Multiple sequence alignment - TraesCS7B01G093700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G093700 chr7B 100.000 3184 0 0 1 3184 107562162 107565345 0.000000e+00 5880.0
1 TraesCS7B01G093700 chr7B 86.050 681 84 11 1 674 41166714 41167390 0.000000e+00 721.0
2 TraesCS7B01G093700 chr7A 92.324 1876 75 30 725 2557 145461607 145463456 0.000000e+00 2603.0
3 TraesCS7B01G093700 chr7A 87.445 685 75 10 1 677 118244746 118244065 0.000000e+00 778.0
4 TraesCS7B01G093700 chr7A 96.000 100 4 0 2550 2649 216788011 216787912 2.540000e-36 163.0
5 TraesCS7B01G093700 chr7A 98.901 91 1 0 2554 2644 661299125 661299215 2.540000e-36 163.0
6 TraesCS7B01G093700 chr7A 90.816 98 9 0 2638 2735 581879615 581879518 7.170000e-27 132.0
7 TraesCS7B01G093700 chr7A 79.268 164 11 6 2678 2841 145463479 145463619 3.380000e-15 93.5
8 TraesCS7B01G093700 chr7A 94.231 52 3 0 2436 2487 581880237 581880186 2.630000e-11 80.5
9 TraesCS7B01G093700 chr7A 97.143 35 1 0 2809 2843 712973723 712973757 3.430000e-05 60.2
10 TraesCS7B01G093700 chr7D 92.811 1711 70 28 725 2420 144148279 144146607 0.000000e+00 2429.0
11 TraesCS7B01G093700 chr7D 93.750 960 46 11 1472 2420 144145607 144144651 0.000000e+00 1428.0
12 TraesCS7B01G093700 chr7D 93.548 961 44 14 1472 2420 144146584 144145630 0.000000e+00 1415.0
13 TraesCS7B01G093700 chr7D 91.008 734 28 18 1826 2557 144144239 144143542 0.000000e+00 955.0
14 TraesCS7B01G093700 chr7D 91.003 678 57 4 1 674 66549695 66550372 0.000000e+00 911.0
15 TraesCS7B01G093700 chr7D 96.774 372 11 1 1472 1842 144144628 144144257 1.250000e-173 619.0
16 TraesCS7B01G093700 chr7D 84.727 550 47 11 2638 3184 144143544 144143029 1.690000e-142 516.0
17 TraesCS7B01G093700 chr3B 91.016 679 55 6 1 674 201879109 201878432 0.000000e+00 911.0
18 TraesCS7B01G093700 chr3B 87.334 679 77 7 1 674 141073993 141074667 0.000000e+00 769.0
19 TraesCS7B01G093700 chr3B 98.864 88 1 0 2554 2641 283360477 283360390 1.180000e-34 158.0
20 TraesCS7B01G093700 chr3B 95.000 100 4 1 2554 2653 659068495 659068593 4.250000e-34 156.0
21 TraesCS7B01G093700 chr5B 90.370 675 61 4 1 671 608345660 608344986 0.000000e+00 883.0
22 TraesCS7B01G093700 chr4D 90.147 680 63 4 1 676 450497059 450496380 0.000000e+00 881.0
23 TraesCS7B01G093700 chr1A 89.528 678 64 5 1 674 148653228 148653902 0.000000e+00 852.0
24 TraesCS7B01G093700 chr1A 94.565 92 5 0 2640 2731 589823529 589823620 3.310000e-30 143.0
25 TraesCS7B01G093700 chr1A 85.714 119 12 2 2440 2557 589823402 589823516 1.550000e-23 121.0
26 TraesCS7B01G093700 chr6B 87.407 675 78 5 4 674 617802989 617802318 0.000000e+00 769.0
27 TraesCS7B01G093700 chr6B 77.273 220 37 7 2809 3016 554025622 554025404 2.010000e-22 117.0
28 TraesCS7B01G093700 chr2A 98.936 94 1 0 2554 2647 777289168 777289261 5.460000e-38 169.0
29 TraesCS7B01G093700 chr2A 95.699 93 4 0 2638 2730 657517416 657517324 1.980000e-32 150.0
30 TraesCS7B01G093700 chr2A 78.541 233 38 9 2794 3016 705761320 705761090 3.310000e-30 143.0
31 TraesCS7B01G093700 chr2A 77.966 236 43 8 2801 3029 23481071 23481304 4.280000e-29 139.0
32 TraesCS7B01G093700 chr5A 100.000 89 0 0 2554 2642 332947291 332947203 7.070000e-37 165.0
33 TraesCS7B01G093700 chr5A 100.000 89 0 0 2554 2642 580273581 580273669 7.070000e-37 165.0
34 TraesCS7B01G093700 chr1B 96.000 100 4 0 2549 2648 371141194 371141095 2.540000e-36 163.0
35 TraesCS7B01G093700 chr1B 77.391 230 43 7 2794 3016 639086176 639085949 9.270000e-26 128.0
36 TraesCS7B01G093700 chr5D 95.960 99 2 2 2553 2649 565714523 565714425 3.290000e-35 159.0
37 TraesCS7B01G093700 chr4A 77.391 230 40 8 2794 3013 614007570 614007797 3.330000e-25 126.0
38 TraesCS7B01G093700 chr2B 75.709 247 48 6 2794 3029 657717978 657718223 2.600000e-21 113.0
39 TraesCS7B01G093700 chr2B 83.000 100 17 0 2636 2735 22785573 22785474 1.220000e-14 91.6
40 TraesCS7B01G093700 chr2B 96.000 50 2 0 2686 2735 604992643 604992594 7.320000e-12 82.4
