Multiple sequence alignment - TraesCS7B01G093400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G093400 chr7B 100.000 4133 0 0 1 4133 106952924 106948792 0.000000e+00 7633.0
1 TraesCS7B01G093400 chr7D 94.069 2799 116 19 541 3303 142609758 142612542 0.000000e+00 4204.0
2 TraesCS7B01G093400 chr7D 93.063 764 49 4 3373 4133 142612630 142613392 0.000000e+00 1114.0
3 TraesCS7B01G093400 chr7D 84.752 282 26 12 4 275 142609419 142609693 2.450000e-67 267.0
4 TraesCS7B01G093400 chr7A 94.059 2693 99 20 541 3200 144602809 144605473 0.000000e+00 4030.0
5 TraesCS7B01G093400 chr7A 94.110 781 37 3 3361 4133 144606360 144607139 0.000000e+00 1179.0
6 TraesCS7B01G093400 chr7A 88.596 228 24 2 8 235 144602467 144602692 4.070000e-70 276.0
7 TraesCS7B01G093400 chr3A 86.598 194 20 5 288 476 13745470 13745278 4.190000e-50 209.0
8 TraesCS7B01G093400 chr3A 91.241 137 11 1 342 477 710709407 710709543 7.060000e-43 185.0
9 TraesCS7B01G093400 chr3A 100.000 29 0 0 2027 2055 127820822 127820794 2.000000e-03 54.7
10 TraesCS7B01G093400 chr3A 100.000 29 0 0 2027 2055 127857064 127857036 2.000000e-03 54.7
11 TraesCS7B01G093400 chr6A 83.962 212 27 6 273 477 51894849 51895060 3.260000e-46 196.0
12 TraesCS7B01G093400 chr5B 91.971 137 8 3 342 476 430309686 430309551 5.450000e-44 189.0
13 TraesCS7B01G093400 chr5B 100.000 29 0 0 2027 2055 507801191 507801163 2.000000e-03 54.7
14 TraesCS7B01G093400 chr2B 90.278 144 12 2 342 484 143970384 143970526 1.960000e-43 187.0
15 TraesCS7B01G093400 chr1A 91.367 139 9 3 342 478 457037196 457037333 1.960000e-43 187.0
16 TraesCS7B01G093400 chr4A 90.780 141 10 3 342 480 615081463 615081602 7.060000e-43 185.0
17 TraesCS7B01G093400 chr1D 91.241 137 11 1 342 477 447563040 447563176 7.060000e-43 185.0
18 TraesCS7B01G093400 chr1B 88.966 145 14 2 342 485 688380470 688380613 1.180000e-40 178.0
19 TraesCS7B01G093400 chr3B 76.423 123 25 3 2027 2147 172054017 172054137 3.450000e-06 63.9
20 TraesCS7B01G093400 chr3B 75.200 125 29 2 2027 2150 146980599 146980476 1.600000e-04 58.4
21 TraesCS7B01G093400 chr6D 100.000 29 0 0 2027 2055 452126136 452126108 2.000000e-03 54.7
22 TraesCS7B01G093400 chr3D 100.000 29 0 0 2027 2055 121266954 121266926 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G093400 chr7B 106948792 106952924 4132 True 7633.000000 7633 100.000 1 4133 1 chr7B.!!$R1 4132
1 TraesCS7B01G093400 chr7D 142609419 142613392 3973 False 1861.666667 4204 90.628 4 4133 3 chr7D.!!$F1 4129
2 TraesCS7B01G093400 chr7A 144602467 144607139 4672 False 1828.333333 4030 92.255 8 4133 3 chr7A.!!$F1 4125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 969 0.030638 CAAAACCCGTGAGCAACAGG 59.969 55.0 0.00 0.0 0.00 4.00 F
1296 1365 0.251653 TCCTGGAGTACCTCAACGCT 60.252 55.0 0.00 0.0 37.04 5.07 F
2554 2626 0.396435 TGGATTCAACTGCAGGACGT 59.604 50.0 19.93 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2477 2546 0.904865 ACGAGAAGAGGGATGGTGCA 60.905 55.000 0.0 0.0 0.00 4.57 R
2949 3021 1.215647 CTTGGCGACCTCGTAAGCT 59.784 57.895 0.0 0.0 42.22 3.74 R
3890 4732 0.035152 AGCATCCAACGCCATGAGAA 60.035 50.000 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.037089 TGTCATGTGCATGCAAATCCTATC 59.963 41.667 24.58 7.90 38.65 2.08
136 138 9.261180 CAAGAAATTAGAGCGGATGTTAGATTA 57.739 33.333 0.00 0.00 0.00 1.75
137 139 9.832445 AAGAAATTAGAGCGGATGTTAGATTAA 57.168 29.630 0.00 0.00 0.00 1.40
212 214 5.421056 AGGATCGACACCTACTAATCAAACA 59.579 40.000 10.72 0.00 35.84 2.83
222 224 8.956426 CACCTACTAATCAAACAACCAACATAT 58.044 33.333 0.00 0.00 0.00 1.78
297 310 6.826893 TTTTTAAAAGCATCAGACACAAGC 57.173 33.333 0.14 0.00 0.00 4.01
298 311 2.693797 AAAAGCATCAGACACAAGCG 57.306 45.000 0.00 0.00 0.00 4.68
299 312 0.239347 AAAGCATCAGACACAAGCGC 59.761 50.000 0.00 0.00 0.00 5.92
300 313 0.604780 AAGCATCAGACACAAGCGCT 60.605 50.000 2.64 2.64 0.00 5.92
301 314 1.018226 AGCATCAGACACAAGCGCTC 61.018 55.000 12.06 0.00 0.00 5.03
302 315 1.293963 GCATCAGACACAAGCGCTCA 61.294 55.000 12.06 0.00 0.00 4.26
303 316 1.366679 CATCAGACACAAGCGCTCAT 58.633 50.000 12.06 0.00 0.00 2.90
304 317 2.543641 CATCAGACACAAGCGCTCATA 58.456 47.619 12.06 0.00 0.00 2.15
305 318 1.996292 TCAGACACAAGCGCTCATAC 58.004 50.000 12.06 1.58 0.00 2.39
306 319 1.272212 TCAGACACAAGCGCTCATACA 59.728 47.619 12.06 0.00 0.00 2.29
307 320 1.391485 CAGACACAAGCGCTCATACAC 59.609 52.381 12.06 1.00 0.00 2.90
308 321 1.000843 AGACACAAGCGCTCATACACA 59.999 47.619 12.06 0.00 0.00 3.72
309 322 1.126846 GACACAAGCGCTCATACACAC 59.873 52.381 12.06 0.00 0.00 3.82
310 323 1.147473 CACAAGCGCTCATACACACA 58.853 50.000 12.06 0.00 0.00 3.72
311 324 1.136252 CACAAGCGCTCATACACACAC 60.136 52.381 12.06 0.00 0.00 3.82
312 325 1.147473 CAAGCGCTCATACACACACA 58.853 50.000 12.06 0.00 0.00 3.72
313 326 1.733912 CAAGCGCTCATACACACACAT 59.266 47.619 12.06 0.00 0.00 3.21
314 327 2.929398 CAAGCGCTCATACACACACATA 59.071 45.455 12.06 0.00 0.00 2.29
315 328 3.245518 AGCGCTCATACACACACATAA 57.754 42.857 2.64 0.00 0.00 1.90
316 329 3.595173 AGCGCTCATACACACACATAAA 58.405 40.909 2.64 0.00 0.00 1.40
317 330 3.370978 AGCGCTCATACACACACATAAAC 59.629 43.478 2.64 0.00 0.00 2.01
318 331 3.370978 GCGCTCATACACACACATAAACT 59.629 43.478 0.00 0.00 0.00 2.66
319 332 4.492570 GCGCTCATACACACACATAAACTC 60.493 45.833 0.00 0.00 0.00 3.01
320 333 4.625311 CGCTCATACACACACATAAACTCA 59.375 41.667 0.00 0.00 0.00 3.41
321 334 5.444613 CGCTCATACACACACATAAACTCAC 60.445 44.000 0.00 0.00 0.00 3.51
322 335 5.163854 GCTCATACACACACATAAACTCACC 60.164 44.000 0.00 0.00 0.00 4.02
323 336 5.242434 TCATACACACACATAAACTCACCC 58.758 41.667 0.00 0.00 0.00 4.61
