Multiple sequence alignment - TraesCS7B01G093600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G093600 chr7B 100.000 3426 0 0 1 3426 107338795 107335370 0.000000e+00 6327
1 TraesCS7B01G093600 chr7B 95.107 797 37 2 1 796 418516738 418517533 0.000000e+00 1254
2 TraesCS7B01G093600 chr7B 94.730 797 40 2 1 796 326827004 326826209 0.000000e+00 1238
3 TraesCS7B01G093600 chr7B 94.706 340 18 0 3087 3426 47903999 47903660 2.340000e-146 529
4 TraesCS7B01G093600 chr7B 93.948 347 20 1 3081 3426 166909550 166909896 1.090000e-144 523
5 TraesCS7B01G093600 chr7A 92.560 1492 90 12 1612 3087 145033440 145031954 0.000000e+00 2121
6 TraesCS7B01G093600 chr7A 94.444 774 40 3 795 1567 145034214 145033443 0.000000e+00 1188
7 TraesCS7B01G093600 chr7D 91.683 1491 85 18 1612 3086 142699614 142698147 0.000000e+00 2030
8 TraesCS7B01G093600 chr7D 94.955 773 34 2 795 1567 142700384 142699617 0.000000e+00 1206
9 TraesCS7B01G093600 chr1B 88.293 1324 123 21 1612 2914 492098490 492099802 0.000000e+00 1557
10 TraesCS7B01G093600 chr1B 94.618 799 35 5 1 796 191348784 191347991 0.000000e+00 1230
11 TraesCS7B01G093600 chr1B 89.533 793 60 11 795 1567 492097698 492098487 0.000000e+00 983
12 TraesCS7B01G093600 chr1D 88.097 1319 121 19 1612 2914 367725735 367727033 0.000000e+00 1533
13 TraesCS7B01G093600 chr1D 89.394 792 62 10 795 1567 367724944 367725732 0.000000e+00 977
14 TraesCS7B01G093600 chr2B 95.107 797 36 3 1 796 576794598 576793804 0.000000e+00 1253
15 TraesCS7B01G093600 chr2B 73.585 1007 189 49 1938 2903 794081935 794082905 7.140000e-82 315
16 TraesCS7B01G093600 chr6B 94.994 799 35 5 1 796 3971777 3970981 0.000000e+00 1249
17 TraesCS7B01G093600 chr6B 94.975 796 35 4 1 796 16020013 16019223 0.000000e+00 1243
18 TraesCS7B01G093600 chr6B 94.862 798 34 4 1 796 15973584 15972792 0.000000e+00 1240
19 TraesCS7B01G093600 chr3B 94.730 797 40 2 1 796 285648148 285647353 0.000000e+00 1238
20 TraesCS7B01G093600 chr3B 95.000 340 16 1 3087 3426 377932552 377932214 1.810000e-147 532
21 TraesCS7B01G093600 chr3B 94.706 340 18 0 3087 3426 401839819 401840158 2.340000e-146 529
22 TraesCS7B01G093600 chr3B 94.461 343 16 2 3087 3426 215838075 215837733 3.030000e-145 525
23 TraesCS7B01G093600 chrUn 94.750 800 33 4 1 796 345664871 345665665 0.000000e+00 1236
24 TraesCS7B01G093600 chr5B 95.294 340 16 0 3087 3426 190256295 190256634 1.080000e-149 540
25 TraesCS7B01G093600 chr5B 94.412 340 19 0 3087 3426 144079846 144080185 1.090000e-144 523
26 TraesCS7B01G093600 chr5B 94.412 340 19 0 3087 3426 212167852 212167513 1.090000e-144 523
27 TraesCS7B01G093600 chr4B 94.706 340 18 0 3087 3426 527899978 527900317 2.340000e-146 529
28 TraesCS7B01G093600 chr2D 73.878 1003 185 49 1938 2900 636017681 636018646 2.550000e-86 329
29 TraesCS7B01G093600 chr2A 73.320 1012 197 51 1941 2915 761211149 761210174 4.300000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G093600 chr7B 107335370 107338795 3425 True 6327.0 6327 100.0000 1 3426 1 chr7B.!!$R2 3425
1 TraesCS7B01G093600 chr7B 418516738 418517533 795 False 1254.0 1254 95.1070 1 796 1 chr7B.!!$F2 795
2 TraesCS7B01G093600 chr7B 326826209 326827004 795 True 1238.0 1238 94.7300 1 796 1 chr7B.!!$R3 795
3 TraesCS7B01G093600 chr7A 145031954 145034214 2260 True 1654.5 2121 93.5020 795 3087 2 chr7A.!!$R1 2292
4 TraesCS7B01G093600 chr7D 142698147 142700384 2237 True 1618.0 2030 93.3190 795 3086 2 chr7D.!!$R1 2291
5 TraesCS7B01G093600 chr1B 492097698 492099802 2104 False 1270.0 1557 88.9130 795 2914 2 chr1B.!!$F1 2119
6 TraesCS7B01G093600 chr1B 191347991 191348784 793 True 1230.0 1230 94.6180 1 796 1 chr1B.!!$R1 795
7 TraesCS7B01G093600 chr1D 367724944 367727033 2089 False 1255.0 1533 88.7455 795 2914 2 chr1D.!!$F1 2119
8 TraesCS7B01G093600 chr2B 576793804 576794598 794 True 1253.0 1253 95.1070 1 796 1 chr2B.!!$R1 795
9 TraesCS7B01G093600 chr2B 794081935 794082905 970 False 315.0 315 73.5850 1938 2903 1 chr2B.!!$F1 965
10 TraesCS7B01G093600 chr6B 3970981 3971777 796 True 1249.0 1249 94.9940 1 796 1 chr6B.!!$R1 795
11 TraesCS7B01G093600 chr6B 16019223 16020013 790 True 1243.0 1243 94.9750 1 796 1 chr6B.!!$R3 795
12 TraesCS7B01G093600 chr6B 15972792 15973584 792 True 1240.0 1240 94.8620 1 796 1 chr6B.!!$R2 795
13 TraesCS7B01G093600 chr3B 285647353 285648148 795 True 1238.0 1238 94.7300 1 796 1 chr3B.!!$R2 795
14 TraesCS7B01G093600 chrUn 345664871 345665665 794 False 1236.0 1236 94.7500 1 796 1 chrUn.!!$F1 795
15 TraesCS7B01G093600 chr2D 636017681 636018646 965 False 329.0 329 73.8780 1938 2900 1 chr2D.!!$F1 962
16 TraesCS7B01G093600 chr2A 761210174 761211149 975 True 305.0 305 73.3200 1941 2915 1 chr2A.!!$R1 974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 361 0.035739 ATGGTACCGGCGAAAGTTGT 59.964 50.0 9.3 0.0 0.00 3.32 F
516 525 0.426022 AGGGGAAGGGTTGGTAGGAT 59.574 55.0 0.0 0.0 0.00 3.24 F
1339 1369 0.458543 CGACGATGTCAGTGGGGAAG 60.459 60.0 0.0 0.0 32.09 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1437 0.036306 ATGTTCCCTGTCGGTCCAAC 59.964 55.000 0.00 0.0 0.00 3.77 R
2182 2219 1.003233 ACACCCAATCCTCGGAGAAAC 59.997 52.381 6.58 0.0 34.09 2.78 R
3148 3221 0.104120 AAGTACTGTGCGTGTCAGCA 59.896 50.000 0.00 0.0 45.96 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
312 315 4.752621 TGATAGGTAGGTATGGTGGCTA 57.247 45.455 0.00 0.00 0.00 3.93
324 327 4.591321 ATGGTGGCTATTTTGAGGAAGA 57.409 40.909 0.00 0.00 0.00 2.87
358 361 0.035739 ATGGTACCGGCGAAAGTTGT 59.964 50.000 9.30 0.00 0.00 3.32
516 525 0.426022 AGGGGAAGGGTTGGTAGGAT 59.574 55.000 0.00 0.00 0.00 3.24
679 690 4.225042 TCACAACTACCCAACTAGCATGAT 59.775 41.667 0.00 0.00 0.00 2.45
790 801 1.006813 ACCCAACTTGGATGCCCATA 58.993 50.000 9.61 0.00 43.12 2.74
921 932 3.776969 AGTTGGATTCCATCACTGCTCTA 59.223 43.478 14.68 0.00 31.53 2.43
940 970 1.152440 CTCCTCGCCCTCCCATACT 60.152 63.158 0.00 0.00 0.00 2.12
955 985 7.217906 CCTCCCATACTTACATTTAGAGTTCC 58.782 42.308 0.00 0.00 0.00 3.62
962 992 7.981102 ACTTACATTTAGAGTTCCCACTTTC 57.019 36.000 0.00 0.00 31.22 2.62
1062 1092 4.214310 TCACTGGGTTCAACAACAATGAT 58.786 39.130 0.00 0.00 33.70 2.45
1063 1093 5.380900 TCACTGGGTTCAACAACAATGATA 58.619 37.500 0.00 0.00 33.70 2.15
1166 1196 7.617225 ACTATGCAACAGGTAATGTACTTGTA 58.383 34.615 3.90 0.00 46.54 2.41
1300 1330 4.011023 CTCCATAGGAGGGTATACGAGTG 58.989 52.174 5.13 0.00 45.43 3.51