41 TraesCS7B01G093700 chr4B 85.321 109 9 3 2449 2554 113959531 113959635 4.340000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G093700 chr7B 107562162 107565345 3183 False 5880.00 5880 100.000 1 3184 1 chr7B.!!$F2 3183
1 TraesCS7B01G093700 chr7B 41166714 41167390 676 False 721.00 721 86.050 1 674 1 chr7B.!!$F1 673
2 TraesCS7B01G093700 chr7A 145461607 145463619 2012 False 1348.25 2603 85.796 725 2841 2 chr7A.!!$F3 2116
3 TraesCS7B01G093700 chr7A 118244065 118244746 681 True 778.00 778 87.445 1 677 1 chr7A.!!$R1 676
4 TraesCS7B01G093700 chr7D 144143029 144148279 5250 True 1227.00 2429 92.103 725 3184 6 chr7D.!!$R1 2459
5 TraesCS7B01G093700 chr7D 66549695 66550372 677 False 911.00 911 91.003 1 674 1 chr7D.!!$F1 673
6 TraesCS7B01G093700 chr3B 201878432 201879109 677 True 911.00 911 91.016 1 674 1 chr3B.!!$R1 673
7 TraesCS7B01G093700 chr3B 141073993 141074667 674 False 769.00 769 87.334 1 674 1 chr3B.!!$F1 673
8 TraesCS7B01G093700 chr5B 608344986 608345660 674 True 883.00 883 90.370 1 671 1 chr5B.!!$R1 670
9 TraesCS7B01G093700 chr4D 450496380 450497059 679 True 881.00 881 90.147 1 676 1 chr4D.!!$R1 675
10 TraesCS7B01G093700 chr1A 148653228 148653902 674 False 852.00 852 89.528 1 674 1 chr1A.!!$F1 673
11 TraesCS7B01G093700 chr6B 617802318 617802989 671 True 769.00 769 87.407 4 674 1 chr6B.!!$R2 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 702 0.402861 AGGAAGGACTGACCCCCAAA 60.403 55.0 7.63 0.0 40.05 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2329 5348 0.036483 AGGACACGTACATGCATGCA 60.036 50.0 26.53 25.04 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.160205 TCTAGAGTCCACAACAGACCG 58.840 52.381 0.00 0.00 34.67 4.79
97 98 9.023967 GCATCCTTTGTGAATAATTACATTGAC 57.976 33.333 0.00 0.00 0.00 3.18
104 105 6.816140 TGTGAATAATTACATTGACGAGCTGA 59.184 34.615 0.00 0.00 0.00 4.26
127 129 3.889815 CCAGATACATGCAAGGAAGGAA 58.110 45.455 0.00 0.00 0.00 3.36
157 161 2.432563 CAAAGGGTGGCGGTGGTA 59.567 61.111 0.00 0.00 0.00 3.25
160 164 1.997256 AAAGGGTGGCGGTGGTACAA 61.997 55.000 0.00 0.00 44.16 2.41
200 204 2.102588 CCTCCGAGTGGTATGGTAAAGG 59.897 54.545 0.00 0.00 36.30 3.11
272 276 3.638627 AGCAATATGTCGAGATCAGGACA 59.361 43.478 17.68 17.68 46.19 4.02
315 319 4.054671 GCGGTTGTTTTTCATGGAATCAA 58.945 39.130 0.00 0.00 0.00 2.57
565 571 6.525976 GCTCATAATCTTGTCAAGTTTGCTTC 59.474 38.462 16.04 2.31 31.49 3.86
689 697 2.658807 AAAACAGGAAGGACTGACCC 57.341 50.000 0.00 0.00 40.97 4.46
690 698 0.771755 AAACAGGAAGGACTGACCCC 59.228 55.000 0.00 0.00 40.97 4.95
691 699 1.134438 AACAGGAAGGACTGACCCCC 61.134 60.000 0.00 0.00 40.97 5.40
692 700 1.538876 CAGGAAGGACTGACCCCCA 60.539 63.158 7.63 0.00 40.97 4.96
693 701 1.133809 CAGGAAGGACTGACCCCCAA 61.134 60.000 7.63 0.00 40.97 4.12
694 702 0.402861 AGGAAGGACTGACCCCCAAA 60.403 55.000 7.63 0.00 40.05 3.28
695 703 0.481128 GGAAGGACTGACCCCCAAAA 59.519 55.000 0.00 0.00 40.05 2.44
696 704 1.133294 GGAAGGACTGACCCCCAAAAA 60.133 52.381 0.00 0.00 40.05 1.94
697 705 2.492753 GGAAGGACTGACCCCCAAAAAT 60.493 50.000 0.00 0.00 40.05 1.82
698 706 2.604912 AGGACTGACCCCCAAAAATC 57.395 50.000 0.00 0.00 40.05 2.17
699 707 1.786441 AGGACTGACCCCCAAAAATCA 59.214 47.619 0.00 0.00 40.05 2.57
700 708 2.171003 GGACTGACCCCCAAAAATCAG 58.829 52.381 0.00 0.00 43.47 2.90
702 710 2.876581 ACTGACCCCCAAAAATCAGTC 58.123 47.619 0.00 0.00 46.92 3.51
703 711 1.812571 CTGACCCCCAAAAATCAGTCG 59.187 52.381 0.00 0.00 35.00 4.18
704 712 1.422024 TGACCCCCAAAAATCAGTCGA 59.578 47.619 0.00 0.00 0.00 4.20
705 713 2.041081 TGACCCCCAAAAATCAGTCGAT 59.959 45.455 0.00 0.00 0.00 3.59
706 714 3.089284 GACCCCCAAAAATCAGTCGATT 58.911 45.455 0.00 0.00 43.94 3.34
707 715 2.825532 ACCCCCAAAAATCAGTCGATTG 59.174 45.455 0.68 0.68 41.12 2.67
708 716 3.088532 CCCCCAAAAATCAGTCGATTGA 58.911 45.455 13.38 13.38 41.12 2.57
709 717 3.119495 CCCCCAAAAATCAGTCGATTGAC 60.119 47.826 13.28 4.78 41.12 3.18
710 718 3.119495 CCCCAAAAATCAGTCGATTGACC 60.119 47.826 13.28 0.00 46.74 4.02