324 337 2.858745 ACACACACATAAACTCACCCC 58.141 47.619 0.00 0.00 0.00 4.95
325 338 2.173782 ACACACACATAAACTCACCCCA 59.826 45.455 0.00 0.00 0.00 4.96
326 339 3.181434 ACACACACATAAACTCACCCCAT 60.181 43.478 0.00 0.00 0.00 4.00
327 340 3.191162 CACACACATAAACTCACCCCATG 59.809 47.826 0.00 0.00 0.00 3.66
328 341 3.073798 ACACACATAAACTCACCCCATGA 59.926 43.478 0.00 0.00 35.45 3.07
329 342 4.078537 CACACATAAACTCACCCCATGAA 58.921 43.478 0.00 0.00 36.69 2.57
330 343 4.156556 CACACATAAACTCACCCCATGAAG 59.843 45.833 0.00 0.00 36.69 3.02
331 344 3.696051 CACATAAACTCACCCCATGAAGG 59.304 47.826 0.00 0.00 36.69 3.46
332 345 2.507407 TAAACTCACCCCATGAAGGC 57.493 50.000 0.00 0.00 36.69 4.35
333 346 0.482446 AAACTCACCCCATGAAGGCA 59.518 50.000 0.00 0.00 36.69 4.75
334 347 0.251341 AACTCACCCCATGAAGGCAC 60.251 55.000 0.00 0.00 36.69 5.01
335 348 1.746615 CTCACCCCATGAAGGCACG 60.747 63.158 0.00 0.00 36.69 5.34
336 349 3.443045 CACCCCATGAAGGCACGC 61.443 66.667 0.00 0.00 35.39 5.34
337 350 3.965258 ACCCCATGAAGGCACGCA 61.965 61.111 0.00 0.00 35.39 5.24
338 351 3.443045 CCCCATGAAGGCACGCAC 61.443 66.667 0.00 0.00 35.39 5.34
339 352 3.803082 CCCATGAAGGCACGCACG 61.803 66.667 0.00 0.00 35.39 5.34
340 353 4.465512 CCATGAAGGCACGCACGC 62.466 66.667 0.00 0.00 0.00 5.34
341 354 3.725459 CATGAAGGCACGCACGCA 61.725 61.111 0.00 0.00 0.00 5.24
342 355 3.726517 ATGAAGGCACGCACGCAC 61.727 61.111 0.00 0.00 0.00 5.34
350 363 4.702081 ACGCACGCACGTCTCCTC 62.702 66.667 0.00 0.00 44.43 3.71
352 365 4.057428 GCACGCACGTCTCCTCCT 62.057 66.667 0.00 0.00 0.00 3.69
353 366 2.697761 GCACGCACGTCTCCTCCTA 61.698 63.158 0.00 0.00 0.00 2.94
354 367 1.136984 CACGCACGTCTCCTCCTAC 59.863 63.158 0.00 0.00 0.00 3.18
355 368 1.002379 ACGCACGTCTCCTCCTACT 60.002 57.895 0.00 0.00 0.00 2.57
356 369 0.251354 ACGCACGTCTCCTCCTACTA 59.749 55.000 0.00 0.00 0.00 1.82
357 370 1.339438 ACGCACGTCTCCTCCTACTAA 60.339 52.381 0.00 0.00 0.00 2.24
358 371 1.741706 CGCACGTCTCCTCCTACTAAA 59.258 52.381 0.00 0.00 0.00 1.85
359 372 2.163010 CGCACGTCTCCTCCTACTAAAA 59.837 50.000 0.00 0.00 0.00 1.52
360 373 3.731264 CGCACGTCTCCTCCTACTAAAAG 60.731 52.174 0.00 0.00 0.00 2.27
361 374 3.771798 CACGTCTCCTCCTACTAAAAGC 58.228 50.000 0.00 0.00 0.00 3.51
362 375 2.422832 ACGTCTCCTCCTACTAAAAGCG 59.577 50.000 0.00 0.00 0.00 4.68
363 376 2.795331 CGTCTCCTCCTACTAAAAGCGC 60.795 54.545 0.00 0.00 0.00 5.92
364 377 2.165845 GTCTCCTCCTACTAAAAGCGCA 59.834 50.000 11.47 0.00 0.00 6.09
365 378 3.031736 TCTCCTCCTACTAAAAGCGCAT 58.968 45.455 11.47 0.00 0.00 4.73
366 379 3.068307 TCTCCTCCTACTAAAAGCGCATC 59.932 47.826 11.47 0.00 0.00 3.91
367 380 2.128035 CCTCCTACTAAAAGCGCATCG 58.872 52.381 11.47 0.00 0.00 3.84
378 391 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
379 392 2.598632 CGCATCGCCGGAAATCCTC 61.599 63.158 5.05 0.00 0.00 3.71
380 393 1.523711 GCATCGCCGGAAATCCTCA 60.524 57.895 5.05 0.00 0.00 3.86
381 394 1.095228 GCATCGCCGGAAATCCTCAA 61.095 55.000 5.05 0.00 0.00 3.02
382 395 1.378531 CATCGCCGGAAATCCTCAAA 58.621 50.000 5.05 0.00 0.00 2.69
383 396 1.949525 CATCGCCGGAAATCCTCAAAT 59.050 47.619 5.05 0.00 0.00 2.32
384 397 2.992124 TCGCCGGAAATCCTCAAATA 57.008 45.000 5.05 0.00 0.00 1.40
385 398 3.269538 TCGCCGGAAATCCTCAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
386 399 3.611970 TCGCCGGAAATCCTCAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
387 400 4.204012 TCGCCGGAAATCCTCAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
388 401 4.642885 TCGCCGGAAATCCTCAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
389 402 4.976116 CGCCGGAAATCCTCAAATAAATTC 59.024 41.667 5.05 0.00 0.00 2.17
390 403 5.449862 CGCCGGAAATCCTCAAATAAATTCA 60.450 40.000 5.05 0.00 0.00 2.57
391 404 5.979517 GCCGGAAATCCTCAAATAAATTCAG 59.020 40.000 5.05 0.00 0.00 3.02
392 405 6.507023 CCGGAAATCCTCAAATAAATTCAGG 58.493 40.000 0.00 0.00 0.00 3.86
393 406 6.321181 CCGGAAATCCTCAAATAAATTCAGGA 59.679 38.462 0.00 6.03 34.09 3.86
394 407 7.147915 CCGGAAATCCTCAAATAAATTCAGGAA 60.148 37.037 0.00 0.00 34.35 3.36
395 408 8.416329 CGGAAATCCTCAAATAAATTCAGGAAT 58.584 33.333 7.20 0.00 34.35 3.01
401 414 8.352201 TCCTCAAATAAATTCAGGAATAATGCG 58.648 33.333 0.00 0.00 30.11 4.73
402 415 8.352201 CCTCAAATAAATTCAGGAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
403 416 9.390795 CTCAAATAAATTCAGGAATAATGCGAG 57.609 33.333 0.00 0.55 0.00 5.03
404 417 7.862372 TCAAATAAATTCAGGAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
405 418 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
406 419 4.558538 AATTCAGGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
407 420 1.953559 TCAGGAATAATGCGAGCACC 58.046 50.000 0.00 0.00 0.00 5.01
408 421 1.209261 TCAGGAATAATGCGAGCACCA 59.791 47.619 0.00 0.00 0.00 4.17
409 422 2.016318 CAGGAATAATGCGAGCACCAA 58.984 47.619 0.00 0.00 0.00 3.67
410 423 2.032550 CAGGAATAATGCGAGCACCAAG 59.967 50.000 0.00 0.00 0.00 3.61
411 424 2.092968 AGGAATAATGCGAGCACCAAGA 60.093 45.455 0.00 0.00 0.00 3.02
412 425 2.880890 GGAATAATGCGAGCACCAAGAT 59.119 45.455 0.00 0.00 0.00 2.40
413 426 3.316308 GGAATAATGCGAGCACCAAGATT 59.684 43.478 0.00 0.00 0.00 2.40
414 427 4.202050 GGAATAATGCGAGCACCAAGATTT 60.202 41.667 0.00 0.00 0.00 2.17
415 428 2.642139 AATGCGAGCACCAAGATTTG 57.358 45.000 0.00 0.00 0.00 2.32
416 429 1.825090 ATGCGAGCACCAAGATTTGA 58.175 45.000 0.00 0.00 0.00 2.69
417 430 1.603456 TGCGAGCACCAAGATTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
418 431 1.266718 TGCGAGCACCAAGATTTGAAC 59.733 47.619 0.00 0.00 0.00 3.18
419 432 1.401539 GCGAGCACCAAGATTTGAACC 60.402 52.381 0.00 0.00 0.00 3.62