1339 1369 0.458543 CGACGATGTCAGTGGGGAAG 60.459 60.000 0.00 0.00 32.09 3.46
1359 1389 1.280421 GAAGGTGAAGGTGCCAGAGAT 59.720 52.381 0.00 0.00 0.00 2.75
1399 1429 0.458543 CAGTGATCGTACCAAGCGCT 60.459 55.000 2.64 2.64 0.00 5.92
1407 1437 1.654105 CGTACCAAGCGCTAGAAAGTG 59.346 52.381 12.05 3.41 36.25 3.16
1576 1608 9.754382 ATAATAATTCAATGCTTGTGTTCATCC 57.246 29.630 0.00 0.00 0.00 3.51
1577 1609 5.733620 AATTCAATGCTTGTGTTCATCCT 57.266 34.783 0.00 0.00 0.00 3.24
1578 1610 5.733620 ATTCAATGCTTGTGTTCATCCTT 57.266 34.783 0.00 0.00 0.00 3.36
1579 1611 5.534207 TTCAATGCTTGTGTTCATCCTTT 57.466 34.783 0.00 0.00 0.00 3.11
1580 1612 5.534207 TCAATGCTTGTGTTCATCCTTTT 57.466 34.783 0.00 0.00 0.00 2.27
1581 1613 6.647334 TCAATGCTTGTGTTCATCCTTTTA 57.353 33.333 0.00 0.00 0.00 1.52
1582 1614 7.230849 TCAATGCTTGTGTTCATCCTTTTAT 57.769 32.000 0.00 0.00 0.00 1.40
1583 1615 7.669427 TCAATGCTTGTGTTCATCCTTTTATT 58.331 30.769 0.00 0.00 0.00 1.40
1584 1616 8.149647 TCAATGCTTGTGTTCATCCTTTTATTT 58.850 29.630 0.00 0.00 0.00 1.40
1585 1617 7.894376 ATGCTTGTGTTCATCCTTTTATTTG 57.106 32.000 0.00 0.00 0.00 2.32
1586 1618 6.815089 TGCTTGTGTTCATCCTTTTATTTGT 58.185 32.000 0.00 0.00 0.00 2.83
1587 1619 6.922957 TGCTTGTGTTCATCCTTTTATTTGTC 59.077 34.615 0.00 0.00 0.00 3.18
1588 1620 6.366061 GCTTGTGTTCATCCTTTTATTTGTCC 59.634 38.462 0.00 0.00 0.00 4.02
1589 1621 7.595819 TTGTGTTCATCCTTTTATTTGTCCT 57.404 32.000 0.00 0.00 0.00 3.85
1590 1622 7.595819 TGTGTTCATCCTTTTATTTGTCCTT 57.404 32.000 0.00 0.00 0.00 3.36
1591 1623 8.017418 TGTGTTCATCCTTTTATTTGTCCTTT 57.983 30.769 0.00 0.00 0.00 3.11
1592 1624 8.482128 TGTGTTCATCCTTTTATTTGTCCTTTT 58.518 29.630 0.00 0.00 0.00 2.27
1593 1625 9.974980 GTGTTCATCCTTTTATTTGTCCTTTTA 57.025 29.630 0.00 0.00 0.00 1.52
1600 1632 9.990360 TCCTTTTATTTGTCCTTTTATTTGTCC 57.010 29.630 0.00 0.00 0.00 4.02
1601 1633 9.996554 CCTTTTATTTGTCCTTTTATTTGTCCT 57.003 29.630 0.00 0.00 0.00 3.85
1743 1776 5.560722 TCACTAGATTGTTCAACTTCCCA 57.439 39.130 0.00 0.00 0.00 4.37
1749 1782 9.533831 ACTAGATTGTTCAACTTCCCATTAAAT 57.466 29.630 0.00 0.00 0.00 1.40
1805 1838 7.205297 AGTATGCATCAATAGTTTTTCATGCC 58.795 34.615 0.19 0.00 36.59 4.40
1909 1942 6.262944 ACTCATGTACACTCATTTGCTTTCAA 59.737 34.615 0.00 0.00 0.00 2.69
1959 1992 3.565307 ACAGTTGTCATGGACATGGTTT 58.435 40.909 11.98 0.00 42.40 3.27
2180 2217 5.435686 TCTCTTACATGGTTATGCAAGGT 57.564 39.130 0.00 0.00 37.96 3.50
2182 2219 5.647658 TCTCTTACATGGTTATGCAAGGTTG 59.352 40.000 0.00 0.00 37.96 3.77
2315 2352 5.843469 TCAGGAGGATAAAGAAAGGAGAGA 58.157 41.667 0.00 0.00 0.00 3.10
2329 2366 0.107945 GAGAGATGGAAAGGCAGCGT 60.108 55.000 0.00 0.00 0.00 5.07
2357 2394 3.577649 TCAACGACCTAGAGCTCAAAG 57.422 47.619 17.77 12.57 0.00 2.77
2386 2423 8.076178 GTCAAACCATGGATAATCGGAAATAAG 58.924 37.037 21.47 0.00 0.00 1.73
2419 2468 3.515502 ACCGATCTCTCATCTTTGACCAA 59.484 43.478 0.00 0.00 0.00 3.67
2423 2472 5.641209 CGATCTCTCATCTTTGACCAAAACT 59.359 40.000 0.00 0.00 0.00 2.66
2692 2759 5.522456 TGTCCACTGTGTTAACTACTTACG 58.478 41.667 7.22 0.00 0.00 3.18
2693 2760 4.383948 GTCCACTGTGTTAACTACTTACGC 59.616 45.833 7.22 0.00 0.00 4.42
2704 2771 3.605634 ACTACTTACGCCATGCATTGAA 58.394 40.909 1.13 0.00 0.00 2.69
2876 2948 9.758651 GAAGTATACATTTTGGTTTGGTTCTTT 57.241 29.630 5.50 0.00 0.00 2.52
2942 3014 8.455903 AATATAGCTACAAGCATCACAAATGT 57.544 30.769 0.00 0.00 45.56 2.71
2949 3021 7.756722 GCTACAAGCATCACAAATGTAGATTTT 59.243 33.333 13.70 0.00 43.80 1.82
2966 3038 8.041323 TGTAGATTTTCCCTCTTGTATCTGTTC 58.959 37.037 0.00 0.00 0.00 3.18
2976 3048 2.408565 TGTATCTGTTCCCCCTCATCC 58.591 52.381 0.00 0.00 0.00 3.51
2986 3058 1.319799 CCCTCATCCTCCCCTCCTT 59.680 63.158 0.00 0.00 0.00 3.36
3010 3082 1.972588 ACCTTTCCAGCCTCATACCT 58.027 50.000 0.00 0.00 0.00 3.08
3011 3083 1.840635 ACCTTTCCAGCCTCATACCTC 59.159 52.381 0.00 0.00 0.00 3.85
3019 3091 3.501202 CCAGCCTCATACCTCTCTATGGA 60.501 52.174 0.00 0.00 0.00 3.41
3024 3096 6.331307 AGCCTCATACCTCTCTATGGATTTTT 59.669 38.462 0.00 0.00 0.00 1.94
3031 3103 7.277405 ACCTCTCTATGGATTTTTCTCCTTT 57.723 36.000 0.00 0.00 36.20 3.11
3042 3114 6.818644 GGATTTTTCTCCTTTCCCTTTAATGC 59.181 38.462 0.00 0.00 32.18 3.56
3052 3124 4.156455 TCCCTTTAATGCCAGCTCTAAG 57.844 45.455 0.00 0.00 0.00 2.18
3091 3164 1.204146 TGGAGGAAGGTCCATGTAGC 58.796 55.000 0.00 0.00 41.99 3.58
3092 3165 1.204146 GGAGGAAGGTCCATGTAGCA 58.796 55.000 0.00 0.00 39.61 3.49
3093 3166 1.559682 GGAGGAAGGTCCATGTAGCAA 59.440 52.381 0.00 0.00 39.61 3.91
3094 3167 2.633488 GAGGAAGGTCCATGTAGCAAC 58.367 52.381 0.00 0.00 39.61 4.17
3095 3168 1.282157 AGGAAGGTCCATGTAGCAACC 59.718 52.381 0.00 0.00 39.61 3.77
3096 3169 1.004277 GGAAGGTCCATGTAGCAACCA 59.996 52.381 0.00 0.00 36.28 3.67
3097 3170 2.554344 GGAAGGTCCATGTAGCAACCAA 60.554 50.000 0.00 0.00 36.28 3.67
3098 3171 2.969821 AGGTCCATGTAGCAACCAAA 57.030 45.000 0.00 0.00 34.09 3.28
3099 3172 2.514803 AGGTCCATGTAGCAACCAAAC 58.485 47.619 0.00 0.00 34.09 2.93
3100 3173 1.544246 GGTCCATGTAGCAACCAAACC 59.456 52.381 0.00 0.00 0.00 3.27
3101 3174 2.514803 GTCCATGTAGCAACCAAACCT 58.485 47.619 0.00 0.00 0.00 3.50
3102 3175 2.488153 GTCCATGTAGCAACCAAACCTC 59.512 50.000 0.00 0.00 0.00 3.85
3103 3176 2.107378 TCCATGTAGCAACCAAACCTCA 59.893 45.455 0.00 0.00 0.00 3.86
3104 3177 2.890311 CCATGTAGCAACCAAACCTCAA 59.110 45.455 0.00 0.00 0.00 3.02
3105 3178 3.320541 CCATGTAGCAACCAAACCTCAAA 59.679 43.478 0.00 0.00 0.00 2.69
3106 3179 4.298332 CATGTAGCAACCAAACCTCAAAC 58.702 43.478 0.00 0.00 0.00 2.93
3107 3180 3.626930 TGTAGCAACCAAACCTCAAACT 58.373 40.909 0.00 0.00 0.00 2.66
3108 3181 3.380004 TGTAGCAACCAAACCTCAAACTG 59.620 43.478 0.00 0.00 0.00 3.16
3109 3182 2.456577 AGCAACCAAACCTCAAACTGT 58.543 42.857 0.00 0.00 0.00 3.55
3110 3183 2.427095 AGCAACCAAACCTCAAACTGTC 59.573 45.455 0.00 0.00 0.00 3.51
3111 3184 2.427095 GCAACCAAACCTCAAACTGTCT 59.573 45.455 0.00 0.00 0.00 3.41
3112 3185 3.630312 GCAACCAAACCTCAAACTGTCTA 59.370 43.478 0.00 0.00 0.00 2.59
3113 3186 4.261197 GCAACCAAACCTCAAACTGTCTAG 60.261 45.833 0.00 0.00 0.00 2.43
3114 3187 4.772886 ACCAAACCTCAAACTGTCTAGT 57.227 40.909 0.00 0.00 39.32 2.57
3115 3188 4.704965 ACCAAACCTCAAACTGTCTAGTC 58.295 43.478 0.00 0.00 35.69 2.59
3116 3189 4.409247 ACCAAACCTCAAACTGTCTAGTCT 59.591 41.667 0.00 0.00 35.69 3.24
3117 3190 4.991687 CCAAACCTCAAACTGTCTAGTCTC 59.008 45.833 0.00 0.00 35.69 3.36