711 719 3.119495 CCCAAAAATCAGTCGATTGACCC 60.119 47.826 13.28 0.00 46.74 4.46
712 720 3.426159 CCAAAAATCAGTCGATTGACCCG 60.426 47.826 13.28 1.76 46.74 5.28
713 721 2.762535 AAATCAGTCGATTGACCCGT 57.237 45.000 13.28 0.00 46.74 5.28
714 722 3.880047 AAATCAGTCGATTGACCCGTA 57.120 42.857 13.28 0.00 46.74 4.02
715 723 3.438297 AATCAGTCGATTGACCCGTAG 57.562 47.619 13.28 0.00 46.74 3.51
716 724 0.454600 TCAGTCGATTGACCCGTAGC 59.545 55.000 6.51 0.00 46.74 3.58
717 725 0.456221 CAGTCGATTGACCCGTAGCT 59.544 55.000 9.62 0.00 46.74 3.32
718 726 1.674441 CAGTCGATTGACCCGTAGCTA 59.326 52.381 9.62 0.00 46.74 3.32
719 727 1.948145 AGTCGATTGACCCGTAGCTAG 59.052 52.381 9.62 0.00 46.74 3.42
720 728 1.674962 GTCGATTGACCCGTAGCTAGT 59.325 52.381 1.10 0.00 39.30 2.57
721 729 1.945394 TCGATTGACCCGTAGCTAGTC 59.055 52.381 0.00 0.00 0.00 2.59
722 730 1.001597 CGATTGACCCGTAGCTAGTCC 60.002 57.143 8.64 0.00 0.00 3.85
723 731 1.340568 GATTGACCCGTAGCTAGTCCC 59.659 57.143 8.64 0.00 0.00 4.46
748 756 7.416213 CCAAATATTTTTGTATGCGAGGAGGAA 60.416 37.037 0.00 0.00 40.55 3.36
933 941 7.835682 CCCCATCTCTATAATATGCAAATCCAA 59.164 37.037 0.00 0.00 0.00 3.53
967 983 6.667848 TGATCAACCAGGACTTGATTAGTAGA 59.332 38.462 6.72 0.00 38.27 2.59
1005 1021 4.586618 CCGATCATCGAGATGGGC 57.413 61.111 9.16 5.02 44.24 5.36
1179 1195 1.588139 GTACGGCATCGACTTCGGG 60.588 63.158 0.00 0.00 40.29 5.14
1353 1369 1.078759 GTGGCATCCTCAACGAGACG 61.079 60.000 0.00 0.00 0.00 4.18
1404 1420 3.887110 TCACTTCACCAACTTCTCGTAGA 59.113 43.478 0.00 0.00 0.00 2.59
1423 1446 2.092374 CACCATGGTGTCATGCGAG 58.908 57.895 32.94 7.68 47.00 5.03
1445 1468 2.540515 ACGCTACGGTTTGATCATCTG 58.459 47.619 0.00 0.87 0.00 2.90
1448 1471 2.866762 GCTACGGTTTGATCATCTGACC 59.133 50.000 12.29 9.89 0.00 4.02
1456 2463 0.312416 GATCATCTGACCGAGACCCG 59.688 60.000 0.00 0.00 31.75 5.28
1472 2479 4.164664 CGTGGCGATTGCGTGCAT 62.165 61.111 0.00 0.00 44.10 3.96
1473 2480 2.577644 GTGGCGATTGCGTGCATG 60.578 61.111 0.09 0.09 44.10 4.06
1474 2481 4.479542 TGGCGATTGCGTGCATGC 62.480 61.111 24.20 24.20 44.10 4.06
1475 2482 4.479542 GGCGATTGCGTGCATGCA 62.480 61.111 29.30 29.30 44.10 3.96
1558 2565 3.849951 GCGGGAGAAGATCGGGCA 61.850 66.667 0.00 0.00 0.00 5.36
2194 5191 4.105553 CAGCTAGCCTGCCTGCCA 62.106 66.667 12.13 0.00 34.21 4.92
2195 5192 4.106925 AGCTAGCCTGCCTGCCAC 62.107 66.667 12.13 0.00 0.00 5.01
2217 5218 2.747460 GCCGCTCACCAAGATGCA 60.747 61.111 0.00 0.00 0.00 3.96
2225 5226 3.457234 CTCACCAAGATGCATACGCTTA 58.543 45.455 0.00 0.00 39.64 3.09
2249 5253 3.490759 CATGGGCGCTGTCGTGTC 61.491 66.667 7.64 0.00 38.14 3.67
2263 5267 6.470160 GCTGTCGTGTCTTGTCTTAATTATG 58.530 40.000 0.00 0.00 0.00 1.90
2267 5271 6.090898 GTCGTGTCTTGTCTTAATTATGCTGT 59.909 38.462 0.00 0.00 0.00 4.40
2268 5272 7.274904 GTCGTGTCTTGTCTTAATTATGCTGTA 59.725 37.037 0.00 0.00 0.00 2.74
2326 5345 3.228453 CCAAGGAATGGGATGGAGAATG 58.772 50.000 0.00 0.00 46.27 2.67
2328 5347 2.793017 AGGAATGGGATGGAGAATGGA 58.207 47.619 0.00 0.00 0.00 3.41
2329 5348 3.343210 AGGAATGGGATGGAGAATGGAT 58.657 45.455 0.00 0.00 0.00 3.41
2330 5349 3.075582 AGGAATGGGATGGAGAATGGATG 59.924 47.826 0.00 0.00 0.00 3.51
2331 5350 2.599408 ATGGGATGGAGAATGGATGC 57.401 50.000 0.00 0.00 0.00 3.91
2386 5406 1.690893 AGTCTGAGAGAACAGCAAGCA 59.309 47.619 0.00 0.00 37.75 3.91
2441 5461 6.590292 AGACCACTATTAAGACGTTGATGTTG 59.410 38.462 0.00 0.00 0.00 3.33
2488 5509 5.061560 TGTGAAATTTCAAGTTCAAACACGC 59.938 36.000 22.07 6.11 43.48 5.34
2489 5510 4.264145 TGAAATTTCAAGTTCAAACACGCG 59.736 37.500 18.45 3.53 39.68 6.01
2490 5511 1.540407 TTTCAAGTTCAAACACGCGC 58.460 45.000 5.73 0.00 0.00 6.86
2500 5521 1.461512 CAAACACGCGCAGTACCATTA 59.538 47.619 5.73 0.00 0.00 1.90
2506 5527 1.636988 GCGCAGTACCATTAACGAGT 58.363 50.000 0.30 0.00 0.00 4.18
2511 5532 4.208460 CGCAGTACCATTAACGAGTTATGG 59.792 45.833 15.97 15.97 38.31 2.74
2553 5574 7.022055 TGAATTGTGACGTTTACTGTTTGAT 57.978 32.000 0.00 0.00 0.00 2.57
