Multiple sequence alignment - TraesCS7B01G093300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G093300 chr7B 100.000 6373 0 0 1 6373 106944174 106950546 0.000000e+00 11769
1 TraesCS7B01G093300 chr7A 96.718 2590 77 7 905 3488 144611332 144608745 0.000000e+00 4305
2 TraesCS7B01G093300 chr7A 94.635 1454 63 8 3952 5391 144607812 144606360 0.000000e+00 2239
3 TraesCS7B01G093300 chr7A 95.521 826 33 3 5552 6373 144605473 144604648 0.000000e+00 1317
4 TraesCS7B01G093300 chr7A 86.029 272 27 6 369 630 709259903 709259633 1.350000e-71 281
5 TraesCS7B01G093300 chr7A 91.765 170 13 1 658 826 156116005 156115836 1.070000e-57 235
6 TraesCS7B01G093300 chr7A 93.939 66 3 1 3849 3914 144607881 144607817 1.460000e-16 99
7 TraesCS7B01G093300 chr7D 96.769 2538 66 9 963 3488 142619224 142616691 0.000000e+00 4218
8 TraesCS7B01G093300 chr7D 93.078 1488 85 8 3906 5379 142614113 142612630 0.000000e+00 2161
9 TraesCS7B01G093300 chr7D 95.269 930 39 2 5449 6373 142612542 142611613 0.000000e+00 1469
10 TraesCS7B01G093300 chr7D 94.444 252 11 2 3613 3862 142615540 142615290 1.000000e-102 385
11 TraesCS7B01G093300 chr7D 98.851 87 0 1 3829 3915 142615291 142615206 3.080000e-33 154
12 TraesCS7B01G093300 chr2D 85.759 646 76 13 1 635 306254390 306253750 0.000000e+00 669
13 TraesCS7B01G093300 chr2D 84.084 666 74 17 2 636 484044327 484044991 1.170000e-171 614
14 TraesCS7B01G093300 chr2D 83.735 664 74 22 2 634 576579213 576579873 1.180000e-166 597
15 TraesCS7B01G093300 chr2D 83.158 665 79 17 2 634 484018830 484019493 1.540000e-160 577
16 TraesCS7B01G093300 chr2D 85.942 377 48 5 2 374 16770703 16770328 1.290000e-106 398
17 TraesCS7B01G093300 chr2D 92.216 167 13 0 659 825 18758108 18758274 2.970000e-58 237
18 TraesCS7B01G093300 chr1D 85.174 661 65 16 1 630 181631148 181630490 0.000000e+00 647
19 TraesCS7B01G093300 chr1D 87.533 377 43 4 1 374 30442970 30443345 3.530000e-117 433
20 TraesCS7B01G093300 chr1D 85.978 271 23 9 374 632 120036912 120036645 6.290000e-70 276
21 TraesCS7B01G093300 chr1D 85.448 268 30 6 374 633 30443381 30443647 2.930000e-68 270
22 TraesCS7B01G093300 chr1A 84.234 666 71 19 1 634 176453719 176453056 9.080000e-173 617
23 TraesCS7B01G093300 chr1A 82.628 662 82 17 1 632 77283789 77284447 7.220000e-154 555
24 TraesCS7B01G093300 chr2A 84.187 664 73 18 2 634 714526325 714526987 3.260000e-172 616
25 TraesCS7B01G093300 chr2A 85.393 267 28 6 374 632 113933907 113933644 3.790000e-67 267
26 TraesCS7B01G093300 chr3D 83.609 665 74 19 2 634 594744927 594745588 5.500000e-165 592
27 TraesCS7B01G093300 chr3D 92.353 170 13 0 659 828 22383437 22383606 6.380000e-60 243
28 TraesCS7B01G093300 chr3D 91.716 169 14 0 659 827 105119306 105119474 1.070000e-57 235
29 TraesCS7B01G093300 chr3D 90.805 174 16 0 658 831 131406694 131406521 3.840000e-57 233
30 TraesCS7B01G093300 chr5D 82.831 664 80 20 2 634 403642605 403641945 1.200000e-156 564
31 TraesCS7B01G093300 chr3B 84.364 275 31 6 374 638 672541623 672541895 6.340000e-65 259
32 TraesCS7B01G093300 chr5A 91.765 170 14 0 655 824 630923725 630923894 2.970000e-58 237
33 TraesCS7B01G093300 chr6A 92.169 166 13 0 658 823 328167587 328167422 1.070000e-57 235
34 TraesCS7B01G093300 chr4D 92.216 167 12 1 659 825 486769355 486769190 1.070000e-57 235
35 TraesCS7B01G093300 chrUn 90.341 176 16 1 650 824 112299391 112299216 4.970000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G093300 chr7B 106944174 106950546 6372 False 11769.0 11769 100.00000 1 6373 1 chr7B.!!$F1 6372
1 TraesCS7B01G093300 chr7A 144604648 144611332 6684 True 1990.0 4305 95.20325 905 6373 4 chr7A.!!$R3 5468
2 TraesCS7B01G093300 chr7D 142611613 142619224 7611 True 1677.4 4218 95.68220 963 6373 5 chr7D.!!$R1 5410
3 TraesCS7B01G093300 chr2D 306253750 306254390 640 True 669.0 669 85.75900 1 635 1 chr2D.!!$R2 634
4 TraesCS7B01G093300 chr2D 484044327 484044991 664 False 614.0 614 84.08400 2 636 1 chr2D.!!$F3 634
5 TraesCS7B01G093300 chr2D 576579213 576579873 660 False 597.0 597 83.73500 2 634 1 chr2D.!!$F4 632
6 TraesCS7B01G093300 chr2D 484018830 484019493 663 False 577.0 577 83.15800 2 634 1 chr2D.!!$F2 632
7 TraesCS7B01G093300 chr1D 181630490 181631148 658 True 647.0 647 85.17400 1 630 1 chr1D.!!$R2 629
8 TraesCS7B01G093300 chr1D 30442970 30443647 677 False 351.5 433 86.49050 1 633 2 chr1D.!!$F1 632
9 TraesCS7B01G093300 chr1A 176453056 176453719 663 True 617.0 617 84.23400 1 634 1 chr1A.!!$R1 633
10 TraesCS7B01G093300 chr1A 77283789 77284447 658 False 555.0 555 82.62800 1 632 1 chr1A.!!$F1 631
11 TraesCS7B01G093300 chr2A 714526325 714526987 662 False 616.0 616 84.18700 2 634 1 chr2A.!!$F1 632
12 TraesCS7B01G093300 chr3D 594744927 594745588 661 False 592.0 592 83.60900 2 634 1 chr3D.!!$F3 632
13 TraesCS7B01G093300 chr5D 403641945 403642605 660 True 564.0 564 82.83100 2 634 1 chr5D.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 369 0.031616 AACTTGGCTTTGGGGGTGAA 60.032 50.0 0.00 0.0 0.0 3.18 F
957 1018 0.317854 GAAAAGCGCACACCTGAACC 60.318 55.0 11.47 0.0 0.0 3.62 F
2553 2617 0.037975 GTGGAAATGCTGGCCTTGTG 60.038 55.0 3.32 0.0 0.0 3.33 F
2872 2936 0.038744 AAGGTGGGGAAGTGCATCTG 59.961 55.0 0.00 0.0 0.0 2.90 F