3118 3191 5.221541 CCAAACCTCAAACTGTCTAGTCTCT 60.222 44.000 0.00 0.00 35.69 3.10
3119 3192 5.461032 AACCTCAAACTGTCTAGTCTCTG 57.539 43.478 0.00 0.00 35.69 3.35
3120 3193 4.475345 ACCTCAAACTGTCTAGTCTCTGT 58.525 43.478 0.00 0.00 35.69 3.41
3121 3194 4.279671 ACCTCAAACTGTCTAGTCTCTGTG 59.720 45.833 0.00 0.00 35.69 3.66
3122 3195 4.233789 CTCAAACTGTCTAGTCTCTGTGC 58.766 47.826 0.00 0.00 35.69 4.57
3123 3196 3.636764 TCAAACTGTCTAGTCTCTGTGCA 59.363 43.478 0.00 0.00 35.69 4.57
3124 3197 4.281941 TCAAACTGTCTAGTCTCTGTGCAT 59.718 41.667 0.00 0.00 35.69 3.96
3125 3198 4.448537 AACTGTCTAGTCTCTGTGCATC 57.551 45.455 0.00 0.00 35.69 3.91
3126 3199 3.425659 ACTGTCTAGTCTCTGTGCATCA 58.574 45.455 0.00 0.00 28.79 3.07
3127 3200 3.443329 ACTGTCTAGTCTCTGTGCATCAG 59.557 47.826 9.27 9.27 37.83 2.90
3128 3201 3.425659 TGTCTAGTCTCTGTGCATCAGT 58.574 45.455 13.59 1.15 43.97 3.41
3129 3202 3.192212 TGTCTAGTCTCTGTGCATCAGTG 59.808 47.826 13.59 11.88 43.97 3.66
3130 3203 3.192422 GTCTAGTCTCTGTGCATCAGTGT 59.808 47.826 13.59 3.03 43.97 3.55
3131 3204 2.739885 AGTCTCTGTGCATCAGTGTC 57.260 50.000 13.59 10.12 43.97 3.67
3132 3205 1.966354 AGTCTCTGTGCATCAGTGTCA 59.034 47.619 13.59 0.00 43.97 3.58
3133 3206 2.566279 AGTCTCTGTGCATCAGTGTCAT 59.434 45.455 13.59 3.28 43.97 3.06
3134 3207 2.928757 GTCTCTGTGCATCAGTGTCATC 59.071 50.000 13.59 4.40 43.97 2.92
3135 3208 2.093816 TCTCTGTGCATCAGTGTCATCC 60.094 50.000 13.59 0.00 43.97 3.51
3136 3209 1.065926 TCTGTGCATCAGTGTCATCCC 60.066 52.381 13.59 0.00 43.97 3.85
3137 3210 0.986527 TGTGCATCAGTGTCATCCCT 59.013 50.000 0.00 0.00 0.00 4.20
3138 3211 1.339342 TGTGCATCAGTGTCATCCCTG 60.339 52.381 0.00 0.00 0.00 4.45
3139 3212 0.253894 TGCATCAGTGTCATCCCTGG 59.746 55.000 0.00 0.00 0.00 4.45
3140 3213 0.543277 GCATCAGTGTCATCCCTGGA 59.457 55.000 0.00 0.00 0.00 3.86
3141 3214 1.142465 GCATCAGTGTCATCCCTGGAT 59.858 52.381 0.00 0.00 34.81 3.41
3142 3215 2.809665 GCATCAGTGTCATCCCTGGATC 60.810 54.545 0.00 0.00 31.62 3.36
3143 3216 1.114627 TCAGTGTCATCCCTGGATCG 58.885 55.000 0.00 0.00 31.62 3.69
3144 3217 0.105593 CAGTGTCATCCCTGGATCGG 59.894 60.000 0.00 0.00 31.62 4.18
3145 3218 0.325671 AGTGTCATCCCTGGATCGGT 60.326 55.000 0.00 0.00 31.62 4.69
3146 3219 1.063190 AGTGTCATCCCTGGATCGGTA 60.063 52.381 0.00 0.00 31.62 4.02
3147 3220 1.760613 GTGTCATCCCTGGATCGGTAA 59.239 52.381 0.00 0.00 31.62 2.85
3148 3221 2.368875 GTGTCATCCCTGGATCGGTAAT 59.631 50.000 0.00 0.00 31.62 1.89
3149 3222 2.368548 TGTCATCCCTGGATCGGTAATG 59.631 50.000 0.00 0.00 31.62 1.90
3150 3223 1.347707 TCATCCCTGGATCGGTAATGC 59.652 52.381 0.00 0.00 31.62 3.56
3151 3224 1.349026 CATCCCTGGATCGGTAATGCT 59.651 52.381 0.00 0.00 31.62 3.79
3152 3225 0.758734 TCCCTGGATCGGTAATGCTG 59.241 55.000 0.00 0.00 0.00 4.41
3153 3226 0.758734 CCCTGGATCGGTAATGCTGA 59.241 55.000 0.00 0.00 36.82 4.26
3154 3227 1.541233 CCCTGGATCGGTAATGCTGAC 60.541 57.143 0.00 0.00 34.90 3.51
3155 3228 1.138859 CCTGGATCGGTAATGCTGACA 59.861 52.381 0.00 0.00 34.90 3.58
3156 3229 2.205074 CTGGATCGGTAATGCTGACAC 58.795 52.381 0.00 0.00 34.90 3.67
3157 3230 1.209128 GGATCGGTAATGCTGACACG 58.791 55.000 0.00 0.00 34.90 4.49
3158 3231 0.577269 GATCGGTAATGCTGACACGC 59.423 55.000 0.00 0.00 34.90 5.34
3159 3232 0.108377 ATCGGTAATGCTGACACGCA 60.108 50.000 2.70 2.70 45.10 5.24
3160 3233 1.011968 TCGGTAATGCTGACACGCAC 61.012 55.000 2.32 0.00 43.61 5.34
3161 3234 1.288419 CGGTAATGCTGACACGCACA 61.288 55.000 2.32 0.00 43.61 4.57
3162 3235 0.443869 GGTAATGCTGACACGCACAG 59.556 55.000 2.32 0.00 43.61 3.66
3163 3236 1.148310 GTAATGCTGACACGCACAGT 58.852 50.000 0.00 0.00 43.61 3.55
3164 3237 2.333926 GTAATGCTGACACGCACAGTA 58.666 47.619 0.00 0.00 43.61 2.74
3165 3238 1.148310 AATGCTGACACGCACAGTAC 58.852 50.000 0.00 0.00 43.61 2.73
3166 3239 0.318441 ATGCTGACACGCACAGTACT 59.682 50.000 0.00 0.00 43.61 2.73
3167 3240 0.104120 TGCTGACACGCACAGTACTT 59.896 50.000 0.00 0.00 37.64 2.24
3168 3241 0.508641 GCTGACACGCACAGTACTTG 59.491 55.000 0.00 0.00 37.64 3.16
3169 3242 1.868109 GCTGACACGCACAGTACTTGA 60.868 52.381 0.00 0.00 37.64 3.02
3170 3243 2.054363 CTGACACGCACAGTACTTGAG 58.946 52.381 0.00 0.02 0.00 3.02
3171 3244 1.269569 TGACACGCACAGTACTTGAGG 60.270 52.381 0.00 0.00 0.00 3.86
3172 3245 1.000607 GACACGCACAGTACTTGAGGA 60.001 52.381 0.00 0.00 0.00 3.71
3173 3246 1.618837 ACACGCACAGTACTTGAGGAT 59.381 47.619 0.00 0.00 0.00 3.24
3174 3247 2.037251 ACACGCACAGTACTTGAGGATT 59.963 45.455 0.00 0.00 0.00 3.01
3175 3248 3.067106 CACGCACAGTACTTGAGGATTT 58.933 45.455 0.00 0.00 0.00 2.17
3176 3249 4.242475 CACGCACAGTACTTGAGGATTTA 58.758 43.478 0.00 0.00 0.00 1.40
3177 3250 4.870426 CACGCACAGTACTTGAGGATTTAT 59.130 41.667 0.00 0.00 0.00 1.40
3178 3251 6.040247 CACGCACAGTACTTGAGGATTTATA 58.960 40.000 0.00 0.00 0.00 0.98
3179 3252 6.533723 CACGCACAGTACTTGAGGATTTATAA 59.466 38.462 0.00 0.00 0.00 0.98
3180 3253 7.224753 CACGCACAGTACTTGAGGATTTATAAT 59.775 37.037 0.00 0.00 0.00 1.28
3181 3254 8.418662 ACGCACAGTACTTGAGGATTTATAATA 58.581 33.333 0.00 0.00 0.00 0.98
3182 3255 8.916654 CGCACAGTACTTGAGGATTTATAATAG 58.083 37.037 0.00 0.00 0.00 1.73
3183 3256 9.982651 GCACAGTACTTGAGGATTTATAATAGA 57.017 33.333 0.00 0.00 0.00 1.98
3206 3279 8.902540 AGAGTTTCAATCACACACTTATTACA 57.097 30.769 0.00 0.00 0.00 2.41
3207 3280 9.507329 AGAGTTTCAATCACACACTTATTACAT 57.493 29.630 0.00 0.00 0.00 2.29
3208 3281 9.760660 GAGTTTCAATCACACACTTATTACATC 57.239 33.333 0.00 0.00 0.00 3.06
3209 3282 8.443160 AGTTTCAATCACACACTTATTACATCG 58.557 33.333 0.00 0.00 0.00 3.84
3210 3283 8.440059 GTTTCAATCACACACTTATTACATCGA 58.560 33.333 0.00 0.00 0.00 3.59
3211 3284 8.541133 TTCAATCACACACTTATTACATCGAA 57.459 30.769 0.00 0.00 0.00 3.71
3212 3285 8.716646 TCAATCACACACTTATTACATCGAAT 57.283 30.769 0.00 0.00 0.00 3.34
3213 3286 8.603181 TCAATCACACACTTATTACATCGAATG 58.397 33.333 0.00 0.00 0.00 2.67
3214 3287 8.390354 CAATCACACACTTATTACATCGAATGT 58.610 33.333 0.00 0.00 46.92 2.71
3215 3288 7.520119 TCACACACTTATTACATCGAATGTC 57.480 36.000 4.15 0.00 43.67 3.06
3216 3289 7.320399 TCACACACTTATTACATCGAATGTCT 58.680 34.615 4.15 0.00 43.67 3.41
3217 3290 7.488150 TCACACACTTATTACATCGAATGTCTC 59.512 37.037 4.15 0.00 43.67 3.36
3218 3291 7.275560 CACACACTTATTACATCGAATGTCTCA 59.724 37.037 4.15 0.00 43.67 3.27
3219 3292 7.817478 ACACACTTATTACATCGAATGTCTCAA 59.183 33.333 4.15 0.00 43.67 3.02
