055 9.460000e-44 189.0
54 TraesCS7B01G093900 chr5B 88.085 235 27 1 2286 2519 264288445 264288679 1.960000e-70 278.0
55 TraesCS7B01G093900 chr5B 88.889 225 24 1 2289 2513 655285254 655285031 7.060000e-70 276.0
56 TraesCS7B01G093900 chr5B 92.754 138 10 0 731 868 496093663 496093526 4.370000e-47 200.0
57 TraesCS7B01G093900 chr5B 96.522 115 4 0 1828 1942 82456864 82456978 2.630000e-44 191.0
58 TraesCS7B01G093900 chr5B 88.462 78 5 3 864 939 593986314 593986389 2.740000e-14 91.6
59 TraesCS7B01G093900 chr5B 90.278 72 3 3 870 939 646894128 646894059 2.740000e-14 91.6
60 TraesCS7B01G093900 chr5B 91.228 57 4 1 6661 6716 278229853 278229909 7.680000e-10 76.8
61 TraesCS7B01G093900 chrUn 86.441 236 26 1 2286 2521 318938344 318938573 3.310000e-63 254.0
62 TraesCS7B01G093900 chr1A 85.408 233 31 3 2289 2521 511603424 511603195 9.260000e-59 239.0
63 TraesCS7B01G093900 chr1A 88.043 92 9 2 1181 1272 50519929 50520018 2.720000e-19 108.0
64 TraesCS7B01G093900 chr1A 92.453 53 4 0 6667 6719 37438633 37438581 7.680000e-10 76.8
65 TraesCS7B01G093900 chr1A 100.000 39 0 0 2540 2578 249382275 249382237 9.940000e-09 73.1
66 TraesCS7B01G093900 chr4B 97.368 114 3 0 1830 1943 551728850 551728963 2.030000e-45 195.0
67 TraesCS7B01G093900 chr4B 91.304 138 12 0 731 868 98328237 98328100 9.460000e-44 189.0
68 TraesCS7B01G093900 chr4B 88.462 78 5 3 864 939 652468090 652468165 2.740000e-14 91.6
69 TraesCS7B01G093900 chr4B 100.000 39 0 0 2540 2578 94263358 94263396 9.940000e-09 73.1
70 TraesCS7B01G093900 chr4B 100.000 39 0 0 2540 2578 486780025 486780063 9.940000e-09 73.1
71 TraesCS7B01G093900 chr4B 100.000 30 0 0 6687 6716 471993787 471993758 1.000000e-03 56.5
72 TraesCS7B01G093900 chr4D 96.552 116 4 0 1830 1945 372509153 372509038 7.310000e-45 193.0
73 TraesCS7B01G093900 chr2D 94.262 122 5 2 1830 1950 593503323 593503203 1.220000e-42 185.0
74 TraesCS7B01G093900 chr2D 92.647 68 4 1 864 930 550637167 550637234 5.900000e-16 97.1
75 TraesCS7B01G093900 chr2D 94.000 50 2 1 6667 6716 547771858 547771810 2.760000e-09 75.0
76 TraesCS7B01G093900 chr2D 95.000 40 1 1 6687 6725 373904496 373904457 2.150000e-05 62.1
77 TraesCS7B01G093900 chr2D 94.737 38 2 0 6687 6724 79056196 79056159 7.740000e-05 60.2
78 TraesCS7B01G093900 chr1D 93.939 66 3 1 864 928 31419983 31419918 1.640000e-16 99.0
79 TraesCS7B01G093900 chr1D 92.647 68 4 1 864 930 318340114 318340181 5.900000e-16 97.1
80 TraesCS7B01G093900 chr1D 100.000 31 0 0 6687 6717 314115855 314115885 2.780000e-04 58.4
81 TraesCS7B01G093900 chr3A 91.667 60 3 2 6662 6719 634943290 634943231 1.650000e-11 82.4
82 TraesCS7B01G093900 chr3A 91.489 47 4 0 6665 6711 521307092 521307138 1.660000e-06 65.8
83 TraesCS7B01G093900 chr6A 100.000 39 0 0 2540 2578 181127645 181127683 9.940000e-09 73.1
84 TraesCS7B01G093900 chr6A 100.000 39 0 0 2540 2578 568050418 568050380 9.940000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G093900 chr7B 107642824 107649964 7140 False 13188.000000 13188 100.000 1 7141 1 chr7B.!!$F1 7140
1 TraesCS7B01G093900 chr7A 145488484 145494327 5843 False 1546.400000 3923 89.974 930 7141 5 chr7A.!!$F1 6211
2 TraesCS7B01G093900 chr7A 688250944 688251655 711 True 599.000000 599 82.100 1 734 1 chr7A.!!$R2 733
3 TraesCS7B01G093900 chr7D 143990982 143997125 6143 True 1465.166667 3856 93.076 930 7141 6 chr7D.!!$R3 6211
4 TraesCS7B01G093900 chr1B 405388500 405389238 738 True 1110.000000 1110 93.919 1 734 1 chr1B.!!$R3 733
5 TraesCS7B01G093900 chr1B 670037167 670037868 701 True 972.000000 972 91.492 17 733 1 chr1B.!!$R4 716
6 TraesCS7B01G093900 chr6D 93884256 93885012 756 False 1002.000000 1002 91.161 1 730 1 chr6D.!!$F1 729
7 TraesCS7B01G093900 chr6B 57747343 57748102 759 True 990.000000 990 90.789 1 733 1 chr6B.!!$R1 732
8 TraesCS7B01G093900 chr3B 764457022 764457740 718 True 784.000000 784 86.461 1 735 1 chr3B.!!$R2 734
9 TraesCS7B01G093900 chr3B 764524242 764524957 715 True 726.000000 726 85.135 1 730 1 chr3B.!!$R3 729
10 TraesCS7B01G093900 chr5D 522484827 522485585 758 False 636.000000 636 82.575 1 734 1 chr5D.!!$F1 733
11 TraesCS7B01G093900 chr3D 40714550 40715254 704 False 538.000000 538 81.117 1 730 1 chr3D.!!$F1 729
12 TraesCS7B01G093900 chr5A 649232373 649233113 740 True 527.000000 527 80.263 1 730 1 chr5A.!!$R2 729
13 TraesCS7B01G093900 chr2A 88725849 88726366 517 False 442.000000 442 82.732 225 730 1 chr2A.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1141 0.321122 ACTGGAAAAGCAGCCTCGAG 60.321 55.0 5.13 5.13 0.00 4.04 F
1619 1874 0.107848 ACGATTCCACGGATCCAACC 60.108 55.0 13.41 0.00 37.61 3.77 F
2558 2839 0.178981 ATGGTCACAAGGCAGCAACT 60.179 50.0 0.00 0.00 0.00 3.16 F
2585 2866 0.322456 TGCGCCAAGGCTACTGATTT 60.322 50.0 4.18 0.00 39.32 2.17 F
4468 4777 0.396811 ACCTGTGTACCTCCAAGTGC 59.603 55.0 0.00 0.00 0.00 4.40 F
4887 5203 0.043334 AGCCTCTCCTTGCTCCCTTA 59.957 55.0 0.00 0.00 30.33 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2549 2830 0.039165 GCAGTGGTAAAGTTGCTGCC 60.039 55.000 0.00 0.00 44.61 4.85 R
2566 2847 0.322456 AAATCAGTAGCCTTGGCGCA 60.322 50.000 10.83 0.00 0.00 6.09 R
4128 4437 1.408340 TGGATTTCGGACGGCGTATAA 59.592 47.619 14.74 4.63 0.00 0.98 R
4496 4806 1.801242 TGGAGCCCGATCCATTCTTA 58.199 50.000 0.00 0.00 44.56 2.10 R
5292 5609 0.109781 GCCACGAAACGCAACATGAT 60.110 50.000 0.00 0.00 0.00 2.45 R
6268 6652 0.242017 CTAAAAGGCAGCTGCGCTTT 59.758 50.000 32.15 32.15 43.26 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 129 8.785329 AAATGAAGAACAGAGAGATAGGAAAC 57.215 34.615 0.00 0.00 0.00 2.78
124 131 7.303182 TGAAGAACAGAGAGATAGGAAACAA 57.697 36.000 0.00 0.00 0.00 2.83
138 145 1.880027 GAAACAAGATGGCTCACCGTT 59.120 47.619 0.00 0.00 39.70 4.44
536 703 2.783510 CCATGGGATAGGGGTACACTTT 59.216 50.000 2.85 0.00 0.00 2.66
537 704 3.181443 CCATGGGATAGGGGTACACTTTC 60.181 52.174 2.85 0.00 0.00 2.62
543 710 6.217900 TGGGATAGGGGTACACTTTCATTTTA 59.782 38.462 0.00 0.00 0.00 1.52
590 757 4.205587 CCAAAATCCTGAGATTCTGGGAG 58.794 47.826 9.80 0.00 44.04 4.30
675 842 7.795482 TTGGAAGTGAATTCGAGTTCTTTTA 57.205 32.000 19.74 0.00 38.95 1.52
704 871 6.402983 CCAGATTTTCCAGACTGAAATTCTCG 60.403 42.308 3.32 4.05 40.37 4.04
712 879 6.152831 TCCAGACTGAAATTCTCGACAATCTA 59.847 38.462 3.32 0.00 0.00 1.98
735 902 2.633967 TCAAAAGAACTGGGCCGTAGTA 59.366 45.455 11.24 0.00 0.00 1.82
736 903 2.740447 CAAAAGAACTGGGCCGTAGTAC 59.260 50.000 11.24 0.00 0.00 2.73
737 904 1.636148 AAGAACTGGGCCGTAGTACA 58.364 50.000 11.24 0.00 0.00 2.90
738 905 0.893447 AGAACTGGGCCGTAGTACAC 59.107 55.000 11.24 6.96 0.00 2.90
739 906 0.893447 GAACTGGGCCGTAGTACACT 59.107 55.000 11.24 0.00 0.00 3.55
740 907 1.274447 GAACTGGGCCGTAGTACACTT 59.726 52.381 11.24 0.00 0.00 3.16
741 908 0.606604 ACTGGGCCGTAGTACACTTG 59.393 55.000 9.35 0.00 0.00 3.16
742 909 0.892755 CTGGGCCGTAGTACACTTGA 59.107 55.000 0.00 0.00 0.00 3.02
743 910 1.480954 CTGGGCCGTAGTACACTTGAT 59.519 52.381 0.00 0.00 0.00 2.57
744 911 1.903860 TGGGCCGTAGTACACTTGATT 59.096 47.619 0.00 0.00 0.00 2.57
745 912 2.093869 TGGGCCGTAGTACACTTGATTC 60.094 50.000 0.00 0.00 0.00 2.52
746 913 2.547826 GGCCGTAGTACACTTGATTCC 58.452 52.381 0.38 0.00 0.00 3.01
747 914 2.093869 GGCCGTAGTACACTTGATTCCA 60.094 50.000 0.38 0.00 0.00 3.53
748 915 3.431766 GGCCGTAGTACACTTGATTCCAT 60.432 47.826 0.38 0.00 0.00 3.41
749 916 4.189231 GCCGTAGTACACTTGATTCCATT 58.811 43.478 0.38 0.00 0.00 3.16
750 917 4.034048 GCCGTAGTACACTTGATTCCATTG 59.966 45.833 0.38 0.00 0.00 2.82
751 918 4.570772 CCGTAGTACACTTGATTCCATTGG 59.429 45.833 0.38 0.00 0.00 3.16
752 919 5.416083 CGTAGTACACTTGATTCCATTGGA 58.584 41.667 0.00 0.00 0.00 3.53
753 920 5.872617 CGTAGTACACTTGATTCCATTGGAA 59.127 40.000 20.09 20.09 46.39 3.53
754 921 6.183360 CGTAGTACACTTGATTCCATTGGAAC 60.183 42.308 20.21 13.98 45.07 3.62
755 922 5.630121 AGTACACTTGATTCCATTGGAACA 58.370 37.500 20.21 16.15 45.07 3.18
791 958 6.462552 TTCAATCCTGTGAATCAAACAACA 57.537 33.333 0.00 0.00 32.56 3.33
792 959 6.462552 TCAATCCTGTGAATCAAACAACAA 57.537 33.333 0.00 0.00 0.00 2.83
793 960 6.871844 TCAATCCTGTGAATCAAACAACAAA 58.128 32.000 0.00 0.00 0.00 2.83
794 961 7.499292 TCAATCCTGTGAATCAAACAACAAAT 58.501 30.769 0.00 0.00 0.00 2.32