4860 7167 0.035152 AGCATCCAACGCCATGAGAA 60.035 50.0 0.00 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1574 0.250640 ACCTGACCAGCAGCAAAGAG 60.251 55.0 0.00 0.0 43.50 2.85 R
2703 2767 0.325671 ATCCCCACACAGATCGGTCT 60.326 55.0 0.00 0.0 34.14 3.85 R
4391 6684 0.246360 TGATGTACGCCTGTCCACTG 59.754 55.0 0.00 0.0 0.00 3.66 R
4866 7173 0.323816 ACCCTCTCTGATCTGACGCA 60.324 55.0 0.00 0.0 0.00 5.24 R
6196 9273 0.396435 TGGATTCAACTGCAGGACGT 59.604 50.0 19.93 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 2.363306 AGCCTGTTGTTGTTGGATCA 57.637 45.000 0.00 0.00 0.00 2.92
176 181 0.935196 ACGTCTTTGTCTTCCGTTGC 59.065 50.000 0.00 0.00 0.00 4.17
183 188 0.319555 TGTCTTCCGTTGCCTTCTCG 60.320 55.000 0.00 0.00 0.00 4.04
191 196 1.405821 CGTTGCCTTCTCGAGAGGTAT 59.594 52.381 21.56 0.00 0.00 2.73
234 241 2.904434 GACGGATAAGGGTGGATGGTAT 59.096 50.000 0.00 0.00 0.00 2.73
259 266 4.309099 ACGGCTTCAACAACGAGTTTATA 58.691 39.130 0.00 0.00 38.74 0.98
264 271 6.293244 GGCTTCAACAACGAGTTTATACACTT 60.293 38.462 0.00 0.00 38.74 3.16
301 308 1.681793 TCTCTACTTGGGCTATGTCGC 59.318 52.381 0.00 0.00 0.00 5.19
321 328 0.388006 CACGTGCCTATGTCGTGTCA 60.388 55.000 0.82 0.00 46.11 3.58
344 351 2.238521 GCTGAAGGTGGTGGATTGAAA 58.761 47.619 0.00 0.00 0.00 2.69
362 369 0.031616 AACTTGGCTTTGGGGGTGAA 60.032 50.000 0.00 0.00 0.00 3.18
413 458 2.007049 GCGGCGATTCCTTCTTGAAGA 61.007 52.381 12.98 0.00 0.00 2.87
414 459 2.555199 CGGCGATTCCTTCTTGAAGAT 58.445 47.619 0.00 0.00 0.00 2.40
422 467 4.478206 TCCTTCTTGAAGATGTAGCCTG 57.522 45.455 11.53 0.00 0.00 4.85
486 540 2.765135 GGTTAGTCTGGGGGAGTTACTC 59.235 54.545 3.36 3.36 30.34 2.59
529 585 7.262048 TCAGAGTTTGTTTTCCGCTTTATTTT 58.738 30.769 0.00 0.00 0.00 1.82
555 613 1.364626 GATGGTGTTCGGCTGCTGAG 61.365 60.000 11.52 0.00 0.00 3.35
611 669 3.790437 CAGATGCAGAGGCCGGGT 61.790 66.667 2.18 0.00 40.13 5.28
613 671 1.689233 AGATGCAGAGGCCGGGTTA 60.689 57.895 2.18 0.00 40.13 2.85
617 678 2.967946 GCAGAGGCCGGGTTACCTT 61.968 63.158 2.18 0.00 36.05 3.50
622 683 0.327259 AGGCCGGGTTACCTTCTTTC 59.673 55.000 2.18 0.00 29.74 2.62
668 729 6.113411 ACCTAACAAAAAGATACTCCATCCG 58.887 40.000 0.00 0.00 33.75 4.18
669 730 6.113411 CCTAACAAAAAGATACTCCATCCGT 58.887 40.000 0.00 0.00 33.75 4.69
670 731 6.598064 CCTAACAAAAAGATACTCCATCCGTT 59.402 38.462 0.00 0.00 33.75 4.44
671 732 6.496338 AACAAAAAGATACTCCATCCGTTC 57.504 37.500 0.00 0.00 33.75 3.95
672 733 4.941873 ACAAAAAGATACTCCATCCGTTCC 59.058 41.667 0.00 0.00 33.75 3.62
673 734 5.186198 CAAAAAGATACTCCATCCGTTCCT 58.814 41.667 0.00 0.00 33.75 3.36
674 735 6.070424 ACAAAAAGATACTCCATCCGTTCCTA 60.070 38.462 0.00 0.00 33.75 2.94
675 736 6.555463 AAAAGATACTCCATCCGTTCCTAA 57.445 37.500 0.00 0.00 33.75 2.69
676 737 6.555463 AAAGATACTCCATCCGTTCCTAAA 57.445 37.500 0.00 0.00 33.75 1.85
677 738 6.749036 AAGATACTCCATCCGTTCCTAAAT 57.251 37.500 0.00 0.00 33.75 1.40
678 739 6.102897 AGATACTCCATCCGTTCCTAAATG 57.897 41.667 0.00 0.00 33.75 2.32
679 740 5.602978 AGATACTCCATCCGTTCCTAAATGT 59.397 40.000 0.00 0.00 33.75 2.71
680 741 6.781014 AGATACTCCATCCGTTCCTAAATGTA 59.219 38.462 0.00 0.00 33.75 2.29
681 742 5.687166 ACTCCATCCGTTCCTAAATGTAA 57.313 39.130 0.00 0.00 0.00 2.41
682 743 5.671493 ACTCCATCCGTTCCTAAATGTAAG 58.329 41.667 0.00 0.00 0.00 2.34
683 744 5.189145 ACTCCATCCGTTCCTAAATGTAAGT 59.811 40.000 0.00 0.00 0.00 2.24
684 745 5.667466 TCCATCCGTTCCTAAATGTAAGTC 58.333 41.667 0.00 0.00 0.00 3.01
685 746 5.424252 TCCATCCGTTCCTAAATGTAAGTCT 59.576 40.000 0.00 0.00 0.00 3.24
686 747 6.070424 TCCATCCGTTCCTAAATGTAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
687 748 6.598064 CCATCCGTTCCTAAATGTAAGTCTTT 59.402 38.462 0.00 0.00 0.00 2.52
688 749 7.120726 CCATCCGTTCCTAAATGTAAGTCTTTT 59.879 37.037 0.00 0.00 0.00 2.27
689 750 8.512138 CATCCGTTCCTAAATGTAAGTCTTTTT 58.488 33.333 0.00 0.00 0.00 1.94
690 751 9.729281 ATCCGTTCCTAAATGTAAGTCTTTTTA 57.271 29.630 0.00 0.00 0.00 1.52
691 752 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
692 753 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
761 822 8.758633 TTAGAGTGTAGATTTACTCACTTTGC 57.241 34.615 7.09 0.00 44.41 3.68
762 823 6.998802 AGAGTGTAGATTTACTCACTTTGCT 58.001 36.000 7.09 0.00 44.41 3.91
763 824 7.093992 AGAGTGTAGATTTACTCACTTTGCTC 58.906 38.462 7.09 0.00 44.41 4.26
764 825 6.166982 AGTGTAGATTTACTCACTTTGCTCC 58.833 40.000 0.00 0.00 35.29 4.70
765 826 5.932303 GTGTAGATTTACTCACTTTGCTCCA 59.068 40.000 0.00 0.00 0.00 3.86
766 827 6.595716 GTGTAGATTTACTCACTTTGCTCCAT 59.404 38.462 0.00 0.00 0.00 3.41
767 828 7.764443 GTGTAGATTTACTCACTTTGCTCCATA 59.236 37.037 0.00 0.00 0.00 2.74
768 829 7.764443 TGTAGATTTACTCACTTTGCTCCATAC 59.236 37.037 0.00 0.00 0.00 2.39
769 830 5.812642 AGATTTACTCACTTTGCTCCATACG 59.187 40.000 0.00 0.00 0.00 3.06
770 831 4.530710 TTACTCACTTTGCTCCATACGT 57.469 40.909 0.00 0.00 0.00 3.57
771 832 5.648178 TTACTCACTTTGCTCCATACGTA 57.352 39.130 0.00 0.00 0.00 3.57
772 833 4.111375 ACTCACTTTGCTCCATACGTAG 57.889 45.455 0.08 0.00 0.00 3.51
774 835 4.106029 TCACTTTGCTCCATACGTAGTC 57.894 45.455 0.08 0.00 43.93 2.59
775 836 3.508402 TCACTTTGCTCCATACGTAGTCA 59.492 43.478 0.08 0.00 43.93 3.41