2554 5575 8.144155 TGAATTGTGACGTTTACTGTTTGATA 57.856 30.769 0.00 0.00 0.00 2.15
2555 5576 8.065407 TGAATTGTGACGTTTACTGTTTGATAC 58.935 33.333 0.00 0.00 0.00 2.24
2556 5577 7.724305 ATTGTGACGTTTACTGTTTGATACT 57.276 32.000 0.00 0.00 0.00 2.12
2557 5578 6.758593 TGTGACGTTTACTGTTTGATACTC 57.241 37.500 0.00 0.00 0.00 2.59
2558 5579 5.693104 TGTGACGTTTACTGTTTGATACTCC 59.307 40.000 0.00 0.00 0.00 3.85
2559 5580 5.119743 GTGACGTTTACTGTTTGATACTCCC 59.880 44.000 0.00 0.00 0.00 4.30
2560 5581 5.011329 TGACGTTTACTGTTTGATACTCCCT 59.989 40.000 0.00 0.00 0.00 4.20
2561 5582 5.476614 ACGTTTACTGTTTGATACTCCCTC 58.523 41.667 0.00 0.00 0.00 4.30
2562 5583 5.245526 ACGTTTACTGTTTGATACTCCCTCT 59.754 40.000 0.00 0.00 0.00 3.69
2563 5584 5.577164 CGTTTACTGTTTGATACTCCCTCTG 59.423 44.000 0.00 0.00 0.00 3.35
2564 5585 6.465084 GTTTACTGTTTGATACTCCCTCTGT 58.535 40.000 0.00 0.00 0.00 3.41
2565 5586 7.576287 CGTTTACTGTTTGATACTCCCTCTGTA 60.576 40.741 0.00 0.00 0.00 2.74
2566 5587 7.786046 TTACTGTTTGATACTCCCTCTGTAA 57.214 36.000 0.00 0.00 0.00 2.41
2567 5588 6.681729 ACTGTTTGATACTCCCTCTGTAAA 57.318 37.500 0.00 0.00 0.00 2.01
2568 5589 6.465084 ACTGTTTGATACTCCCTCTGTAAAC 58.535 40.000 0.00 0.00 0.00 2.01
2569 5590 6.270231 ACTGTTTGATACTCCCTCTGTAAACT 59.730 38.462 0.00 0.00 0.00 2.66
2570 5591 7.453752 ACTGTTTGATACTCCCTCTGTAAACTA 59.546 37.037 0.00 0.00 0.00 2.24
2571 5592 8.197592 TGTTTGATACTCCCTCTGTAAACTAA 57.802 34.615 0.00 0.00 0.00 2.24
2572 5593 8.822805 TGTTTGATACTCCCTCTGTAAACTAAT 58.177 33.333 0.00 0.00 0.00 1.73
2580 5601 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
2582 5603 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
2629 5650 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2630 5651 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2631 5652 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2632 5653 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2633 5654 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2634 5655 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2635 5656 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2636 5657 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2664 5685 5.971895 TCATTGCTGCTTTTGTCTTTTTC 57.028 34.783 0.00 0.00 0.00 2.29
2665 5686 4.503734 TCATTGCTGCTTTTGTCTTTTTCG 59.496 37.500 0.00 0.00 0.00 3.46
2674 5695 5.728621 GCTTTTGTCTTTTTCGTACCTCGTT 60.729 40.000 0.00 0.00 40.80 3.85
2693 5715 9.403583 ACCTCGTTAATGGTAATGTATTTGAAT 57.596 29.630 0.00 0.00 34.36 2.57
2731 5753 9.809096 ACATACTAATAGAACATCACACTCTTG 57.191 33.333 0.00 0.00 0.00 3.02
2734 5756 8.354711 ACTAATAGAACATCACACTCTTGAGA 57.645 34.615 4.49 0.00 0.00 3.27
2759 5781 9.465985 GAGTTAAGACCTAATATTTCTTCGAGG 57.534 37.037 4.51 1.87 31.93 4.63
2764 5786 9.516546 AAGACCTAATATTTCTTCGAGGTTTTT 57.483 29.630 6.76 3.47 37.43 1.94
2802 5824 3.556213 CGTGTGAAGGGGATGTTAAGACA 60.556 47.826 0.00 0.00 40.71 3.41
2850 5872 3.838903 AGGAGACTAGGAACCGAAACATT 59.161 43.478 0.00 0.00 40.61 2.71
2911 5933 4.700365 GCAAAGCGGGGTTGCGAC 62.700 66.667 0.00 0.00 41.74 5.19
2932 5954 0.536724 GCAGCCGGGGAATTGAAATT 59.463 50.000 2.18 0.00 0.00 1.82
2934 5956 1.134729 CAGCCGGGGAATTGAAATTGG 60.135 52.381 2.18 0.00 0.00 3.16
2938 5960 1.203523 CGGGGAATTGAAATTGGCGAA 59.796 47.619 0.00 0.00 0.00 4.70
2945 5967 3.469899 TTGAAATTGGCGAACGATCTG 57.530 42.857 0.00 0.00 0.00 2.90
2955 5977 3.544244 GGCGAACGATCTGAATTAGCAAC 60.544 47.826 0.00 0.00 0.00 4.17
2956 5978 3.837838 GCGAACGATCTGAATTAGCAACG 60.838 47.826 0.00 0.00 0.00 4.10
2957 5979 3.301835 CGAACGATCTGAATTAGCAACGG 60.302 47.826 0.00 0.00 0.00 4.44
2979 6001 6.690704 GGAAAACGATTTAGCAGAAAAAGG 57.309 37.500 0.00 0.00 0.00 3.11
2984 6006 8.710835 AAACGATTTAGCAGAAAAAGGAAAAA 57.289 26.923 0.00 0.00 0.00 1.94
2987 6009 7.862873 ACGATTTAGCAGAAAAAGGAAAAAGAG 59.137 33.333 0.00 0.00 0.00 2.85
2989 6011 3.969899 AGCAGAAAAAGGAAAAAGAGCG 58.030 40.909 0.00 0.00 0.00 5.03
3034 6056 2.457743 ATACTTCGGCGGCCACAACA 62.458 55.000 20.71 0.59 0.00 3.33