3220 3293 8.655970 CACACTTATTACATCGAATGTCTCAAA 58.344 33.333 4.15 0.00 43.67 2.69
3221 3294 9.214957 ACACTTATTACATCGAATGTCTCAAAA 57.785 29.630 4.15 0.00 43.67 2.44
3252 3325 9.503399 ACTTATTACAATACTATGGCTTAAGGC 57.497 33.333 21.52 21.52 41.50 4.35
3265 3338 4.957759 GCTTAAGGCCATCTAAAAACGA 57.042 40.909 5.01 0.00 34.27 3.85
3266 3339 5.500645 GCTTAAGGCCATCTAAAAACGAT 57.499 39.130 5.01 0.00 34.27 3.73
3267 3340 6.613755 GCTTAAGGCCATCTAAAAACGATA 57.386 37.500 5.01 0.00 34.27 2.92
3268 3341 7.023197 GCTTAAGGCCATCTAAAAACGATAA 57.977 36.000 5.01 0.00 34.27 1.75
3269 3342 6.910972 GCTTAAGGCCATCTAAAAACGATAAC 59.089 38.462 5.01 0.00 34.27 1.89
3270 3343 7.414762 GCTTAAGGCCATCTAAAAACGATAACA 60.415 37.037 5.01 0.00 34.27 2.41
3271 3344 6.436843 AAGGCCATCTAAAAACGATAACAG 57.563 37.500 5.01 0.00 0.00 3.16
3272 3345 5.497474 AGGCCATCTAAAAACGATAACAGT 58.503 37.500 5.01 0.00 0.00 3.55
3273 3346 5.354234 AGGCCATCTAAAAACGATAACAGTG 59.646 40.000 5.01 0.00 0.00 3.66
3274 3347 5.123344 GGCCATCTAAAAACGATAACAGTGT 59.877 40.000 0.00 0.00 0.00 3.55
3275 3348 6.021596 GCCATCTAAAAACGATAACAGTGTG 58.978 40.000 0.00 0.00 0.00 3.82
3276 3349 6.128391 GCCATCTAAAAACGATAACAGTGTGA 60.128 38.462 0.00 0.00 0.00 3.58
3277 3350 7.456253 CCATCTAAAAACGATAACAGTGTGAG 58.544 38.462 0.00 0.00 0.00 3.51
3278 3351 7.413000 CCATCTAAAAACGATAACAGTGTGAGG 60.413 40.741 0.00 0.00 0.00 3.86
3279 3352 4.483476 AAAAACGATAACAGTGTGAGGC 57.517 40.909 0.00 0.00 0.00 4.70
3280 3353 3.402628 AAACGATAACAGTGTGAGGCT 57.597 42.857 0.00 0.00 0.00 4.58
3281 3354 3.402628 AACGATAACAGTGTGAGGCTT 57.597 42.857 0.00 0.00 0.00 4.35
3282 3355 2.688507 ACGATAACAGTGTGAGGCTTG 58.311 47.619 0.00 0.00 0.00 4.01
3283 3356 2.002586 CGATAACAGTGTGAGGCTTGG 58.997 52.381 0.00 0.00 0.00 3.61
3284 3357 2.353704 CGATAACAGTGTGAGGCTTGGA 60.354 50.000 0.00 0.00 0.00 3.53
3285 3358 3.674997 GATAACAGTGTGAGGCTTGGAA 58.325 45.455 0.00 0.00 0.00 3.53
3286 3359 1.972872 AACAGTGTGAGGCTTGGAAG 58.027 50.000 0.00 0.00 0.00 3.46
3287 3360 1.131638 ACAGTGTGAGGCTTGGAAGA 58.868 50.000 0.00 0.00 0.00 2.87
3288 3361 1.701847 ACAGTGTGAGGCTTGGAAGAT 59.298 47.619 0.00 0.00 0.00 2.40
3289 3362 2.906389 ACAGTGTGAGGCTTGGAAGATA 59.094 45.455 0.00 0.00 0.00 1.98
3290 3363 3.327757 ACAGTGTGAGGCTTGGAAGATAA 59.672 43.478 0.00 0.00 0.00 1.75
3291 3364 4.202461 ACAGTGTGAGGCTTGGAAGATAAA 60.202 41.667 0.00 0.00 0.00 1.40
3292 3365 4.394300 CAGTGTGAGGCTTGGAAGATAAAG 59.606 45.833 0.00 0.00 0.00 1.85
3293 3366 4.042187 AGTGTGAGGCTTGGAAGATAAAGT 59.958 41.667 0.00 0.00 0.00 2.66
3294 3367 4.154918 GTGTGAGGCTTGGAAGATAAAGTG 59.845 45.833 0.00 0.00 0.00 3.16
3295 3368 4.041567 TGTGAGGCTTGGAAGATAAAGTGA 59.958 41.667 0.00 0.00 0.00 3.41
3296 3369 4.633565 GTGAGGCTTGGAAGATAAAGTGAG 59.366 45.833 0.00 0.00 0.00 3.51
3297 3370 4.287067 TGAGGCTTGGAAGATAAAGTGAGT 59.713 41.667 0.00 0.00 0.00 3.41
3298 3371 4.837972 AGGCTTGGAAGATAAAGTGAGTC 58.162 43.478 0.00 0.00 0.00 3.36
3299 3372 3.942115 GGCTTGGAAGATAAAGTGAGTCC 59.058 47.826 0.00 0.00 0.00 3.85
3300 3373 4.565652 GGCTTGGAAGATAAAGTGAGTCCA 60.566 45.833 0.00 0.00 33.39 4.02
3301 3374 5.189180 GCTTGGAAGATAAAGTGAGTCCAT 58.811 41.667 0.00 0.00 35.19 3.41
3302 3375 5.649831 GCTTGGAAGATAAAGTGAGTCCATT 59.350 40.000 0.00 0.00 35.19 3.16
3303 3376 6.823689 GCTTGGAAGATAAAGTGAGTCCATTA 59.176 38.462 0.00 0.00 35.19 1.90
3304 3377 7.336931 GCTTGGAAGATAAAGTGAGTCCATTAA 59.663 37.037 0.00 0.00 35.19 1.40
3305 3378 8.561738 TTGGAAGATAAAGTGAGTCCATTAAC 57.438 34.615 0.00 0.00 35.19 2.01
3306 3379 7.918076 TGGAAGATAAAGTGAGTCCATTAACT 58.082 34.615 0.00 0.00 30.27 2.24
3307 3380 8.041323 TGGAAGATAAAGTGAGTCCATTAACTC 58.959 37.037 0.00 0.00 44.87 3.01
3308 3381 7.496263 GGAAGATAAAGTGAGTCCATTAACTCC 59.504 40.741 1.88 0.00 44.17 3.85
3309 3382 7.496346 AGATAAAGTGAGTCCATTAACTCCA 57.504 36.000 1.88 0.00 44.17 3.86
3310 3383 7.918076 AGATAAAGTGAGTCCATTAACTCCAA 58.082 34.615 1.88 0.00 44.17 3.53
3311 3384 7.824779 AGATAAAGTGAGTCCATTAACTCCAAC 59.175 37.037 1.88 0.00 44.17 3.77
3312 3385 3.926616 AGTGAGTCCATTAACTCCAACG 58.073 45.455 1.88 0.00 44.17 4.10
3313 3386 3.000727 GTGAGTCCATTAACTCCAACGG 58.999 50.000 1.88 0.00 44.17 4.44
3314 3387 2.007608 GAGTCCATTAACTCCAACGGC 58.992 52.381 0.00 0.00 39.85 5.68
3315 3388 1.349688 AGTCCATTAACTCCAACGGCA 59.650 47.619 0.00 0.00 0.00 5.69
3316 3389 2.026262 AGTCCATTAACTCCAACGGCAT 60.026 45.455 0.00 0.00 0.00 4.40
3317 3390 3.199071 AGTCCATTAACTCCAACGGCATA 59.801 43.478 0.00 0.00 0.00 3.14
3318 3391 3.560068 GTCCATTAACTCCAACGGCATAG 59.440 47.826 0.00 0.00 0.00 2.23
3319 3392 2.290641 CCATTAACTCCAACGGCATAGC 59.709 50.000 0.00 0.00 0.00 2.97
3320 3393 3.206150 CATTAACTCCAACGGCATAGCT 58.794 45.455 0.00 0.00 0.00 3.32
3321 3394 2.309528 TAACTCCAACGGCATAGCTG 57.690 50.000 0.00 0.00 41.29 4.24
3322 3395 0.613260 AACTCCAACGGCATAGCTGA 59.387 50.000 4.61 0.00 38.46 4.26
3323 3396 0.176680 ACTCCAACGGCATAGCTGAG 59.823 55.000 4.61 0.00 38.46 3.35
3324 3397 0.176680 CTCCAACGGCATAGCTGAGT 59.823 55.000 4.61 0.00 38.46 3.41
3325 3398 0.108186 TCCAACGGCATAGCTGAGTG 60.108 55.000 4.61 2.55 38.46 3.51
3326 3399 0.108186 CCAACGGCATAGCTGAGTGA 60.108 55.000 4.61 0.00 38.46 3.41
3327 3400 1.675714 CCAACGGCATAGCTGAGTGAA 60.676 52.381 4.61 0.00 38.46 3.18
3328 3401 2.076100 CAACGGCATAGCTGAGTGAAA 58.924 47.619 4.61 0.00 38.46 2.69
3329 3402 2.015736 ACGGCATAGCTGAGTGAAAG 57.984 50.000 4.61 0.00 38.46 2.62
3330 3403 1.550524 ACGGCATAGCTGAGTGAAAGA 59.449 47.619 4.61 0.00 38.46 2.52
3331 3404 1.929836 CGGCATAGCTGAGTGAAAGAC 59.070 52.381 0.00 0.00 37.02 3.01
3332 3405 2.675032 CGGCATAGCTGAGTGAAAGACA 60.675 50.000 0.00 0.00 37.02 3.41
3333 3406 3.338249 GGCATAGCTGAGTGAAAGACAA 58.662 45.455 0.00 0.00 0.00 3.18
3334 3407 3.126000 GGCATAGCTGAGTGAAAGACAAC 59.874 47.826 0.00 0.00 0.00 3.32
3335 3408 3.181526 GCATAGCTGAGTGAAAGACAACG 60.182 47.826 0.00 0.00 0.00 4.10
3336 3409 2.890808 AGCTGAGTGAAAGACAACGA 57.109 45.000 0.00 0.00 0.00 3.85
3337 3410 2.474816 AGCTGAGTGAAAGACAACGAC 58.525 47.619 0.00 0.00 0.00 4.34
3338 3411 1.527311 GCTGAGTGAAAGACAACGACC 59.473 52.381 0.00 0.00 0.00 4.79
3339 3412 2.803492 GCTGAGTGAAAGACAACGACCT 60.803 50.000 0.00 0.00 0.00 3.85
3340 3413 3.552273 GCTGAGTGAAAGACAACGACCTA 60.552 47.826 0.00 0.00 0.00 3.08
3341 3414 4.810790 CTGAGTGAAAGACAACGACCTAT 58.189 43.478 0.00 0.00 0.00 2.57