776 837 4.159693 TCACTTTGCTCCATACGTAGTCAT 59.840 41.667 0.08 0.00 43.93 3.06
777 838 4.870426 CACTTTGCTCCATACGTAGTCATT 59.130 41.667 0.08 0.00 43.93 2.57
778 839 5.351465 CACTTTGCTCCATACGTAGTCATTT 59.649 40.000 0.08 0.00 43.93 2.32
779 840 5.351465 ACTTTGCTCCATACGTAGTCATTTG 59.649 40.000 0.08 0.00 43.93 2.32
780 841 4.465632 TGCTCCATACGTAGTCATTTGT 57.534 40.909 0.08 0.00 43.93 2.83
781 842 4.827692 TGCTCCATACGTAGTCATTTGTT 58.172 39.130 0.08 0.00 43.93 2.83
782 843 4.629634 TGCTCCATACGTAGTCATTTGTTG 59.370 41.667 0.08 0.00 43.93 3.33
783 844 4.034048 GCTCCATACGTAGTCATTTGTTGG 59.966 45.833 0.08 0.38 43.93 3.77
784 845 5.408880 TCCATACGTAGTCATTTGTTGGA 57.591 39.130 0.08 3.01 43.93 3.53
785 846 5.795972 TCCATACGTAGTCATTTGTTGGAA 58.204 37.500 0.08 0.00 43.93 3.53
786 847 6.411376 TCCATACGTAGTCATTTGTTGGAAT 58.589 36.000 0.08 0.00 43.93 3.01
787 848 6.537301 TCCATACGTAGTCATTTGTTGGAATC 59.463 38.462 0.08 0.00 43.93 2.52
788 849 6.538742 CCATACGTAGTCATTTGTTGGAATCT 59.461 38.462 0.08 0.00 43.93 2.40
789 850 7.254455 CCATACGTAGTCATTTGTTGGAATCTC 60.254 40.741 0.08 0.00 43.93 2.75
790 851 5.794894 ACGTAGTCATTTGTTGGAATCTCT 58.205 37.500 0.00 0.00 29.74 3.10
791 852 6.931838 ACGTAGTCATTTGTTGGAATCTCTA 58.068 36.000 0.00 0.00 29.74 2.43
792 853 7.036220 ACGTAGTCATTTGTTGGAATCTCTAG 58.964 38.462 0.00 0.00 29.74 2.43
793 854 7.093902 ACGTAGTCATTTGTTGGAATCTCTAGA 60.094 37.037 0.00 0.00 29.74 2.43
794 855 7.759886 CGTAGTCATTTGTTGGAATCTCTAGAA 59.240 37.037 0.00 0.00 0.00 2.10
795 856 9.436957 GTAGTCATTTGTTGGAATCTCTAGAAA 57.563 33.333 0.00 0.00 0.00 2.52
814 875 9.991906 TCTAGAAATACTTATATTTGGGAACGG 57.008 33.333 0.00 0.00 40.42 4.44
815 876 9.991906 CTAGAAATACTTATATTTGGGAACGGA 57.008 33.333 0.00 0.00 40.42 4.69
816 877 8.904099 AGAAATACTTATATTTGGGAACGGAG 57.096 34.615 0.00 0.00 40.42 4.63
817 878 7.937394 AGAAATACTTATATTTGGGAACGGAGG 59.063 37.037 0.00 0.00 40.42 4.30
818 879 4.432980 ACTTATATTTGGGAACGGAGGG 57.567 45.455 0.00 0.00 0.00 4.30
819 880 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
820 881 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
821 882 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
822 883 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
823 884 1.272807 TTTGGGAACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
824 885 0.410663 TTGGGAACGGAGGGAGTAGA 59.589 55.000 0.00 0.00 0.00 2.59
825 886 0.635009 TGGGAACGGAGGGAGTAGAT 59.365 55.000 0.00 0.00 0.00 1.98
826 887 1.041437 GGGAACGGAGGGAGTAGATG 58.959 60.000 0.00 0.00 0.00 2.90
827 888 1.411216 GGGAACGGAGGGAGTAGATGA 60.411 57.143 0.00 0.00 0.00 2.92
828 889 1.957877 GGAACGGAGGGAGTAGATGAG 59.042 57.143 0.00 0.00 0.00 2.90
829 890 2.657143 GAACGGAGGGAGTAGATGAGT 58.343 52.381 0.00 0.00 0.00 3.41
830 891 3.434739 GGAACGGAGGGAGTAGATGAGTA 60.435 52.174 0.00 0.00 0.00 2.59
831 892 3.947612 ACGGAGGGAGTAGATGAGTAA 57.052 47.619 0.00 0.00 0.00 2.24
832 893 4.246712 ACGGAGGGAGTAGATGAGTAAA 57.753 45.455 0.00 0.00 0.00 2.01
833 894 4.208746 ACGGAGGGAGTAGATGAGTAAAG 58.791 47.826 0.00 0.00 0.00 1.85
834 895 4.208746 CGGAGGGAGTAGATGAGTAAAGT 58.791 47.826 0.00 0.00 0.00 2.66
835 896 4.036971 CGGAGGGAGTAGATGAGTAAAGTG 59.963 50.000 0.00 0.00 0.00 3.16
836 897 4.342665 GGAGGGAGTAGATGAGTAAAGTGG 59.657 50.000 0.00 0.00 0.00 4.00
837 898 4.290942 AGGGAGTAGATGAGTAAAGTGGG 58.709 47.826 0.00 0.00 0.00 4.61
838 899 4.031611 GGGAGTAGATGAGTAAAGTGGGT 58.968 47.826 0.00 0.00 0.00 4.51
839 900 4.099727 GGGAGTAGATGAGTAAAGTGGGTC 59.900 50.000 0.00 0.00 0.00 4.46
840 901 4.710375 GGAGTAGATGAGTAAAGTGGGTCA 59.290 45.833 0.00 0.00 0.00 4.02
841 902 5.364157 GGAGTAGATGAGTAAAGTGGGTCAT 59.636 44.000 0.00 0.00 32.24 3.06
842 903 6.227298 AGTAGATGAGTAAAGTGGGTCATG 57.773 41.667 0.00 0.00 29.66 3.07
843 904 4.494091 AGATGAGTAAAGTGGGTCATGG 57.506 45.455 0.00 0.00 29.66 3.66
844 905 4.104086 AGATGAGTAAAGTGGGTCATGGA 58.896 43.478 0.00 0.00 29.66 3.41
845 906 4.536090 AGATGAGTAAAGTGGGTCATGGAA 59.464 41.667 0.00 0.00 29.66 3.53
846 907 4.015872 TGAGTAAAGTGGGTCATGGAAC 57.984 45.455 0.00 0.00 0.00 3.62
865 926 6.904498 TGGAACACAAAAGTCATATTAACGG 58.096 36.000 0.00 0.00 0.00 4.44
866 927 6.072397 TGGAACACAAAAGTCATATTAACGGG 60.072 38.462 0.00 0.00 0.00 5.28
867 928 6.072342 GGAACACAAAAGTCATATTAACGGGT 60.072 38.462 0.00 0.00 0.00 5.28
868 929 6.887626 ACACAAAAGTCATATTAACGGGTT 57.112 33.333 0.00 0.00 0.00 4.11
869 930 7.279750 ACACAAAAGTCATATTAACGGGTTT 57.720 32.000 0.00 0.00 0.00 3.27
870 931 7.142680 ACACAAAAGTCATATTAACGGGTTTG 58.857 34.615 0.00 0.00 0.00 2.93
871 932 7.142680 CACAAAAGTCATATTAACGGGTTTGT 58.857 34.615 0.00 0.00 37.19 2.83
872 933 7.114247 CACAAAAGTCATATTAACGGGTTTGTG 59.886 37.037 18.12 18.12 43.69 3.33
873 934 6.887626 AAAGTCATATTAACGGGTTTGTGT 57.112 33.333 0.00 0.00 0.00 3.72
874 935 7.982761 AAAGTCATATTAACGGGTTTGTGTA 57.017 32.000 0.00 0.00 0.00 2.90
875 936 7.982761 AAGTCATATTAACGGGTTTGTGTAA 57.017 32.000 0.00 0.00 0.00 2.41
876 937 8.570068 AAGTCATATTAACGGGTTTGTGTAAT 57.430 30.769 0.00 0.00 0.00 1.89
877 938 9.669887 AAGTCATATTAACGGGTTTGTGTAATA 57.330 29.630 0.00 0.00 0.00 0.98