795 962 7.438757 TCAATCCTGTGAATCAAACAACAAATG 59.561 33.333 0.00 0.00 0.00 2.32
796 963 6.219417 TCCTGTGAATCAAACAACAAATGT 57.781 33.333 0.00 0.00 46.82 2.71
797 964 7.340122 TCCTGTGAATCAAACAACAAATGTA 57.660 32.000 0.00 0.00 42.99 2.29
798 965 7.776107 TCCTGTGAATCAAACAACAAATGTAA 58.224 30.769 0.00 0.00 42.99 2.41
799 966 7.920151 TCCTGTGAATCAAACAACAAATGTAAG 59.080 33.333 0.00 0.00 42.99 2.34
800 967 7.920151 CCTGTGAATCAAACAACAAATGTAAGA 59.080 33.333 0.00 0.00 42.99 2.10
801 968 9.299963 CTGTGAATCAAACAACAAATGTAAGAA 57.700 29.630 0.00 0.00 42.99 2.52
802 969 9.645059 TGTGAATCAAACAACAAATGTAAGAAA 57.355 25.926 0.00 0.00 42.99 2.52
846 1013 8.899887 TCCTCCAAAAATTTCATAGAATTCCT 57.100 30.769 0.65 0.00 0.00 3.36
847 1014 9.325248 TCCTCCAAAAATTTCATAGAATTCCTT 57.675 29.630 0.65 0.00 0.00 3.36
848 1015 9.948964 CCTCCAAAAATTTCATAGAATTCCTTT 57.051 29.630 0.65 0.00 0.00 3.11
867 1034 5.982890 CTTTGAATCAAAGGAGCCCTAAA 57.017 39.130 23.96 0.00 44.75 1.85
868 1035 6.535963 CTTTGAATCAAAGGAGCCCTAAAT 57.464 37.500 23.96 0.00 44.75 1.40
869 1036 7.645058 CTTTGAATCAAAGGAGCCCTAAATA 57.355 36.000 23.96 0.00 44.75 1.40
870 1037 7.645058 TTTGAATCAAAGGAGCCCTAAATAG 57.355 36.000 4.03 0.00 31.13 1.73
871 1038 6.575244 TGAATCAAAGGAGCCCTAAATAGA 57.425 37.500 0.00 0.00 31.13 1.98
872 1039 6.595682 TGAATCAAAGGAGCCCTAAATAGAG 58.404 40.000 0.00 0.00 31.13 2.43
873 1040 6.386927 TGAATCAAAGGAGCCCTAAATAGAGA 59.613 38.462 0.00 0.00 31.13 3.10
874 1041 7.072961 TGAATCAAAGGAGCCCTAAATAGAGAT 59.927 37.037 0.00 0.00 31.13 2.75
875 1042 8.511748 AATCAAAGGAGCCCTAAATAGAGATA 57.488 34.615 0.00 0.00 31.13 1.98
876 1043 8.692682 ATCAAAGGAGCCCTAAATAGAGATAT 57.307 34.615 0.00 0.00 31.13 1.63
877 1044 9.790297 ATCAAAGGAGCCCTAAATAGAGATATA 57.210 33.333 0.00 0.00 31.13 0.86
878 1045 9.036980 TCAAAGGAGCCCTAAATAGAGATATAC 57.963 37.037 0.00 0.00 31.13 1.47
879 1046 9.041354 CAAAGGAGCCCTAAATAGAGATATACT 57.959 37.037 0.00 0.00 31.13 2.12
881 1048 9.930158 AAGGAGCCCTAAATAGAGATATACTAG 57.070 37.037 0.00 0.00 31.13 2.57
882 1049 9.075845 AGGAGCCCTAAATAGAGATATACTAGT 57.924 37.037 0.00 0.00 28.47 2.57
883 1050 9.703677 GGAGCCCTAAATAGAGATATACTAGTT 57.296 37.037 0.00 0.00 33.74 2.24
900 1067 5.791666 ACTAGTTTAATCCTTATAGCCCGC 58.208 41.667 0.00 0.00 0.00 6.13
901 1068 4.976540 AGTTTAATCCTTATAGCCCGCT 57.023 40.909 0.00 0.00 0.00 5.52
902 1069 4.642429 AGTTTAATCCTTATAGCCCGCTG 58.358 43.478 0.00 0.00 0.00 5.18
903 1070 4.347000 AGTTTAATCCTTATAGCCCGCTGA 59.653 41.667 0.00 0.00 0.00 4.26
904 1071 2.841442 AATCCTTATAGCCCGCTGAC 57.159 50.000 0.00 0.00 0.00 3.51
905 1072 2.016905 ATCCTTATAGCCCGCTGACT 57.983 50.000 0.00 0.00 0.00 3.41
906 1073 1.329256 TCCTTATAGCCCGCTGACTC 58.671 55.000 0.00 0.00 0.00 3.36
907 1074 1.040646 CCTTATAGCCCGCTGACTCA 58.959 55.000 0.00 0.00 0.00 3.41
908 1075 1.000283 CCTTATAGCCCGCTGACTCAG 60.000 57.143 1.21 1.21 34.12 3.35
925 1092 8.621532 CTGACTCAGCTCTATTATACTTCTCT 57.378 38.462 0.00 0.00 0.00 3.10
926 1093 9.719355 CTGACTCAGCTCTATTATACTTCTCTA 57.281 37.037 0.00 0.00 0.00 2.43
974 1141 0.321122 ACTGGAAAAGCAGCCTCGAG 60.321 55.000 5.13 5.13 0.00 4.04
996 1165 2.551912 CCAAAAAGAGGCACGCGGT 61.552 57.895 12.47 0.00 0.00 5.68
1390 1577 4.446413 GGGAGGTACGCGTGGGTG 62.446 72.222 24.59 0.00 0.00 4.61
1412 1599 9.106070 GGGTGTTCCTGTAATTTAATACTGTAG 57.894 37.037 0.00 0.00 0.00 2.74
1458 1652 9.040939 ACATATACAGTATACGTACGTTGTACA 57.959 33.333 27.92 17.74 35.92 2.90
1514 1769 5.509163 GCACTATACCTCGATTTGCCTCTTA 60.509 44.000 0.00 0.00 0.00 2.10
1619 1874 0.107848 ACGATTCCACGGATCCAACC 60.108 55.000 13.41 0.00 37.61 3.77
1691 1949 5.504994 GCTGTACTTGTCGACATTTGGAAAA 60.505 40.000 20.80 0.00 0.00 2.29
1755 2016 9.777297 AAAAATGTGGTAGACTAATGCAAAATT 57.223 25.926 0.00 0.00 0.00 1.82
1793 2054 3.122278 CGGCGAACTCGATTAAGAAACAA 59.878 43.478 0.00 0.00 43.02 2.83
1811 2072 7.836842 AGAAACAAGGTAGCTTTCTTTTTCAA 58.163 30.769 19.66 0.00 31.52 2.69
1814 2075 8.840833 AACAAGGTAGCTTTCTTTTTCAAAAA 57.159 26.923 3.96 0.00 0.00 1.94
1815 2076 9.448438 AACAAGGTAGCTTTCTTTTTCAAAAAT 57.552 25.926 3.96 0.00 0.00 1.82
1848 2109 9.906660 AAAATGTCTAAATACGAAGCAAAATGA 57.093 25.926 0.00 0.00 0.00 2.57
1849 2110 9.559958 AAATGTCTAAATACGAAGCAAAATGAG 57.440 29.630 0.00 0.00 0.00 2.90
1850 2111 7.667043 TGTCTAAATACGAAGCAAAATGAGT 57.333 32.000 0.00 0.00 0.00 3.41
1851 2112 7.518161 TGTCTAAATACGAAGCAAAATGAGTG 58.482 34.615 0.00 0.00 0.00 3.51
1853 2114 8.227791 GTCTAAATACGAAGCAAAATGAGTGAA 58.772 33.333 0.00 0.00 0.00 3.18
1855 2116 9.214953 CTAAATACGAAGCAAAATGAGTGAATC 57.785 33.333 0.00 0.00 0.00 2.52
1858 2119 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
1860 2121 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
1902 2163 6.519679 ACATCCGTATGTAGTTTGTAGTGA 57.480 37.500 0.00 0.00 44.66 3.41
1903 2164 6.927416 ACATCCGTATGTAGTTTGTAGTGAA 58.073 36.000 0.00 0.00 44.66 3.18
1904 2165 7.380536 ACATCCGTATGTAGTTTGTAGTGAAA 58.619 34.615 0.00 0.00 44.66 2.69
1905 2166 8.038944 ACATCCGTATGTAGTTTGTAGTGAAAT 58.961 33.333 0.00 0.00 44.66 2.17
1906 2167 8.540492 CATCCGTATGTAGTTTGTAGTGAAATC 58.460 37.037 0.00 0.00 0.00 2.17
1907 2168 7.833786 TCCGTATGTAGTTTGTAGTGAAATCT 58.166 34.615 0.00 0.00 0.00 2.40
1909 2170 7.974501 CCGTATGTAGTTTGTAGTGAAATCTCT 59.025 37.037 0.00 0.00 0.00 3.10
1910 2171 9.999009 CGTATGTAGTTTGTAGTGAAATCTCTA 57.001 33.333 0.00 0.00 0.00 2.43
1936 2197 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1937 2198 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1938 2199 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1939 2200 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1969 2230 6.766467 AGTTTGAGTTCTTTGATTCGGTAGTT 59.234 34.615 0.00 0.00 0.00 2.24
1973 2234 7.383687 TGAGTTCTTTGATTCGGTAGTTGTAT 58.616 34.615 0.00 0.00 0.00 2.29
1984 2245 6.417191 TCGGTAGTTGTATTGATTTTGCTC 57.583 37.500 0.00 0.00 0.00 4.26
2184 2445 0.748005 ATGCCGATTTCCAACCGGAG 60.748 55.000 9.46 0.00 44.10 4.63
2218 2479 5.409712 TCATGAGAACCATCCCATATCTCT 58.590 41.667 0.00 0.00 37.87 3.10
2262 2523 0.465460 TTCAAGCACGCTGGGAGTTT 60.465 50.000 0.00 0.00 0.00 2.66
2277 2538 3.227614 GGAGTTTGGTAAGCCTGGAAAA 58.772 45.455 0.00 0.00 35.27 2.29
2314 2575 6.069705 TCCCTCCGTTTTTATTTACTCCAT 57.930 37.500 0.00 0.00 0.00 3.41
2343 2604 4.511826 AGCTTCGACCTAAGTCAAACTTTG 59.488 41.667 0.00 0.00 43.73 2.77
2366 2627 9.629878 TTTGTAAAGGTTGACCAAGTTTATAGA 57.370 29.630 2.56 0.00 38.89 1.98
2459 2740 7.498900 TGATATTGATTTGGTACTGTGGATGTC 59.501 37.037 0.00 0.00 0.00 3.06
2519 2800 7.573968 AAGTTTGACTTGAGACAAAGCTAAT 57.426 32.000 8.49 0.00 39.51 1.73
2520 2801 8.677148 AAGTTTGACTTGAGACAAAGCTAATA 57.323 30.769 8.49 0.00 39.51 0.98
2521 2802 8.677148 AGTTTGACTTGAGACAAAGCTAATAA 57.323 30.769 8.49 0.00 39.51 1.40
2522 2803 9.120538 AGTTTGACTTGAGACAAAGCTAATAAA 57.879 29.630 8.49 0.00 39.51 1.40
2523 2804 9.730420 GTTTGACTTGAGACAAAGCTAATAAAA 57.270 29.630 8.49 0.00 39.51 1.52
2541 2822 2.674958 AAAAAGGGCAGCCAGGATG 58.325 52.632 15.19 0.00 0.00 3.51
2553 2834 2.864114 CAGGATGGTCACAAGGCAG 58.136 57.895 0.00 0.00 0.00 4.85
2554 2835 1.001641 AGGATGGTCACAAGGCAGC 60.002 57.895 0.00 0.00 0.00 5.25
2555 2836 1.303561 GGATGGTCACAAGGCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
2556 2837 0.895100 GGATGGTCACAAGGCAGCAA 60.895 55.000 0.00 0.00 0.00 3.91
2557 2838 0.242017 GATGGTCACAAGGCAGCAAC 59.758 55.000 0.00 0.00 0.00 4.17
2558 2839 0.178981 ATGGTCACAAGGCAGCAACT 60.179 50.000 0.00 0.00 0.00 3.16
2559 2840 0.395586 TGGTCACAAGGCAGCAACTT 60.396 50.000 0.00 0.00 0.00 2.66
2560 2841 0.746659 GGTCACAAGGCAGCAACTTT 59.253 50.000 0.00 0.00 0.00 2.66
2561 2842 1.953686 GGTCACAAGGCAGCAACTTTA 59.046 47.619 0.00 0.00 0.00 1.85
2562 2843 2.287608 GGTCACAAGGCAGCAACTTTAC 60.288 50.000 0.00 0.00 0.00 2.01
2563 2844 1.953686 TCACAAGGCAGCAACTTTACC 59.046 47.619 0.00 0.00 0.00 2.85
2564 2845 1.680735 CACAAGGCAGCAACTTTACCA 59.319 47.619 0.00 0.00 0.00 3.25
2565 2846 1.681264 ACAAGGCAGCAACTTTACCAC 59.319 47.619 0.00 0.00 0.00 4.16
2566 2847 1.956477 CAAGGCAGCAACTTTACCACT 59.044 47.619 0.00 0.00 0.00 4.00
2567 2848 1.609208 AGGCAGCAACTTTACCACTG 58.391 50.000 0.00 0.00 0.00 3.66