420 433 1.200020 CGAGCACCAAGATTTGAACCC 59.800 52.381 0.00 0.00 0.00 4.11
421 434 2.519013 GAGCACCAAGATTTGAACCCT 58.481 47.619 0.00 0.00 0.00 4.34
422 435 2.229784 GAGCACCAAGATTTGAACCCTG 59.770 50.000 0.00 0.00 0.00 4.45
423 436 2.158475 AGCACCAAGATTTGAACCCTGA 60.158 45.455 0.00 0.00 0.00 3.86
424 437 2.029918 GCACCAAGATTTGAACCCTGAC 60.030 50.000 0.00 0.00 0.00 3.51
425 438 3.490348 CACCAAGATTTGAACCCTGACT 58.510 45.455 0.00 0.00 0.00 3.41
426 439 3.254166 CACCAAGATTTGAACCCTGACTG 59.746 47.826 0.00 0.00 0.00 3.51
427 440 2.821969 CCAAGATTTGAACCCTGACTGG 59.178 50.000 0.00 0.00 0.00 4.00
428 441 3.490348 CAAGATTTGAACCCTGACTGGT 58.510 45.455 0.00 0.00 41.55 4.00
438 451 3.650948 ACCCTGACTGGTTAGTATACCC 58.349 50.000 0.00 0.00 37.25 3.69
439 452 2.970640 CCCTGACTGGTTAGTATACCCC 59.029 54.545 0.00 0.00 37.25 4.95
440 453 3.374984 CCCTGACTGGTTAGTATACCCCT 60.375 52.174 0.00 0.00 37.25 4.79
441 454 3.641906 CCTGACTGGTTAGTATACCCCTG 59.358 52.174 0.00 4.50 37.25 4.45
442 455 4.287552 CTGACTGGTTAGTATACCCCTGT 58.712 47.826 12.98 12.98 37.25 4.00
443 456 4.284178 TGACTGGTTAGTATACCCCTGTC 58.716 47.826 23.08 23.08 39.34 3.51
444 457 3.640498 GACTGGTTAGTATACCCCTGTCC 59.360 52.174 21.17 9.67 36.04 4.02
445 458 3.013188 ACTGGTTAGTATACCCCTGTCCA 59.987 47.826 0.00 0.28 37.39 4.02
446 459 3.377573 TGGTTAGTATACCCCTGTCCAC 58.622 50.000 0.00 0.00 37.39 4.02
447 460 2.702478 GGTTAGTATACCCCTGTCCACC 59.298 54.545 0.00 0.00 31.71 4.61
448 461 3.631865 GGTTAGTATACCCCTGTCCACCT 60.632 52.174 0.00 0.00 31.71 4.00
449 462 4.387891 GGTTAGTATACCCCTGTCCACCTA 60.388 50.000 0.00 0.00 31.71 3.08
450 463 5.211201 GTTAGTATACCCCTGTCCACCTAA 58.789 45.833 0.00 0.00 0.00 2.69
451 464 3.650948 AGTATACCCCTGTCCACCTAAC 58.349 50.000 0.00 0.00 0.00 2.34
452 465 1.889174 ATACCCCTGTCCACCTAACC 58.111 55.000 0.00 0.00 0.00 2.85
453 466 0.492730 TACCCCTGTCCACCTAACCA 59.507 55.000 0.00 0.00 0.00 3.67
454 467 0.178843 ACCCCTGTCCACCTAACCAT 60.179 55.000 0.00 0.00 0.00 3.55
455 468 0.546598 CCCCTGTCCACCTAACCATC 59.453 60.000 0.00 0.00 0.00 3.51
456 469 1.584724 CCCTGTCCACCTAACCATCT 58.415 55.000 0.00 0.00 0.00 2.90
457 470 1.916181 CCCTGTCCACCTAACCATCTT 59.084 52.381 0.00 0.00 0.00 2.40
458 471 3.112263 CCCTGTCCACCTAACCATCTTA 58.888 50.000 0.00 0.00 0.00 2.10
459 472 3.521937 CCCTGTCCACCTAACCATCTTAA 59.478 47.826 0.00 0.00 0.00 1.85
460 473 4.514401 CCTGTCCACCTAACCATCTTAAC 58.486 47.826 0.00 0.00 0.00 2.01
461 474 4.514401 CTGTCCACCTAACCATCTTAACC 58.486 47.826 0.00 0.00 0.00 2.85
462 475 3.911260 TGTCCACCTAACCATCTTAACCA 59.089 43.478 0.00 0.00 0.00 3.67
463 476 4.259356 GTCCACCTAACCATCTTAACCAC 58.741 47.826 0.00 0.00 0.00 4.16
464 477 3.911260 TCCACCTAACCATCTTAACCACA 59.089 43.478 0.00 0.00 0.00 4.17
465 478 4.019681 TCCACCTAACCATCTTAACCACAG 60.020 45.833 0.00 0.00 0.00 3.66
466 479 4.261801 CACCTAACCATCTTAACCACAGG 58.738 47.826 0.00 0.00 0.00 4.00
467 480 3.914435 ACCTAACCATCTTAACCACAGGT 59.086 43.478 0.00 0.00 37.65 4.00
469 482 4.700213 CCTAACCATCTTAACCACAGGTTG 59.300 45.833 11.51 0.00 46.35 3.77
478 491 3.670105 CCACAGGTTGGTTGGCTAT 57.330 52.632 0.00 0.00 41.10 2.97
479 492 1.176527 CCACAGGTTGGTTGGCTATG 58.823 55.000 0.00 0.00 41.10 2.23
480 493 1.271871 CCACAGGTTGGTTGGCTATGA 60.272 52.381 0.00 0.00 41.10 2.15
481 494 2.513753 CACAGGTTGGTTGGCTATGAA 58.486 47.619 0.00 0.00 0.00 2.57
482 495 2.890311 CACAGGTTGGTTGGCTATGAAA 59.110 45.455 0.00 0.00 0.00 2.69
483 496 3.511146 CACAGGTTGGTTGGCTATGAAAT 59.489 43.478 0.00 0.00 0.00 2.17
484 497 4.021192 CACAGGTTGGTTGGCTATGAAATT 60.021 41.667 0.00 0.00 0.00 1.82
485 498 4.220602 ACAGGTTGGTTGGCTATGAAATTC 59.779 41.667 0.00 0.00 0.00 2.17
486 499 3.443681 AGGTTGGTTGGCTATGAAATTCG 59.556 43.478 0.00 0.00 0.00 3.34
487 500 3.192633 GGTTGGTTGGCTATGAAATTCGT 59.807 43.478 0.00 0.00 0.00 3.85
488 501 4.321675 GGTTGGTTGGCTATGAAATTCGTT 60.322 41.667 0.00 0.00 0.00 3.85
516 529 6.461110 AATAGAAAAGGCCTCATGAACATG 57.539 37.500 5.23 8.31 40.09 3.21
519 532 4.219288 AGAAAAGGCCTCATGAACATGTTC 59.781 41.667 28.10 28.10 39.72 3.18
520 533 1.742761 AGGCCTCATGAACATGTTCG 58.257 50.000 28.55 17.92 42.28 3.95
521 534 0.734889 GGCCTCATGAACATGTTCGG 59.265 55.000 28.55 24.02 42.28 4.30
522 535 0.734889 GCCTCATGAACATGTTCGGG 59.265 55.000 28.55 25.56 42.28 5.14
523 536 0.734889 CCTCATGAACATGTTCGGGC 59.265 55.000 28.55 10.57 42.28 6.13
524 537 1.452110 CTCATGAACATGTTCGGGCA 58.548 50.000 28.55 15.58 42.28 5.36
527 540 1.744522 CATGAACATGTTCGGGCATGA 59.255 47.619 28.55 13.35 46.65 3.07
528 541 2.127271 TGAACATGTTCGGGCATGAT 57.873 45.000 28.55 12.73 46.65 2.45
529 542 2.016318 TGAACATGTTCGGGCATGATC 58.984 47.619 28.55 18.84 46.65 2.92
530 543 1.334869 GAACATGTTCGGGCATGATCC 59.665 52.381 22.09 0.00 46.65 3.36
531 544 0.548031 ACATGTTCGGGCATGATCCT 59.452 50.000 21.03 2.47 46.65 3.24
532 545 1.768275 ACATGTTCGGGCATGATCCTA 59.232 47.619 21.03 0.00 46.65 2.94
535 548 3.358111 TGTTCGGGCATGATCCTAAAA 57.642 42.857 0.00 0.00 0.00 1.52
536 549 3.691575 TGTTCGGGCATGATCCTAAAAA 58.308 40.909 0.00 0.00 0.00 1.94
555 588 0.755686 AAAAAGCAACCATCGGGCAA 59.244 45.000 0.00 0.00 37.90 4.52
563 596 0.618458 ACCATCGGGCAAGTGTACAT 59.382 50.000 0.00 0.00 37.90 2.29
742 794 3.741700 CGTCTCTGGATCCTACGAGAAGA 60.742 52.174 23.82 13.19 35.11 2.87
764 816 1.329599 GAACACGACAACCTCACCAAC 59.670 52.381 0.00 0.00 0.00 3.77
767 819 0.463116 ACGACAACCTCACCAACACC 60.463 55.000 0.00 0.00 0.00 4.16
789 841 1.071071 TCACGAAACCACCGGAGAAAT 59.929 47.619 9.46 0.00 0.00 2.17
818 871 1.270199 GCAGCGATCTCTCATCCACAT 60.270 52.381 0.00 0.00 0.00 3.21