878 939 9.669887 AGTCATATTAACGGGTTTGTGTAATAA 57.330 29.630 0.00 0.00 0.00 1.40
884 945 9.984190 ATTAACGGGTTTGTGTAATAAAAACAT 57.016 25.926 0.00 0.00 35.88 2.71
885 946 9.813446 TTAACGGGTTTGTGTAATAAAAACATT 57.187 25.926 0.00 0.00 35.88 2.71
886 947 8.719560 AACGGGTTTGTGTAATAAAAACATTT 57.280 26.923 0.00 0.00 35.88 2.32
887 948 8.355272 ACGGGTTTGTGTAATAAAAACATTTC 57.645 30.769 0.00 0.00 35.88 2.17
888 949 8.198778 ACGGGTTTGTGTAATAAAAACATTTCT 58.801 29.630 0.00 0.00 35.88 2.52
889 950 9.680315 CGGGTTTGTGTAATAAAAACATTTCTA 57.320 29.630 0.00 0.00 35.88 2.10
903 964 8.579850 AAAACATTTCTAATCATAGCCTGTGA 57.420 30.769 0.00 0.00 0.00 3.58
940 1001 1.068417 CACCTCAACGTCACCGGAA 59.932 57.895 9.46 0.00 38.78 4.30
943 1004 0.865769 CCTCAACGTCACCGGAAAAG 59.134 55.000 9.46 0.00 38.78 2.27
950 1011 2.051345 CACCGGAAAAGCGCACAC 60.051 61.111 9.46 0.00 0.00 3.82
951 1012 3.284449 ACCGGAAAAGCGCACACC 61.284 61.111 9.46 6.51 0.00 4.16
957 1018 0.317854 GAAAAGCGCACACCTGAACC 60.318 55.000 11.47 0.00 0.00 3.62
960 1021 2.902423 AAGCGCACACCTGAACCCAA 62.902 55.000 11.47 0.00 0.00 4.12
961 1022 2.485795 GCGCACACCTGAACCCAAA 61.486 57.895 0.30 0.00 0.00 3.28
962 1023 1.654220 CGCACACCTGAACCCAAAG 59.346 57.895 0.00 0.00 0.00 2.77
963 1024 1.101049 CGCACACCTGAACCCAAAGT 61.101 55.000 0.00 0.00 0.00 2.66
964 1025 1.812324 CGCACACCTGAACCCAAAGTA 60.812 52.381 0.00 0.00 0.00 2.24
965 1026 1.607148 GCACACCTGAACCCAAAGTAC 59.393 52.381 0.00 0.00 0.00 2.73
966 1027 2.227194 CACACCTGAACCCAAAGTACC 58.773 52.381 0.00 0.00 0.00 3.34
968 1029 1.144093 CACCTGAACCCAAAGTACCCA 59.856 52.381 0.00 0.00 0.00 4.51
969 1030 1.423921 ACCTGAACCCAAAGTACCCAG 59.576 52.381 0.00 0.00 0.00 4.45
975 1039 1.137594 CCCAAAGTACCCAGGTCCCA 61.138 60.000 0.00 0.00 0.00 4.37
1025 1089 3.564218 ATGGCCGCCTCCCATCTC 61.564 66.667 11.61 0.00 38.71 2.75
1338 1402 4.498520 CGCTCGTCGCACTCCCAT 62.499 66.667 0.00 0.00 39.08 4.00
1416 1480 3.240134 GAACACCCTCCTCAGCGCA 62.240 63.158 11.47 0.00 0.00 6.09
1510 1574 3.894547 AACACGATGGTCACCGGGC 62.895 63.158 6.32 0.00 31.38 6.13
1658 1722 1.335324 GCTGTTGACAAAGCGCTTGAT 60.335 47.619 25.80 15.19 38.50 2.57
1713 1777 0.732880 ACACACTCATCGCTGCGTAC 60.733 55.000 22.48 0.00 0.00 3.67
1734 1798 1.603739 GCAAGTTGGGAGGGTGGAC 60.604 63.158 4.75 0.00 0.00 4.02
2010 2074 2.402564 CCAGACCCTGATATGGTGTCT 58.597 52.381 0.00 0.00 37.79 3.41
2022 2086 8.571336 CCTGATATGGTGTCTTGGAATTTAATC 58.429 37.037 0.00 0.00 0.00 1.75
2192 2256 3.118531 AGATGCTAGAAGTTGGTGGGAT 58.881 45.455 0.00 0.00 0.00 3.85
2384 2448 3.292492 AGCCATCTTCAATCAGATGCA 57.708 42.857 5.33 0.00 46.24 3.96
2448 2512 0.250684 ATGAACACCATGGTCGTGCA 60.251 50.000 22.68 22.68 36.73 4.57
2502 2566 3.514362 GCCGGGGTTATGCCAACG 61.514 66.667 2.18 0.00 39.65 4.10
2553 2617 0.037975 GTGGAAATGCTGGCCTTGTG 60.038 55.000 3.32 0.00 0.00 3.33
2556 2620 0.244721 GAAATGCTGGCCTTGTGTCC 59.755 55.000 3.32 0.00 0.00 4.02
2664 2728 2.000447 GGTCGACATGGTAAGCTTGAC 59.000 52.381 18.91 4.98 0.00 3.18
2698 2762 6.434028 GGAGGTAATCAATAGCATGCCAATTA 59.566 38.462 15.66 8.63 34.36 1.40
2703 2767 4.790937 TCAATAGCATGCCAATTACTCCA 58.209 39.130 15.66 0.00 0.00 3.86
2742 2806 2.457598 TCTTTCCTCGGAGCATGTACT 58.542 47.619 0.00 0.00 0.00 2.73
2872 2936 0.038744 AAGGTGGGGAAGTGCATCTG 59.961 55.000 0.00 0.00 0.00 2.90
2896 2960 1.555075 CAAGGGAAGAGATGGAACGGA 59.445 52.381 0.00 0.00 0.00 4.69
2914 2978 2.350772 CGGAAAGGTGTTCACAAGCATC 60.351 50.000 5.32 0.00 0.00 3.91
2944 3008 1.199789 GCTGGATTGATTTGCACGACA 59.800 47.619 0.00 0.00 0.00 4.35
2994 3058 3.056080 CTCCCATCCCTTTATCCAGGAA 58.944 50.000 0.00 0.00 35.71 3.36
3002 3066 9.774071 CCATCCCTTTATCCAGGAAATATATTT 57.226 33.333 10.51 10.51 35.71 1.40
3030 3094 7.335422 GTCCTAGAATGTTTTGACATGTCATCT 59.665 37.037 28.32 25.57 39.64 2.90
3050 3114 1.036707 AGAGATTGGAGCTAGACGGC 58.963 55.000 0.00 0.00 0.00 5.68
3068 3132 2.147958 GGCACGGTGAGATTGTTGTAA 58.852 47.619 13.29 0.00 0.00 2.41
3114 3178 6.507023 AGGATTTTGCAGTGTAGAAACAAAG 58.493 36.000 0.00 0.00 37.36 2.77
3186 3250 2.940158 ACTGTTTGTACCCTTCCCAAC 58.060 47.619 0.00 0.00 0.00 3.77
3193 3257 2.185387 GTACCCTTCCCAACTCAGCTA 58.815 52.381 0.00 0.00 0.00 3.32
3261 3325 3.076621 TGTTGATCTGTGTGCAATCTCC 58.923 45.455 0.00 0.00 0.00 3.71
3401 3466 1.856629 AGCCAAGAAACATGGGGATG 58.143 50.000 0.00 0.00 38.44 3.51
3464 3529 7.994425 ATCTGGTACACATGTGTTTTGATAA 57.006 32.000 34.66 13.81 41.83 1.75
3465 3530 7.809546 TCTGGTACACATGTGTTTTGATAAA 57.190 32.000 34.66 13.05 41.83 1.40
3512 4667 0.696501 AGCAAGGTGAAATACGGGGT 59.303 50.000 0.00 0.00 0.00 4.95
3514 4669 1.459450 CAAGGTGAAATACGGGGTGG 58.541 55.000 0.00 0.00 0.00 4.61
3516 4671 1.205460 AGGTGAAATACGGGGTGGCT 61.205 55.000 0.00 0.00 0.00 4.75
3540 4695 9.397280 GCTGTCTACTATAAGGGATTTCTTTTT 57.603 33.333 0.00 0.00 0.00 1.94
3548 4703 9.653287 CTATAAGGGATTTCTTTTTCCAAAACC 57.347 33.333 0.00 0.00 33.43 3.27
3575 4730 3.660669 ACACTTTAGAATTTGGGGAGGGA 59.339 43.478 0.00 0.00 0.00 4.20
3581 4736 1.564348 GAATTTGGGGAGGGAGTGCTA 59.436 52.381 0.00 0.00 0.00 3.49
3582 4737 1.912862 ATTTGGGGAGGGAGTGCTAT 58.087 50.000 0.00 0.00 0.00 2.97
3583 4738 2.579624 TTTGGGGAGGGAGTGCTATA 57.420 50.000 0.00 0.00 0.00 1.31