3036 6058 2.829003 TTCGGCGGCCACAACAAA 60.829 55.556 20.71 0.00 0.00 2.83
3037 6059 2.343163 CTTCGGCGGCCACAACAAAA 62.343 55.000 20.71 0.43 0.00 2.44
3039 6061 0.889638 TCGGCGGCCACAACAAAATA 60.890 50.000 20.71 0.00 0.00 1.40
3040 6062 0.455972 CGGCGGCCACAACAAAATAG 60.456 55.000 20.71 0.00 0.00 1.73
3041 6063 0.108851 GGCGGCCACAACAAAATAGG 60.109 55.000 15.62 0.00 0.00 2.57
3042 6064 0.885196 GCGGCCACAACAAAATAGGA 59.115 50.000 2.24 0.00 0.00 2.94
3043 6065 1.271102 GCGGCCACAACAAAATAGGAA 59.729 47.619 2.24 0.00 0.00 3.36
3044 6066 2.094234 GCGGCCACAACAAAATAGGAAT 60.094 45.455 2.24 0.00 0.00 3.01
3045 6067 3.510719 CGGCCACAACAAAATAGGAATG 58.489 45.455 2.24 0.00 0.00 2.67
3046 6068 3.675775 CGGCCACAACAAAATAGGAATGG 60.676 47.826 2.24 0.00 0.00 3.16
3047 6069 3.513515 GGCCACAACAAAATAGGAATGGA 59.486 43.478 0.00 0.00 0.00 3.41
3048 6070 4.162131 GGCCACAACAAAATAGGAATGGAT 59.838 41.667 0.00 0.00 0.00 3.41
3049 6071 5.351458 GCCACAACAAAATAGGAATGGATC 58.649 41.667 0.00 0.00 0.00 3.36
3050 6072 5.105392 GCCACAACAAAATAGGAATGGATCA 60.105 40.000 0.00 0.00 0.00 2.92
3051 6073 6.332630 CCACAACAAAATAGGAATGGATCAC 58.667 40.000 0.00 0.00 0.00 3.06
3052 6074 6.153340 CCACAACAAAATAGGAATGGATCACT 59.847 38.462 0.00 0.00 0.00 3.41
3053 6075 7.253422 CACAACAAAATAGGAATGGATCACTC 58.747 38.462 0.00 0.00 0.00 3.51
3054 6076 6.947733 ACAACAAAATAGGAATGGATCACTCA 59.052 34.615 0.00 0.00 0.00 3.41
3055 6077 7.121759 ACAACAAAATAGGAATGGATCACTCAG 59.878 37.037 0.00 0.00 0.00 3.35
3056 6078 6.725364 ACAAAATAGGAATGGATCACTCAGT 58.275 36.000 0.00 0.00 0.00 3.41
3057 6079 7.177878 ACAAAATAGGAATGGATCACTCAGTT 58.822 34.615 0.00 0.00 0.00 3.16
3058 6080 7.337942 ACAAAATAGGAATGGATCACTCAGTTC 59.662 37.037 0.00 0.00 0.00 3.01
3059 6081 6.566079 AATAGGAATGGATCACTCAGTTCA 57.434 37.500 0.00 0.00 0.00 3.18
3060 6082 4.484537 AGGAATGGATCACTCAGTTCAG 57.515 45.455 0.00 0.00 0.00 3.02
3094 6116 3.181493 CGTGCACGTACTAACCTAGGAAT 60.181 47.826 30.50 6.42 34.11 3.01
3107 6129 6.838401 AACCTAGGAATGAATCAGAAGGAT 57.162 37.500 17.98 0.00 38.05 3.24
3129 6151 7.609532 AGGATCAATCAGTTCTTCTTTTTCGAT 59.390 33.333 0.00 0.00 0.00 3.59
3135 6157 5.239306 TCAGTTCTTCTTTTTCGATGTGCAT 59.761 36.000 0.00 0.00 0.00 3.96
3136 6158 5.341462 CAGTTCTTCTTTTTCGATGTGCATG 59.659 40.000 0.00 0.00 0.00 4.06
3137 6159 4.424061 TCTTCTTTTTCGATGTGCATGG 57.576 40.909 0.00 0.00 0.00 3.66
3144 6166 0.607620 TCGATGTGCATGGACTGACA 59.392 50.000 18.75 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.601558 GCGGTCTGTTGTGGACTCTA 59.398 55.000 0.00 0.00 34.47 2.43
71 72 9.023967 GTCAATGTAATTATTCACAAAGGATGC 57.976 33.333 0.00 0.00 32.46 3.91
97 98 1.780806 CATGTATCTGGCTCAGCTCG 58.219 55.000 0.00 0.00 0.00 5.03
104 105 2.422519 CCTTCCTTGCATGTATCTGGCT 60.423 50.000 0.00 0.00 0.00 4.75
127 129 4.262420 GCCACCCTTTGTGTTATTTCATGT 60.262 41.667 0.00 0.00 43.85 3.21
157 161 1.202818 GGAAGCCACCTCTTCTGTTGT 60.203 52.381 3.89 0.00 41.55 3.32
160 164 2.854253 TGGAAGCCACCTCTTCTGT 58.146 52.632 3.89 0.00 41.55 3.41
200 204 0.320771 ACTGCTCCGTCCACATTCAC 60.321 55.000 0.00 0.00 0.00 3.18
245 249 3.068590 TGATCTCGACATATTGCTGCAGA 59.931 43.478 20.43 0.00 0.00 4.26
315 319 2.094803 GTCTCGAGCATCATCGGATCAT 60.095 50.000 7.81 0.00 42.93 2.45
356 360 0.251077 AGGTCTTCTGCCAAAGCCAG 60.251 55.000 9.59 0.00 38.69 4.85
551 557 5.538813 TCCTAGAGTAGAAGCAAACTTGACA 59.461 40.000 0.00 0.00 35.82 3.58
565 571 6.932400 CACATGTCTACCTAGTCCTAGAGTAG 59.068 46.154 16.13 16.13 37.77 2.57
607 613 4.648651 ACATAGTACAAGGTTTGGGTCAC 58.351 43.478 0.00 0.00 34.12 3.67
676 684 0.481128 TTTTGGGGGTCAGTCCTTCC 59.519 55.000 0.00 0.00 36.25 3.46
677 685 2.375014 TTTTTGGGGGTCAGTCCTTC 57.625 50.000 0.00 0.00 36.25 3.46
678 686 2.178984 TGATTTTTGGGGGTCAGTCCTT 59.821 45.455 0.00 0.00 36.25 3.36
679 687 1.786441 TGATTTTTGGGGGTCAGTCCT 59.214 47.619 0.00 0.00 36.25 3.85
680 688 2.171003 CTGATTTTTGGGGGTCAGTCC 58.829 52.381 0.00 0.00 34.76 3.85