3342 3415 4.556233 TGAGTGAAAGACAACGACCTATG 58.444 43.478 0.00 0.00 0.00 2.23
3343 3416 3.926616 AGTGAAAGACAACGACCTATGG 58.073 45.455 0.00 0.00 0.00 2.74
3344 3417 2.415512 GTGAAAGACAACGACCTATGGC 59.584 50.000 0.00 0.00 0.00 4.40
3345 3418 2.037902 TGAAAGACAACGACCTATGGCA 59.962 45.455 0.00 0.00 0.00 4.92
3346 3419 2.094762 AAGACAACGACCTATGGCAC 57.905 50.000 0.00 0.00 0.00 5.01
3347 3420 0.249398 AGACAACGACCTATGGCACC 59.751 55.000 0.00 0.00 0.00 5.01
3348 3421 0.249398 GACAACGACCTATGGCACCT 59.751 55.000 0.00 0.00 0.00 4.00
3349 3422 0.690762 ACAACGACCTATGGCACCTT 59.309 50.000 0.00 0.00 0.00 3.50
3350 3423 1.903860 ACAACGACCTATGGCACCTTA 59.096 47.619 0.00 0.00 0.00 2.69
3351 3424 2.277084 CAACGACCTATGGCACCTTAC 58.723 52.381 0.00 0.00 0.00 2.34
3352 3425 1.861982 ACGACCTATGGCACCTTACT 58.138 50.000 0.00 0.00 0.00 2.24
3353 3426 1.755380 ACGACCTATGGCACCTTACTC 59.245 52.381 0.00 0.00 0.00 2.59
3354 3427 1.269102 CGACCTATGGCACCTTACTCG 60.269 57.143 0.00 0.00 0.00 4.18
3355 3428 1.755380 GACCTATGGCACCTTACTCGT 59.245 52.381 0.00 0.00 0.00 4.18
3356 3429 1.755380 ACCTATGGCACCTTACTCGTC 59.245 52.381 0.00 0.00 0.00 4.20
3357 3430 1.269102 CCTATGGCACCTTACTCGTCG 60.269 57.143 0.00 0.00 0.00 5.12
3358 3431 1.404391 CTATGGCACCTTACTCGTCGT 59.596 52.381 0.00 0.00 0.00 4.34
3359 3432 0.172803 ATGGCACCTTACTCGTCGTC 59.827 55.000 0.00 0.00 0.00 4.20
3360 3433 0.892358 TGGCACCTTACTCGTCGTCT 60.892 55.000 0.00 0.00 0.00 4.18
3361 3434 0.456312 GGCACCTTACTCGTCGTCTG 60.456 60.000 0.00 0.00 0.00 3.51
3362 3435 0.520404 GCACCTTACTCGTCGTCTGA 59.480 55.000 0.00 0.00 0.00 3.27
3363 3436 1.068748 GCACCTTACTCGTCGTCTGAA 60.069 52.381 0.00 0.00 0.00 3.02
3364 3437 2.606308 GCACCTTACTCGTCGTCTGAAA 60.606 50.000 0.00 0.00 0.00 2.69
3365 3438 3.635331 CACCTTACTCGTCGTCTGAAAA 58.365 45.455 0.00 0.00 0.00 2.29
3366 3439 3.669122 CACCTTACTCGTCGTCTGAAAAG 59.331 47.826 0.00 0.00 0.00 2.27
3367 3440 3.317430 ACCTTACTCGTCGTCTGAAAAGT 59.683 43.478 0.00 0.00 0.00 2.66
3368 3441 3.913163 CCTTACTCGTCGTCTGAAAAGTC 59.087 47.826 0.00 0.00 0.00 3.01
3369 3442 4.320348 CCTTACTCGTCGTCTGAAAAGTCT 60.320 45.833 0.00 0.00 0.00 3.24
3370 3443 3.001395 ACTCGTCGTCTGAAAAGTCTG 57.999 47.619 0.00 0.00 0.00 3.51
3371 3444 1.716581 CTCGTCGTCTGAAAAGTCTGC 59.283 52.381 0.00 0.00 0.00 4.26
3372 3445 1.066454 TCGTCGTCTGAAAAGTCTGCA 59.934 47.619 0.00 0.00 0.00 4.41
3373 3446 1.858458 CGTCGTCTGAAAAGTCTGCAA 59.142 47.619 0.00 0.00 0.00 4.08
3374 3447 2.347661 CGTCGTCTGAAAAGTCTGCAAC 60.348 50.000 0.00 0.00 0.00 4.17
3375 3448 2.607635 GTCGTCTGAAAAGTCTGCAACA 59.392 45.455 0.00 0.00 0.00 3.33
3376 3449 3.248602 GTCGTCTGAAAAGTCTGCAACAT 59.751 43.478 0.00 0.00 0.00 2.71
3377 3450 3.248363 TCGTCTGAAAAGTCTGCAACATG 59.752 43.478 0.00 0.00 0.00 3.21
3378 3451 3.248363 CGTCTGAAAAGTCTGCAACATGA 59.752 43.478 0.00 0.00 0.00 3.07
3379 3452 4.260743 CGTCTGAAAAGTCTGCAACATGAA 60.261 41.667 0.00 0.00 0.00 2.57
3380 3453 5.581605 GTCTGAAAAGTCTGCAACATGAAA 58.418 37.500 0.00 0.00 0.00 2.69
3381 3454 6.211515 GTCTGAAAAGTCTGCAACATGAAAT 58.788 36.000 0.00 0.00 0.00 2.17
3382 3455 7.362662 GTCTGAAAAGTCTGCAACATGAAATA 58.637 34.615 0.00 0.00 0.00 1.40
3383 3456 8.025445 GTCTGAAAAGTCTGCAACATGAAATAT 58.975 33.333 0.00 0.00 0.00 1.28
3384 3457 8.579006 TCTGAAAAGTCTGCAACATGAAATATT 58.421 29.630 0.00 0.00 0.00 1.28
3385 3458 8.523523 TGAAAAGTCTGCAACATGAAATATTG 57.476 30.769 0.00 0.00 0.00 1.90
3391 3464 2.867975 GCAACATGAAATATTGCAGCCC 59.132 45.455 11.82 0.00 46.37 5.19
3392 3465 3.117794 CAACATGAAATATTGCAGCCCG 58.882 45.455 0.00 0.00 0.00 6.13
3393 3466 2.653726 ACATGAAATATTGCAGCCCGA 58.346 42.857 0.00 0.00 0.00 5.14
3394 3467 3.023119 ACATGAAATATTGCAGCCCGAA 58.977 40.909 0.00 0.00 0.00 4.30
3395 3468 3.446873 ACATGAAATATTGCAGCCCGAAA 59.553 39.130 0.00 0.00 0.00 3.46
3396 3469 4.099881 ACATGAAATATTGCAGCCCGAAAT 59.900 37.500 0.00 0.00 0.00 2.17
3397 3470 4.044336 TGAAATATTGCAGCCCGAAATG 57.956 40.909 0.00 0.00 0.00 2.32
3398 3471 3.181477 TGAAATATTGCAGCCCGAAATGG 60.181 43.478 0.00 0.00 37.55 3.16
3407 3480 2.745884 CCGAAATGGGTCAGCGCA 60.746 61.111 11.47 0.00 41.83 6.09
3412 3485 4.740922 ATGGGTCAGCGCATTGAA 57.259 50.000 11.47 0.00 44.43 2.69
3413 3486 3.196040 ATGGGTCAGCGCATTGAAT 57.804 47.368 11.47 0.00 44.43 2.57
3414 3487 2.346766 ATGGGTCAGCGCATTGAATA 57.653 45.000 11.47 0.00 44.43 1.75
3415 3488 2.346766 TGGGTCAGCGCATTGAATAT 57.653 45.000 11.47 0.00 32.36 1.28
3416 3489 1.948834 TGGGTCAGCGCATTGAATATG 59.051 47.619 11.47 0.00 32.36 1.78
3417 3490 1.335324 GGGTCAGCGCATTGAATATGC 60.335 52.381 11.47 0.00 41.35 3.14
3418 3491 1.605710 GGTCAGCGCATTGAATATGCT 59.394 47.619 11.47 0.00 42.50 3.79
3420 3493 2.046283 CAGCGCATTGAATATGCTGG 57.954 50.000 11.47 5.08 46.97 4.85
3421 3494 0.313043 AGCGCATTGAATATGCTGGC 59.687 50.000 11.47 5.16 42.50 4.85
3422 3495 0.031043 GCGCATTGAATATGCTGGCA 59.969 50.000 0.30 0.00 42.50 4.92
3423 3496 1.536496 GCGCATTGAATATGCTGGCAA 60.536 47.619 0.30 0.00 42.50 4.52
3424 3497 2.864882 GCGCATTGAATATGCTGGCAAT 60.865 45.455 0.30 0.00 42.50 3.56
3425 3498 2.729360 CGCATTGAATATGCTGGCAATG 59.271 45.455 0.00 0.00 46.26 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 82 3.621953 GGAGGCATCCACATAGAGC 57.378 57.895 13.69 0.00 45.87 4.09
108 111 5.533528 CACTCTTGATTCATTGCATATCCCA 59.466 40.000 0.00 0.00 0.00 4.37
292 295 6.622427 AAATAGCCACCATACCTACCTATC 57.378 41.667 0.00 0.00 0.00 2.08
312 315 7.006509 CACCCACCATATATCTTCCTCAAAAT 58.993 38.462 0.00 0.00 0.00 1.82
324 327 4.468510 CGGTACCATACACCCACCATATAT 59.531 45.833 13.54 0.00 31.96 0.86
358 361 2.230994 CTAGCCTCTCTTGTGCCGCA 62.231 60.000 0.00 0.00 0.00 5.69
516 525 1.155424 GGGATCGCGCGATGGTTAAA 61.155 55.000 46.02 18.59 34.60 1.52
585 594 2.705730 TGGTGAACCGTTATGTGATGG 58.294 47.619 0.00 0.00 39.43 3.51
921 932 1.457831 GTATGGGAGGGCGAGGAGT 60.458 63.158 0.00 0.00 0.00 3.85
940 970 6.243148 GGGAAAGTGGGAACTCTAAATGTAA 58.757 40.000 0.00 0.00 32.92 2.41
955 985 3.356290 CCATAACAGAAGGGGAAAGTGG 58.644 50.000 0.00 0.00 0.00 4.00
962 992 0.395724 GGGTGCCATAACAGAAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
1062 1092 1.470051 TGACACCATCGCAGCTACTA 58.530 50.000 0.00 0.00 0.00 1.82
1063 1093 0.608130 TTGACACCATCGCAGCTACT 59.392 50.000 0.00 0.00 0.00 2.57
1182 1212 4.904895 ACACTGCATCATAGGCATATCT 57.095 40.909 0.00 0.00 41.06 1.98