826 879 4.939399 TCATCCACATGAGCACCG 57.061 55.556 0.00 0.00 33.80 4.94
828 881 2.512286 ATCCACATGAGCACCGCG 60.512 61.111 0.00 0.00 0.00 6.46
829 882 3.315142 ATCCACATGAGCACCGCGT 62.315 57.895 4.92 0.00 0.00 6.01
831 884 2.738139 CACATGAGCACCGCGTCA 60.738 61.111 4.92 1.72 0.00 4.35
832 885 2.433145 ACATGAGCACCGCGTCAG 60.433 61.111 4.92 0.00 0.00 3.51
833 886 2.433145 CATGAGCACCGCGTCAGT 60.433 61.111 4.92 0.00 0.00 3.41
834 887 2.433145 ATGAGCACCGCGTCAGTG 60.433 61.111 4.92 7.56 38.30 3.66
852 909 0.104120 TGTGTCACCGTGACCTCAAG 59.896 55.000 25.39 0.00 46.40 3.02
865 922 5.618561 GTGACCTCAAGCTATTTAAACACG 58.381 41.667 0.00 0.00 0.00 4.49
867 924 4.901868 ACCTCAAGCTATTTAAACACGGA 58.098 39.130 0.00 0.00 0.00 4.69
869 926 5.944007 ACCTCAAGCTATTTAAACACGGAAT 59.056 36.000 0.00 0.00 0.00 3.01
874 931 8.519526 TCAAGCTATTTAAACACGGAATGAATT 58.480 29.630 0.00 0.00 0.00 2.17
912 969 0.030638 CAAAACCCGTGAGCAACAGG 59.969 55.000 0.00 0.00 0.00 4.00
913 970 1.734388 AAAACCCGTGAGCAACAGGC 61.734 55.000 0.00 0.00 45.30 4.85
922 979 2.028043 GCAACAGGCAACAGCACC 59.972 61.111 0.00 0.00 43.97 5.01
923 980 2.784356 GCAACAGGCAACAGCACCA 61.784 57.895 0.00 0.00 43.97 4.17
924 981 1.066257 CAACAGGCAACAGCACCAC 59.934 57.895 0.00 0.00 41.41 4.16
925 982 1.379710 AACAGGCAACAGCACCACA 60.380 52.632 0.00 0.00 41.41 4.17
926 983 1.666209 AACAGGCAACAGCACCACAC 61.666 55.000 0.00 0.00 41.41 3.82
927 984 1.825191 CAGGCAACAGCACCACACT 60.825 57.895 0.00 0.00 41.41 3.55
928 985 1.526917 AGGCAACAGCACCACACTC 60.527 57.895 0.00 0.00 41.41 3.51
929 986 1.526917 GGCAACAGCACCACACTCT 60.527 57.895 0.00 0.00 0.00 3.24
930 987 1.650912 GCAACAGCACCACACTCTG 59.349 57.895 0.00 0.00 0.00 3.35
964 1022 1.952367 GCTCAGTTGCCACTAGCCAAT 60.952 52.381 7.66 0.00 42.71 3.16
966 1024 2.161855 TCAGTTGCCACTAGCCAATTG 58.838 47.619 0.00 0.00 42.71 2.32
975 1038 1.212935 ACTAGCCAATTGGTAGCCTGG 59.787 52.381 25.19 16.92 46.77 4.45
986 1049 2.029623 GGTAGCCTGGTCGATCAGTAA 58.970 52.381 23.64 6.37 33.14 2.24
1042 1111 4.039357 CGACGACGAGCCACCTGT 62.039 66.667 0.00 0.00 42.66 4.00
1074 1143 3.114616 CAGGACGTCGCCAAGCAG 61.115 66.667 9.92 0.00 0.00 4.24
1106 1175 4.475135 GGCCTCTCCCGCCAAGAC 62.475 72.222 0.00 0.00 46.27 3.01
1256 1325 1.809869 CGGAGGAGCTGACATCGAA 59.190 57.895 0.00 0.00 0.00 3.71
1296 1365 0.251653 TCCTGGAGTACCTCAACGCT 60.252 55.000 0.00 0.00 37.04 5.07
1440 1509 2.125147 CGGCAGATGCGGGAGAAA 60.125 61.111 4.58 0.00 43.26 2.52
1452 1521 1.014564 GGGAGAAAGGCGTCGACTTG 61.015 60.000 15.51 0.00 27.73 3.16
1931 2000 1.610522 CTTCAACAAGGCCAAGGACAG 59.389 52.381 5.01 0.00 0.00 3.51
2085 2154 2.167219 CAGCGGCGTCATCGTCATT 61.167 57.895 9.37 0.00 42.21 2.57
2491 2563 0.700564 ACACATGCACCATCCCTCTT 59.299 50.000 0.00 0.00 0.00 2.85
2526 2598 6.479990 CACCATTATTTCTCTCGATTGCACTA 59.520 38.462 0.00 0.00 0.00 2.74
2536 2608 5.105063 TCTCGATTGCACTAAAGACTGATG 58.895 41.667 0.00 0.00 0.00 3.07
2542 2614 5.164620 TGCACTAAAGACTGATGGATTCA 57.835 39.130 0.00 0.00 0.00 2.57
2545 2617 5.645497 GCACTAAAGACTGATGGATTCAACT 59.355 40.000 0.00 0.00 32.78 3.16
2554 2626 0.396435 TGGATTCAACTGCAGGACGT 59.604 50.000 19.93 0.00 0.00 4.34
3083 3155 1.650536 CGGAGTACGTCGACATCGC 60.651 63.158 17.16 6.59 39.60 4.58
3142 3214 3.242870 GGTCACTGCTTGAAACTTCACAG 60.243 47.826 7.97 7.97 37.34 3.66
3158 3230 6.467677 ACTTCACAGCAGTAGAATTGTGTAT 58.532 36.000 3.73 0.00 41.19 2.29
3164 3237 4.637534 AGCAGTAGAATTGTGTATTGCAGG 59.362 41.667 8.41 0.00 38.32 4.85
3248 4032 7.923344 ACATCACATGCTTGATAGAACTAGTAC 59.077 37.037 6.60 0.00 34.29 2.73
3282 4066 4.003648 GTCATACAAGCAGGTGTTTAGCT 58.996 43.478 0.00 0.00 41.03 3.32
3314 4139 3.762823 TGCCATCATAACTGAAATGCACA 59.237 39.130 0.00 0.00 34.37 4.57
3334 4159 9.630098 ATGCACAAGACTCTAATAAAACATTTG 57.370 29.630 0.00 0.00 0.00 2.32
3335 4160 8.629158 TGCACAAGACTCTAATAAAACATTTGT 58.371 29.630 0.00 0.00 0.00 2.83
3357 4182 3.857157 ACTGAAGAAACACTTGGGCTA 57.143 42.857 0.00 0.00 39.13 3.93
3358 4183 4.373156 ACTGAAGAAACACTTGGGCTAT 57.627 40.909 0.00 0.00 39.13 2.97
3371 4210 0.314302 GGGCTATGTATGCGAGACGT 59.686 55.000 0.00 0.00 0.00 4.34
3396 4235 3.194861 GCGTCAATAGTACTTGGATGCA 58.805 45.455 21.05 0.00 0.00 3.96
3420 4259 1.072965 CCAGGTTCAAGAGCCAAGAGT 59.927 52.381 5.74 0.00 33.73 3.24
3496 4335 2.178521 CGAGCTCAACGTACGGCT 59.821 61.111 21.06 17.84 37.77 5.52
3625 4464 2.401583 TCGCAGAGCATTTACATGGT 57.598 45.000 0.00 0.00 44.10 3.55
3631 4470 4.406069 CAGAGCATTTACATGGTGAAACG 58.594 43.478 0.00 0.00 41.38 3.60
3632 4471 3.440173 AGAGCATTTACATGGTGAAACGG 59.560 43.478 0.00 0.00 41.38 4.44
3633 4472 3.417101 AGCATTTACATGGTGAAACGGA 58.583 40.909 0.00 0.00 39.75 4.69
3634 4473 4.016444 AGCATTTACATGGTGAAACGGAT 58.984 39.130 0.00 0.00 39.75 4.18
3636 4475 4.380444 GCATTTACATGGTGAAACGGATGT 60.380 41.667 0.00 0.00 41.63 3.06
3637 4476 4.757799 TTTACATGGTGAAACGGATGTG 57.242 40.909 0.00 0.00 39.85 3.21
3638 4477 2.559698 ACATGGTGAAACGGATGTGA 57.440 45.000 0.00 0.00 38.63 3.58
3639 4478 2.857483 ACATGGTGAAACGGATGTGAA 58.143 42.857 0.00 0.00 38.63 3.18
3640 4479 3.420893 ACATGGTGAAACGGATGTGAAT 58.579 40.909 0.00 0.00 38.63 2.57
3641 4480 3.826157 ACATGGTGAAACGGATGTGAATT 59.174 39.130 0.00 0.00 38.63 2.17
3642 4481 4.280677 ACATGGTGAAACGGATGTGAATTT 59.719 37.500 0.00 0.00 38.63 1.82
3645 4487 5.309638 TGGTGAAACGGATGTGAATTTCTA 58.690 37.500 0.00 0.00 38.12 2.10
3716 4558 2.158959 CGACGTCGTTGATGAGGGC 61.159 63.158 29.08 0.00 34.11 5.19
3723 4565 1.243342 CGTTGATGAGGGCCTGCAAA 61.243 55.000 12.95 0.00 0.00 3.68
3843 4685 2.579207 TCGGCATGTAGAAGTACTGC 57.421 50.000 0.00 0.00 34.83 4.40