681 689 2.876581 ACTGATTTTTGGGGGTCAGTC 58.123 47.619 1.33 0.00 45.93 3.51
683 691 1.812571 CGACTGATTTTTGGGGGTCAG 59.187 52.381 0.00 0.00 42.80 3.51
684 692 1.422024 TCGACTGATTTTTGGGGGTCA 59.578 47.619 0.00 0.00 0.00 4.02
685 693 2.194201 TCGACTGATTTTTGGGGGTC 57.806 50.000 0.00 0.00 0.00 4.46
686 694 2.825532 CAATCGACTGATTTTTGGGGGT 59.174 45.455 0.00 0.00 42.14 4.95
687 695 3.088532 TCAATCGACTGATTTTTGGGGG 58.911 45.455 0.00 0.00 42.14 5.40
688 696 3.119495 GGTCAATCGACTGATTTTTGGGG 60.119 47.826 0.00 0.00 42.14 4.96
689 697 3.119495 GGGTCAATCGACTGATTTTTGGG 60.119 47.826 0.00 0.00 42.14 4.12
690 698 3.426159 CGGGTCAATCGACTGATTTTTGG 60.426 47.826 0.00 0.00 42.14 3.28
691 699 3.188460 ACGGGTCAATCGACTGATTTTTG 59.812 43.478 0.00 0.00 42.14 2.44
692 700 3.408634 ACGGGTCAATCGACTGATTTTT 58.591 40.909 0.00 0.00 42.14 1.94
693 701 3.053831 ACGGGTCAATCGACTGATTTT 57.946 42.857 0.00 0.00 42.14 1.82
694 702 2.762535 ACGGGTCAATCGACTGATTT 57.237 45.000 0.00 0.00 42.14 2.17
695 703 2.481449 GCTACGGGTCAATCGACTGATT 60.481 50.000 0.00 0.00 45.70 2.57
696 704 1.067212 GCTACGGGTCAATCGACTGAT 59.933 52.381 0.00 0.00 42.21 2.90
697 705 0.454600 GCTACGGGTCAATCGACTGA 59.545 55.000 0.00 0.00 42.21 3.41
698 706 0.456221 AGCTACGGGTCAATCGACTG 59.544 55.000 0.00 0.00 42.21 3.51
699 707 1.948145 CTAGCTACGGGTCAATCGACT 59.052 52.381 0.00 0.00 42.21 4.18
700 708 1.674962 ACTAGCTACGGGTCAATCGAC 59.325 52.381 0.00 0.00 41.80 4.20
701 709 1.945394 GACTAGCTACGGGTCAATCGA 59.055 52.381 6.72 0.00 0.00 3.59
702 710 1.001597 GGACTAGCTACGGGTCAATCG 60.002 57.143 12.23 0.00 0.00 3.34
703 711 1.340568 GGGACTAGCTACGGGTCAATC 59.659 57.143 12.23 0.66 0.00 2.67
704 712 1.342674 TGGGACTAGCTACGGGTCAAT 60.343 52.381 12.23 0.00 0.00 2.57
705 713 0.040058 TGGGACTAGCTACGGGTCAA 59.960 55.000 12.23 0.00 0.00 3.18
706 714 0.040058 TTGGGACTAGCTACGGGTCA 59.960 55.000 12.23 0.00 0.00 4.02
707 715 1.188863 TTTGGGACTAGCTACGGGTC 58.811 55.000 3.57 3.57 0.00 4.46
708 716 1.875488 ATTTGGGACTAGCTACGGGT 58.125 50.000 0.00 0.00 0.00 5.28
709 717 4.618920 AATATTTGGGACTAGCTACGGG 57.381 45.455 0.00 0.00 0.00 5.28
710 718 6.725246 CAAAAATATTTGGGACTAGCTACGG 58.275 40.000 0.39 0.00 41.81 4.02
916 924 9.772605 AGGAATGGATTGGATTTGCATATTATA 57.227 29.630 0.00 0.00 0.00 0.98
917 925 8.537016 CAGGAATGGATTGGATTTGCATATTAT 58.463 33.333 0.00 0.00 0.00 1.28
918 926 7.729431 TCAGGAATGGATTGGATTTGCATATTA 59.271 33.333 0.00 0.00 0.00 0.98
919 927 6.555738 TCAGGAATGGATTGGATTTGCATATT 59.444 34.615 0.00 0.00 0.00 1.28
967 983 3.420943 GCACGTGCTTGTTCAGGT 58.579 55.556 32.55 0.00 38.21 4.00
989 1005 0.316522 ACAGCCCATCTCGATGATCG 59.683 55.000 8.83 8.83 41.20 3.69
1005 1021 3.753434 AGCGGCGTCCTCTCACAG 61.753 66.667 9.37 0.00 0.00 3.66
1335 1351 1.215382 CGTCTCGTTGAGGATGCCA 59.785 57.895 0.00 0.00 32.72 4.92
1353 1369 1.808945 TGTCTTACGAAGAGGGACGAC 59.191 52.381 0.00 0.00 38.41 4.34
1420 1443 1.582502 GATCAAACCGTAGCGTTCTCG 59.417 52.381 0.00 0.00 40.37 4.04
1423 1446 3.000322 CAGATGATCAAACCGTAGCGTTC 60.000 47.826 0.00 0.00 0.00 3.95
1430 1453 2.010145 CGGTCAGATGATCAAACCGT 57.990 50.000 22.61 0.53 45.88 4.83
1437 1460 0.312416 CGGGTCTCGGTCAGATGATC 59.688 60.000 0.00 0.00 32.08 2.92
1448 1471 2.885644 CAATCGCCACGGGTCTCG 60.886 66.667 0.00 0.00 45.88 4.04
1456 2463 2.577644 CATGCACGCAATCGCCAC 60.578 61.111 0.00 0.00 39.84 5.01
1470 2477 1.609072 CCTCTGGATCTGCAATGCATG 59.391 52.381 8.91 3.24 38.13 4.06
1471 2478 1.214673 ACCTCTGGATCTGCAATGCAT 59.785 47.619 8.91 0.00 38.13 3.96
1472 2479 0.622136 ACCTCTGGATCTGCAATGCA 59.378 50.000 7.99 7.99 36.92 3.96
1473 2480 1.674962 GAACCTCTGGATCTGCAATGC 59.325 52.381 0.00 0.00 0.00 3.56
1474 2481 3.204526 GAGAACCTCTGGATCTGCAATG 58.795 50.000 1.09 0.00 34.96 2.82
1475 2482 2.158986 CGAGAACCTCTGGATCTGCAAT 60.159 50.000 1.09 0.00 34.96 3.56
1745 3729 2.434359 CCGAAGAAGGTGACCCGC 60.434 66.667 0.00 0.00 35.12 6.13
1931 4928 3.693085 TGATGTCCTGGAAGTAGTCGTAC 59.307 47.826 0.00 0.00 0.00 3.67