2568 2849 3.479255 GCAGCAACTTTACCACTGC 57.521 52.632 0.00 0.00 45.95 4.40
2569 2850 0.385974 GCAGCAACTTTACCACTGCG 60.386 55.000 0.00 0.00 43.65 5.18
2570 2851 0.385974 CAGCAACTTTACCACTGCGC 60.386 55.000 0.00 0.00 39.80 6.09
2571 2852 1.081442 GCAACTTTACCACTGCGCC 60.081 57.895 4.18 0.00 0.00 6.53
2572 2853 1.791103 GCAACTTTACCACTGCGCCA 61.791 55.000 4.18 0.00 0.00 5.69
2573 2854 0.665835 CAACTTTACCACTGCGCCAA 59.334 50.000 4.18 0.00 0.00 4.52
2574 2855 0.951558 AACTTTACCACTGCGCCAAG 59.048 50.000 4.18 0.00 0.00 3.61
2575 2856 0.889186 ACTTTACCACTGCGCCAAGG 60.889 55.000 4.18 6.21 0.00 3.61
2576 2857 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2577 2858 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2578 2859 1.832719 TTACCACTGCGCCAAGGCTA 61.833 55.000 4.18 0.00 39.32 3.93
2579 2860 2.515996 TACCACTGCGCCAAGGCTAC 62.516 60.000 4.18 1.80 39.32 3.58
2580 2861 2.046892 CACTGCGCCAAGGCTACT 60.047 61.111 4.18 0.00 39.32 2.57
2581 2862 2.046892 ACTGCGCCAAGGCTACTG 60.047 61.111 4.18 7.75 39.32 2.74
2582 2863 2.265739 CTGCGCCAAGGCTACTGA 59.734 61.111 4.18 0.00 39.32 3.41
2583 2864 1.153289 CTGCGCCAAGGCTACTGAT 60.153 57.895 4.18 0.00 39.32 2.90
2584 2865 0.745845 CTGCGCCAAGGCTACTGATT 60.746 55.000 4.18 0.00 39.32 2.57
2585 2866 0.322456 TGCGCCAAGGCTACTGATTT 60.322 50.000 4.18 0.00 39.32 2.17
2586 2867 0.811281 GCGCCAAGGCTACTGATTTT 59.189 50.000 9.73 0.00 39.32 1.82
2587 2868 1.468054 GCGCCAAGGCTACTGATTTTG 60.468 52.381 9.73 0.00 39.32 2.44
2588 2869 1.468054 CGCCAAGGCTACTGATTTTGC 60.468 52.381 9.73 0.00 39.32 3.68
2589 2870 1.821136 GCCAAGGCTACTGATTTTGCT 59.179 47.619 3.29 0.00 38.26 3.91
2590 2871 2.416431 GCCAAGGCTACTGATTTTGCTG 60.416 50.000 3.29 0.00 38.26 4.41
2591 2872 2.821969 CCAAGGCTACTGATTTTGCTGT 59.178 45.455 0.00 0.00 0.00 4.40
2592 2873 3.256631 CCAAGGCTACTGATTTTGCTGTT 59.743 43.478 0.00 0.00 0.00 3.16
2593 2874 4.262164 CCAAGGCTACTGATTTTGCTGTTT 60.262 41.667 0.00 0.00 0.00 2.83
2594 2875 4.773323 AGGCTACTGATTTTGCTGTTTC 57.227 40.909 0.00 0.00 0.00 2.78
2595 2876 4.144297 AGGCTACTGATTTTGCTGTTTCA 58.856 39.130 0.00 0.00 0.00 2.69
2596 2877 4.584325 AGGCTACTGATTTTGCTGTTTCAA 59.416 37.500 0.00 0.00 0.00 2.69
2597 2878 4.919754 GGCTACTGATTTTGCTGTTTCAAG 59.080 41.667 0.00 0.00 0.00 3.02
2598 2879 4.919754 GCTACTGATTTTGCTGTTTCAAGG 59.080 41.667 0.00 0.00 0.00 3.61
2599 2880 5.278463 GCTACTGATTTTGCTGTTTCAAGGA 60.278 40.000 0.00 0.00 0.00 3.36
2600 2881 4.936891 ACTGATTTTGCTGTTTCAAGGAC 58.063 39.130 0.00 0.00 0.00 3.85
2601 2882 4.646492 ACTGATTTTGCTGTTTCAAGGACT 59.354 37.500 0.00 0.00 0.00 3.85
2602 2883 5.127682 ACTGATTTTGCTGTTTCAAGGACTT 59.872 36.000 0.00 0.00 0.00 3.01
2603 2884 5.350633 TGATTTTGCTGTTTCAAGGACTTG 58.649 37.500 5.72 5.72 41.71 3.16
2604 2885 5.126869 TGATTTTGCTGTTTCAAGGACTTGA 59.873 36.000 10.52 10.52 46.72 3.02
2613 2894 3.845781 TCAAGGACTTGAGACAAAGCT 57.154 42.857 10.52 0.00 43.90 3.74
2614 2895 3.733337 TCAAGGACTTGAGACAAAGCTC 58.267 45.455 10.52 0.00 43.90 4.09
2615 2896 3.134623 TCAAGGACTTGAGACAAAGCTCA 59.865 43.478 10.52 0.00 43.90 4.26
2674 2955 7.512130 TGATTATGAGTTCATCTGGTTAGCAT 58.488 34.615 0.00 0.00 37.76 3.79
2685 2966 7.671302 TCATCTGGTTAGCATTACTATTCTCC 58.329 38.462 0.00 0.00 0.00 3.71
2700 2981 5.828859 ACTATTCTCCGACAATGCTACTAGT 59.171 40.000 0.00 0.00 0.00 2.57
2704 2985 5.888105 TCTCCGACAATGCTACTAGTAAAC 58.112 41.667 3.76 0.00 0.00 2.01
2733 3014 6.561519 ATCCACCTTGCTGTAGTAAGTAAT 57.438 37.500 8.55 0.00 36.25 1.89
2756 3037 4.916983 TGGCACCAATCTTATGTTATGC 57.083 40.909 0.00 0.00 0.00 3.14
2895 3184 6.010219 AGACCTTTTATGGTGCACAAGTTAT 58.990 36.000 20.43 7.05 41.00 1.89
2896 3185 6.024552 ACCTTTTATGGTGCACAAGTTATG 57.975 37.500 20.43 3.48 39.17 1.90
2902 3191 7.753309 TTATGGTGCACAAGTTATGTTAACT 57.247 32.000 20.43 0.00 41.46 2.24
3108 3397 6.518208 TGGTTTTAATGGTATAACAGCCAC 57.482 37.500 0.00 0.00 37.62 5.01
3133 3422 8.122481 ACCTTTCCTATTATGAATTCAACCCTT 58.878 33.333 13.09 0.00 0.00 3.95
3158 3447 6.485313 TCGCAACCCTGTAGGATTAATTATTG 59.515 38.462 0.00 0.00 39.89 1.90
3310 3599 4.692155 GGCTTGAAAGGATGGAAATTTGTG 59.308 41.667 0.00 0.00 0.00 3.33
3467 3763 2.639347 TGAGAGAAGCAGGGTGATTTGA 59.361 45.455 0.00 0.00 0.00 2.69
3468 3764 3.072915 TGAGAGAAGCAGGGTGATTTGAA 59.927 43.478 0.00 0.00 0.00 2.69
3545 3853 6.694411 ACACGTGATGTAACTCGATTATTACC 59.306 38.462 25.01 0.58 40.88 2.85
3593 3901 3.482156 AGCAATCTGAAGGCATATCGT 57.518 42.857 6.67 0.00 0.00 3.73
3683 3991 5.524281 GCTTACTAAGGTAATCCTGCTTGTC 59.476 44.000 0.00 0.00 44.35 3.18
3750 4058 8.193953 TCTAGTGATGTTATGCCTCATGATAA 57.806 34.615 0.00 0.00 0.00 1.75
3858 4167 4.902443 TTTTTGCAGACGTTTCATACCA 57.098 36.364 0.00 0.00 0.00 3.25
4128 4437 6.959639 ATATTCCGACAGCAATAACCATTT 57.040 33.333 0.00 0.00 0.00 2.32
4409 4718 2.416836 CCGTGCCTCAGATACTCGAAAA 60.417 50.000 0.00 0.00 0.00 2.29
4468 4777 0.396811 ACCTGTGTACCTCCAAGTGC 59.603 55.000 0.00 0.00 0.00 4.40
4541 4852 8.287503 ACTATCAAAAGATAACGGAACAAACAC 58.712 33.333 0.00 0.00 0.00 3.32
4587 4898 8.272889 ACAAAAGAAACTAGAAAGTAGGGTTCT 58.727 33.333 0.00 0.00 38.80 3.01
4588 4899 8.775527 CAAAAGAAACTAGAAAGTAGGGTTCTC 58.224 37.037 0.00 0.00 36.69 2.87
4590 4901 7.234661 AGAAACTAGAAAGTAGGGTTCTCAG 57.765 40.000 0.00 0.00 36.69 3.35
4592 4903 4.679331 ACTAGAAAGTAGGGTTCTCAGCT 58.321 43.478 0.00 0.00 36.69 4.24
4616 4931 1.308216 AGCAATACCCCCTCCTGCT 60.308 57.895 0.00 0.00 38.50 4.24
4704 5020 9.598517 AGCAGAAGAGAGAATTTTATCTTACAG 57.401 33.333 5.90 1.66 32.31 2.74
4755 5071 1.747774 GCAAGTGCACACCCCATTT 59.252 52.632 21.04 0.00 41.59 2.32
4772 5088 4.219288 CCCATTTATAGCATCCAAGAAGCC 59.781 45.833 0.00 0.00 0.00 4.35
4774 5090 3.838244 TTATAGCATCCAAGAAGCCGT 57.162 42.857 0.00 0.00 0.00 5.68
4803 5119 7.010160 TCCAAGTTTTTAGTCCTCATCCATTT 58.990 34.615 0.00 0.00 0.00 2.32
4813 5129 3.528905 TCCTCATCCATTTCTTGGGTCAT 59.471 43.478 0.00 0.00 46.45 3.06
4844 5160 3.372954 GTCTTCCTCATCGTTATCACCG 58.627 50.000 0.00 0.00 0.00 4.94
4849 5165 2.100916 CCTCATCGTTATCACCGGTTCT 59.899 50.000 2.97 0.00 0.00 3.01
4867 5183 4.511527 GTTCTTCCAGCAATCATCAGAGA 58.488 43.478 0.00 0.00 0.00 3.10
4873 5189 2.873472 CAGCAATCATCAGAGAAGCCTC 59.127 50.000 0.00 0.00 39.72 4.70
4887 5203 0.043334 AGCCTCTCCTTGCTCCCTTA 59.957 55.000 0.00 0.00 30.33 2.69
4897 5213 3.825014 CCTTGCTCCCTTATTCCATCATG 59.175 47.826 0.00 0.00 0.00 3.07
4898 5214 4.467769 CTTGCTCCCTTATTCCATCATGT 58.532 43.478 0.00 0.00 0.00 3.21
4946 5262 0.820891 CAGCAGCACCTTGTTCCAGT 60.821 55.000 0.00 0.00 0.00 4.00
4962 5278 1.665679 CCAGTATTGCACGATCACCAC 59.334 52.381 0.00 0.00 0.00 4.16
4973 5289 1.673168 GATCACCACCATTCTGGAGC 58.327 55.000 0.00 0.00 40.96 4.70
4993 5309 2.737252 GCGCTGCCCAATAGTATAGTTC 59.263 50.000 0.00 0.00 0.00 3.01
5019 5336 5.705609 AGGACACAACATACCAAATGAAC 57.294 39.130 0.00 0.00 0.00 3.18
5026 5343 5.156355 CAACATACCAAATGAACTCAGCAC 58.844 41.667 0.00 0.00 0.00 4.40
5190 5507 0.692419 CAGGTCTATCCCCAGCACCT 60.692 60.000 0.00 0.00 38.02 4.00
5196 5513 4.161102 GTCTATCCCCAGCACCTATAGTT 58.839 47.826 0.00 0.00 0.00 2.24
5197 5514 4.593634 GTCTATCCCCAGCACCTATAGTTT 59.406 45.833 0.00 0.00 0.00 2.66
5198 5515 5.071923 GTCTATCCCCAGCACCTATAGTTTT 59.928 44.000 0.00 0.00 0.00 2.43
5199 5516 6.269307 GTCTATCCCCAGCACCTATAGTTTTA 59.731 42.308 0.00 0.00 0.00 1.52
5200 5517 4.765813 TCCCCAGCACCTATAGTTTTAC 57.234 45.455 0.00 0.00 0.00 2.01
5201 5518 4.368067 TCCCCAGCACCTATAGTTTTACT 58.632 43.478 0.00 0.00 0.00 2.24
5202 5519 4.407945 TCCCCAGCACCTATAGTTTTACTC 59.592 45.833 0.00 0.00 0.00 2.59
5203 5520 4.163458 CCCCAGCACCTATAGTTTTACTCA 59.837 45.833 0.00 0.00 0.00 3.41
5204 5521 5.116882 CCCAGCACCTATAGTTTTACTCAC 58.883 45.833 0.00 0.00 0.00 3.51
5205 5522 5.338056 CCCAGCACCTATAGTTTTACTCACA 60.338 44.000 0.00 0.00 0.00 3.58
5206 5523 6.170506 CCAGCACCTATAGTTTTACTCACAA 58.829 40.000 0.00 0.00 0.00 3.33
5207 5524 6.823689 CCAGCACCTATAGTTTTACTCACAAT 59.176 38.462 0.00 0.00 0.00 2.71
5208 5525 7.985184 CCAGCACCTATAGTTTTACTCACAATA 59.015 37.037 0.00 0.00 0.00 1.90
5209 5526 8.818057 CAGCACCTATAGTTTTACTCACAATAC 58.182 37.037 0.00 0.00 0.00 1.89