3584 4739 1.802553 TTGGGGAGGGAGTGCTATAC 58.197 55.000 0.00 0.00 0.00 1.47
3585 4740 0.941963 TGGGGAGGGAGTGCTATACT 59.058 55.000 0.00 0.00 44.02 2.12
3586 4741 2.149556 TGGGGAGGGAGTGCTATACTA 58.850 52.381 0.00 0.00 40.53 1.82
3587 4742 2.728013 TGGGGAGGGAGTGCTATACTAT 59.272 50.000 0.00 0.00 40.53 2.12
3588 4743 3.144125 TGGGGAGGGAGTGCTATACTATT 59.856 47.826 0.00 0.00 40.53 1.73
3589 4744 3.515901 GGGGAGGGAGTGCTATACTATTG 59.484 52.174 0.00 0.00 40.53 1.90
3590 4745 3.055747 GGGAGGGAGTGCTATACTATTGC 60.056 52.174 0.00 0.00 40.53 3.56
3591 4746 3.835395 GGAGGGAGTGCTATACTATTGCT 59.165 47.826 4.45 0.00 40.53 3.91
3592 4747 5.017490 GGAGGGAGTGCTATACTATTGCTA 58.983 45.833 4.45 0.00 40.53 3.49
3593 4748 5.659079 GGAGGGAGTGCTATACTATTGCTAT 59.341 44.000 4.45 0.00 40.53 2.97
3594 4749 6.834451 GGAGGGAGTGCTATACTATTGCTATA 59.166 42.308 4.45 0.00 40.53 1.31
3595 4750 7.342284 GGAGGGAGTGCTATACTATTGCTATAA 59.658 40.741 4.45 0.00 40.53 0.98
3596 4751 8.846423 AGGGAGTGCTATACTATTGCTATAAT 57.154 34.615 4.45 0.00 40.53 1.28
3597 4752 8.919145 AGGGAGTGCTATACTATTGCTATAATC 58.081 37.037 4.45 0.00 40.53 1.75
3598 4753 8.919145 GGGAGTGCTATACTATTGCTATAATCT 58.081 37.037 4.45 0.00 40.53 2.40
3648 4803 7.933577 TGTAATCCACCATCTAGATGAATGAAC 59.066 37.037 30.40 20.67 41.20 3.18
3652 4807 6.599244 TCCACCATCTAGATGAATGAACAAAC 59.401 38.462 30.40 0.00 41.20 2.93
3667 4822 6.155475 TGAACAAACACCCTTTCCTAATTG 57.845 37.500 0.00 0.00 0.00 2.32
3694 4849 8.809066 TCTGTTGGAATTTGATGAAATCTTGAT 58.191 29.630 0.00 0.00 45.81 2.57
3742 4897 4.976224 TCCATGAACATCTCAAGCAATG 57.024 40.909 0.00 0.00 37.67 2.82
3749 4904 7.692460 TGAACATCTCAAGCAATGAACTAAT 57.308 32.000 0.00 0.00 37.67 1.73
3779 4934 6.156519 GGTATTTTTGGCCAAAACTCTACAG 58.843 40.000 37.24 0.00 39.70 2.74
3798 4955 5.148651 ACAGTGTTAGGCTTATCTTTCGT 57.851 39.130 0.00 0.00 0.00 3.85
3799 4956 5.548406 ACAGTGTTAGGCTTATCTTTCGTT 58.452 37.500 0.00 0.00 0.00 3.85
3822 4979 7.148623 CGTTTTTCTGACTGATTAAGGTAGGAC 60.149 40.741 0.00 0.00 0.00 3.85
3823 4980 5.578005 TTCTGACTGATTAAGGTAGGACG 57.422 43.478 0.00 0.00 0.00 4.79
4152 6441 2.367567 TGTAACTCCCGATCCATTAGCC 59.632 50.000 0.00 0.00 0.00 3.93
4159 6448 2.158755 CCCGATCCATTAGCCACTCTTT 60.159 50.000 0.00 0.00 0.00 2.52
4181 6470 9.590451 TCTTTGAATTAATTCCTTGCATGATTC 57.410 29.630 22.42 2.44 35.97 2.52
4182 6471 9.595823 CTTTGAATTAATTCCTTGCATGATTCT 57.404 29.630 22.42 0.00 35.97 2.40
4186 6475 8.937634 AATTAATTCCTTGCATGATTCTCAAC 57.062 30.769 0.00 0.00 0.00 3.18
4207 6496 6.601613 TCAACATTATTAGCCGTTTCCATCTT 59.398 34.615 0.00 0.00 0.00 2.40
4299 6588 1.839424 AAGAGTATTTGGCAGCCCAC 58.161 50.000 9.64 1.52 41.97 4.61
4342 6631 5.582953 AGAATGGATTCCAATGGAGAACAA 58.417 37.500 9.98 0.00 36.95 2.83
4348 6637 5.893824 GGATTCCAATGGAGAACAAAGGTAT 59.106 40.000 0.86 0.00 31.21 2.73
4391 6684 8.892723 TCATACATCATATGGTTTGACAAAGAC 58.107 33.333 0.00 0.00 33.60 3.01
4396 6689 5.473162 TCATATGGTTTGACAAAGACAGTGG 59.527 40.000 0.00 0.00 0.00 4.00
4579 6881 1.656652 CCAACCCTTGTGCTCTATCG 58.343 55.000 0.00 0.00 0.00 2.92
4621 6923 4.677250 GCAGCAGTCTACAAGGTACGTTAT 60.677 45.833 0.00 0.00 0.00 1.89
4697 7004 1.818785 GCATGCAGCTCCCTGTCTC 60.819 63.158 14.21 0.00 41.26 3.36
4766 7073 0.621571 TGAGGTGCTGGGAGGCTATT 60.622 55.000 0.00 0.00 0.00 1.73
4806 7113 0.912006 AGAAGAGAGTGGGAAGGGGC 60.912 60.000 0.00 0.00 0.00 5.80
4815 7122 2.592308 GGAAGGGGCTGCCACTAG 59.408 66.667 26.29 0.00 35.40 2.57
4844 7151 2.973899 GAGGAGAACGGAGCAGCA 59.026 61.111 0.00 0.00 0.00 4.41
4847 7154 1.522580 GGAGAACGGAGCAGCATCC 60.523 63.158 0.00 0.00 35.88 3.51
4860 7167 0.035152 AGCATCCAACGCCATGAGAA 60.035 50.000 0.00 0.00 0.00 2.87
4866 7173 1.609061 CCAACGCCATGAGAACAGACT 60.609 52.381 0.00 0.00 0.00 3.24
4871 7178 1.354040 CCATGAGAACAGACTGCGTC 58.646 55.000 1.25 0.22 0.00 5.19
4892 7199 0.102120 GATCAGAGAGGGTGCTGACG 59.898 60.000 0.00 0.00 43.26 4.35
4907 7214 2.127345 ACGTTCGAGCTCGTGTCG 60.127 61.111 33.33 31.64 38.85 4.35
5001 7308 3.807073 GCAGAGAGCTTGGGATTCCCC 62.807 61.905 19.36 3.80 46.47 4.81
5027 7334 1.357258 CGCATCGCAAGCTGAAGAGT 61.357 55.000 0.00 0.00 34.90 3.24
5034 7341 2.701073 CAAGCTGAAGAGTTTGCAGG 57.299 50.000 0.00 0.00 34.16 4.85
5105 7412 6.076653 TCCTATCTCTGATTCTGAATCTGCT 58.923 40.000 25.83 16.66 38.72 4.24
5108 7415 7.394077 CCTATCTCTGATTCTGAATCTGCTAGA 59.606 40.741 25.83 22.83 38.72 2.43
5110 7417 7.415592 TCTCTGATTCTGAATCTGCTAGAAA 57.584 36.000 25.83 9.01 38.72 2.52
5113 7420 8.659925 TCTGATTCTGAATCTGCTAGAAATTC 57.340 34.615 25.83 0.00 38.72 2.17
5125 7435 5.000591 TGCTAGAAATTCACATCCGTTTCA 58.999 37.500 0.00 0.00 34.02 2.69
5158 7468 0.740868 CTGCGATGTCGGTCATGGTT 60.741 55.000 4.44 0.00 40.23 3.67
5192 7502 3.793144 GCAGGCAAGGCGAACGAG 61.793 66.667 0.00 0.00 0.00 4.18
5330 7640 2.413837 GCCAGCTACAAAAAGAGACGA 58.586 47.619 0.00 0.00 0.00 4.20
5354 7664 0.846427 TGGCTCTTGAACCTGGGGAT 60.846 55.000 0.00 0.00 0.00 3.85
5373 7683 5.931441 GGATGCATCCAAGTACTATTGAC 57.069 43.478 35.93 7.40 46.38 3.18
5379 7689 4.794278 TCCAAGTACTATTGACGCAGAA 57.206 40.909 0.00 0.00 31.55 3.02
5391 7701 1.910880 CGCAGAACGTCTCGCATAC 59.089 57.895 0.00 0.00 36.87 2.39