1300 1330 0.750911 CCTGCTTGCCTTCCTCCATC 60.751 60.000 0.00 0.00 0.00 3.51
1339 1369 0.687354 TCTCTGGCACCTTCACCTTC 59.313 55.000 0.00 0.00 0.00 3.46
1399 1429 2.036733 CCTGTCGGTCCAACACTTTCTA 59.963 50.000 0.00 0.00 0.00 2.10
1407 1437 0.036306 ATGTTCCCTGTCGGTCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
1567 1599 8.887036 AAAAGGACAAATAAAAGGATGAACAC 57.113 30.769 0.00 0.00 0.00 3.32
1574 1606 9.990360 GGACAAATAAAAGGACAAATAAAAGGA 57.010 29.630 0.00 0.00 0.00 3.36
1575 1607 9.996554 AGGACAAATAAAAGGACAAATAAAAGG 57.003 29.630 0.00 0.00 0.00 3.11
1880 1913 6.467677 AGCAAATGAGTGTACATGAGTAAGT 58.532 36.000 0.00 0.00 30.67 2.24
1949 1982 1.537202 GCACTCACTCAAACCATGTCC 59.463 52.381 0.00 0.00 0.00 4.02
1959 1992 3.198409 AGAAACATGTGCACTCACTCA 57.802 42.857 19.41 0.00 43.49 3.41
2082 2117 9.169592 GAGGTTGCTTGTACCTAATAAACATAA 57.830 33.333 0.00 0.00 45.88 1.90
2103 2138 8.950210 CACACTATTCATTCATTAGTTGAGGTT 58.050 33.333 0.00 0.00 35.27 3.50
2163 2200 5.772672 AGAAACAACCTTGCATAACCATGTA 59.227 36.000 0.00 0.00 34.40 2.29
2180 2217 1.702957 ACCCAATCCTCGGAGAAACAA 59.297 47.619 6.58 0.00 34.09 2.83
2182 2219 1.003233 ACACCCAATCCTCGGAGAAAC 59.997 52.381 6.58 0.00 34.09 2.78
2315 2352 1.453155 CTGTAACGCTGCCTTTCCAT 58.547 50.000 0.00 0.00 0.00 3.41
2329 2366 3.428999 GCTCTAGGTCGTTGATGCTGTAA 60.429 47.826 0.00 0.00 0.00 2.41
2357 2394 4.638421 TCCGATTATCCATGGTTTGACAAC 59.362 41.667 12.58 0.00 0.00 3.32
2386 2423 2.809696 GAGAGATCGGTAGGCACTAGAC 59.190 54.545 0.00 0.00 44.14 2.59
2423 2472 7.990917 TGCTGAGTTTACATGTCAAAACTTTA 58.009 30.769 21.82 15.19 43.97 1.85
2455 2504 5.419155 CGATATTATTCAGGCTGAGGACCTA 59.581 44.000 17.91 1.60 35.10 3.08
2546 2595 7.228906 CGACTCTCCCAATATAGTAACTGAGAA 59.771 40.741 0.00 0.00 0.00 2.87
2641 2694 8.624028 GTGTTATAGTAAAAACACGCACATTTC 58.376 33.333 13.17 0.00 44.12 2.17
2704 2771 7.891498 AGGCGGTCCTAAAATTTACATATTT 57.109 32.000 0.00 0.00 42.06 1.40
2725 2794 6.417191 TGTGTCATTTAAAGACGATTAGGC 57.583 37.500 10.95 0.00 38.83 3.93
2809 2879 4.906618 AGGTGAATTGAACAACCGACTAT 58.093 39.130 0.00 0.00 0.00 2.12
2815 2885 7.039270 AGTGTAAAAAGGTGAATTGAACAACC 58.961 34.615 0.00 0.00 0.00 3.77
2940 3012 7.496346 ACAGATACAAGAGGGAAAATCTACA 57.504 36.000 0.00 0.00 0.00 2.74
2942 3014 7.365652 GGGAACAGATACAAGAGGGAAAATCTA 60.366 40.741 0.00 0.00 0.00 1.98
2949 3021 2.478292 GGGGAACAGATACAAGAGGGA 58.522 52.381 0.00 0.00 0.00 4.20
2966 3038 2.122189 GAGGGGAGGATGAGGGGG 60.122 72.222 0.00 0.00 0.00 5.40
2976 3048 3.054287 GGAAAGGTTCTAAAGGAGGGGAG 60.054 52.174 0.00 0.00 0.00 4.30
2986 3058 4.080526 GGTATGAGGCTGGAAAGGTTCTAA 60.081 45.833 0.00 0.00 0.00 2.10
3010 3082 6.448387 AGGGAAAGGAGAAAAATCCATAGAGA 59.552 38.462 0.00 0.00 42.26 3.10
3011 3083 6.667661 AGGGAAAGGAGAAAAATCCATAGAG 58.332 40.000 0.00 0.00 42.26 2.43
3019 3091 6.272090 TGGCATTAAAGGGAAAGGAGAAAAAT 59.728 34.615 0.00 0.00 0.00 1.82
3024 3096 3.877735 GCTGGCATTAAAGGGAAAGGAGA 60.878 47.826 0.00 0.00 0.00 3.71
3031 3103 3.117888 CCTTAGAGCTGGCATTAAAGGGA 60.118 47.826 0.00 0.00 0.00 4.20
3042 3114 2.764128 TCGGGCCCTTAGAGCTGG 60.764 66.667 22.43 0.00 0.00 4.85
3052 3124 2.123251 TCATCTCCTCTCGGGCCC 60.123 66.667 13.57 13.57 34.39 5.80
3087 3160 3.380320 ACAGTTTGAGGTTTGGTTGCTAC 59.620 43.478 0.00 0.00 0.00 3.58
3088 3161 3.626930 ACAGTTTGAGGTTTGGTTGCTA 58.373 40.909 0.00 0.00 0.00 3.49
3089 3162 2.427095 GACAGTTTGAGGTTTGGTTGCT 59.573 45.455 0.00 0.00 0.00 3.91
3090 3163 2.427095 AGACAGTTTGAGGTTTGGTTGC 59.573 45.455 0.00 0.00 0.00 4.17
3091 3164 4.881850 ACTAGACAGTTTGAGGTTTGGTTG 59.118 41.667 0.00 0.00 0.00 3.77
3092 3165 5.104485 AGACTAGACAGTTTGAGGTTTGGTT 60.104 40.000 0.00 0.00 34.21 3.67
3093 3166 4.409247 AGACTAGACAGTTTGAGGTTTGGT 59.591 41.667 0.00 0.00 34.21 3.67
3094 3167 4.962155 AGACTAGACAGTTTGAGGTTTGG 58.038 43.478 0.00 0.00 34.21 3.28
3095 3168 5.694006 CAGAGACTAGACAGTTTGAGGTTTG 59.306 44.000 0.00 0.00 34.21 2.93
3096 3169 5.364157 ACAGAGACTAGACAGTTTGAGGTTT 59.636 40.000 0.00 0.00 34.21 3.27
3097 3170 4.896482 ACAGAGACTAGACAGTTTGAGGTT 59.104 41.667 0.00 0.00 34.21 3.50
3098 3171 4.279671 CACAGAGACTAGACAGTTTGAGGT 59.720 45.833 0.00 0.00 34.21 3.85
3099 3172 4.804108 CACAGAGACTAGACAGTTTGAGG 58.196 47.826 0.00 0.00 34.21 3.86
3100 3173 4.233789 GCACAGAGACTAGACAGTTTGAG 58.766 47.826 0.00 0.00 34.21 3.02
3101 3174 3.636764 TGCACAGAGACTAGACAGTTTGA 59.363 43.478 0.00 0.00 34.21 2.69
3102 3175 3.982475 TGCACAGAGACTAGACAGTTTG 58.018 45.455 0.00 0.00 34.21 2.93
3103 3176 4.281941 TGATGCACAGAGACTAGACAGTTT 59.718 41.667 0.00 0.00 34.21 2.66
3104 3177 3.829026 TGATGCACAGAGACTAGACAGTT 59.171 43.478 0.00 0.00 34.21 3.16
3105 3178 3.425659 TGATGCACAGAGACTAGACAGT 58.574 45.455 0.00 0.00 37.87 3.55
3118 3191 0.986527 AGGGATGACACTGATGCACA 59.013 50.000 0.00 0.00 0.00 4.57
3119 3192 3.869623 AGGGATGACACTGATGCAC 57.130 52.632 0.00 0.00 0.00 4.57
3125 3198 0.105593 CCGATCCAGGGATGACACTG 59.894 60.000 5.35 0.00 46.15 3.66
3126 3199 0.325671 ACCGATCCAGGGATGACACT 60.326 55.000 5.35 0.00 34.60 3.55
3127 3200 1.410004 TACCGATCCAGGGATGACAC 58.590 55.000 5.35 0.00 34.60 3.67
3128 3201 2.168458 TTACCGATCCAGGGATGACA 57.832 50.000 5.35 0.00 34.60 3.58
3129 3202 2.872038 GCATTACCGATCCAGGGATGAC 60.872 54.545 5.35 0.00 34.60 3.06
3130 3203 1.347707 GCATTACCGATCCAGGGATGA 59.652 52.381 5.35 0.00 34.60 2.92
3131 3204 1.349026 AGCATTACCGATCCAGGGATG 59.651 52.381 5.35 0.00 34.60 3.51
3132 3205 1.349026 CAGCATTACCGATCCAGGGAT 59.651 52.381 0.00 0.00 37.59 3.85
3133 3206 0.758734 CAGCATTACCGATCCAGGGA 59.241 55.000 0.00 0.00 35.02 4.20
3134 3207 0.758734 TCAGCATTACCGATCCAGGG 59.241 55.000 0.00 0.00 35.02 4.45
3135 3208 1.138859 TGTCAGCATTACCGATCCAGG 59.861 52.381 0.00 0.00 37.30 4.45
3136 3209 2.205074 GTGTCAGCATTACCGATCCAG 58.795 52.381 0.00 0.00 0.00 3.86
3137 3210 1.470805 CGTGTCAGCATTACCGATCCA 60.471 52.381 0.00 0.00 0.00 3.41
3138 3211 1.209128 CGTGTCAGCATTACCGATCC 58.791 55.000 0.00 0.00 0.00 3.36
3139 3212 0.577269 GCGTGTCAGCATTACCGATC 59.423 55.000 0.00 0.00 37.05 3.69
3140 3213 0.108377 TGCGTGTCAGCATTACCGAT 60.108 50.000 0.00 0.00 42.92 4.18
3141 3214 1.290639 TGCGTGTCAGCATTACCGA 59.709 52.632 0.00 0.00 42.92 4.69
3142 3215 3.869187 TGCGTGTCAGCATTACCG 58.131 55.556 0.00 0.00 42.92 4.02
3148 3221 0.104120 AAGTACTGTGCGTGTCAGCA 59.896 50.000 0.00 0.00 45.96 4.41