2196 5193 3.665675 ATCTTGGTGAGCGGCGTCC 62.666 63.158 9.37 7.16 0.00 4.79
2212 5213 2.908634 GCATGTGTAAGCGTATGCATC 58.091 47.619 10.11 0.00 46.23 3.91
2217 5218 2.221169 CCCATGCATGTGTAAGCGTAT 58.779 47.619 24.58 0.00 0.00 3.06
2225 5226 3.445687 CAGCGCCCATGCATGTGT 61.446 61.111 24.58 2.07 37.32 3.72
2249 5253 7.923888 AGCACATACAGCATAATTAAGACAAG 58.076 34.615 0.00 0.00 0.00 3.16
2263 5267 4.494199 GGTTACAATCGAAGCACATACAGC 60.494 45.833 0.00 0.00 0.00 4.40
2267 5271 6.751514 ATTTGGTTACAATCGAAGCACATA 57.248 33.333 0.00 0.00 36.29 2.29
2268 5272 5.643379 ATTTGGTTACAATCGAAGCACAT 57.357 34.783 0.00 0.00 36.29 3.21
2326 5345 1.003545 GACACGTACATGCATGCATCC 60.004 52.381 30.07 18.67 33.90 3.51
2328 5347 1.016627 GGACACGTACATGCATGCAT 58.983 50.000 27.46 27.46 37.08 3.96
2329 5348 0.036483 AGGACACGTACATGCATGCA 60.036 50.000 26.53 25.04 0.00 3.96
2330 5349 0.374758 CAGGACACGTACATGCATGC 59.625 55.000 26.53 11.82 0.00 4.06
2331 5350 1.009078 CCAGGACACGTACATGCATG 58.991 55.000 25.09 25.09 0.00 4.06
2369 5389 1.805345 CCTTGCTTGCTGTTCTCTCAG 59.195 52.381 0.00 0.00 38.35 3.35
2386 5406 8.204903 AGAGTTAAGATAGATGCATGATCCTT 57.795 34.615 2.46 5.13 0.00 3.36
2441 5461 3.932710 TGCCAATAGAACATCAACGTCTC 59.067 43.478 0.00 0.00 0.00 3.36
2447 5468 6.587206 TTTCACATGCCAATAGAACATCAA 57.413 33.333 0.00 0.00 0.00 2.57
2488 5509 4.208460 CCATAACTCGTTAATGGTACTGCG 59.792 45.833 0.00 0.00 0.00 5.18
2489 5510 5.353938 TCCATAACTCGTTAATGGTACTGC 58.646 41.667 13.19 0.00 34.23 4.40
2490 5511 7.837202 TTTCCATAACTCGTTAATGGTACTG 57.163 36.000 13.19 0.60 34.23 2.74
2500 5521 7.169140 GCTGAATTTGTTTTTCCATAACTCGTT 59.831 33.333 0.00 0.00 0.00 3.85
2506 5527 7.448420 TCATGGCTGAATTTGTTTTTCCATAA 58.552 30.769 0.00 0.00 32.37 1.90
2554 5575 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
2556 5577 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
2603 5624 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2604 5625 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2605 5626 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2606 5627 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2607 5628 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2608 5629 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2609 5630 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2610 5631 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2611 5632 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2612 5633 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2613 5634 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2616 5637 9.819754 AATAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
2617 5638 9.289782 GAATAGTACTCCCTCCGTAAACTAATA 57.710 37.037 0.00 0.00 0.00 0.98
2618 5639 7.781693 TGAATAGTACTCCCTCCGTAAACTAAT 59.218 37.037 0.00 0.00 0.00 1.73
2619 5640 7.118723 TGAATAGTACTCCCTCCGTAAACTAA 58.881 38.462 0.00 0.00 0.00 2.24
2620 5641 6.662755 TGAATAGTACTCCCTCCGTAAACTA 58.337 40.000 0.00 0.00 0.00 2.24
2621 5642 5.513233 TGAATAGTACTCCCTCCGTAAACT 58.487 41.667 0.00 0.00 0.00 2.66
2622 5643 5.841957 TGAATAGTACTCCCTCCGTAAAC 57.158 43.478 0.00 0.00 0.00 2.01
2623 5644 6.684613 GCAATGAATAGTACTCCCTCCGTAAA 60.685 42.308 0.00 0.00 0.00 2.01
2624 5645 5.221382 GCAATGAATAGTACTCCCTCCGTAA 60.221 44.000 0.00 0.00 0.00 3.18
2625 5646 4.280174 GCAATGAATAGTACTCCCTCCGTA 59.720 45.833 0.00 0.00 0.00 4.02
2626 5647 3.069729 GCAATGAATAGTACTCCCTCCGT 59.930 47.826 0.00 0.00 0.00 4.69
2627 5648 3.322254 AGCAATGAATAGTACTCCCTCCG 59.678 47.826 0.00 0.00 0.00 4.63
2628 5649 4.636249 CAGCAATGAATAGTACTCCCTCC 58.364 47.826 0.00 0.00 0.00 4.30
2629 5650 4.061596 GCAGCAATGAATAGTACTCCCTC 58.938 47.826 0.00 0.00 0.00 4.30
2630 5651 3.713764 AGCAGCAATGAATAGTACTCCCT 59.286 43.478 0.00 0.00 0.00 4.20
2631 5652 4.078639 AGCAGCAATGAATAGTACTCCC 57.921 45.455 0.00 0.00 0.00 4.30
2632 5653 6.127897 ACAAAAGCAGCAATGAATAGTACTCC 60.128 38.462 0.00 0.00 0.00 3.85