3858 4700 2.428569 TGCGACACGAGCTCGAAC 60.429 61.111 40.58 26.71 43.02 3.95
3879 4721 1.136695 GTCAGCACCCTCTCTGATCTG 59.863 57.143 0.00 0.00 40.89 2.90
3884 4726 0.323816 ACCCTCTCTGATCTGACGCA 60.324 55.000 0.00 0.00 0.00 5.24
3903 4745 1.462283 CAGTCTGTTCTCATGGCGTTG 59.538 52.381 0.00 0.00 0.00 4.10
3906 4748 1.278985 TCTGTTCTCATGGCGTTGGAT 59.721 47.619 0.00 0.00 0.00 3.41
3935 4777 2.000447 GTTCTCCTCGCCATAACACAC 59.000 52.381 0.00 0.00 0.00 3.82
3967 4809 1.974236 CCTTCCCACTCTCTTCTGTGT 59.026 52.381 0.00 0.00 32.76 3.72
3971 4813 2.771943 TCCCACTCTCTTCTGTGTTGTT 59.228 45.455 0.00 0.00 32.76 2.83
3984 4826 5.550290 TCTGTGTTGTTATCAGATTGCTCA 58.450 37.500 0.00 0.00 34.00 4.26
4053 4895 2.954753 GCCTGTGTCGCAAGGAACG 61.955 63.158 6.18 0.00 38.47 3.95
4129 4976 0.761187 ACTCCAGAAGTTGCTCTGCA 59.239 50.000 0.00 0.00 41.36 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.422840 TGCATTCCTATGTTTTCATTGCG 58.577 39.130 0.00 0.00 40.09 4.85
1 2 6.724694 TTTGCATTCCTATGTTTTCATTGC 57.275 33.333 0.00 0.00 41.25 3.56
2 3 8.011106 GTGTTTTGCATTCCTATGTTTTCATTG 58.989 33.333 0.00 0.00 41.25 2.82
5 6 6.577103 TGTGTTTTGCATTCCTATGTTTTCA 58.423 32.000 0.00 0.00 34.12 2.69
6 7 7.384660 TCATGTGTTTTGCATTCCTATGTTTTC 59.615 33.333 0.00 0.00 34.12 2.29
7 8 7.215789 TCATGTGTTTTGCATTCCTATGTTTT 58.784 30.769 0.00 0.00 34.12 2.43
8 9 6.757237 TCATGTGTTTTGCATTCCTATGTTT 58.243 32.000 0.00 0.00 34.12 2.83
9 10 6.343716 TCATGTGTTTTGCATTCCTATGTT 57.656 33.333 0.00 0.00 34.12 2.71
10 11 5.981088 TCATGTGTTTTGCATTCCTATGT 57.019 34.783 0.00 0.00 34.12 2.29
11 12 6.256975 CCATTCATGTGTTTTGCATTCCTATG 59.743 38.462 0.00 0.00 34.76 2.23
12 13 6.154877 TCCATTCATGTGTTTTGCATTCCTAT 59.845 34.615 0.00 0.00 0.00 2.57
13 14 5.479724 TCCATTCATGTGTTTTGCATTCCTA 59.520 36.000 0.00 0.00 0.00 2.94
21 22 7.056002 CATGACATTCCATTCATGTGTTTTG 57.944 36.000 3.83 0.00 42.80 2.44
62 63 8.664798 TGTAGTCATCAAATAAACTCAAATCCG 58.335 33.333 0.00 0.00 0.00 4.18
116 118 7.062749 TGGTTAATCTAACATCCGCTCTAAT 57.937 36.000 0.00 0.00 40.39 1.73
121 123 5.290493 TCATGGTTAATCTAACATCCGCT 57.710 39.130 0.00 0.00 40.39 5.52
123 125 7.930217 ACATTTCATGGTTAATCTAACATCCG 58.070 34.615 0.00 0.00 40.39 4.18
136 138 8.570068 AACCGTTTATACTACATTTCATGGTT 57.430 30.769 0.00 0.00 33.60 3.67
137 139 9.841295 ATAACCGTTTATACTACATTTCATGGT 57.159 29.630 0.00 0.00 33.60 3.55
274 287 5.458452 CGCTTGTGTCTGATGCTTTTAAAAA 59.542 36.000 1.66 0.00 0.00 1.94
275 288 4.975502 CGCTTGTGTCTGATGCTTTTAAAA 59.024 37.500 0.00 0.00 0.00 1.52
276 289 4.536065 CGCTTGTGTCTGATGCTTTTAAA 58.464 39.130 0.00 0.00 0.00 1.52
277 290 3.609175 GCGCTTGTGTCTGATGCTTTTAA 60.609 43.478 0.00 0.00 0.00 1.52
278 291 2.095768 GCGCTTGTGTCTGATGCTTTTA 60.096 45.455 0.00 0.00 0.00 1.52
279 292 1.335324 GCGCTTGTGTCTGATGCTTTT 60.335 47.619 0.00 0.00 0.00 2.27
280 293 0.239347 GCGCTTGTGTCTGATGCTTT 59.761 50.000 0.00 0.00 0.00 3.51
281 294 0.604780 AGCGCTTGTGTCTGATGCTT 60.605 50.000 2.64 0.00 0.00 3.91
282 295 1.004080 AGCGCTTGTGTCTGATGCT 60.004 52.632 2.64 0.00 0.00 3.79
283 296 1.293963 TGAGCGCTTGTGTCTGATGC 61.294 55.000 13.26 0.00 0.00 3.91
284 297 1.366679 ATGAGCGCTTGTGTCTGATG 58.633 50.000 13.26 0.00 0.00 3.07
285 298 2.094026 TGTATGAGCGCTTGTGTCTGAT 60.094 45.455 13.26 0.00 0.00 2.90
286 299 1.272212 TGTATGAGCGCTTGTGTCTGA 59.728 47.619 13.26 0.00 0.00 3.27
287 300 1.391485 GTGTATGAGCGCTTGTGTCTG 59.609 52.381 13.26 0.00 0.00 3.51
288 301 1.000843 TGTGTATGAGCGCTTGTGTCT 59.999 47.619 13.26 0.00 0.00 3.41
289 302 1.126846 GTGTGTATGAGCGCTTGTGTC 59.873 52.381 13.26 0.00 0.00 3.67
290 303 1.148310 GTGTGTATGAGCGCTTGTGT 58.852 50.000 13.26 0.12 0.00 3.72
291 304 1.136252 GTGTGTGTATGAGCGCTTGTG 60.136 52.381 13.26 0.00 0.00 3.33
292 305 1.148310 GTGTGTGTATGAGCGCTTGT 58.852 50.000 13.26 5.98 0.00 3.16
293 306 1.147473 TGTGTGTGTATGAGCGCTTG 58.853 50.000 13.26 0.00 0.00 4.01
294 307 2.099141 ATGTGTGTGTATGAGCGCTT 57.901 45.000 13.26 0.00 0.00 4.68
295 308 2.959507 TATGTGTGTGTATGAGCGCT 57.040 45.000 11.27 11.27 0.00 5.92
296 309 3.370978 AGTTTATGTGTGTGTATGAGCGC 59.629 43.478 0.00 0.00 0.00 5.92
297 310 4.625311 TGAGTTTATGTGTGTGTATGAGCG 59.375 41.667 0.00 0.00 0.00 5.03
298 311 5.163854 GGTGAGTTTATGTGTGTGTATGAGC 60.164 44.000 0.00 0.00 0.00 4.26
299 312 5.351465 GGGTGAGTTTATGTGTGTGTATGAG 59.649 44.000 0.00 0.00 0.00 2.90
300 313 5.242434 GGGTGAGTTTATGTGTGTGTATGA 58.758 41.667 0.00 0.00 0.00 2.15
301 314 4.394920 GGGGTGAGTTTATGTGTGTGTATG 59.605 45.833 0.00 0.00 0.00 2.39
302 315 4.042311 TGGGGTGAGTTTATGTGTGTGTAT 59.958 41.667 0.00 0.00 0.00 2.29
303 316 3.391626 TGGGGTGAGTTTATGTGTGTGTA 59.608 43.478 0.00 0.00 0.00 2.90
304 317 2.173782 TGGGGTGAGTTTATGTGTGTGT 59.826 45.455 0.00 0.00 0.00 3.72
305 318 2.857483 TGGGGTGAGTTTATGTGTGTG 58.143 47.619 0.00 0.00 0.00 3.82
306 319 3.073798 TCATGGGGTGAGTTTATGTGTGT 59.926 43.478 0.00 0.00 31.80 3.72
307 320 3.684908 TCATGGGGTGAGTTTATGTGTG 58.315 45.455 0.00 0.00 31.80 3.82
308 321 4.335416 CTTCATGGGGTGAGTTTATGTGT 58.665 43.478 0.00 0.00 38.29 3.72
309 322 3.696051 CCTTCATGGGGTGAGTTTATGTG 59.304 47.826 0.00 0.00 38.29 3.21
310 323 3.877735 GCCTTCATGGGGTGAGTTTATGT 60.878 47.826 0.00 0.00 38.29 2.29
311 324 2.689983 GCCTTCATGGGGTGAGTTTATG 59.310 50.000 0.00 0.00 38.29 1.90
312 325 2.311542 TGCCTTCATGGGGTGAGTTTAT 59.688 45.455 0.00 0.00 38.29 1.40
313 326 1.707989 TGCCTTCATGGGGTGAGTTTA 59.292 47.619 0.00 0.00 38.29 2.01
314 327 0.482446 TGCCTTCATGGGGTGAGTTT 59.518 50.000 0.00 0.00 38.29 2.66
315 328 0.251341 GTGCCTTCATGGGGTGAGTT 60.251 55.000 0.00 0.00 38.29 3.01