5210 5527 8.759782 AGCACCTATAGTTTTACTCACAATACT 58.240 33.333 0.00 0.00 0.00 2.12
5211 5528 9.032420 GCACCTATAGTTTTACTCACAATACTC 57.968 37.037 0.00 0.00 0.00 2.59
5212 5529 9.530633 CACCTATAGTTTTACTCACAATACTCC 57.469 37.037 0.00 0.00 0.00 3.85
5213 5530 9.263446 ACCTATAGTTTTACTCACAATACTCCA 57.737 33.333 0.00 0.00 0.00 3.86
5214 5531 9.751542 CCTATAGTTTTACTCACAATACTCCAG 57.248 37.037 0.00 0.00 0.00 3.86
5217 5534 7.062749 AGTTTTACTCACAATACTCCAGACA 57.937 36.000 0.00 0.00 0.00 3.41
5218 5535 7.680730 AGTTTTACTCACAATACTCCAGACAT 58.319 34.615 0.00 0.00 0.00 3.06
5219 5536 8.812972 AGTTTTACTCACAATACTCCAGACATA 58.187 33.333 0.00 0.00 0.00 2.29
5220 5537 9.601217 GTTTTACTCACAATACTCCAGACATAT 57.399 33.333 0.00 0.00 0.00 1.78
5223 5540 9.599866 TTACTCACAATACTCCAGACATATTTG 57.400 33.333 0.00 0.00 0.00 2.32
5224 5541 7.050377 ACTCACAATACTCCAGACATATTTGG 58.950 38.462 0.00 0.00 35.74 3.28
5225 5542 5.822519 TCACAATACTCCAGACATATTTGGC 59.177 40.000 0.00 0.00 34.38 4.52
5226 5543 5.589855 CACAATACTCCAGACATATTTGGCA 59.410 40.000 0.00 0.00 34.38 4.92
5227 5544 5.824624 ACAATACTCCAGACATATTTGGCAG 59.175 40.000 0.00 0.00 34.38 4.85
5228 5545 3.287867 ACTCCAGACATATTTGGCAGG 57.712 47.619 0.00 0.00 38.89 4.85
5229 5546 2.578021 ACTCCAGACATATTTGGCAGGT 59.422 45.455 0.43 0.00 38.65 4.00
5230 5547 2.947652 CTCCAGACATATTTGGCAGGTG 59.052 50.000 0.43 0.00 38.65 4.00
5231 5548 2.575735 TCCAGACATATTTGGCAGGTGA 59.424 45.455 0.43 0.00 38.65 4.02
5232 5549 3.202818 TCCAGACATATTTGGCAGGTGAT 59.797 43.478 0.43 0.00 38.65 3.06
5233 5550 3.956199 CCAGACATATTTGGCAGGTGATT 59.044 43.478 0.00 0.00 32.89 2.57
5234 5551 4.403432 CCAGACATATTTGGCAGGTGATTT 59.597 41.667 0.00 0.00 32.89 2.17
5235 5552 5.593909 CCAGACATATTTGGCAGGTGATTTA 59.406 40.000 0.00 0.00 32.89 1.40
5236 5553 6.266103 CCAGACATATTTGGCAGGTGATTTAT 59.734 38.462 0.00 0.00 32.89 1.40
5237 5554 7.143340 CAGACATATTTGGCAGGTGATTTATG 58.857 38.462 0.00 0.00 30.96 1.90
5238 5555 6.266103 AGACATATTTGGCAGGTGATTTATGG 59.734 38.462 0.00 0.00 30.96 2.74
5239 5556 5.898972 ACATATTTGGCAGGTGATTTATGGT 59.101 36.000 0.00 0.00 0.00 3.55
5240 5557 6.383726 ACATATTTGGCAGGTGATTTATGGTT 59.616 34.615 0.00 0.00 0.00 3.67
5241 5558 5.760484 ATTTGGCAGGTGATTTATGGTTT 57.240 34.783 0.00 0.00 0.00 3.27
5242 5559 4.799564 TTGGCAGGTGATTTATGGTTTC 57.200 40.909 0.00 0.00 0.00 2.78
5243 5560 3.772387 TGGCAGGTGATTTATGGTTTCA 58.228 40.909 0.00 0.00 0.00 2.69
5244 5561 4.352009 TGGCAGGTGATTTATGGTTTCAT 58.648 39.130 0.00 0.00 37.40 2.57
5245 5562 4.776837 TGGCAGGTGATTTATGGTTTCATT 59.223 37.500 0.00 0.00 34.96 2.57
5246 5563 5.954752 TGGCAGGTGATTTATGGTTTCATTA 59.045 36.000 0.00 0.00 34.96 1.90
5247 5564 6.610830 TGGCAGGTGATTTATGGTTTCATTAT 59.389 34.615 0.00 0.00 34.96 1.28
5248 5565 7.147976 GGCAGGTGATTTATGGTTTCATTATC 58.852 38.462 0.00 0.00 34.96 1.75
5249 5566 7.201902 GGCAGGTGATTTATGGTTTCATTATCA 60.202 37.037 0.00 0.00 34.14 2.15
5250 5567 8.362639 GCAGGTGATTTATGGTTTCATTATCAT 58.637 33.333 0.00 0.00 36.52 2.45
5251 5568 9.903682 CAGGTGATTTATGGTTTCATTATCATC 57.096 33.333 0.00 0.00 36.52 2.92
5252 5569 8.786898 AGGTGATTTATGGTTTCATTATCATCG 58.213 33.333 0.00 0.00 38.26 3.84
5253 5570 7.538678 GGTGATTTATGGTTTCATTATCATCGC 59.461 37.037 0.00 0.00 36.52 4.58
5254 5571 8.075574 GTGATTTATGGTTTCATTATCATCGCA 58.924 33.333 0.00 0.00 36.52 5.10
5255 5572 8.291740 TGATTTATGGTTTCATTATCATCGCAG 58.708 33.333 0.00 0.00 32.88 5.18
5256 5573 7.800155 TTTATGGTTTCATTATCATCGCAGA 57.200 32.000 0.00 0.00 36.33 4.26
5257 5574 7.800155 TTATGGTTTCATTATCATCGCAGAA 57.200 32.000 0.00 0.00 35.76 3.02
5258 5575 5.739752 TGGTTTCATTATCATCGCAGAAG 57.260 39.130 0.00 0.00 43.58 2.85
5259 5576 4.035558 TGGTTTCATTATCATCGCAGAAGC 59.964 41.667 0.00 0.00 43.58 3.86
5270 5587 1.576421 GCAGAAGCGACACAAAGGG 59.424 57.895 0.00 0.00 0.00 3.95
5271 5588 1.166531 GCAGAAGCGACACAAAGGGT 61.167 55.000 0.00 0.00 0.00 4.34
5272 5589 0.868406 CAGAAGCGACACAAAGGGTC 59.132 55.000 0.00 0.00 0.00 4.46
5273 5590 0.250338 AGAAGCGACACAAAGGGTCC 60.250 55.000 0.00 0.00 31.55 4.46
5274 5591 1.228154 AAGCGACACAAAGGGTCCC 60.228 57.895 0.00 0.00 31.55 4.46
5275 5592 2.671963 GCGACACAAAGGGTCCCC 60.672 66.667 3.51 0.00 31.55 4.81
5276 5593 2.033602 CGACACAAAGGGTCCCCC 59.966 66.667 3.51 0.00 45.90 5.40
5285 5602 4.392166 GGGTCCCCCGCCCATTTT 62.392 66.667 0.00 0.00 45.40 1.82
5286 5603 2.284331 GGTCCCCCGCCCATTTTT 60.284 61.111 0.00 0.00 0.00 1.94
5287 5604 2.355986 GGTCCCCCGCCCATTTTTC 61.356 63.158 0.00 0.00 0.00 2.29
5288 5605 1.304962 GTCCCCCGCCCATTTTTCT 60.305 57.895 0.00 0.00 0.00 2.52
5289 5606 0.902984 GTCCCCCGCCCATTTTTCTT 60.903 55.000 0.00 0.00 0.00 2.52
5290 5607 0.178918 TCCCCCGCCCATTTTTCTTT 60.179 50.000 0.00 0.00 0.00 2.52
5291 5608 1.077334 TCCCCCGCCCATTTTTCTTTA 59.923 47.619 0.00 0.00 0.00 1.85
5292 5609 1.903183 CCCCCGCCCATTTTTCTTTAA 59.097 47.619 0.00 0.00 0.00 1.52
5301 5618 6.545508 GCCCATTTTTCTTTAATCATGTTGC 58.454 36.000 0.00 0.00 0.00 4.17
5302 5619 6.672836 GCCCATTTTTCTTTAATCATGTTGCG 60.673 38.462 0.00 0.00 0.00 4.85
5335 5652 2.336554 GCATTGTGCCATATAAGCCG 57.663 50.000 0.00 0.00 37.42 5.52
5350 5667 7.440856 CCATATAAGCCGCAACCAAAATTTAAT 59.559 33.333 0.00 0.00 0.00 1.40
5375 5694 2.602257 AAGGCAGTTTTGCTTTCCAC 57.398 45.000 0.00 0.00 45.33 4.02
5410 5729 4.020485 TGATCTATCATGACCAGCATCAGG 60.020 45.833 0.00 0.00 34.15 3.86
5421 5740 3.461085 ACCAGCATCAGGAAGGTGATTAT 59.539 43.478 5.39 0.00 34.81 1.28
5423 5742 4.999950 CCAGCATCAGGAAGGTGATTATAC 59.000 45.833 5.39 0.00 34.81 1.47
5424 5743 4.687948 CAGCATCAGGAAGGTGATTATACG 59.312 45.833 0.00 0.00 34.81 3.06
5425 5744 4.345257 AGCATCAGGAAGGTGATTATACGT 59.655 41.667 0.00 0.00 34.81 3.57
5426 5745 5.057149 GCATCAGGAAGGTGATTATACGTT 58.943 41.667 0.00 0.00 34.81 3.99
5427 5746 5.527582 GCATCAGGAAGGTGATTATACGTTT 59.472 40.000 0.00 0.00 34.81 3.60
5429 5748 6.288941 TCAGGAAGGTGATTATACGTTTGA 57.711 37.500 0.00 0.00 0.00 2.69
5430 5749 6.103997 TCAGGAAGGTGATTATACGTTTGAC 58.896 40.000 0.00 0.00 0.00 3.18
5432 5751 6.594159 CAGGAAGGTGATTATACGTTTGACTT 59.406 38.462 0.00 0.00 0.00 3.01
5435 5754 8.385858 GGAAGGTGATTATACGTTTGACTTAAC 58.614 37.037 0.00 0.00 0.00 2.01
5436 5755 8.836268 AAGGTGATTATACGTTTGACTTAACA 57.164 30.769 0.00 0.00 0.00 2.41
5437 5756 8.475331 AGGTGATTATACGTTTGACTTAACAG 57.525 34.615 0.00 0.00 0.00 3.16
5438 5757 8.092687 AGGTGATTATACGTTTGACTTAACAGT 58.907 33.333 0.00 0.00 35.17 3.55
5439 5758 8.166706 GGTGATTATACGTTTGACTTAACAGTG 58.833 37.037 0.00 0.00 31.22 3.66
5440 5759 8.918658 GTGATTATACGTTTGACTTAACAGTGA 58.081 33.333 0.00 0.00 31.22 3.41
5441 5760 9.478768 TGATTATACGTTTGACTTAACAGTGAA 57.521 29.630 0.00 0.00 31.22 3.18
5446 5765 7.316544 ACGTTTGACTTAACAGTGAATTTCT 57.683 32.000 0.00 0.00 31.22 2.52
5447 5766 7.758495 ACGTTTGACTTAACAGTGAATTTCTT 58.242 30.769 0.00 0.00 31.22 2.52
5448 5767 8.241367 ACGTTTGACTTAACAGTGAATTTCTTT 58.759 29.630 0.00 0.00 31.22 2.52
5479 5842 9.881529 TGTTTAACTAAATGTCGTATTCCAAAC 57.118 29.630 0.00 0.00 0.00 2.93
5480 5843 9.881529 GTTTAACTAAATGTCGTATTCCAAACA 57.118 29.630 0.00 0.00 0.00 2.83
5482 5845 7.739498 AACTAAATGTCGTATTCCAAACAGT 57.261 32.000 0.00 0.00 0.00 3.55
5483 5846 7.129109 ACTAAATGTCGTATTCCAAACAGTG 57.871 36.000 0.00 0.00 0.00 3.66
5546 5912 7.861629 ACATAGTTGGAACATATCAGGAAAGA 58.138 34.615 0.00 0.00 39.30 2.52
5593 5959 2.586425 CATTTGTGTCCCCAACAGTCT 58.414 47.619 0.00 0.00 38.97 3.24
5610 5976 3.803778 CAGTCTGTTTGTTTTCCATTGCC 59.196 43.478 0.00 0.00 0.00 4.52
5611 5977 3.450457 AGTCTGTTTGTTTTCCATTGCCA 59.550 39.130 0.00 0.00 0.00 4.92
5612 5978 4.081198 AGTCTGTTTGTTTTCCATTGCCAA 60.081 37.500 0.00 0.00 0.00 4.52
5613 5979 4.033932 GTCTGTTTGTTTTCCATTGCCAAC 59.966 41.667 0.00 0.00 0.00 3.77
5614 5980 3.274288 TGTTTGTTTTCCATTGCCAACC 58.726 40.909 0.00 0.00 0.00 3.77
5615 5981 2.616376 GTTTGTTTTCCATTGCCAACCC 59.384 45.455 0.00 0.00 0.00 4.11
5616 5982 0.761802 TGTTTTCCATTGCCAACCCC 59.238 50.000 0.00 0.00 0.00 4.95
5622 5988 1.536174 CATTGCCAACCCCCAACCT 60.536 57.895 0.00 0.00 0.00 3.50
5686 6052 1.838112 TCAGCCCAACATGGTGAATC 58.162 50.000 13.74 0.21 37.30 2.52
5708 6074 8.498054 AATCATTCACTGTACTATGAAGTTGG 57.502 34.615 14.84 7.37 38.19 3.77