5393 7703 1.560923 GCAGAACGTCTCGCATACAT 58.439 50.000 0.00 0.00 0.00 2.29
5411 7735 4.098914 ACATAGCCCAAGTGTTTCTTCA 57.901 40.909 0.00 0.00 33.63 3.02
5412 7736 4.074970 ACATAGCCCAAGTGTTTCTTCAG 58.925 43.478 0.00 0.00 33.63 3.02
5413 7737 2.736670 AGCCCAAGTGTTTCTTCAGT 57.263 45.000 0.00 0.00 33.63 3.41
5414 7738 3.018423 AGCCCAAGTGTTTCTTCAGTT 57.982 42.857 0.00 0.00 33.63 3.16
5415 7739 4.164843 AGCCCAAGTGTTTCTTCAGTTA 57.835 40.909 0.00 0.00 33.63 2.24
5416 7740 3.883489 AGCCCAAGTGTTTCTTCAGTTAC 59.117 43.478 0.00 0.00 33.63 2.50
5417 7741 3.630312 GCCCAAGTGTTTCTTCAGTTACA 59.370 43.478 0.00 0.00 33.63 2.41
5418 7742 4.097286 GCCCAAGTGTTTCTTCAGTTACAA 59.903 41.667 0.00 0.00 33.63 2.41
5468 7833 6.417258 TCAGTTATGATGGCAGAAGAATTGA 58.583 36.000 0.00 0.00 0.00 2.57
5489 7854 4.253685 GAGCTAAACACCTGCTTGTATGA 58.746 43.478 0.00 0.00 37.16 2.15
5586 8662 2.751166 ATATGCTATCGTCCCACAGC 57.249 50.000 0.00 0.00 34.56 4.40
5592 8669 1.549243 TATCGTCCCACAGCCTGCAA 61.549 55.000 0.00 0.00 0.00 4.08
5608 8685 4.731773 GCCTGCAATACACAATTCTACTGC 60.732 45.833 0.00 0.00 0.00 4.40
5667 8744 1.896694 GTGTCCCTCTGCTCTCTGG 59.103 63.158 0.00 0.00 0.00 3.86
5798 8875 2.263540 GCCTTGGCGACCTCGTAA 59.736 61.111 0.00 0.00 42.22 3.18
5801 8878 1.215647 CTTGGCGACCTCGTAAGCT 59.784 57.895 0.00 0.00 42.22 3.74
6137 9214 2.526873 AGGAACCACGTCAGGCCT 60.527 61.111 0.00 0.00 0.00 5.19
6177 9254 3.414700 GCGTCACCTTCTGCACCG 61.415 66.667 0.00 0.00 0.00 4.94
6208 9285 2.244651 GCGTCAACGTCCTGCAGTT 61.245 57.895 13.81 0.00 42.22 3.16
6214 9291 1.523758 AACGTCCTGCAGTTGAATCC 58.476 50.000 13.81 0.00 0.00 3.01
6224 9301 4.401022 TGCAGTTGAATCCATCAGTCTTT 58.599 39.130 0.00 0.00 39.77 2.52
6259 9336 6.464222 AGAGAAATAATGGTGTCAAACGAGA 58.536 36.000 0.00 0.00 0.00 4.04
6269 9346 2.028112 TGTCAAACGAGAAGAGGGATGG 60.028 50.000 0.00 0.00 0.00 3.51
6273 9353 0.904865 ACGAGAAGAGGGATGGTGCA 60.905 55.000 0.00 0.00 0.00 4.57
6352 9432 4.760047 GCCGTCGGTCATGCTGGT 62.760 66.667 13.94 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 4.771590 ACAACAGGCTAAACATGACATG 57.228 40.909 14.02 14.02 0.00 3.21
90 92 4.584325 ACAACAACAGGCTAAACATGACAT 59.416 37.500 0.00 0.00 0.00 3.06
120 122 0.944311 CGCTACTGTCGCACCACTTT 60.944 55.000 5.14 0.00 0.00 2.66
176 181 3.207778 AGTCGAATACCTCTCGAGAAGG 58.792 50.000 17.36 20.22 45.37 3.46
183 188 4.614078 CGCCTTGATAGTCGAATACCTCTC 60.614 50.000 0.00 0.00 0.00 3.20
234 241 1.338973 ACTCGTTGTTGAAGCCGTCTA 59.661 47.619 0.00 0.00 0.00 2.59
259 266 3.804036 TCTTGTGTTTCCATCGAAGTGT 58.196 40.909 0.00 0.00 0.00 3.55
264 271 4.808414 AGAGATCTTGTGTTTCCATCGA 57.192 40.909 0.00 0.00 0.00 3.59
321 328 2.173519 CAATCCACCACCTTCAGCAAT 58.826 47.619 0.00 0.00 0.00 3.56
344 351 0.031616 TTTCACCCCCAAAGCCAAGT 60.032 50.000 0.00 0.00 0.00 3.16
362 369 3.310774 CGATGATGGCGAACTCTGAATTT 59.689 43.478 0.00 0.00 0.00 1.82
413 458 1.362224 ACACAACTCCCAGGCTACAT 58.638 50.000 0.00 0.00 0.00 2.29
414 459 2.018355 TACACAACTCCCAGGCTACA 57.982 50.000 0.00 0.00 0.00 2.74
422 467 7.364970 ACATAAACGAAAAATACACAACTCCC 58.635 34.615 0.00 0.00 0.00 4.30
486 540 0.318784 GAGGCCGTATACCTTGCGAG 60.319 60.000 0.00 0.00 37.77 5.03
529 585 1.589630 CCGAACACCATCGACCTGA 59.410 57.895 0.00 0.00 45.48 3.86
590 648 2.729479 CGGCCTCTGCATCTGGACT 61.729 63.158 0.00 0.00 40.13 3.85
595 653 1.689233 TAACCCGGCCTCTGCATCT 60.689 57.895 0.00 0.00 40.13 2.90
642 703 7.931948 CGGATGGAGTATCTTTTTGTTAGGTAT 59.068 37.037 0.00 0.00 36.03 2.73
643 704 7.093201 ACGGATGGAGTATCTTTTTGTTAGGTA 60.093 37.037 0.00 0.00 36.03 3.08
644 705 6.113411 CGGATGGAGTATCTTTTTGTTAGGT 58.887 40.000 0.00 0.00 36.03 3.08
645 706 6.113411 ACGGATGGAGTATCTTTTTGTTAGG 58.887 40.000 0.00 0.00 36.03 2.69
646 707 7.201617 GGAACGGATGGAGTATCTTTTTGTTAG 60.202 40.741 0.00 0.00 36.03 2.34
647 708 6.596497 GGAACGGATGGAGTATCTTTTTGTTA 59.404 38.462 0.00 0.00 36.03 2.41
648 709 5.414765 GGAACGGATGGAGTATCTTTTTGTT 59.585 40.000 0.00 0.00 36.03 2.83
649 710 4.941873 GGAACGGATGGAGTATCTTTTTGT 59.058 41.667 0.00 0.00 36.03 2.83
650 711 5.186198 AGGAACGGATGGAGTATCTTTTTG 58.814 41.667 0.00 0.00 36.03 2.44
651 712 5.437191 AGGAACGGATGGAGTATCTTTTT 57.563 39.130 0.00 0.00 36.03 1.94
652 713 6.555463 TTAGGAACGGATGGAGTATCTTTT 57.445 37.500 0.00 0.00 36.03 2.27
653 714 6.555463 TTTAGGAACGGATGGAGTATCTTT 57.445 37.500 0.00 0.00 36.03 2.52
654 715 6.099845 ACATTTAGGAACGGATGGAGTATCTT 59.900 38.462 0.00 0.00 36.03 2.40
655 716 5.602978 ACATTTAGGAACGGATGGAGTATCT 59.397 40.000 0.00 0.00 36.03 1.98
656 717 5.855045 ACATTTAGGAACGGATGGAGTATC 58.145 41.667 0.00 0.00 34.93 2.24
657 718 5.888982 ACATTTAGGAACGGATGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
658 719 6.381994 ACTTACATTTAGGAACGGATGGAGTA 59.618 38.462 0.00 0.00 0.00 2.59
659 720 5.189145 ACTTACATTTAGGAACGGATGGAGT 59.811 40.000 0.00 0.00 0.00 3.85
660 721 5.671493 ACTTACATTTAGGAACGGATGGAG 58.329 41.667 0.00 0.00 0.00 3.86
661 722 5.424252 AGACTTACATTTAGGAACGGATGGA 59.576 40.000 0.00 0.00 0.00 3.41
662 723 5.671493 AGACTTACATTTAGGAACGGATGG 58.329 41.667 0.00 0.00 0.00 3.51
663 724 7.611213 AAAGACTTACATTTAGGAACGGATG 57.389 36.000 0.00 0.00 0.00 3.51