316 329 1.380302 GTGCCTTCATGGGGTGAGT 59.620 57.895 0.00 0.00 38.29 3.41
317 330 1.746615 CGTGCCTTCATGGGGTGAG 60.747 63.158 0.00 0.00 38.29 3.51
318 331 2.350895 CGTGCCTTCATGGGGTGA 59.649 61.111 0.00 0.00 36.00 4.02
319 332 3.443045 GCGTGCCTTCATGGGGTG 61.443 66.667 0.00 0.00 36.00 4.61
320 333 3.965258 TGCGTGCCTTCATGGGGT 61.965 61.111 0.00 0.00 36.00 4.95
321 334 3.443045 GTGCGTGCCTTCATGGGG 61.443 66.667 0.00 0.00 36.00 4.96
322 335 3.803082 CGTGCGTGCCTTCATGGG 61.803 66.667 0.00 0.00 36.00 4.00
323 336 4.465512 GCGTGCGTGCCTTCATGG 62.466 66.667 0.00 0.00 39.35 3.66
324 337 3.725459 TGCGTGCGTGCCTTCATG 61.725 61.111 0.00 0.00 0.00 3.07
325 338 3.726517 GTGCGTGCGTGCCTTCAT 61.727 61.111 0.00 0.00 0.00 2.57
335 348 2.697761 TAGGAGGAGACGTGCGTGC 61.698 63.158 0.67 0.00 0.00 5.34
336 349 1.136984 GTAGGAGGAGACGTGCGTG 59.863 63.158 0.67 0.00 0.00 5.34
337 350 0.251354 TAGTAGGAGGAGACGTGCGT 59.749 55.000 0.00 0.00 0.00 5.24
338 351 1.376543 TTAGTAGGAGGAGACGTGCG 58.623 55.000 0.00 0.00 0.00 5.34
339 352 3.771798 CTTTTAGTAGGAGGAGACGTGC 58.228 50.000 0.00 0.00 0.00 5.34
340 353 3.731264 CGCTTTTAGTAGGAGGAGACGTG 60.731 52.174 0.00 0.00 0.00 4.49
341 354 2.422832 CGCTTTTAGTAGGAGGAGACGT 59.577 50.000 0.00 0.00 0.00 4.34
342 355 2.795331 GCGCTTTTAGTAGGAGGAGACG 60.795 54.545 0.00 0.00 0.00 4.18
343 356 2.165845 TGCGCTTTTAGTAGGAGGAGAC 59.834 50.000 9.73 0.00 0.00 3.36
344 357 2.453521 TGCGCTTTTAGTAGGAGGAGA 58.546 47.619 9.73 0.00 0.00 3.71
345 358 2.961526 TGCGCTTTTAGTAGGAGGAG 57.038 50.000 9.73 0.00 0.00 3.69
346 359 2.223735 CGATGCGCTTTTAGTAGGAGGA 60.224 50.000 9.73 0.00 0.00 3.71
347 360 2.128035 CGATGCGCTTTTAGTAGGAGG 58.872 52.381 9.73 0.00 0.00 4.30
361 374 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
362 375 1.095228 TTGAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
363 376 1.378531 TTTGAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
364 377 2.348411 ATTTGAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
365 378 2.992124 TATTTGAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
366 379 4.568152 ATTTATTTGAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
367 380 5.901552 TGAATTTATTTGAGGATTTCCGGC 58.098 37.500 0.00 0.00 42.08 6.13
368 381 6.321181 TCCTGAATTTATTTGAGGATTTCCGG 59.679 38.462 0.00 0.00 42.08 5.14
369 382 7.333528 TCCTGAATTTATTTGAGGATTTCCG 57.666 36.000 0.00 0.00 42.08 4.30
375 388 8.352201 CGCATTATTCCTGAATTTATTTGAGGA 58.648 33.333 0.00 0.00 32.50 3.71
376 389 8.352201 TCGCATTATTCCTGAATTTATTTGAGG 58.648 33.333 0.00 0.00 32.50 3.86
377 390 9.390795 CTCGCATTATTCCTGAATTTATTTGAG 57.609 33.333 0.00 0.00 32.50 3.02
378 391 7.862372 GCTCGCATTATTCCTGAATTTATTTGA 59.138 33.333 0.00 0.00 32.50 2.69
379 392 7.648908 TGCTCGCATTATTCCTGAATTTATTTG 59.351 33.333 0.00 0.00 32.50 2.32
380 393 7.649306 GTGCTCGCATTATTCCTGAATTTATTT 59.351 33.333 0.00 0.00 32.50 1.40
381 394 7.141363 GTGCTCGCATTATTCCTGAATTTATT 58.859 34.615 0.00 0.00 32.50 1.40
382 395 6.294176 GGTGCTCGCATTATTCCTGAATTTAT 60.294 38.462 0.00 0.00 32.50 1.40
383 396 5.008613 GGTGCTCGCATTATTCCTGAATTTA 59.991 40.000 0.00 0.00 32.50 1.40
384 397 4.202050 GGTGCTCGCATTATTCCTGAATTT 60.202 41.667 0.00 0.00 32.50 1.82
385 398 3.316308 GGTGCTCGCATTATTCCTGAATT 59.684 43.478 0.00 0.00 32.50 2.17
386 399 2.880890 GGTGCTCGCATTATTCCTGAAT 59.119 45.455 0.00 0.00 34.93 2.57
387 400 2.288666 GGTGCTCGCATTATTCCTGAA 58.711 47.619 0.00 0.00 0.00 3.02
388 401 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
389 402 1.667236 TGGTGCTCGCATTATTCCTG 58.333 50.000 0.00 0.00 0.00 3.86
390 403 2.092968 TCTTGGTGCTCGCATTATTCCT 60.093 45.455 0.00 0.00 0.00 3.36
391 404 2.288666 TCTTGGTGCTCGCATTATTCC 58.711 47.619 0.00 0.00 0.00 3.01
392 405 4.558538 AATCTTGGTGCTCGCATTATTC 57.441 40.909 0.00 0.00 0.00 1.75
393 406 4.398988 TCAAATCTTGGTGCTCGCATTATT 59.601 37.500 0.00 0.00 0.00 1.40
394 407 3.947196 TCAAATCTTGGTGCTCGCATTAT 59.053 39.130 0.00 0.00 0.00 1.28
395 408 3.342719 TCAAATCTTGGTGCTCGCATTA 58.657 40.909 0.00 0.00 0.00 1.90
396 409 2.161855 TCAAATCTTGGTGCTCGCATT 58.838 42.857 0.00 0.00 0.00 3.56
397 410 1.825090 TCAAATCTTGGTGCTCGCAT 58.175 45.000 0.00 0.00 0.00 4.73
398 411 1.266718 GTTCAAATCTTGGTGCTCGCA 59.733 47.619 0.00 0.00 0.00 5.10
399 412 1.401539 GGTTCAAATCTTGGTGCTCGC 60.402 52.381 0.00 0.00 0.00 5.03
400 413 1.200020 GGGTTCAAATCTTGGTGCTCG 59.800 52.381 0.00 0.00 0.00 5.03
401 414 2.229784 CAGGGTTCAAATCTTGGTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
402 415 2.158475 TCAGGGTTCAAATCTTGGTGCT 60.158 45.455 0.00 0.00 0.00 4.40
403 416 2.029918 GTCAGGGTTCAAATCTTGGTGC 60.030 50.000 0.00 0.00 0.00 5.01
404 417 3.254166 CAGTCAGGGTTCAAATCTTGGTG 59.746 47.826 0.00 0.00 0.00 4.17
405 418 3.490348 CAGTCAGGGTTCAAATCTTGGT 58.510 45.455 0.00 0.00 0.00 3.67
406 419 2.821969 CCAGTCAGGGTTCAAATCTTGG 59.178 50.000 0.00 0.00 0.00 3.61
407 420 3.490348 ACCAGTCAGGGTTCAAATCTTG 58.510 45.455 0.00 0.00 43.89 3.02
408 421 3.884037 ACCAGTCAGGGTTCAAATCTT 57.116 42.857 0.00 0.00 43.89 2.40
417 430 3.631865 GGGGTATACTAACCAGTCAGGGT 60.632 52.174 2.25 0.00 45.04 4.34
418 431 2.970640 GGGGTATACTAACCAGTCAGGG 59.029 54.545 2.25 0.00 43.89 4.45
419 432 3.641906 CAGGGGTATACTAACCAGTCAGG 59.358 52.174 2.25 0.00 41.67 3.86
420 433 4.287552 ACAGGGGTATACTAACCAGTCAG 58.712 47.826 2.25 0.00 41.67 3.51
421 434 4.284178 GACAGGGGTATACTAACCAGTCA 58.716 47.826 20.94 0.00 41.67 3.41
422 435 3.640498 GGACAGGGGTATACTAACCAGTC 59.360 52.174 19.24 19.24 41.67 3.51
423 436 3.013188 TGGACAGGGGTATACTAACCAGT 59.987 47.826 2.25 6.24 41.67 4.00