5757 6123 2.209838 TTTCTCGCTATCTTCTGCCG 57.790 50.000 0.00 0.00 0.00 5.69
5793 6159 2.566833 TCAAGATTCCACCACCACTG 57.433 50.000 0.00 0.00 0.00 3.66
5862 6229 0.593128 CCTTTCTTCTTGGGTGTGCG 59.407 55.000 0.00 0.00 0.00 5.34
5919 6289 5.708736 TTTTTACTGGATCCTGCCTGATA 57.291 39.130 17.94 0.56 0.00 2.15
5923 6293 3.528976 ACTGGATCCTGCCTGATATGAT 58.471 45.455 17.94 0.00 0.00 2.45
5925 6295 5.096521 ACTGGATCCTGCCTGATATGATAA 58.903 41.667 17.94 0.00 0.00 1.75
6340 6724 2.360483 TCCGTGTAACAACGTTCCACTA 59.640 45.455 0.00 0.00 42.01 2.74
6352 6736 8.248117 ACAACGTTCCACTATTATTGTACTTC 57.752 34.615 0.00 0.00 0.00 3.01
6374 6784 2.165437 TGCTTTTACATTTGCCGGGATC 59.835 45.455 2.18 0.00 0.00 3.36
6474 6884 3.849911 AGCGTCGGTATGGAATATGATG 58.150 45.455 0.00 0.00 0.00 3.07
6477 6887 4.174009 CGTCGGTATGGAATATGATGGTC 58.826 47.826 0.00 0.00 0.00 4.02
6484 6894 2.146342 GGAATATGATGGTCGTGCCTG 58.854 52.381 1.06 0.00 38.35 4.85
6520 6930 4.202357 TGTGAGCAACTTGTATCTCCTGTT 60.202 41.667 0.00 0.00 0.00 3.16
6651 7061 0.463654 TCGCATGCACATACTTCCCC 60.464 55.000 19.57 0.00 0.00 4.81
6790 7208 6.658391 AGGAAAGTCCATTTTTCATCTCTCAG 59.342 38.462 0.00 0.00 39.61 3.35
6857 7275 2.094390 TCTTGATCCCGTGTAGAAACCG 60.094 50.000 0.00 0.00 0.00 4.44
6863 7281 3.884895 TCCCGTGTAGAAACCGTCTATA 58.115 45.455 0.00 0.00 41.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 129 0.606401 ACCAACGGTGAGCCATCTTG 60.606 55.000 0.00 0.00 32.98 3.02
124 131 3.483587 ACCAACGGTGAGCCATCT 58.516 55.556 0.00 0.00 32.98 2.90
197 208 1.238439 GCTTTAGCTGCAACTGGACA 58.762 50.000 1.02 0.00 38.21 4.02
267 312 1.692042 CTCATCCACCCCTCTGCCT 60.692 63.158 0.00 0.00 0.00 4.75
423 578 2.046023 CCCTGCCTGTTCGCATCA 60.046 61.111 0.00 0.00 38.30 3.07
536 703 7.064728 CCCACCAAAGAAAACGTTTTAAAATGA 59.935 33.333 25.26 0.00 0.00 2.57
537 704 7.064728 TCCCACCAAAGAAAACGTTTTAAAATG 59.935 33.333 25.26 19.46 0.00 2.32
543 710 3.512329 AGTCCCACCAAAGAAAACGTTTT 59.488 39.130 25.46 25.46 0.00 2.43
590 757 6.128472 CCAAAAGCTACCAAAAAGCATGATTC 60.128 38.462 0.00 0.00 42.62 2.52
675 842 2.909006 TCAGTCTGGAAAATCTGGAGCT 59.091 45.455 0.00 0.00 0.00 4.09
704 871 5.106515 GCCCAGTTCTTTTGAGTAGATTGTC 60.107 44.000 0.00 0.00 0.00 3.18
712 879 0.182775 ACGGCCCAGTTCTTTTGAGT 59.817 50.000 0.00 0.00 0.00 3.41
735 902 5.867903 TTTGTTCCAATGGAATCAAGTGT 57.132 34.783 18.63 0.00 44.04 3.55
736 903 5.870978 GGATTTGTTCCAATGGAATCAAGTG 59.129 40.000 18.63 0.00 44.04 3.16
737 904 6.041423 GGATTTGTTCCAATGGAATCAAGT 57.959 37.500 18.63 18.12 44.04 3.16
767 934 7.053316 TGTTGTTTGATTCACAGGATTGAAT 57.947 32.000 0.00 0.00 46.73 2.57
768 935 6.462552 TGTTGTTTGATTCACAGGATTGAA 57.537 33.333 0.00 0.00 39.79 2.69
769 936 6.462552 TTGTTGTTTGATTCACAGGATTGA 57.537 33.333 0.00 0.00 0.00 2.57
770 937 7.225145 ACATTTGTTGTTTGATTCACAGGATTG 59.775 33.333 0.00 0.00 33.74 2.67
771 938 7.274447 ACATTTGTTGTTTGATTCACAGGATT 58.726 30.769 0.00 0.00 33.74 3.01
772 939 6.819284 ACATTTGTTGTTTGATTCACAGGAT 58.181 32.000 0.00 0.00 33.74 3.24
773 940 6.219417 ACATTTGTTGTTTGATTCACAGGA 57.781 33.333 0.00 0.00 33.74 3.86
774 941 7.920151 TCTTACATTTGTTGTTTGATTCACAGG 59.080 33.333 0.00 0.00 39.87 4.00
775 942 8.854979 TCTTACATTTGTTGTTTGATTCACAG 57.145 30.769 0.00 0.00 39.87 3.66
776 943 9.645059 TTTCTTACATTTGTTGTTTGATTCACA 57.355 25.926 0.00 0.00 39.87 3.58
820 987 9.498039 AGGAATTCTATGAAATTTTTGGAGGAT 57.502 29.630 5.23 0.00 0.00 3.24
821 988 8.899887 AGGAATTCTATGAAATTTTTGGAGGA 57.100 30.769 5.23 0.00 0.00 3.71
822 989 9.948964 AAAGGAATTCTATGAAATTTTTGGAGG 57.051 29.630 5.23 0.00 0.00 4.30
846 1013 7.410174 TCTATTTAGGGCTCCTTTGATTCAAA 58.590 34.615 11.19 11.19 34.61 2.69
847 1014 6.969043 TCTATTTAGGGCTCCTTTGATTCAA 58.031 36.000 0.00 0.00 34.61 2.69
848 1015 6.386927 TCTCTATTTAGGGCTCCTTTGATTCA 59.613 38.462 0.00 0.00 34.61 2.57
849 1016 6.831976 TCTCTATTTAGGGCTCCTTTGATTC 58.168 40.000 0.00 0.00 34.61 2.52
850 1017 6.831664 TCTCTATTTAGGGCTCCTTTGATT 57.168 37.500 0.00 0.00 34.61 2.57
851 1018 8.692682 ATATCTCTATTTAGGGCTCCTTTGAT 57.307 34.615 0.00 0.00 34.61 2.57
852 1019 9.036980 GTATATCTCTATTTAGGGCTCCTTTGA 57.963 37.037 0.00 0.00 34.61 2.69
853 1020 9.041354 AGTATATCTCTATTTAGGGCTCCTTTG 57.959 37.037 0.00 0.00 34.61 2.77
855 1022 9.930158 CTAGTATATCTCTATTTAGGGCTCCTT 57.070 37.037 0.00 0.00 34.61 3.36
856 1023 9.075845 ACTAGTATATCTCTATTTAGGGCTCCT 57.924 37.037 0.00 0.00 37.71 3.69
857 1024 9.703677 AACTAGTATATCTCTATTTAGGGCTCC 57.296 37.037 0.00 0.00 0.00 4.70
874 1041 8.689972 GCGGGCTATAAGGATTAAACTAGTATA 58.310 37.037 0.00 0.00 32.17 1.47
875 1042 7.399478 AGCGGGCTATAAGGATTAAACTAGTAT 59.601 37.037 0.00 0.00 32.17 2.12
876 1043 6.723052 AGCGGGCTATAAGGATTAAACTAGTA 59.277 38.462 0.00 0.00 32.17 1.82
877 1044 5.543020 AGCGGGCTATAAGGATTAAACTAGT 59.457 40.000 0.00 0.00 32.17 2.57
878 1045 5.869888 CAGCGGGCTATAAGGATTAAACTAG 59.130 44.000 0.00 0.00 32.17 2.57
879 1046 5.541101 TCAGCGGGCTATAAGGATTAAACTA 59.459 40.000 0.00 0.00 32.17 2.24
880 1047 4.347000 TCAGCGGGCTATAAGGATTAAACT 59.653 41.667 0.00 0.00 32.17 2.66
881 1048 4.451435 GTCAGCGGGCTATAAGGATTAAAC 59.549 45.833 0.00 0.00 32.17 2.01
882 1049 4.347000 AGTCAGCGGGCTATAAGGATTAAA 59.653 41.667 0.00 0.00 32.17 1.52
883 1050 3.901844 AGTCAGCGGGCTATAAGGATTAA 59.098 43.478 0.00 0.00 32.17 1.40
884 1051 3.507411 AGTCAGCGGGCTATAAGGATTA 58.493 45.455 0.00 0.00 33.48 1.75
885 1052 2.300437 GAGTCAGCGGGCTATAAGGATT 59.700 50.000 0.00 0.00 0.00 3.01
886 1053 1.896465 GAGTCAGCGGGCTATAAGGAT 59.104 52.381 0.00 0.00 0.00 3.24
887 1054 1.329256 GAGTCAGCGGGCTATAAGGA 58.671 55.000 0.00 0.00 0.00 3.36
888 1055 1.000283 CTGAGTCAGCGGGCTATAAGG 60.000 57.143 7.33 0.00 0.00 2.69
889 1056 2.430546 CTGAGTCAGCGGGCTATAAG 57.569 55.000 7.33 0.00 0.00 1.73
900 1067 8.621532 AGAGAAGTATAATAGAGCTGAGTCAG 57.378 38.462 16.21 16.21 34.12 3.51
904 1071 9.787532 GCATTAGAGAAGTATAATAGAGCTGAG 57.212 37.037 0.00 0.00 0.00 3.35
905 1072 8.744652 GGCATTAGAGAAGTATAATAGAGCTGA 58.255 37.037 0.00 0.00 0.00 4.26
906 1073 7.978975 GGGCATTAGAGAAGTATAATAGAGCTG 59.021 40.741 0.00 0.00 0.00 4.24
907 1074 7.125053 GGGGCATTAGAGAAGTATAATAGAGCT 59.875 40.741 0.00 0.00 0.00 4.09
908 1075 7.269316 GGGGCATTAGAGAAGTATAATAGAGC 58.731 42.308 0.00 0.00 0.00 4.09
909 1076 7.787028 GGGGGCATTAGAGAAGTATAATAGAG 58.213 42.308 0.00 0.00 0.00 2.43
910 1077 7.735326 GGGGGCATTAGAGAAGTATAATAGA 57.265 40.000 0.00 0.00 0.00 1.98
1058 1245 4.729918 GCAGGCCACCAGACCCAG 62.730 72.222 5.01 0.00 0.00 4.45
1299 1486 2.125229 TCCTCGTCCTCGTCCTCG 60.125 66.667 0.00 0.00 38.33 4.63
1300 1487 2.474612 GCTCCTCGTCCTCGTCCTC 61.475 68.421 0.00 0.00 38.33 3.71
1301 1488 2.438795 GCTCCTCGTCCTCGTCCT 60.439 66.667 0.00 0.00 38.33 3.85
1302 1489 3.878519 CGCTCCTCGTCCTCGTCC 61.879 72.222 0.00 0.00 38.33 4.79
1303 1490 4.539881 GCGCTCCTCGTCCTCGTC 62.540 72.222 0.00 0.00 41.07 4.20
1412 1599 1.494824 ACACGAACGGCTAACTTCAC 58.505 50.000 0.00 0.00 0.00 3.18
1414 1601 2.664916 TGTACACGAACGGCTAACTTC 58.335 47.619 0.00 0.00 0.00 3.01
1423 1610 7.283633 ACGTATACTGTATATGTACACGAACG 58.716 38.462 24.22 16.68 41.52 3.95
1484 1739 5.909610 GCAAATCGAGGTATAGTGCATTTTC 59.090 40.000 0.00 0.00 0.00 2.29
1514 1769 1.674322 GTACACCTGCGCCCAACAT 60.674 57.895 4.18 0.00 0.00 2.71
1619 1874 6.373779 CGCAATAGGCTTTTATACCTTGATG 58.626 40.000 0.00 0.00 41.67 3.07
1629 1884 2.077627 TCAACGCGCAATAGGCTTTTA 58.922 42.857 5.73 0.00 41.67 1.52
1651 1906 5.851720 AGTACAGCGCTATAGTACTACTGA 58.148 41.667 28.01 0.00 44.68 3.41
1691 1949 4.017126 GGAAAGGCCAAAAGTACAGCTAT 58.983 43.478 5.01 0.00 36.34 2.97
1752 2013 4.142687 CGCCGTCCTAAAATGTCTCAAATT 60.143 41.667 0.00 0.00 0.00 1.82
1753 2014 3.374058 CGCCGTCCTAAAATGTCTCAAAT 59.626 43.478 0.00 0.00 0.00 2.32
1754 2015 2.739913 CGCCGTCCTAAAATGTCTCAAA 59.260 45.455 0.00 0.00 0.00 2.69
1755 2016 2.028839 TCGCCGTCCTAAAATGTCTCAA 60.029 45.455 0.00 0.00 0.00 3.02
1767 2028 0.813184 TTAATCGAGTTCGCCGTCCT 59.187 50.000 0.00 0.00 39.60 3.85
1769 2030 2.184385 TCTTAATCGAGTTCGCCGTC 57.816 50.000 0.00 0.00 39.60 4.79
1822 2083 9.906660 TCATTTTGCTTCGTATTTAGACATTTT 57.093 25.926 0.00 0.00 0.00 1.82
1823 2084 9.559958 CTCATTTTGCTTCGTATTTAGACATTT 57.440 29.630 0.00 0.00 0.00 2.32