3149 3222 0.508641 CAAGTACTGTGCGTGTCAGC 59.491 55.000 0.00 0.00 36.50 4.26
3150 3223 2.054363 CTCAAGTACTGTGCGTGTCAG 58.946 52.381 10.96 0.07 38.68 3.51
3151 3224 1.269569 CCTCAAGTACTGTGCGTGTCA 60.270 52.381 10.96 0.00 0.00 3.58
3152 3225 1.000607 TCCTCAAGTACTGTGCGTGTC 60.001 52.381 10.96 0.00 0.00 3.67
3153 3226 1.037493 TCCTCAAGTACTGTGCGTGT 58.963 50.000 10.96 0.00 0.00 4.49
3154 3227 2.370281 ATCCTCAAGTACTGTGCGTG 57.630 50.000 5.54 5.54 0.00 5.34
3155 3228 3.402628 AAATCCTCAAGTACTGTGCGT 57.597 42.857 0.00 0.00 0.00 5.24
3156 3229 7.715265 ATTATAAATCCTCAAGTACTGTGCG 57.285 36.000 0.00 0.00 0.00 5.34
3157 3230 9.982651 TCTATTATAAATCCTCAAGTACTGTGC 57.017 33.333 0.00 0.00 0.00 4.57
3180 3253 9.990360 TGTAATAAGTGTGTGATTGAAACTCTA 57.010 29.630 0.00 0.00 0.00 2.43
3181 3254 8.902540 TGTAATAAGTGTGTGATTGAAACTCT 57.097 30.769 0.00 0.00 0.00 3.24
3182 3255 9.760660 GATGTAATAAGTGTGTGATTGAAACTC 57.239 33.333 0.00 0.00 0.00 3.01
3183 3256 8.443160 CGATGTAATAAGTGTGTGATTGAAACT 58.557 33.333 0.00 0.00 0.00 2.66
3184 3257 8.440059 TCGATGTAATAAGTGTGTGATTGAAAC 58.560 33.333 0.00 0.00 0.00 2.78
3185 3258 8.541133 TCGATGTAATAAGTGTGTGATTGAAA 57.459 30.769 0.00 0.00 0.00 2.69
3186 3259 8.541133 TTCGATGTAATAAGTGTGTGATTGAA 57.459 30.769 0.00 0.00 0.00 2.69
3187 3260 8.603181 CATTCGATGTAATAAGTGTGTGATTGA 58.397 33.333 0.00 0.00 0.00 2.57
3188 3261 8.390354 ACATTCGATGTAATAAGTGTGTGATTG 58.610 33.333 0.00 0.00 42.78 2.67
3189 3262 8.492673 ACATTCGATGTAATAAGTGTGTGATT 57.507 30.769 0.00 0.00 42.78 2.57
3190 3263 7.981789 AGACATTCGATGTAATAAGTGTGTGAT 59.018 33.333 0.00 0.00 45.03 3.06
3191 3264 7.320399 AGACATTCGATGTAATAAGTGTGTGA 58.680 34.615 0.00 0.00 45.03 3.58
3192 3265 7.275560 TGAGACATTCGATGTAATAAGTGTGTG 59.724 37.037 0.00 0.00 45.03 3.82
3193 3266 7.320399 TGAGACATTCGATGTAATAAGTGTGT 58.680 34.615 0.00 0.00 45.03 3.72
3194 3267 7.755582 TGAGACATTCGATGTAATAAGTGTG 57.244 36.000 0.00 0.00 45.03 3.82
3195 3268 8.771920 TTTGAGACATTCGATGTAATAAGTGT 57.228 30.769 0.00 0.00 45.03 3.55
3226 3299 9.503399 GCCTTAAGCCATAGTATTGTAATAAGT 57.497 33.333 0.00 0.00 34.35 2.24
3244 3317 4.957759 TCGTTTTTAGATGGCCTTAAGC 57.042 40.909 3.32 0.00 42.60 3.09
3245 3318 7.981142 TGTTATCGTTTTTAGATGGCCTTAAG 58.019 34.615 3.32 0.00 0.00 1.85
3246 3319 7.608761 ACTGTTATCGTTTTTAGATGGCCTTAA 59.391 33.333 3.32 0.00 0.00 1.85
3247 3320 7.065324 CACTGTTATCGTTTTTAGATGGCCTTA 59.935 37.037 3.32 0.00 0.00 2.69
3248 3321 5.944007 ACTGTTATCGTTTTTAGATGGCCTT 59.056 36.000 3.32 0.00 0.00 4.35
3249 3322 5.354234 CACTGTTATCGTTTTTAGATGGCCT 59.646 40.000 3.32 0.00 0.00 5.19
3250 3323 5.123344 ACACTGTTATCGTTTTTAGATGGCC 59.877 40.000 0.00 0.00 0.00 5.36
3251 3324 6.021596 CACACTGTTATCGTTTTTAGATGGC 58.978 40.000 0.00 0.00 0.00 4.40
3252 3325 7.359262 TCACACTGTTATCGTTTTTAGATGG 57.641 36.000 0.00 0.00 0.00 3.51
3253 3326 7.456253 CCTCACACTGTTATCGTTTTTAGATG 58.544 38.462 0.00 0.00 0.00 2.90
3254 3327 6.092259 GCCTCACACTGTTATCGTTTTTAGAT 59.908 38.462 0.00 0.00 0.00 1.98
3255 3328 5.407387 GCCTCACACTGTTATCGTTTTTAGA 59.593 40.000 0.00 0.00 0.00 2.10
3256 3329 5.408604 AGCCTCACACTGTTATCGTTTTTAG 59.591 40.000 0.00 0.00 0.00 1.85
3257 3330 5.302360 AGCCTCACACTGTTATCGTTTTTA 58.698 37.500 0.00 0.00 0.00 1.52
3258 3331 4.134563 AGCCTCACACTGTTATCGTTTTT 58.865 39.130 0.00 0.00 0.00 1.94
3259 3332 3.740115 AGCCTCACACTGTTATCGTTTT 58.260 40.909 0.00 0.00 0.00 2.43
3260 3333 3.402628 AGCCTCACACTGTTATCGTTT 57.597 42.857 0.00 0.00 0.00 3.60
3261 3334 3.067106 CAAGCCTCACACTGTTATCGTT 58.933 45.455 0.00 0.00 0.00 3.85
3262 3335 2.612972 CCAAGCCTCACACTGTTATCGT 60.613 50.000 0.00 0.00 0.00 3.73
3263 3336 2.002586 CCAAGCCTCACACTGTTATCG 58.997 52.381 0.00 0.00 0.00 2.92
3264 3337 3.334583 TCCAAGCCTCACACTGTTATC 57.665 47.619 0.00 0.00 0.00 1.75
3265 3338 3.327757 TCTTCCAAGCCTCACACTGTTAT 59.672 43.478 0.00 0.00 0.00 1.89
3266 3339 2.703536 TCTTCCAAGCCTCACACTGTTA 59.296 45.455 0.00 0.00 0.00 2.41
3267 3340 1.490490 TCTTCCAAGCCTCACACTGTT 59.510 47.619 0.00 0.00 0.00 3.16
3268 3341 1.131638 TCTTCCAAGCCTCACACTGT 58.868 50.000 0.00 0.00 0.00 3.55
3269 3342 2.486472 ATCTTCCAAGCCTCACACTG 57.514 50.000 0.00 0.00 0.00 3.66
3270 3343 4.042187 ACTTTATCTTCCAAGCCTCACACT 59.958 41.667 0.00 0.00 0.00 3.55
3271 3344 4.154918 CACTTTATCTTCCAAGCCTCACAC 59.845 45.833 0.00 0.00 0.00 3.82
3272 3345 4.041567 TCACTTTATCTTCCAAGCCTCACA 59.958 41.667 0.00 0.00 0.00 3.58
3273 3346 4.579869 TCACTTTATCTTCCAAGCCTCAC 58.420 43.478 0.00 0.00 0.00 3.51
3274 3347 4.287067 ACTCACTTTATCTTCCAAGCCTCA 59.713 41.667 0.00 0.00 0.00 3.86
3275 3348 4.837972 ACTCACTTTATCTTCCAAGCCTC 58.162 43.478 0.00 0.00 0.00 4.70
3276 3349 4.323868 GGACTCACTTTATCTTCCAAGCCT 60.324 45.833 0.00 0.00 0.00 4.58
3277 3350 3.942115 GGACTCACTTTATCTTCCAAGCC 59.058 47.826 0.00 0.00 0.00 4.35
3278 3351 4.579869 TGGACTCACTTTATCTTCCAAGC 58.420 43.478 0.00 0.00 30.08 4.01
3279 3352 8.669243 GTTAATGGACTCACTTTATCTTCCAAG 58.331 37.037 0.00 0.00 36.73 3.61
3280 3353 8.383175 AGTTAATGGACTCACTTTATCTTCCAA 58.617 33.333 0.00 0.00 36.73 3.53
3281 3354 7.918076 AGTTAATGGACTCACTTTATCTTCCA 58.082 34.615 0.00 0.00 37.54 3.53
3282 3355 7.496263 GGAGTTAATGGACTCACTTTATCTTCC 59.504 40.741 10.02 0.00 46.21 3.46
3283 3356 8.041323 TGGAGTTAATGGACTCACTTTATCTTC 58.959 37.037 10.02 0.00 46.21 2.87
3284 3357 7.918076 TGGAGTTAATGGACTCACTTTATCTT 58.082 34.615 10.02 0.00 46.21 2.40
3285 3358 7.496346 TGGAGTTAATGGACTCACTTTATCT 57.504 36.000 10.02 0.00 46.21 1.98
3286 3359 7.201530 CGTTGGAGTTAATGGACTCACTTTATC 60.202 40.741 10.02 0.00 46.21 1.75
3287 3360 6.594159 CGTTGGAGTTAATGGACTCACTTTAT 59.406 38.462 10.02 0.00 46.21 1.40
3288 3361 5.929992 CGTTGGAGTTAATGGACTCACTTTA 59.070 40.000 10.02 0.00 46.21 1.85
3289 3362 4.755123 CGTTGGAGTTAATGGACTCACTTT 59.245 41.667 10.02 0.00 46.21 2.66
3290 3363 4.315803 CGTTGGAGTTAATGGACTCACTT 58.684 43.478 10.02 0.00 46.21 3.16
3291 3364 3.306780 CCGTTGGAGTTAATGGACTCACT 60.307 47.826 10.02 0.00 46.21 3.41
3292 3365 3.000727 CCGTTGGAGTTAATGGACTCAC 58.999 50.000 10.02 1.80 46.21 3.51
3293 3366 2.614481 GCCGTTGGAGTTAATGGACTCA 60.614 50.000 10.02 0.00 46.21 3.41
3294 3367 2.007608 GCCGTTGGAGTTAATGGACTC 58.992 52.381 0.00 1.11 44.20 3.36
3295 3368 1.349688 TGCCGTTGGAGTTAATGGACT 59.650 47.619 0.00 0.00 38.71 3.85
3296 3369 1.816074 TGCCGTTGGAGTTAATGGAC 58.184 50.000 0.00 0.00 38.71 4.02