424 437 3.387050 GTGGACAGGGGTATACTAACCAG 59.613 52.174 2.25 3.23 41.67 4.00
425 438 3.377573 GTGGACAGGGGTATACTAACCA 58.622 50.000 2.25 2.46 41.67 3.67
426 439 2.702478 GGTGGACAGGGGTATACTAACC 59.298 54.545 2.25 3.49 38.94 2.85
427 440 3.650948 AGGTGGACAGGGGTATACTAAC 58.349 50.000 2.25 0.00 0.00 2.34
428 441 5.211201 GTTAGGTGGACAGGGGTATACTAA 58.789 45.833 2.25 0.00 0.00 2.24
429 442 4.387891 GGTTAGGTGGACAGGGGTATACTA 60.388 50.000 2.25 0.00 0.00 1.82
430 443 3.631865 GGTTAGGTGGACAGGGGTATACT 60.632 52.174 2.25 0.00 0.00 2.12
431 444 2.702478 GGTTAGGTGGACAGGGGTATAC 59.298 54.545 0.00 0.00 0.00 1.47
432 445 2.318514 TGGTTAGGTGGACAGGGGTATA 59.681 50.000 0.00 0.00 0.00 1.47
433 446 1.081513 TGGTTAGGTGGACAGGGGTAT 59.918 52.381 0.00 0.00 0.00 2.73
434 447 0.492730 TGGTTAGGTGGACAGGGGTA 59.507 55.000 0.00 0.00 0.00 3.69
435 448 0.178843 ATGGTTAGGTGGACAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
436 449 0.546598 GATGGTTAGGTGGACAGGGG 59.453 60.000 0.00 0.00 0.00 4.79
437 450 1.584724 AGATGGTTAGGTGGACAGGG 58.415 55.000 0.00 0.00 0.00 4.45
438 451 4.514401 GTTAAGATGGTTAGGTGGACAGG 58.486 47.826 0.00 0.00 0.00 4.00
439 452 4.019681 TGGTTAAGATGGTTAGGTGGACAG 60.020 45.833 0.00 0.00 0.00 3.51
440 453 3.911260 TGGTTAAGATGGTTAGGTGGACA 59.089 43.478 0.00 0.00 0.00 4.02
441 454 4.259356 GTGGTTAAGATGGTTAGGTGGAC 58.741 47.826 0.00 0.00 0.00 4.02
442 455 3.911260 TGTGGTTAAGATGGTTAGGTGGA 59.089 43.478 0.00 0.00 0.00 4.02
443 456 4.261801 CTGTGGTTAAGATGGTTAGGTGG 58.738 47.826 0.00 0.00 0.00 4.61
444 457 4.261801 CCTGTGGTTAAGATGGTTAGGTG 58.738 47.826 0.00 0.00 0.00 4.00
445 458 3.914435 ACCTGTGGTTAAGATGGTTAGGT 59.086 43.478 0.00 0.00 27.29 3.08
446 459 4.569719 ACCTGTGGTTAAGATGGTTAGG 57.430 45.455 0.00 0.00 27.29 2.69
447 460 4.700213 CCAACCTGTGGTTAAGATGGTTAG 59.300 45.833 1.34 0.00 45.01 2.34
448 461 4.658063 CCAACCTGTGGTTAAGATGGTTA 58.342 43.478 1.34 0.00 45.01 2.85
449 462 3.496331 CCAACCTGTGGTTAAGATGGTT 58.504 45.455 1.34 0.00 45.01 3.67
450 463 3.154827 CCAACCTGTGGTTAAGATGGT 57.845 47.619 1.34 0.00 45.01 3.55
461 474 2.198827 TCATAGCCAACCAACCTGTG 57.801 50.000 0.00 0.00 0.00 3.66
462 475 2.969821 TTCATAGCCAACCAACCTGT 57.030 45.000 0.00 0.00 0.00 4.00
463 476 4.675146 CGAATTTCATAGCCAACCAACCTG 60.675 45.833 0.00 0.00 0.00 4.00
464 477 3.443681 CGAATTTCATAGCCAACCAACCT 59.556 43.478 0.00 0.00 0.00 3.50
465 478 3.192633 ACGAATTTCATAGCCAACCAACC 59.807 43.478 0.00 0.00 0.00 3.77
466 479 4.434713 ACGAATTTCATAGCCAACCAAC 57.565 40.909 0.00 0.00 0.00 3.77
467 480 5.461032 AAACGAATTTCATAGCCAACCAA 57.539 34.783 0.00 0.00 0.00 3.67
468 481 5.461032 AAAACGAATTTCATAGCCAACCA 57.539 34.783 0.00 0.00 0.00 3.67
488 501 8.865090 TGTTCATGAGGCCTTTTCTATTAAAAA 58.135 29.630 6.77 0.00 0.00 1.94
492 505 7.118723 ACATGTTCATGAGGCCTTTTCTATTA 58.881 34.615 6.77 0.00 0.00 0.98
506 519 1.744522 CATGCCCGAACATGTTCATGA 59.255 47.619 32.06 16.48 42.05 3.07
508 521 2.127271 TCATGCCCGAACATGTTCAT 57.873 45.000 32.06 18.98 46.15 2.57
536 549 0.755686 TTGCCCGATGGTTGCTTTTT 59.244 45.000 0.00 0.00 0.00 1.94
537 550 0.318120 CTTGCCCGATGGTTGCTTTT 59.682 50.000 0.00 0.00 0.00 2.27
538 551 0.827507 ACTTGCCCGATGGTTGCTTT 60.828 50.000 0.00 0.00 0.00 3.51
540 553 1.973281 CACTTGCCCGATGGTTGCT 60.973 57.895 0.00 0.00 0.00 3.91
541 554 0.958382 TACACTTGCCCGATGGTTGC 60.958 55.000 0.00 0.00 0.00 4.17
542 555 0.802494 GTACACTTGCCCGATGGTTG 59.198 55.000 0.00 0.00 0.00 3.77
543 556 0.398696 TGTACACTTGCCCGATGGTT 59.601 50.000 0.00 0.00 0.00 3.67
555 588 0.179073 GCGCTCATGGGATGTACACT 60.179 55.000 0.00 0.00 0.00 3.55
742 794 0.529119 GGTGAGGTTGTCGTGTTCGT 60.529 55.000 0.00 0.00 38.33 3.85
764 816 1.959226 CGGTGGTTTCGTGAGGGTG 60.959 63.158 0.00 0.00 0.00 4.61
767 819 1.374252 CTCCGGTGGTTTCGTGAGG 60.374 63.158 0.00 0.00 0.00 3.86
789 841 0.391661 GAGATCGCTGCAGTTTGGGA 60.392 55.000 16.64 4.09 0.00 4.37
818 871 3.911698 ACACTGACGCGGTGCTCA 61.912 61.111 12.47 3.66 43.84 4.26
826 879 2.279252 ACGGTGACACACTGACGC 60.279 61.111 16.07 0.00 42.79 5.19
828 881 2.589890 GTCACGGTGACACACTGAC 58.410 57.895 30.78 15.34 46.22 3.51
852 909 6.019881 GGCAATTCATTCCGTGTTTAAATAGC 60.020 38.462 0.00 0.00 0.00 2.97
865 922 3.854286 CGTAGTACGGCAATTCATTCC 57.146 47.619 15.02 0.00 38.08 3.01
912 969 1.097547 ACAGAGTGTGGTGCTGTTGC 61.098 55.000 0.00 0.00 39.69 4.17
913 970 0.940126 GACAGAGTGTGGTGCTGTTG 59.060 55.000 0.00 0.00 42.47 3.33
914 971 0.541392 TGACAGAGTGTGGTGCTGTT 59.459 50.000 0.00 0.00 42.47 3.16
915 972 0.179073 GTGACAGAGTGTGGTGCTGT 60.179 55.000 0.00 0.00 44.87 4.40
916 973 0.179076 TGTGACAGAGTGTGGTGCTG 60.179 55.000 0.00 0.00 35.81 4.41
917 974 0.761187 ATGTGACAGAGTGTGGTGCT 59.239 50.000 0.00 0.00 0.00 4.40
918 975 1.597742 AATGTGACAGAGTGTGGTGC 58.402 50.000 0.00 0.00 0.00 5.01
920 977 2.358898 GCAAAATGTGACAGAGTGTGGT 59.641 45.455 0.00 0.00 0.00 4.16
921 978 2.620115 AGCAAAATGTGACAGAGTGTGG 59.380 45.455 0.00 0.00 0.00 4.17
922 979 3.605461 CGAGCAAAATGTGACAGAGTGTG 60.605 47.826 0.00 0.00 0.00 3.82
923 980 2.545526 CGAGCAAAATGTGACAGAGTGT 59.454 45.455 0.00 0.00 0.00 3.55
924 981 2.663879 GCGAGCAAAATGTGACAGAGTG 60.664 50.000 0.00 0.00 0.00 3.51
925 982 1.532868 GCGAGCAAAATGTGACAGAGT 59.467 47.619 0.00 0.00 0.00 3.24
926 983 1.802960 AGCGAGCAAAATGTGACAGAG 59.197 47.619 0.00 0.00 0.00 3.35
927 984 1.800586 GAGCGAGCAAAATGTGACAGA 59.199 47.619 0.00 0.00 0.00 3.41
928 985 1.532437 TGAGCGAGCAAAATGTGACAG 59.468 47.619 0.00 0.00 0.00 3.51
929 986 1.532437 CTGAGCGAGCAAAATGTGACA 59.468 47.619 0.00 0.00 0.00 3.58
930 987 1.532868 ACTGAGCGAGCAAAATGTGAC 59.467 47.619 0.00 0.00 0.00 3.67