2633 5654 6.846350 ACAAAAGCAGCAATGAATAGTACTC 58.154 36.000 0.00 0.00 0.00 2.59
2634 5655 6.656693 AGACAAAAGCAGCAATGAATAGTACT 59.343 34.615 0.00 0.00 0.00 2.73
2635 5656 6.846350 AGACAAAAGCAGCAATGAATAGTAC 58.154 36.000 0.00 0.00 0.00 2.73
2636 5657 7.452880 AAGACAAAAGCAGCAATGAATAGTA 57.547 32.000 0.00 0.00 0.00 1.82
2665 5686 9.316730 TCAAATACATTACCATTAACGAGGTAC 57.683 33.333 0.00 0.00 39.95 3.34
2733 5755 9.465985 CCTCGAAGAAATATTAGGTCTTAACTC 57.534 37.037 1.69 0.00 34.09 3.01
2734 5756 8.979534 ACCTCGAAGAAATATTAGGTCTTAACT 58.020 33.333 0.29 0.00 31.78 2.24
2735 5757 9.597170 AACCTCGAAGAAATATTAGGTCTTAAC 57.403 33.333 5.93 0.00 36.34 2.01
2770 5792 3.954904 TCCCCTTCACACGAAATTTCAAA 59.045 39.130 17.99 3.57 0.00 2.69
2771 5793 3.556999 TCCCCTTCACACGAAATTTCAA 58.443 40.909 17.99 3.68 0.00 2.69
2772 5794 3.216187 TCCCCTTCACACGAAATTTCA 57.784 42.857 17.99 0.00 0.00 2.69
2777 5799 2.649531 AACATCCCCTTCACACGAAA 57.350 45.000 0.00 0.00 0.00 3.46
2782 5804 3.650942 ACTGTCTTAACATCCCCTTCACA 59.349 43.478 0.00 0.00 34.13 3.58
2802 5824 1.976132 ATAGCCGGCACATCAGCACT 61.976 55.000 31.54 5.89 35.83 4.40
2843 5865 8.867112 TTCGAGGTACATCATAGTAATGTTTC 57.133 34.615 8.44 0.00 38.31 2.78
2846 5868 7.015292 ACCATTCGAGGTACATCATAGTAATGT 59.985 37.037 8.44 0.00 40.98 2.71
2850 5872 6.570672 GACCATTCGAGGTACATCATAGTA 57.429 41.667 8.44 0.00 43.38 1.82
2878 5900 3.869912 GCTTTGCCCTCTGTCTATCAACA 60.870 47.826 0.00 0.00 0.00 3.33
2881 5903 1.134699 CGCTTTGCCCTCTGTCTATCA 60.135 52.381 0.00 0.00 0.00 2.15
2882 5904 1.576356 CGCTTTGCCCTCTGTCTATC 58.424 55.000 0.00 0.00 0.00 2.08
2885 5907 2.348998 CCGCTTTGCCCTCTGTCT 59.651 61.111 0.00 0.00 0.00 3.41
2919 5941 2.616960 GTTCGCCAATTTCAATTCCCC 58.383 47.619 0.00 0.00 0.00 4.81
2932 5954 2.201732 GCTAATTCAGATCGTTCGCCA 58.798 47.619 0.00 0.00 0.00 5.69
2934 5956 3.598330 GTTGCTAATTCAGATCGTTCGC 58.402 45.455 0.00 0.00 0.00 4.70
2938 5960 3.520290 TCCGTTGCTAATTCAGATCGT 57.480 42.857 0.00 0.00 0.00 3.73
2945 5967 6.021704 GCTAAATCGTTTTCCGTTGCTAATTC 60.022 38.462 0.00 0.00 37.94 2.17
2955 5977 5.342259 CCTTTTTCTGCTAAATCGTTTTCCG 59.658 40.000 0.00 0.00 38.13 4.30
2956 5978 6.443792 TCCTTTTTCTGCTAAATCGTTTTCC 58.556 36.000 0.00 0.00 0.00 3.13
2957 5979 7.924103 TTCCTTTTTCTGCTAAATCGTTTTC 57.076 32.000 0.00 0.00 0.00 2.29
2972 5994 2.051423 CGGCGCTCTTTTTCCTTTTTC 58.949 47.619 7.64 0.00 0.00 2.29
2977 5999 2.035442 GCTCGGCGCTCTTTTTCCT 61.035 57.895 7.64 0.00 35.14 3.36
2998 6020 1.448677 GTATCGTCTCTTCGCGATTGC 59.551 52.381 10.88 0.00 44.17 3.56
3017 6039 4.555709 TGTTGTGGCCGCCGAAGT 62.556 61.111 15.15 0.00 0.00 3.01
3034 6056 7.405292 TGAACTGAGTGATCCATTCCTATTTT 58.595 34.615 0.00 0.00 0.00 1.82
3036 6058 6.157645 ACTGAACTGAGTGATCCATTCCTATT 59.842 38.462 0.00 0.00 0.00 1.73
3037 6059 5.664908 ACTGAACTGAGTGATCCATTCCTAT 59.335 40.000 0.00 0.00 0.00 2.57
3039 6061 3.843027 ACTGAACTGAGTGATCCATTCCT 59.157 43.478 0.00 0.00 0.00 3.36
3040 6062 4.213564 ACTGAACTGAGTGATCCATTCC 57.786 45.455 0.00 0.00 0.00 3.01
3041 6063 6.566197 AAAACTGAACTGAGTGATCCATTC 57.434 37.500 0.00 0.00 0.00 2.67
3042 6064 6.966534 AAAAACTGAACTGAGTGATCCATT 57.033 33.333 0.00 0.00 0.00 3.16
3079 6101 8.145122 CCTTCTGATTCATTCCTAGGTTAGTAC 58.855 40.741 9.08 0.00 0.00 2.73
3088 6110 8.037723 TGATTGATCCTTCTGATTCATTCCTA 57.962 34.615 0.00 0.00 32.41 2.94
3094 6116 6.955364 AGAACTGATTGATCCTTCTGATTCA 58.045 36.000 0.00 0.00 32.41 2.57
3107 6129 7.355017 CACATCGAAAAAGAAGAACTGATTGA 58.645 34.615 0.00 0.00 0.00 2.57
3129 6151 2.636647 TTCTTGTCAGTCCATGCACA 57.363 45.000 0.00 0.00 0.00 4.57
3135 6157 5.047566 TCAATTCCTTTCTTGTCAGTCCA 57.952 39.130 0.00 0.00 0.00 4.02
3136 6158 5.124617 GGATCAATTCCTTTCTTGTCAGTCC 59.875 44.000 0.00 0.00 41.78 3.85
3137 6159 5.124617 GGGATCAATTCCTTTCTTGTCAGTC 59.875 44.000 0.00 0.00 44.75 3.51
3144 6166 3.012161 AGCCAGGGATCAATTCCTTTCTT 59.988 43.478 0.00 0.00 44.75 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.