3297 3370 2.799126 ATGCCGTTGGAGTTAATGGA 57.201 45.000 0.00 0.00 38.71 3.41
3298 3371 2.290641 GCTATGCCGTTGGAGTTAATGG 59.709 50.000 0.00 0.00 39.28 3.16
3299 3372 3.002656 CAGCTATGCCGTTGGAGTTAATG 59.997 47.826 0.00 0.00 0.00 1.90
3300 3373 3.118408 TCAGCTATGCCGTTGGAGTTAAT 60.118 43.478 0.00 0.00 0.00 1.40
3301 3374 2.235155 TCAGCTATGCCGTTGGAGTTAA 59.765 45.455 0.00 0.00 0.00 2.01
3302 3375 1.828595 TCAGCTATGCCGTTGGAGTTA 59.171 47.619 0.00 0.00 0.00 2.24
3303 3376 0.613260 TCAGCTATGCCGTTGGAGTT 59.387 50.000 0.00 0.00 0.00 3.01
3304 3377 0.176680 CTCAGCTATGCCGTTGGAGT 59.823 55.000 0.00 0.00 0.00 3.85
3305 3378 0.176680 ACTCAGCTATGCCGTTGGAG 59.823 55.000 0.00 0.00 0.00 3.86
3306 3379 0.108186 CACTCAGCTATGCCGTTGGA 60.108 55.000 0.00 0.00 0.00 3.53
3307 3380 0.108186 TCACTCAGCTATGCCGTTGG 60.108 55.000 0.00 0.00 0.00 3.77
3308 3381 1.725641 TTCACTCAGCTATGCCGTTG 58.274 50.000 0.00 0.00 0.00 4.10
3309 3382 2.028112 TCTTTCACTCAGCTATGCCGTT 60.028 45.455 0.00 0.00 0.00 4.44
3310 3383 1.550524 TCTTTCACTCAGCTATGCCGT 59.449 47.619 0.00 0.00 0.00 5.68
3311 3384 1.929836 GTCTTTCACTCAGCTATGCCG 59.070 52.381 0.00 0.00 0.00 5.69
3312 3385 2.977914 TGTCTTTCACTCAGCTATGCC 58.022 47.619 0.00 0.00 0.00 4.40
3313 3386 3.181526 CGTTGTCTTTCACTCAGCTATGC 60.182 47.826 0.00 0.00 0.00 3.14
3314 3387 4.090642 GTCGTTGTCTTTCACTCAGCTATG 59.909 45.833 0.00 0.00 0.00 2.23
3315 3388 4.238514 GTCGTTGTCTTTCACTCAGCTAT 58.761 43.478 0.00 0.00 0.00 2.97
3316 3389 3.552273 GGTCGTTGTCTTTCACTCAGCTA 60.552 47.826 0.00 0.00 0.00 3.32
3317 3390 2.474816 GTCGTTGTCTTTCACTCAGCT 58.525 47.619 0.00 0.00 0.00 4.24
3318 3391 1.527311 GGTCGTTGTCTTTCACTCAGC 59.473 52.381 0.00 0.00 0.00 4.26
3319 3392 3.099267 AGGTCGTTGTCTTTCACTCAG 57.901 47.619 0.00 0.00 0.00 3.35
3320 3393 4.556233 CATAGGTCGTTGTCTTTCACTCA 58.444 43.478 0.00 0.00 0.00 3.41
3321 3394 3.927142 CCATAGGTCGTTGTCTTTCACTC 59.073 47.826 0.00 0.00 0.00 3.51
3322 3395 3.864921 GCCATAGGTCGTTGTCTTTCACT 60.865 47.826 0.00 0.00 0.00 3.41
3323 3396 2.415512 GCCATAGGTCGTTGTCTTTCAC 59.584 50.000 0.00 0.00 0.00 3.18
3324 3397 2.037902 TGCCATAGGTCGTTGTCTTTCA 59.962 45.455 0.00 0.00 0.00 2.69
3325 3398 2.415512 GTGCCATAGGTCGTTGTCTTTC 59.584 50.000 0.00 0.00 0.00 2.62
3326 3399 2.423577 GTGCCATAGGTCGTTGTCTTT 58.576 47.619 0.00 0.00 0.00 2.52
3327 3400 1.338769 GGTGCCATAGGTCGTTGTCTT 60.339 52.381 0.00 0.00 0.00 3.01
3328 3401 0.249398 GGTGCCATAGGTCGTTGTCT 59.751 55.000 0.00 0.00 0.00 3.41
3329 3402 0.249398 AGGTGCCATAGGTCGTTGTC 59.751 55.000 0.00 0.00 0.00 3.18
3330 3403 0.690762 AAGGTGCCATAGGTCGTTGT 59.309 50.000 0.00 0.00 0.00 3.32
3331 3404 2.093658 AGTAAGGTGCCATAGGTCGTTG 60.094 50.000 0.00 0.00 0.00 4.10
3332 3405 2.167900 GAGTAAGGTGCCATAGGTCGTT 59.832 50.000 0.00 0.00 0.00 3.85
3333 3406 1.755380 GAGTAAGGTGCCATAGGTCGT 59.245 52.381 0.00 0.00 0.00 4.34
3334 3407 1.269102 CGAGTAAGGTGCCATAGGTCG 60.269 57.143 0.00 0.00 0.00 4.79
3335 3408 1.755380 ACGAGTAAGGTGCCATAGGTC 59.245 52.381 0.00 0.00 0.00 3.85
3336 3409 1.755380 GACGAGTAAGGTGCCATAGGT 59.245 52.381 0.00 0.00 0.00 3.08
3337 3410 1.269102 CGACGAGTAAGGTGCCATAGG 60.269 57.143 0.00 0.00 0.00 2.57
3338 3411 1.404391 ACGACGAGTAAGGTGCCATAG 59.596 52.381 0.00 0.00 0.00 2.23
3339 3412 1.402968 GACGACGAGTAAGGTGCCATA 59.597 52.381 0.00 0.00 0.00 2.74
3340 3413 0.172803 GACGACGAGTAAGGTGCCAT 59.827 55.000 0.00 0.00 0.00 4.40
3341 3414 0.892358 AGACGACGAGTAAGGTGCCA 60.892 55.000 0.00 0.00 0.00 4.92
3342 3415 0.456312 CAGACGACGAGTAAGGTGCC 60.456 60.000 0.00 0.00 0.00 5.01
3343 3416 0.520404 TCAGACGACGAGTAAGGTGC 59.480 55.000 0.00 0.00 0.00 5.01
3344 3417 2.983402 TTCAGACGACGAGTAAGGTG 57.017 50.000 0.00 0.00 0.00 4.00
3345 3418 3.317430 ACTTTTCAGACGACGAGTAAGGT 59.683 43.478 0.00 0.00 0.00 3.50
3346 3419 3.898529 ACTTTTCAGACGACGAGTAAGG 58.101 45.455 0.00 0.00 0.00 2.69
3347 3420 4.613448 CAGACTTTTCAGACGACGAGTAAG 59.387 45.833 0.00 0.00 0.00 2.34
3348 3421 4.534168 CAGACTTTTCAGACGACGAGTAA 58.466 43.478 0.00 0.00 0.00 2.24
3349 3422 3.608707 GCAGACTTTTCAGACGACGAGTA 60.609 47.826 0.00 0.00 0.00 2.59
3350 3423 2.859032 GCAGACTTTTCAGACGACGAGT 60.859 50.000 0.00 0.00 0.00 4.18
3351 3424 1.716581 GCAGACTTTTCAGACGACGAG 59.283 52.381 0.00 0.00 0.00 4.18
3352 3425 1.066454 TGCAGACTTTTCAGACGACGA 59.934 47.619 0.00 0.00 0.00 4.20
3353 3426 1.487482 TGCAGACTTTTCAGACGACG 58.513 50.000 0.00 0.00 0.00 5.12
3354 3427 2.607635 TGTTGCAGACTTTTCAGACGAC 59.392 45.455 0.00 0.00 0.00 4.34
3355 3428 2.899976 TGTTGCAGACTTTTCAGACGA 58.100 42.857 0.00 0.00 0.00 4.20
3356 3429 3.248363 TCATGTTGCAGACTTTTCAGACG 59.752 43.478 0.00 0.00 0.00 4.18
3357 3430 4.818534 TCATGTTGCAGACTTTTCAGAC 57.181 40.909 0.00 0.00 0.00 3.51
3358 3431 5.833406 TTTCATGTTGCAGACTTTTCAGA 57.167 34.783 0.00 0.00 0.00 3.27
3359 3432 8.644619 CAATATTTCATGTTGCAGACTTTTCAG 58.355 33.333 0.00 0.00 0.00 3.02
3360 3433 8.523523 CAATATTTCATGTTGCAGACTTTTCA 57.476 30.769 0.00 0.00 0.00 2.69
3371 3444 3.117794 CGGGCTGCAATATTTCATGTTG 58.882 45.455 0.50 0.00 34.88 3.33
3372 3445 3.023119 TCGGGCTGCAATATTTCATGTT 58.977 40.909 0.50 0.00 0.00 2.71
3373 3446 2.653726 TCGGGCTGCAATATTTCATGT 58.346 42.857 0.50 0.00 0.00 3.21
3374 3447 3.713858 TTCGGGCTGCAATATTTCATG 57.286 42.857 0.50 0.00 0.00 3.07
3375 3448 4.501915 CCATTTCGGGCTGCAATATTTCAT 60.502 41.667 0.50 0.00 0.00 2.57
3376 3449 3.181477 CCATTTCGGGCTGCAATATTTCA 60.181 43.478 0.50 0.00 0.00 2.69
3377 3450 3.383761 CCATTTCGGGCTGCAATATTTC 58.616 45.455 0.50 0.00 0.00 2.17
3378 3451 3.457610 CCATTTCGGGCTGCAATATTT 57.542 42.857 0.50 0.00 0.00 1.40
3390 3463 1.656818 AATGCGCTGACCCATTTCGG 61.657 55.000 9.73 0.00 0.00 4.30
3391 3464 0.523968 CAATGCGCTGACCCATTTCG 60.524 55.000 9.73 0.00 29.71 3.46
3392 3465 0.810648 TCAATGCGCTGACCCATTTC 59.189 50.000 9.73 0.00 29.71 2.17
3393 3466 1.255882 TTCAATGCGCTGACCCATTT 58.744 45.000 9.73 0.00 29.71 2.32
3394 3467 1.477553 ATTCAATGCGCTGACCCATT 58.522 45.000 9.73 0.00 32.20 3.16
3395 3468 2.346766 TATTCAATGCGCTGACCCAT 57.653 45.000 9.73 0.00 0.00 4.00
3396 3469 1.948834 CATATTCAATGCGCTGACCCA 59.051 47.619 9.73 0.00 0.00 4.51
3397 3470 1.335324 GCATATTCAATGCGCTGACCC 60.335 52.381 9.73 0.00 35.17 4.46
3398 3471 2.042104 GCATATTCAATGCGCTGACC 57.958 50.000 9.73 0.00 35.17 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.