664 725 8.631480 AAAAAGACTTACATTTAGGAACGGAT 57.369 30.769 0.00 0.00 0.00 4.18
665 726 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
666 727 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
735 796 9.204570 GCAAAGTGAGTAAATCTACACTCTAAA 57.795 33.333 0.00 0.00 41.73 1.85
736 797 8.585881 AGCAAAGTGAGTAAATCTACACTCTAA 58.414 33.333 0.00 0.00 41.73 2.10
737 798 8.123639 AGCAAAGTGAGTAAATCTACACTCTA 57.876 34.615 0.00 0.00 41.73 2.43
738 799 6.998802 AGCAAAGTGAGTAAATCTACACTCT 58.001 36.000 0.00 0.00 41.73 3.24
739 800 6.311690 GGAGCAAAGTGAGTAAATCTACACTC 59.688 42.308 0.00 0.00 41.73 3.51
740 801 6.166982 GGAGCAAAGTGAGTAAATCTACACT 58.833 40.000 0.00 0.00 43.92 3.55
741 802 5.932303 TGGAGCAAAGTGAGTAAATCTACAC 59.068 40.000 0.00 0.00 0.00 2.90
742 803 6.109156 TGGAGCAAAGTGAGTAAATCTACA 57.891 37.500 0.00 0.00 0.00 2.74
743 804 7.043325 CGTATGGAGCAAAGTGAGTAAATCTAC 60.043 40.741 0.00 0.00 0.00 2.59
744 805 6.978659 CGTATGGAGCAAAGTGAGTAAATCTA 59.021 38.462 0.00 0.00 0.00 1.98
745 806 5.812642 CGTATGGAGCAAAGTGAGTAAATCT 59.187 40.000 0.00 0.00 0.00 2.40
746 807 5.581085 ACGTATGGAGCAAAGTGAGTAAATC 59.419 40.000 0.00 0.00 0.00 2.17
747 808 5.488341 ACGTATGGAGCAAAGTGAGTAAAT 58.512 37.500 0.00 0.00 0.00 1.40
748 809 4.890088 ACGTATGGAGCAAAGTGAGTAAA 58.110 39.130 0.00 0.00 0.00 2.01
749 810 4.530710 ACGTATGGAGCAAAGTGAGTAA 57.469 40.909 0.00 0.00 0.00 2.24
750 811 4.703575 ACTACGTATGGAGCAAAGTGAGTA 59.296 41.667 0.00 0.00 0.00 2.59
751 812 3.510360 ACTACGTATGGAGCAAAGTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
752 813 4.106197 GACTACGTATGGAGCAAAGTGAG 58.894 47.826 0.00 0.00 0.00 3.51
753 814 3.508402 TGACTACGTATGGAGCAAAGTGA 59.492 43.478 0.00 0.00 0.00 3.41
754 815 3.845178 TGACTACGTATGGAGCAAAGTG 58.155 45.455 0.00 0.00 0.00 3.16
755 816 4.737855 ATGACTACGTATGGAGCAAAGT 57.262 40.909 0.00 0.00 0.00 2.66
756 817 5.351465 ACAAATGACTACGTATGGAGCAAAG 59.649 40.000 0.00 0.00 0.00 2.77
757 818 5.242434 ACAAATGACTACGTATGGAGCAAA 58.758 37.500 0.00 0.00 0.00 3.68
758 819 4.827692 ACAAATGACTACGTATGGAGCAA 58.172 39.130 0.00 0.00 0.00 3.91
759 820 4.465632 ACAAATGACTACGTATGGAGCA 57.534 40.909 0.00 0.00 0.00 4.26
760 821 4.034048 CCAACAAATGACTACGTATGGAGC 59.966 45.833 0.00 0.00 0.00 4.70
761 822 5.416083 TCCAACAAATGACTACGTATGGAG 58.584 41.667 4.97 0.00 31.26 3.86
762 823 5.408880 TCCAACAAATGACTACGTATGGA 57.591 39.130 4.97 4.97 32.33 3.41
763 824 6.538742 AGATTCCAACAAATGACTACGTATGG 59.461 38.462 0.00 0.00 0.00 2.74
764 825 7.492669 AGAGATTCCAACAAATGACTACGTATG 59.507 37.037 0.00 0.00 0.00 2.39
765 826 7.556844 AGAGATTCCAACAAATGACTACGTAT 58.443 34.615 0.00 0.00 0.00 3.06
766 827 6.931838 AGAGATTCCAACAAATGACTACGTA 58.068 36.000 0.00 0.00 0.00 3.57
767 828 5.794894 AGAGATTCCAACAAATGACTACGT 58.205 37.500 0.00 0.00 0.00 3.57
768 829 7.258441 TCTAGAGATTCCAACAAATGACTACG 58.742 38.462 0.00 0.00 0.00 3.51
769 830 9.436957 TTTCTAGAGATTCCAACAAATGACTAC 57.563 33.333 0.00 0.00 0.00 2.73
788 849 9.991906 CCGTTCCCAAATATAAGTATTTCTAGA 57.008 33.333 0.00 0.00 38.21 2.43
789 850 9.991906 TCCGTTCCCAAATATAAGTATTTCTAG 57.008 33.333 0.00 0.00 38.21 2.43
790 851 9.991906 CTCCGTTCCCAAATATAAGTATTTCTA 57.008 33.333 0.00 0.00 38.21 2.10
791 852 7.937394 CCTCCGTTCCCAAATATAAGTATTTCT 59.063 37.037 0.00 0.00 38.21 2.52
792 853 7.174426 CCCTCCGTTCCCAAATATAAGTATTTC 59.826 40.741 0.00 0.00 38.21 2.17
793 854 7.002276 CCCTCCGTTCCCAAATATAAGTATTT 58.998 38.462 0.00 0.00 40.31 1.40
794 855 6.330778 TCCCTCCGTTCCCAAATATAAGTATT 59.669 38.462 0.00 0.00 31.89 1.89
795 856 5.847817 TCCCTCCGTTCCCAAATATAAGTAT 59.152 40.000 0.00 0.00 0.00 2.12
796 857 5.218179 TCCCTCCGTTCCCAAATATAAGTA 58.782 41.667 0.00 0.00 0.00 2.24
797 858 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
798 859 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
799 860 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
800 861 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
801 862 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
802 863 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
803 864 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
804 865 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
805 866 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
806 867 0.635009 ATCTACTCCCTCCGTTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
807 868 1.041437 CATCTACTCCCTCCGTTCCC 58.959 60.000 0.00 0.00 0.00 3.97
808 869 1.957877 CTCATCTACTCCCTCCGTTCC 59.042 57.143 0.00 0.00 0.00 3.62
809 870 2.657143 ACTCATCTACTCCCTCCGTTC 58.343 52.381 0.00 0.00 0.00 3.95
810 871 2.830651 ACTCATCTACTCCCTCCGTT 57.169 50.000 0.00 0.00 0.00 4.44
811 872 3.947612 TTACTCATCTACTCCCTCCGT 57.052 47.619 0.00 0.00 0.00 4.69
812 873 4.036971 CACTTTACTCATCTACTCCCTCCG 59.963 50.000 0.00 0.00 0.00 4.63
813 874 4.342665 CCACTTTACTCATCTACTCCCTCC 59.657 50.000 0.00 0.00 0.00 4.30
814 875 4.342665 CCCACTTTACTCATCTACTCCCTC 59.657 50.000 0.00 0.00 0.00 4.30
815 876 4.264895 ACCCACTTTACTCATCTACTCCCT 60.265 45.833 0.00 0.00 0.00 4.20
816 877 4.031611 ACCCACTTTACTCATCTACTCCC 58.968 47.826 0.00 0.00 0.00 4.30