1825 2086 8.177663 CACTCATTTTGCTTCGTATTTAGACAT 58.822 33.333 0.00 0.00 0.00 3.06
1826 2087 7.386573 TCACTCATTTTGCTTCGTATTTAGACA 59.613 33.333 0.00 0.00 0.00 3.41
1827 2088 7.739295 TCACTCATTTTGCTTCGTATTTAGAC 58.261 34.615 0.00 0.00 0.00 2.59
1828 2089 7.899178 TCACTCATTTTGCTTCGTATTTAGA 57.101 32.000 0.00 0.00 0.00 2.10
1830 2091 8.946085 AGATTCACTCATTTTGCTTCGTATTTA 58.054 29.630 0.00 0.00 0.00 1.40
1831 2092 7.820648 AGATTCACTCATTTTGCTTCGTATTT 58.179 30.769 0.00 0.00 0.00 1.40
1832 2093 7.383102 AGATTCACTCATTTTGCTTCGTATT 57.617 32.000 0.00 0.00 0.00 1.89
1834 2095 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
1836 2097 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
1877 2138 8.229253 TCACTACAAACTACATACGGATGTAT 57.771 34.615 20.64 8.38 45.42 2.29
1880 2141 7.821595 TTTCACTACAAACTACATACGGATG 57.178 36.000 5.94 5.94 39.16 3.51
1881 2142 8.475639 AGATTTCACTACAAACTACATACGGAT 58.524 33.333 0.00 0.00 0.00 4.18
1882 2143 7.833786 AGATTTCACTACAAACTACATACGGA 58.166 34.615 0.00 0.00 0.00 4.69
1884 2145 8.912787 AGAGATTTCACTACAAACTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
1910 2171 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1911 2172 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1912 2173 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1913 2174 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1914 2175 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1915 2176 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1916 2177 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1917 2178 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1918 2179 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
1919 2180 9.471702 CTAATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
1920 2181 7.954620 ACTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
1921 2182 7.300658 ACTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
1922 2183 6.141790 ACTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
1923 2184 5.522641 ACTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
1924 2185 5.134725 ACTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
1925 2186 4.803329 ACTAATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
1926 2187 3.684408 ACTAATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
1927 2188 4.161001 TCAAACTAATACTCCCTCCGTTCC 59.839 45.833 0.00 0.00 0.00 3.62
1928 2189 5.105432 ACTCAAACTAATACTCCCTCCGTTC 60.105 44.000 0.00 0.00 0.00 3.95
1929 2190 4.776308 ACTCAAACTAATACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
1930 2191 4.351127 ACTCAAACTAATACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
1931 2192 5.127356 AGAACTCAAACTAATACTCCCTCCG 59.873 44.000 0.00 0.00 0.00 4.63
1932 2193 6.547930 AGAACTCAAACTAATACTCCCTCC 57.452 41.667 0.00 0.00 0.00 4.30
1933 2194 8.095169 TCAAAGAACTCAAACTAATACTCCCTC 58.905 37.037 0.00 0.00 0.00 4.30
1934 2195 7.974504 TCAAAGAACTCAAACTAATACTCCCT 58.025 34.615 0.00 0.00 0.00 4.20
1935 2196 8.794335 ATCAAAGAACTCAAACTAATACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
1937 2198 9.959775 CGAATCAAAGAACTCAAACTAATACTC 57.040 33.333 0.00 0.00 0.00 2.59
1938 2199 8.936864 CCGAATCAAAGAACTCAAACTAATACT 58.063 33.333 0.00 0.00 0.00 2.12
1939 2200 8.718734 ACCGAATCAAAGAACTCAAACTAATAC 58.281 33.333 0.00 0.00 0.00 1.89
1969 2230 3.505680 AGCCAACGAGCAAAATCAATACA 59.494 39.130 0.00 0.00 34.23 2.29
1973 2234 2.100584 ACAAGCCAACGAGCAAAATCAA 59.899 40.909 0.00 0.00 34.23 2.57
1984 2245 0.179140 AAGCACACAACAAGCCAACG 60.179 50.000 0.00 0.00 0.00 4.10
2184 2445 0.537188 TTCTCATGAGGAAGTCGGGC 59.463 55.000 22.42 0.00 0.00 6.13
2218 2479 4.323417 AGAGCAATTTGTGGATTACGTGA 58.677 39.130 0.00 0.00 0.00 4.35
2262 2523 2.858745 GACTGTTTTCCAGGCTTACCA 58.141 47.619 0.00 0.00 46.59 3.25
2277 2538 3.326880 ACGGAGGGAGTAAATTTGACTGT 59.673 43.478 0.00 0.00 0.00 3.55
2314 2575 8.910944 AGTTTGACTTAGGTCGAAGCTAATATA 58.089 33.333 7.87 0.00 43.93 0.86
2325 2586 6.259387 ACCTTTACAAAGTTTGACTTAGGTCG 59.741 38.462 22.23 3.15 37.47 4.79
2429 2710 9.559732 TCCACAGTACCAAATCAATATCATTAG 57.440 33.333 0.00 0.00 0.00 1.73
2435 2716 7.345691 TGACATCCACAGTACCAAATCAATAT 58.654 34.615 0.00 0.00 0.00 1.28
2440 2721 7.624360 TTATTGACATCCACAGTACCAAATC 57.376 36.000 0.00 0.00 0.00 2.17
2488 2769 8.736751 TTTGTCTCAAGTCAAACTTTGTAAAC 57.263 30.769 1.44 0.00 36.03 2.01
2523 2804 0.906282 CCATCCTGGCTGCCCTTTTT 60.906 55.000 17.53 0.00 0.00 1.94
2524 2805 1.305549 CCATCCTGGCTGCCCTTTT 60.306 57.895 17.53 0.00 0.00 2.27
2525 2806 2.361771 CCATCCTGGCTGCCCTTT 59.638 61.111 17.53 0.00 0.00 3.11
2526 2807 2.943265 ACCATCCTGGCTGCCCTT 60.943 61.111 17.53 0.00 42.67 3.95
2527 2808 3.415087 GACCATCCTGGCTGCCCT 61.415 66.667 17.53 0.00 42.67 5.19
2528 2809 3.731728 TGACCATCCTGGCTGCCC 61.732 66.667 17.53 0.00 42.67 5.36
2529 2810 2.439156 GTGACCATCCTGGCTGCC 60.439 66.667 12.87 12.87 42.67 4.85
2530 2811 1.303561 TTGTGACCATCCTGGCTGC 60.304 57.895 0.00 0.00 42.67 5.25
2531 2812 0.679002 CCTTGTGACCATCCTGGCTG 60.679 60.000 0.00 0.00 42.67 4.85
2532 2813 1.687612 CCTTGTGACCATCCTGGCT 59.312 57.895 0.00 0.00 42.67 4.75
2533 2814 2.048603 GCCTTGTGACCATCCTGGC 61.049 63.158 0.00 0.00 42.67 4.85
2534 2815 0.679002 CTGCCTTGTGACCATCCTGG 60.679 60.000 0.00 0.00 45.02 4.45
2535 2816 1.310933 GCTGCCTTGTGACCATCCTG 61.311 60.000 0.00 0.00 0.00 3.86
2536 2817 1.001641 GCTGCCTTGTGACCATCCT 60.002 57.895 0.00 0.00 0.00 3.24
2537 2818 0.895100 TTGCTGCCTTGTGACCATCC 60.895 55.000 0.00 0.00 0.00 3.51
2538 2819 0.242017 GTTGCTGCCTTGTGACCATC 59.758 55.000 0.00 0.00 0.00 3.51
2539 2820 0.178981 AGTTGCTGCCTTGTGACCAT 60.179 50.000 0.00 0.00 0.00 3.55
2540 2821 0.395586 AAGTTGCTGCCTTGTGACCA 60.396 50.000 0.00 0.00 0.00 4.02
2541 2822 0.746659 AAAGTTGCTGCCTTGTGACC 59.253 50.000 0.00 0.00 0.00 4.02
2542 2823 2.287608 GGTAAAGTTGCTGCCTTGTGAC 60.288 50.000 0.00 0.00 0.00 3.67
2543 2824 1.953686 GGTAAAGTTGCTGCCTTGTGA 59.046 47.619 0.00 0.00 0.00 3.58
2544 2825 1.680735 TGGTAAAGTTGCTGCCTTGTG 59.319 47.619 0.00 0.00 0.00 3.33
2545 2826 1.681264 GTGGTAAAGTTGCTGCCTTGT 59.319 47.619 0.00 0.00 0.00 3.16
2546 2827 1.956477 AGTGGTAAAGTTGCTGCCTTG 59.044 47.619 0.00 0.00 0.00 3.61
2547 2828 1.956477 CAGTGGTAAAGTTGCTGCCTT 59.044 47.619 0.00 0.00 0.00 4.35
2548 2829 1.609208 CAGTGGTAAAGTTGCTGCCT 58.391 50.000 0.00 0.00 0.00 4.75
2549 2830 0.039165 GCAGTGGTAAAGTTGCTGCC 60.039 55.000 0.00 0.00 44.61 4.85
2550 2831 0.385974 CGCAGTGGTAAAGTTGCTGC 60.386 55.000 0.00 0.00 46.22 5.25
2551 2832 0.385974 GCGCAGTGGTAAAGTTGCTG 60.386 55.000 0.30 0.00 34.50 4.41
2552 2833 1.515521 GGCGCAGTGGTAAAGTTGCT 61.516 55.000 10.83 0.00 34.50 3.91
2553 2834 1.081442 GGCGCAGTGGTAAAGTTGC 60.081 57.895 10.83 0.00 0.00 4.17
2554 2835 0.665835 TTGGCGCAGTGGTAAAGTTG 59.334 50.000 10.83 0.00 0.00 3.16
2555 2836 0.951558 CTTGGCGCAGTGGTAAAGTT 59.048 50.000 10.83 0.00 0.00 2.66
2556 2837 0.889186 CCTTGGCGCAGTGGTAAAGT 60.889 55.000 10.83 0.00 0.00 2.66
2557 2838 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2558 2839 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2559 2840 1.832719 TAGCCTTGGCGCAGTGGTAA 61.833 55.000 10.83 0.00 0.00 2.85
2560 2841 2.287274 TAGCCTTGGCGCAGTGGTA 61.287 57.895 10.83 1.19 0.00 3.25
2561 2842 3.636231 TAGCCTTGGCGCAGTGGT 61.636 61.111 10.83 2.27 0.00 4.16
2562 2843 3.127533 GTAGCCTTGGCGCAGTGG 61.128 66.667 10.83 8.70 0.00 4.00
2563 2844 2.046892 AGTAGCCTTGGCGCAGTG 60.047 61.111 10.83 0.00 0.00 3.66
2564 2845 1.903877 ATCAGTAGCCTTGGCGCAGT 61.904 55.000 10.83 0.00 0.00 4.40
2565 2846 0.745845 AATCAGTAGCCTTGGCGCAG 60.746 55.000 10.83 0.00 0.00 5.18
2566 2847 0.322456 AAATCAGTAGCCTTGGCGCA 60.322 50.000 10.83 0.00 0.00 6.09
2567 2848 0.811281 AAAATCAGTAGCCTTGGCGC 59.189 50.000 0.00 0.00 0.00 6.53
2568 2849 1.468054 GCAAAATCAGTAGCCTTGGCG 60.468 52.381 5.95 0.00 0.00 5.69
2569 2850 1.821136 AGCAAAATCAGTAGCCTTGGC 59.179 47.619 2.97 2.97 0.00 4.52
2570 2851 2.821969 ACAGCAAAATCAGTAGCCTTGG 59.178 45.455 0.00 0.00 0.00 3.61
2571 2852 4.510038 AACAGCAAAATCAGTAGCCTTG 57.490 40.909 0.00 0.00 0.00 3.61