964 1022 0.824109 CTGATCGACCAGGCTACCAA 59.176 55.000 0.00 0.00 0.00 3.67
966 1024 1.688772 TACTGATCGACCAGGCTACC 58.311 55.000 12.49 0.00 38.44 3.18
975 1038 4.563184 CCAAGCTTACTGTTACTGATCGAC 59.437 45.833 0.00 0.00 0.00 4.20
986 1049 1.442769 CGACATGCCAAGCTTACTGT 58.557 50.000 0.00 0.06 0.00 3.55
1251 1320 1.955080 GAGTAGGACATCCGGTTCGAT 59.045 52.381 0.00 0.00 42.08 3.59
1256 1325 3.209091 CTGGAGTAGGACATCCGGT 57.791 57.895 0.00 0.00 42.08 5.28
1296 1365 3.936203 ACCTTCTTGACCGCGCCA 61.936 61.111 0.00 0.00 0.00 5.69
1426 1495 2.176273 CGCCTTTCTCCCGCATCTG 61.176 63.158 0.00 0.00 0.00 2.90
1623 1692 0.329261 TGTTGGGCTCCATCTGGAAG 59.671 55.000 0.00 0.00 44.91 3.46
1788 1857 4.070552 AGCAGCGTCTTCCCCGTC 62.071 66.667 0.00 0.00 0.00 4.79
2398 2467 4.760047 GCCGTCGGTCATGCTGGT 62.760 66.667 13.94 0.00 0.00 4.00
2477 2546 0.904865 ACGAGAAGAGGGATGGTGCA 60.905 55.000 0.00 0.00 0.00 4.57
2481 2553 2.028112 TGTCAAACGAGAAGAGGGATGG 60.028 50.000 0.00 0.00 0.00 3.51
2491 2563 6.464222 AGAGAAATAATGGTGTCAAACGAGA 58.536 36.000 0.00 0.00 0.00 4.04
2526 2598 4.401022 TGCAGTTGAATCCATCAGTCTTT 58.599 39.130 0.00 0.00 39.77 2.52
2536 2608 1.523758 AACGTCCTGCAGTTGAATCC 58.476 50.000 13.81 0.00 0.00 3.01
2542 2614 2.244651 GCGTCAACGTCCTGCAGTT 61.245 57.895 13.81 0.00 42.22 3.16
2573 2645 3.414700 GCGTCACCTTCTGCACCG 61.415 66.667 0.00 0.00 0.00 4.94
2613 2685 2.526873 AGGAACCACGTCAGGCCT 60.527 61.111 0.00 0.00 0.00 5.19
2949 3021 1.215647 CTTGGCGACCTCGTAAGCT 59.784 57.895 0.00 0.00 42.22 3.74
2952 3024 2.263540 GCCTTGGCGACCTCGTAA 59.736 61.111 0.00 0.00 42.22 3.18
3083 3155 1.896694 GTGTCCCTCTGCTCTCTGG 59.103 63.158 0.00 0.00 0.00 3.86
3142 3214 4.731773 GCCTGCAATACACAATTCTACTGC 60.732 45.833 0.00 0.00 0.00 4.40
3158 3230 1.549243 TATCGTCCCACAGCCTGCAA 61.549 55.000 0.00 0.00 0.00 4.08
3164 3237 2.751166 ATATGCTATCGTCCCACAGC 57.249 50.000 0.00 0.00 34.56 4.40
3248 4032 8.730680 ACCTGCTTGTATGACAAAAATTACTAG 58.269 33.333 0.00 0.00 37.69 2.57
3261 4045 4.253685 GAGCTAAACACCTGCTTGTATGA 58.746 43.478 0.00 0.00 37.16 2.15
3282 4066 6.417258 TCAGTTATGATGGCAGAAGAATTGA 58.583 36.000 0.00 0.00 0.00 2.57
3332 4157 4.097286 GCCCAAGTGTTTCTTCAGTTACAA 59.903 41.667 0.00 0.00 33.63 2.41
3333 4158 3.630312 GCCCAAGTGTTTCTTCAGTTACA 59.370 43.478 0.00 0.00 33.63 2.41
3334 4159 3.883489 AGCCCAAGTGTTTCTTCAGTTAC 59.117 43.478 0.00 0.00 33.63 2.50
3335 4160 4.164843 AGCCCAAGTGTTTCTTCAGTTA 57.835 40.909 0.00 0.00 33.63 2.24
3336 4161 3.018423 AGCCCAAGTGTTTCTTCAGTT 57.982 42.857 0.00 0.00 33.63 3.16
3337 4162 2.736670 AGCCCAAGTGTTTCTTCAGT 57.263 45.000 0.00 0.00 33.63 3.41
3338 4163 4.074970 ACATAGCCCAAGTGTTTCTTCAG 58.925 43.478 0.00 0.00 33.63 3.02
3339 4164 4.098914 ACATAGCCCAAGTGTTTCTTCA 57.901 40.909 0.00 0.00 33.63 3.02
3357 4182 1.560923 GCAGAACGTCTCGCATACAT 58.439 50.000 0.00 0.00 0.00 2.29
3358 4183 0.796870 CGCAGAACGTCTCGCATACA 60.797 55.000 0.00 0.00 36.87 2.29
3371 4210 4.794278 TCCAAGTACTATTGACGCAGAA 57.206 40.909 0.00 0.00 31.55 3.02
3377 4216 5.931441 GGATGCATCCAAGTACTATTGAC 57.069 43.478 35.93 7.40 46.38 3.18
3396 4235 0.846427 TGGCTCTTGAACCTGGGGAT 60.846 55.000 0.00 0.00 0.00 3.85
3420 4259 2.413837 GCCAGCTACAAAAAGAGACGA 58.586 47.619 0.00 0.00 0.00 4.20
3558 4397 3.793144 GCAGGCAAGGCGAACGAG 61.793 66.667 0.00 0.00 0.00 4.18
3592 4431 0.740868 CTGCGATGTCGGTCATGGTT 60.741 55.000 4.44 0.00 40.23 3.67
3625 4464 5.000591 TGCTAGAAATTCACATCCGTTTCA 58.999 37.500 0.00 0.00 34.02 2.69
3631 4470 6.765036 TCTGAATCTGCTAGAAATTCACATCC 59.235 38.462 9.50 0.00 35.17 3.51
3632 4471 7.783090 TCTGAATCTGCTAGAAATTCACATC 57.217 36.000 9.50 0.00 35.17 3.06
3633 4472 8.749026 ATTCTGAATCTGCTAGAAATTCACAT 57.251 30.769 9.50 4.66 35.17 3.21
3634 4473 7.825761 TGATTCTGAATCTGCTAGAAATTCACA 59.174 33.333 25.83 3.26 38.72 3.58
3636 4475 8.262933 TCTGATTCTGAATCTGCTAGAAATTCA 58.737 33.333 25.83 11.84 38.72 2.57
3637 4476 8.659925 TCTGATTCTGAATCTGCTAGAAATTC 57.340 34.615 25.83 0.00 38.72 2.17
3638 4477 8.484575 TCTCTGATTCTGAATCTGCTAGAAATT 58.515 33.333 25.83 0.00 38.72 1.82
3639 4478 8.020777 TCTCTGATTCTGAATCTGCTAGAAAT 57.979 34.615 25.83 0.00 38.72 2.17
3640 4479 7.415592 TCTCTGATTCTGAATCTGCTAGAAA 57.584 36.000 25.83 9.01 38.72 2.52
3641 4480 7.600231 ATCTCTGATTCTGAATCTGCTAGAA 57.400 36.000 25.83 11.75 38.72 2.10
3642 4481 7.394077 CCTATCTCTGATTCTGAATCTGCTAGA 59.606 40.741 25.83 22.83 38.72 2.43
3645 4487 6.076653 TCCTATCTCTGATTCTGAATCTGCT 58.923 40.000 25.83 16.66 38.72 4.24
3716 4558 2.701073 CAAGCTGAAGAGTTTGCAGG 57.299 50.000 0.00 0.00 34.16 4.85
3723 4565 1.357258 CGCATCGCAAGCTGAAGAGT 61.357 55.000 0.00 0.00 34.90 3.24
3749 4591 3.807073 GCAGAGAGCTTGGGATTCCCC 62.807 61.905 19.36 3.80 46.47 4.81
3843 4685 2.127345 ACGTTCGAGCTCGTGTCG 60.127 61.111 33.33 31.64 38.85 4.35
3858 4700 0.102120 GATCAGAGAGGGTGCTGACG 59.898 60.000 0.00 0.00 43.26 4.35
3879 4721 1.354040 CCATGAGAACAGACTGCGTC 58.646 55.000 1.25 0.22 0.00 5.19
3884 4726 1.609061 CCAACGCCATGAGAACAGACT 60.609 52.381 0.00 0.00 0.00 3.24
3890 4732 0.035152 AGCATCCAACGCCATGAGAA 60.035 50.000 0.00 0.00 0.00 2.87
3903 4745 1.522580 GGAGAACGGAGCAGCATCC 60.523 63.158 0.00 0.00 35.88 3.51
3906 4748 2.973899 GAGGAGAACGGAGCAGCA 59.026 61.111 0.00 0.00 0.00 4.41
3935 4777 2.592308 GGAAGGGGCTGCCACTAG 59.408 66.667 26.29 0.00 35.40 2.57
3944 4786 0.912006 AGAAGAGAGTGGGAAGGGGC 60.912 60.000 0.00 0.00 0.00 5.80
3984 4826 0.621571 TGAGGTGCTGGGAGGCTATT 60.622 55.000 0.00 0.00 0.00 1.73
4053 4895 1.818785 GCATGCAGCTCCCTGTCTC 60.819 63.158 14.21 0.00 41.26 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.