2572 2853 4.584325 TGAAACAGCAAAATCAGTAGCCTT 59.416 37.500 0.00 0.00 0.00 4.35
2573 2854 4.144297 TGAAACAGCAAAATCAGTAGCCT 58.856 39.130 0.00 0.00 0.00 4.58
2574 2855 4.503741 TGAAACAGCAAAATCAGTAGCC 57.496 40.909 0.00 0.00 0.00 3.93
2575 2856 4.919754 CCTTGAAACAGCAAAATCAGTAGC 59.080 41.667 0.00 0.00 0.00 3.58
2576 2857 6.016777 AGTCCTTGAAACAGCAAAATCAGTAG 60.017 38.462 0.00 0.00 0.00 2.57
2577 2858 5.827797 AGTCCTTGAAACAGCAAAATCAGTA 59.172 36.000 0.00 0.00 0.00 2.74
2578 2859 4.646492 AGTCCTTGAAACAGCAAAATCAGT 59.354 37.500 0.00 0.00 0.00 3.41
2579 2860 5.192327 AGTCCTTGAAACAGCAAAATCAG 57.808 39.130 0.00 0.00 0.00 2.90
2580 2861 5.126869 TCAAGTCCTTGAAACAGCAAAATCA 59.873 36.000 7.26 0.00 45.56 2.57
2581 2862 5.591099 TCAAGTCCTTGAAACAGCAAAATC 58.409 37.500 7.26 0.00 45.56 2.17
2582 2863 5.596836 TCAAGTCCTTGAAACAGCAAAAT 57.403 34.783 7.26 0.00 45.56 1.82
2583 2864 7.744641 TGTCTCAAGTCCTTGAAACAGCAAAA 61.745 38.462 11.20 0.00 43.28 2.44
2584 2865 6.323003 TGTCTCAAGTCCTTGAAACAGCAAA 61.323 40.000 11.20 0.00 43.28 3.68
2585 2866 4.866439 TGTCTCAAGTCCTTGAAACAGCAA 60.866 41.667 11.20 0.00 43.28 3.91
2586 2867 3.370421 TGTCTCAAGTCCTTGAAACAGCA 60.370 43.478 11.20 4.20 43.28 4.41
2587 2868 3.206150 TGTCTCAAGTCCTTGAAACAGC 58.794 45.455 11.20 2.13 43.28 4.40
2588 2869 5.731686 GCTTTGTCTCAAGTCCTTGAAACAG 60.732 44.000 14.00 7.15 46.99 3.16
2589 2870 4.096382 GCTTTGTCTCAAGTCCTTGAAACA 59.904 41.667 11.20 11.20 45.54 2.83
2593 2874 3.134623 TGAGCTTTGTCTCAAGTCCTTGA 59.865 43.478 9.25 9.25 46.27 3.02
2594 2875 3.470709 TGAGCTTTGTCTCAAGTCCTTG 58.529 45.455 0.47 0.47 39.89 3.61
2595 2876 3.845781 TGAGCTTTGTCTCAAGTCCTT 57.154 42.857 0.00 0.00 39.89 3.36
2596 2877 5.046014 ACATATGAGCTTTGTCTCAAGTCCT 60.046 40.000 10.38 0.00 45.17 3.85
2597 2878 5.064452 CACATATGAGCTTTGTCTCAAGTCC 59.936 44.000 10.38 0.00 45.17 3.85
2598 2879 5.064452 CCACATATGAGCTTTGTCTCAAGTC 59.936 44.000 10.38 0.00 45.17 3.01
2599 2880 4.940046 CCACATATGAGCTTTGTCTCAAGT 59.060 41.667 10.38 0.00 45.17 3.16
2600 2881 5.181009 TCCACATATGAGCTTTGTCTCAAG 58.819 41.667 10.38 0.00 45.17 3.02
2601 2882 5.164620 TCCACATATGAGCTTTGTCTCAA 57.835 39.130 10.38 0.00 45.17 3.02
2602 2883 4.223700 ACTCCACATATGAGCTTTGTCTCA 59.776 41.667 10.38 0.00 45.97 3.27
2603 2884 4.764172 ACTCCACATATGAGCTTTGTCTC 58.236 43.478 10.38 0.00 32.98 3.36
2604 2885 4.833478 ACTCCACATATGAGCTTTGTCT 57.167 40.909 10.38 0.00 32.98 3.41
2605 2886 6.985188 TTTACTCCACATATGAGCTTTGTC 57.015 37.500 10.38 0.00 32.98 3.18
2606 2887 9.461312 TTTATTTACTCCACATATGAGCTTTGT 57.539 29.630 10.38 3.33 32.98 2.83
2610 2891 9.461312 TGTTTTTATTTACTCCACATATGAGCT 57.539 29.630 10.38 0.00 32.98 4.09
2650 2931 7.976135 ATGCTAACCAGATGAACTCATAATC 57.024 36.000 0.00 0.00 36.57 1.75
2656 2937 8.894768 AATAGTAATGCTAACCAGATGAACTC 57.105 34.615 0.00 0.00 32.72 3.01
2674 2955 6.710597 AGTAGCATTGTCGGAGAATAGTAA 57.289 37.500 0.00 0.00 39.69 2.24
2685 2966 5.408356 ACAGGTTTACTAGTAGCATTGTCG 58.592 41.667 2.23 0.00 0.00 4.35
2700 2981 4.202524 ACAGCAAGGTGGATTACAGGTTTA 60.203 41.667 4.16 0.00 0.00 2.01
2704 2985 2.496899 ACAGCAAGGTGGATTACAGG 57.503 50.000 4.16 0.00 0.00 4.00
2733 3014 6.067350 TGCATAACATAAGATTGGTGCCATA 58.933 36.000 0.00 0.00 0.00 2.74
2756 3037 2.229784 GGTGGTTTTTGCTCATCTCCTG 59.770 50.000 0.00 0.00 0.00 3.86
2895 3184 9.256228 AGACAGATAAATCCTACTCAGTTAACA 57.744 33.333 8.61 0.00 0.00 2.41
2896 3185 9.522804 CAGACAGATAAATCCTACTCAGTTAAC 57.477 37.037 0.00 0.00 0.00 2.01
2902 3191 6.324770 TGCATCAGACAGATAAATCCTACTCA 59.675 38.462 0.00 0.00 34.43 3.41
3108 3397 8.539117 AAGGGTTGAATTCATAATAGGAAAGG 57.461 34.615 9.40 0.00 0.00 3.11
3133 3422 4.497291 AATTAATCCTACAGGGTTGCGA 57.503 40.909 3.93 0.00 39.28 5.10
3158 3447 2.262423 ACAAGCAGTTCCTGGAGTTC 57.738 50.000 0.00 0.00 31.21 3.01
3310 3599 2.356135 ACCTTGACATCGCCAACATAC 58.644 47.619 0.00 0.00 0.00 2.39
3441 3737 2.499289 TCACCCTGCTTCTCTCAAGATC 59.501 50.000 0.00 0.00 0.00 2.75
3545 3853 4.334481 AGTTCACTTTTTACCTGTGTTCCG 59.666 41.667 0.00 0.00 33.82 4.30
3683 3991 5.530519 ACTTGATTGTGCGTACTAACATG 57.469 39.130 4.97 7.35 0.00 3.21
3858 4167 5.863397 CGTTCAGATTATGCACAAAAACCAT 59.137 36.000 0.00 0.00 0.00 3.55
4112 4421 5.912955 GGCGTATAAAATGGTTATTGCTGTC 59.087 40.000 0.00 0.00 0.00 3.51
4128 4437 1.408340 TGGATTTCGGACGGCGTATAA 59.592 47.619 14.74 4.63 0.00 0.98
4409 4718 2.113986 AAAACCTGCAGCGAGGCT 59.886 55.556 8.66 0.00 40.77 4.58
4486 4796 5.877012 CCCGATCCATTCTTAGATTGTATGG 59.123 44.000 4.69 4.69 37.65 2.74
4487 4797 5.352569 GCCCGATCCATTCTTAGATTGTATG 59.647 44.000 3.85 0.00 0.00 2.39
4496 4806 1.801242 TGGAGCCCGATCCATTCTTA 58.199 50.000 0.00 0.00 44.56 2.10
4541 4852 4.210447 CGCCAAGACGCTGTTTTG 57.790 55.556 5.42 5.42 0.00 2.44
4592 4903 2.182312 AGGAGGGGGTATTGCTCTCATA 59.818 50.000 0.00 0.00 0.00 2.15
4616 4931 4.862447 CTGCTAGCGGGGCATGCA 62.862 66.667 21.36 0.00 39.07 3.96
4623 4938 2.124695 GTTTCCCCTGCTAGCGGG 60.125 66.667 32.50 32.50 42.03 6.13
4661 4977 1.960689 TGCTGGGTTGGCTTTACTTTC 59.039 47.619 0.00 0.00 0.00 2.62
4755 5071 2.434336 ACACGGCTTCTTGGATGCTATA 59.566 45.455 5.62 0.00 33.95 1.31
4772 5088 4.377897 AGGACTAAAAACTTGGAGACACG 58.622 43.478 0.00 0.00 42.67 4.49
4774 5090 5.623956 TGAGGACTAAAAACTTGGAGACA 57.376 39.130 0.00 0.00 39.83 3.41
4844 5160 3.614092 TCTGATGATTGCTGGAAGAACC 58.386 45.455 0.00 0.00 34.07 3.62
4849 5165 3.276857 GCTTCTCTGATGATTGCTGGAA 58.723 45.455 0.00 0.00 0.00 3.53
4867 5183 0.844221 AAGGGAGCAAGGAGAGGCTT 60.844 55.000 0.00 0.00 41.22 4.35
4873 5189 3.137176 TGATGGAATAAGGGAGCAAGGAG 59.863 47.826 0.00 0.00 0.00 3.69
4897 5213 0.640768 GACGACGCTAGTGCATCAAC 59.359 55.000 2.40 0.00 39.64 3.18
4898 5214 0.457853 GGACGACGCTAGTGCATCAA 60.458 55.000 2.40 0.00 39.64 2.57
4905 5221 1.884579 TCTTCAAAGGACGACGCTAGT 59.115 47.619 0.00 0.00 0.00 2.57
4907 5223 1.402456 GCTCTTCAAAGGACGACGCTA 60.402 52.381 0.00 0.00 0.00 4.26
4946 5262 2.708216 ATGGTGGTGATCGTGCAATA 57.292 45.000 0.00 0.00 0.00 1.90
4973 5289 4.258702 AGAACTATACTATTGGGCAGCG 57.741 45.455 0.00 0.00 0.00 5.18
4993 5309 7.447374 TCATTTGGTATGTTGTGTCCTTTAG 57.553 36.000 0.00 0.00 0.00 1.85
5010 5327 4.398358 AGATCATGTGCTGAGTTCATTTGG 59.602 41.667 0.00 0.00 37.28 3.28
5019 5336 5.199024 AGCTAGTTAGATCATGTGCTGAG 57.801 43.478 0.00 0.00 37.28 3.35
5095 5412 1.296056 CTGCAAATTGCTGGCTTGGC 61.296 55.000 19.34 0.00 45.31 4.52
5104 5421 7.196331 CCTTATAGTAGAAACCTGCAAATTGC 58.804 38.462 11.58 11.58 45.29 3.56
5197 5514 9.599866 CAAATATGTCTGGAGTATTGTGAGTAA 57.400 33.333 0.00 0.00 0.00 2.24
5198 5515 8.204160 CCAAATATGTCTGGAGTATTGTGAGTA 58.796 37.037 0.00 0.00 34.35 2.59
5199 5516 7.050377 CCAAATATGTCTGGAGTATTGTGAGT 58.950 38.462 0.00 0.00 34.35 3.41
5200 5517 6.017605 GCCAAATATGTCTGGAGTATTGTGAG 60.018 42.308 3.48 0.00 34.35 3.51
5201 5518 5.822519 GCCAAATATGTCTGGAGTATTGTGA 59.177 40.000 3.48 0.00 34.35 3.58
5202 5519 5.589855 TGCCAAATATGTCTGGAGTATTGTG 59.410 40.000 3.48 0.00 34.35 3.33
5203 5520 5.754782 TGCCAAATATGTCTGGAGTATTGT 58.245 37.500 3.48 0.00 34.35 2.71
5204 5521 5.240183 CCTGCCAAATATGTCTGGAGTATTG 59.760 44.000 3.48 0.00 34.35 1.90
5205 5522 5.103940 ACCTGCCAAATATGTCTGGAGTATT 60.104 40.000 3.48 0.00 34.35 1.89
5206 5523 4.413520 ACCTGCCAAATATGTCTGGAGTAT 59.586 41.667 3.48 0.00 34.35 2.12
5207 5524 3.780294 ACCTGCCAAATATGTCTGGAGTA 59.220 43.478 3.48 0.00 34.35 2.59
5208 5525 2.578021 ACCTGCCAAATATGTCTGGAGT 59.422 45.455 3.48 0.00 34.35 3.85
5209 5526 2.947652 CACCTGCCAAATATGTCTGGAG 59.052 50.000 3.48 0.00 34.35 3.86
5210 5527 2.575735 TCACCTGCCAAATATGTCTGGA 59.424 45.455 3.48 0.00 34.35 3.86
5211 5528 3.003394 TCACCTGCCAAATATGTCTGG 57.997 47.619 0.00 0.00 35.67 3.86
5212 5529 5.587388 AAATCACCTGCCAAATATGTCTG 57.413 39.130 0.00 0.00 0.00 3.51
5213 5530 6.266103 CCATAAATCACCTGCCAAATATGTCT 59.734 38.462 0.00 0.00 0.00 3.41
5214 5531 6.040842 ACCATAAATCACCTGCCAAATATGTC 59.959 38.462 0.00 0.00 0.00 3.06
5215 5532 5.898972 ACCATAAATCACCTGCCAAATATGT 59.101 36.000 0.00 0.00 0.00 2.29
5216 5533 6.409524 ACCATAAATCACCTGCCAAATATG 57.590 37.500 0.00 0.00 0.00 1.78
5217 5534 7.125507 TGAAACCATAAATCACCTGCCAAATAT 59.874 33.333 0.00 0.00 0.00 1.28
5218 5535 6.438741 TGAAACCATAAATCACCTGCCAAATA 59.561 34.615 0.00 0.00 0.00 1.40
5219 5536 5.248020 TGAAACCATAAATCACCTGCCAAAT 59.752 36.000 0.00 0.00 0.00 2.32
5220 5537 4.590647 TGAAACCATAAATCACCTGCCAAA 59.409 37.500 0.00 0.00 0.00 3.28
5221 5538 4.155709 TGAAACCATAAATCACCTGCCAA 58.844 39.130 0.00 0.00 0.00 4.52
5222 5539 3.772387 TGAAACCATAAATCACCTGCCA 58.228 40.909 0.00 0.00 0.00 4.92
5223 5540 5.343307 AATGAAACCATAAATCACCTGCC 57.657 39.130 0.00 0.00 0.00 4.85
5224 5541 7.715657 TGATAATGAAACCATAAATCACCTGC 58.284 34.615 0.00 0.00 29.21 4.85
5225 5542 9.903682 GATGATAATGAAACCATAAATCACCTG 57.096 33.333 0.00 0.00 33.32 4.00
5226 5543 8.786898 CGATGATAATGAAACCATAAATCACCT 58.213 33.333 0.00 0.00 33.32 4.00
5227 5544 7.538678 GCGATGATAATGAAACCATAAATCACC 59.461 37.037 0.00 0.00 33.32 4.02
5228 5545 8.075574 TGCGATGATAATGAAACCATAAATCAC 58.924 33.333 0.00 0.00 33.32 3.06
5229 5546 8.164058 TGCGATGATAATGAAACCATAAATCA 57.836 30.769 0.00 0.00 34.19 2.57
5230 5547 8.506437 TCTGCGATGATAATGAAACCATAAATC 58.494 33.333 0.00 0.00 0.00 2.17
5231 5548 8.394971 TCTGCGATGATAATGAAACCATAAAT 57.605 30.769 0.00 0.00 0.00 1.40
5232 5549 7.800155 TCTGCGATGATAATGAAACCATAAA 57.200 32.000 0.00 0.00 0.00 1.40
5233 5550 7.520453 GCTTCTGCGATGATAATGAAACCATAA 60.520 37.037 0.00 0.00 0.00 1.90
5234 5551 6.073058 GCTTCTGCGATGATAATGAAACCATA 60.073 38.462 0.00 0.00 0.00 2.74
5235 5552 5.278169 GCTTCTGCGATGATAATGAAACCAT 60.278 40.000 0.00 0.00 0.00 3.55
5236 5553 4.035558 GCTTCTGCGATGATAATGAAACCA 59.964 41.667 0.00 0.00 0.00 3.67
5237 5554 4.531332 GCTTCTGCGATGATAATGAAACC 58.469 43.478 0.00 0.00 0.00 3.27
5252 5569 1.166531 ACCCTTTGTGTCGCTTCTGC 61.167 55.000 0.00 0.00 0.00 4.26
5253 5570 0.868406 GACCCTTTGTGTCGCTTCTG 59.132 55.000 0.00 0.00 0.00 3.02
5254 5571 0.250338 GGACCCTTTGTGTCGCTTCT 60.250 55.000 0.00 0.00 33.46 2.85
5255 5572 1.235281 GGGACCCTTTGTGTCGCTTC 61.235 60.000 2.09 0.00 41.11 3.86
5256 5573 1.228154 GGGACCCTTTGTGTCGCTT 60.228 57.895 2.09 0.00 41.11 4.68
5257 5574 2.430367 GGGACCCTTTGTGTCGCT 59.570 61.111 2.09 0.00 41.11 4.93
5270 5587 0.902984 AAGAAAAATGGGCGGGGGAC 60.903 55.000 0.00 0.00 0.00 4.46
5271 5588 0.178918 AAAGAAAAATGGGCGGGGGA 60.179 50.000 0.00 0.00 0.00 4.81
5272 5589 1.562783 TAAAGAAAAATGGGCGGGGG 58.437 50.000 0.00 0.00 0.00 5.40
5273 5590 3.196685 TGATTAAAGAAAAATGGGCGGGG 59.803 43.478 0.00 0.00 0.00 5.73
5274 5591 4.464069 TGATTAAAGAAAAATGGGCGGG 57.536 40.909 0.00 0.00 0.00 6.13
5275 5592 5.418676 ACATGATTAAAGAAAAATGGGCGG 58.581 37.500 0.00 0.00 0.00 6.13
5276 5593 6.672836 GCAACATGATTAAAGAAAAATGGGCG 60.673 38.462 0.00 0.00 0.00 6.13
5277 5594 6.545508 GCAACATGATTAAAGAAAAATGGGC 58.454 36.000 0.00 0.00 0.00 5.36
5278 5595 6.368516 ACGCAACATGATTAAAGAAAAATGGG 59.631 34.615 0.00 0.00 0.00 4.00
5279 5596 7.350110 ACGCAACATGATTAAAGAAAAATGG 57.650 32.000 0.00 0.00 0.00 3.16
5280 5597 9.305110 GAAACGCAACATGATTAAAGAAAAATG 57.695 29.630 0.00 0.00 0.00 2.32
5281 5598 8.213812 CGAAACGCAACATGATTAAAGAAAAAT 58.786 29.630 0.00 0.00 0.00 1.82
5282 5599 7.221067 ACGAAACGCAACATGATTAAAGAAAAA 59.779 29.630 0.00 0.00 0.00 1.94
5283 5600 6.693545 ACGAAACGCAACATGATTAAAGAAAA 59.306 30.769 0.00 0.00 0.00 2.29
5284 5601 6.141527 CACGAAACGCAACATGATTAAAGAAA 59.858 34.615 0.00 0.00 0.00 2.52
5285 5602 5.623264 CACGAAACGCAACATGATTAAAGAA 59.377 36.000 0.00 0.00 0.00 2.52
5286 5603 5.143660 CACGAAACGCAACATGATTAAAGA 58.856 37.500 0.00 0.00 0.00 2.52
5287 5604 4.320690 CCACGAAACGCAACATGATTAAAG 59.679 41.667 0.00 0.00 0.00 1.85
5288 5605 4.222886 CCACGAAACGCAACATGATTAAA 58.777 39.130 0.00 0.00 0.00 1.52
5289 5606 3.816091 CCACGAAACGCAACATGATTAA 58.184 40.909 0.00 0.00 0.00 1.40
5290 5607 2.413502 GCCACGAAACGCAACATGATTA 60.414 45.455 0.00 0.00 0.00 1.75
5291 5608 1.665735 GCCACGAAACGCAACATGATT 60.666 47.619 0.00 0.00 0.00 2.57
5292 5609 0.109781 GCCACGAAACGCAACATGAT 60.110 50.000 0.00 0.00 0.00 2.45
5301 5618 0.388391 AATGCCATTGCCACGAAACG 60.388 50.000 0.00 0.00 36.33 3.60
5302 5619 1.070038 CAATGCCATTGCCACGAAAC 58.930 50.000 4.18 0.00 36.33 2.78
5335 5652 7.704047 TGCCTTTGAAAATTAAATTTTGGTTGC 59.296 29.630 0.00 0.00 42.15 4.17
5350 5667 4.394610 GGAAAGCAAAACTGCCTTTGAAAA 59.605 37.500 7.09 0.00 38.35 2.29
5375 5694 9.368674 GGTCATGATAGATCATTTAGACATCTG 57.631 37.037 16.89 1.86 44.70 2.90
5397 5716 0.325933 CACCTTCCTGATGCTGGTCA 59.674 55.000 0.00 0.00 0.00 4.02
5410 5729 8.928733 TGTTAAGTCAAACGTATAATCACCTTC 58.071 33.333 0.00 0.00 31.76 3.46
5421 5740 8.428186 AGAAATTCACTGTTAAGTCAAACGTA 57.572 30.769 0.00 0.00 32.98 3.57
5423 5742 8.614994 AAAGAAATTCACTGTTAAGTCAAACG 57.385 30.769 0.00 0.00 32.98 3.60
5451 5770 8.836268 TGGAATACGACATTTAGTTAAACAGT 57.164 30.769 0.00 0.00 0.00 3.55
5453 5772 9.881529 GTTTGGAATACGACATTTAGTTAAACA 57.118 29.630 0.00 0.00 0.00 2.83
5454 5773 9.881529 TGTTTGGAATACGACATTTAGTTAAAC 57.118 29.630 0.00 0.00 0.00 2.01
5456 5775 9.275398 ACTGTTTGGAATACGACATTTAGTTAA 57.725 29.630 0.00 0.00 0.00 2.01
5457 5776 8.714179 CACTGTTTGGAATACGACATTTAGTTA 58.286 33.333 0.00 0.00 0.00 2.24
5458 5777 7.581476 CACTGTTTGGAATACGACATTTAGTT 58.419 34.615 0.00 0.00 0.00 2.24
5459 5778 6.348213 GCACTGTTTGGAATACGACATTTAGT 60.348 38.462 0.00 0.00 0.00 2.24
5478 5841 2.276732 AATGGCTAACACTGCACTGT 57.723 45.000 0.00 0.00 0.00 3.55
5479 5842 2.923605 GCAAATGGCTAACACTGCACTG 60.924 50.000 0.00 0.00 39.73 3.66
5480 5843 1.270550 GCAAATGGCTAACACTGCACT 59.729 47.619 0.00 0.00 39.73 4.40
5481 5844 1.701704 GCAAATGGCTAACACTGCAC 58.298 50.000 0.00 0.00 39.73 4.57
5546 5912 5.221422 GCAGTGACAAGCCTCTTCTATCTAT 60.221 44.000 0.00 0.00 0.00 1.98
5588 5954 3.803778 GGCAATGGAAAACAAACAGACTG 59.196 43.478 0.00 0.00 0.00 3.51
5593 5959 3.274288 GGTTGGCAATGGAAAACAAACA 58.726 40.909 1.92 0.00 0.00 2.83
5610 5976 2.309136 AAGATGAAGGTTGGGGGTTG 57.691 50.000 0.00 0.00 0.00 3.77
5611 5977 2.450886 AGAAAGATGAAGGTTGGGGGTT 59.549 45.455 0.00 0.00 0.00 4.11
5612 5978 2.041755 GAGAAAGATGAAGGTTGGGGGT 59.958 50.000 0.00 0.00 0.00 4.95
5613 5979 2.621668 GGAGAAAGATGAAGGTTGGGGG 60.622 54.545 0.00 0.00 0.00 5.40
5614 5980 2.621668 GGGAGAAAGATGAAGGTTGGGG 60.622 54.545 0.00 0.00 0.00 4.96
5615 5981 2.310052 AGGGAGAAAGATGAAGGTTGGG 59.690 50.000 0.00 0.00 0.00 4.12
5616 5982 3.728385 AGGGAGAAAGATGAAGGTTGG 57.272 47.619 0.00 0.00 0.00 3.77
5643 6009 8.853126 TGATCTGATCAAAATCAAAGACTTGTT 58.147 29.630 17.56 0.00 41.33 2.83
5686 6052 8.948631 ATACCAACTTCATAGTACAGTGAATG 57.051 34.615 11.75 9.03 34.18 2.67
5757 6123 3.118112 TCTTGAATCCAGAGAAGGGATGC 60.118 47.826 0.00 0.00 44.30 3.91
5816 6182 5.129320 GGCTGGGTCTTCATAATTTGGAAAT 59.871 40.000 0.00 0.00 0.00 2.17
5832 6198 0.609406 GAAGAAAGGTGGGCTGGGTC 60.609 60.000 0.00 0.00 0.00 4.46
5862 6229 1.971695 GTTAGGTGGCCAGTGGTGC 60.972 63.158 5.11 0.00 0.00 5.01
5911 6281 9.571816 TTCAACATAACATTATCATATCAGGCA 57.428 29.630 0.00 0.00 0.00 4.75
5912 6282 9.831737 GTTCAACATAACATTATCATATCAGGC 57.168 33.333 0.00 0.00 0.00 4.85
5923 6293 8.800370 TTGGATGCTAGTTCAACATAACATTA 57.200 30.769 0.00 0.00 0.00 1.90
5925 6295 7.701539 TTTGGATGCTAGTTCAACATAACAT 57.298 32.000 0.00 0.00 0.00 2.71
5940 6324 8.533657 TGATAACATTTCAGAATTTTGGATGCT 58.466 29.630 10.86 4.75 0.00 3.79
6268 6652 0.242017 CTAAAAGGCAGCTGCGCTTT 59.758 50.000 32.15 32.15 43.26 3.51
6352 6736 1.543802 TCCCGGCAAATGTAAAAGCAG 59.456 47.619 0.00 0.00 0.00 4.24
6366 6776 1.373497 CTGATAGCACGATCCCGGC 60.373 63.158 0.00 0.00 40.78 6.13
6448 6858 0.683828 TTCCATACCGACGCTACCCA 60.684 55.000 0.00 0.00 0.00 4.51
6462 6872 2.373169 AGGCACGACCATCATATTCCAT 59.627 45.455 0.00 0.00 43.14 3.41
6474 6884 1.463444 GAAACACATACAGGCACGACC 59.537 52.381 0.00 0.00 39.61 4.79
6477 6887 2.413112 CAGAGAAACACATACAGGCACG 59.587 50.000 0.00 0.00 0.00 5.34
6484 6894 5.023551 GTTGCTCACAGAGAAACACATAC 57.976 43.478 11.99 0.00 45.05 2.39
6586 6996 3.088532 GCTCACATATGGGGTTGACAAA 58.911 45.455 4.82 0.00 0.00 2.83
6594 7004 3.828451 CCCAAATAAGCTCACATATGGGG 59.172 47.826 4.82 0.00 42.05 4.96
6692 7106 5.277857 ACTCCCTCCGTTCACAAATATAG 57.722 43.478 0.00 0.00 0.00 1.31
6863 7281 7.120726 CGGTTTTAATGGAGTAAGAGACCAAAT 59.879 37.037 0.00 0.00 37.24 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.