817 878 4.710375 TGACCCACTTTACTCATCTACTCC 59.290 45.833 0.00 0.00 0.00 3.85
818 879 5.916661 TGACCCACTTTACTCATCTACTC 57.083 43.478 0.00 0.00 0.00 2.59
819 880 5.129485 CCATGACCCACTTTACTCATCTACT 59.871 44.000 0.00 0.00 0.00 2.57
820 881 5.128827 TCCATGACCCACTTTACTCATCTAC 59.871 44.000 0.00 0.00 0.00 2.59
821 882 5.277250 TCCATGACCCACTTTACTCATCTA 58.723 41.667 0.00 0.00 0.00 1.98
822 883 4.104086 TCCATGACCCACTTTACTCATCT 58.896 43.478 0.00 0.00 0.00 2.90
823 884 4.487714 TCCATGACCCACTTTACTCATC 57.512 45.455 0.00 0.00 0.00 2.92
824 885 4.042809 TGTTCCATGACCCACTTTACTCAT 59.957 41.667 0.00 0.00 0.00 2.90
825 886 3.392947 TGTTCCATGACCCACTTTACTCA 59.607 43.478 0.00 0.00 0.00 3.41
826 887 3.751698 GTGTTCCATGACCCACTTTACTC 59.248 47.826 0.00 0.00 0.00 2.59
827 888 3.137544 TGTGTTCCATGACCCACTTTACT 59.862 43.478 0.00 0.00 0.00 2.24
828 889 3.482436 TGTGTTCCATGACCCACTTTAC 58.518 45.455 0.00 0.00 0.00 2.01
829 890 3.866703 TGTGTTCCATGACCCACTTTA 57.133 42.857 0.00 0.00 0.00 1.85
830 891 2.746279 TGTGTTCCATGACCCACTTT 57.254 45.000 0.00 0.00 0.00 2.66
831 892 2.746279 TTGTGTTCCATGACCCACTT 57.254 45.000 0.00 0.00 0.00 3.16
832 893 2.746279 TTTGTGTTCCATGACCCACT 57.254 45.000 0.00 0.00 0.00 4.00
833 894 2.693074 ACTTTTGTGTTCCATGACCCAC 59.307 45.455 0.00 0.00 0.00 4.61
834 895 2.955660 GACTTTTGTGTTCCATGACCCA 59.044 45.455 0.00 0.00 0.00 4.51
835 896 2.955660 TGACTTTTGTGTTCCATGACCC 59.044 45.455 0.00 0.00 0.00 4.46
836 897 4.853924 ATGACTTTTGTGTTCCATGACC 57.146 40.909 0.00 0.00 0.00 4.02
837 898 9.341899 GTTAATATGACTTTTGTGTTCCATGAC 57.658 33.333 0.00 0.00 0.00 3.06
838 899 8.233868 CGTTAATATGACTTTTGTGTTCCATGA 58.766 33.333 0.00 0.00 0.00 3.07
839 900 7.484641 CCGTTAATATGACTTTTGTGTTCCATG 59.515 37.037 0.00 0.00 0.00 3.66
840 901 7.362574 CCCGTTAATATGACTTTTGTGTTCCAT 60.363 37.037 0.00 0.00 0.00 3.41
841 902 6.072397 CCCGTTAATATGACTTTTGTGTTCCA 60.072 38.462 0.00 0.00 0.00 3.53
842 903 6.072342 ACCCGTTAATATGACTTTTGTGTTCC 60.072 38.462 0.00 0.00 0.00 3.62
843 904 6.905578 ACCCGTTAATATGACTTTTGTGTTC 58.094 36.000 0.00 0.00 0.00 3.18
844 905 6.887626 ACCCGTTAATATGACTTTTGTGTT 57.112 33.333 0.00 0.00 0.00 3.32
845 906 6.887626 AACCCGTTAATATGACTTTTGTGT 57.112 33.333 0.00 0.00 0.00 3.72
846 907 7.114247 CACAAACCCGTTAATATGACTTTTGTG 59.886 37.037 16.33 16.33 42.60 3.33
847 908 7.142680 CACAAACCCGTTAATATGACTTTTGT 58.857 34.615 0.00 0.00 35.57 2.83
848 909 7.142680 ACACAAACCCGTTAATATGACTTTTG 58.857 34.615 0.00 0.00 0.00 2.44
849 910 7.279750 ACACAAACCCGTTAATATGACTTTT 57.720 32.000 0.00 0.00 0.00 2.27
850 911 6.887626 ACACAAACCCGTTAATATGACTTT 57.112 33.333 0.00 0.00 0.00 2.66
851 912 7.982761 TTACACAAACCCGTTAATATGACTT 57.017 32.000 0.00 0.00 0.00 3.01
852 913 9.669887 TTATTACACAAACCCGTTAATATGACT 57.330 29.630 0.00 0.00 0.00 3.41
858 919 9.984190 ATGTTTTTATTACACAAACCCGTTAAT 57.016 25.926 0.00 0.00 30.64 1.40
859 920 9.813446 AATGTTTTTATTACACAAACCCGTTAA 57.187 25.926 0.00 0.00 30.64 2.01
860 921 9.813446 AAATGTTTTTATTACACAAACCCGTTA 57.187 25.926 0.00 0.00 30.64 3.18
861 922 8.719560 AAATGTTTTTATTACACAAACCCGTT 57.280 26.923 0.00 0.00 30.64 4.44
862 923 8.198778 AGAAATGTTTTTATTACACAAACCCGT 58.801 29.630 0.00 0.00 30.64 5.28
863 924 8.582433 AGAAATGTTTTTATTACACAAACCCG 57.418 30.769 0.00 0.00 30.64 5.28
877 938 9.023962 TCACAGGCTATGATTAGAAATGTTTTT 57.976 29.630 0.00 0.00 0.00 1.94
878 939 8.579850 TCACAGGCTATGATTAGAAATGTTTT 57.420 30.769 0.00 0.00 0.00 2.43
879 940 7.831193 ACTCACAGGCTATGATTAGAAATGTTT 59.169 33.333 0.00 0.00 0.00 2.83
880 941 7.341805 ACTCACAGGCTATGATTAGAAATGTT 58.658 34.615 0.00 0.00 0.00 2.71
881 942 6.893583 ACTCACAGGCTATGATTAGAAATGT 58.106 36.000 0.00 0.00 0.00 2.71
882 943 7.798596 AACTCACAGGCTATGATTAGAAATG 57.201 36.000 0.00 0.00 0.00 2.32
883 944 8.680903 CAAAACTCACAGGCTATGATTAGAAAT 58.319 33.333 0.00 0.00 0.00 2.17
884 945 7.121168 CCAAAACTCACAGGCTATGATTAGAAA 59.879 37.037 0.00 0.00 0.00 2.52
885 946 6.599244 CCAAAACTCACAGGCTATGATTAGAA 59.401 38.462 0.00 0.00 0.00 2.10
886 947 6.115446 CCAAAACTCACAGGCTATGATTAGA 58.885 40.000 0.00 0.00 0.00 2.10
887 948 5.882557 ACCAAAACTCACAGGCTATGATTAG 59.117 40.000 0.00 0.00 0.00 1.73
888 949 5.815581 ACCAAAACTCACAGGCTATGATTA 58.184 37.500 0.00 0.00 0.00 1.75
889 950 4.666512 ACCAAAACTCACAGGCTATGATT 58.333 39.130 0.00 0.00 0.00 2.57
890 951 4.018960 AGACCAAAACTCACAGGCTATGAT 60.019 41.667 0.00 0.00 0.00 2.45
891 952 3.327757 AGACCAAAACTCACAGGCTATGA 59.672 43.478 0.00 0.00 0.00 2.15
892 953 3.438087 CAGACCAAAACTCACAGGCTATG 59.562 47.826 0.00 0.00 0.00 2.23
893 954 3.327757 TCAGACCAAAACTCACAGGCTAT 59.672 43.478 0.00 0.00 0.00 2.97
894 955 2.703536 TCAGACCAAAACTCACAGGCTA 59.296 45.455 0.00 0.00 0.00 3.93
895 956 1.490490 TCAGACCAAAACTCACAGGCT 59.510 47.619 0.00 0.00 0.00 4.58
896 957 1.604278 GTCAGACCAAAACTCACAGGC 59.396 52.381 0.00 0.00 0.00 4.85
897 958 2.222027 GGTCAGACCAAAACTCACAGG 58.778 52.381 15.43 0.00 38.42 4.00
940 1001 2.193536 GGGTTCAGGTGTGCGCTTT 61.194 57.895 9.73 0.00 0.00 3.51
943 1004 2.406452 CTTTGGGTTCAGGTGTGCGC 62.406 60.000 0.00 0.00 0.00 6.09
950 1011 1.271926 CCTGGGTACTTTGGGTTCAGG 60.272 57.143 0.00 0.00 35.16 3.86
951 1012 1.423921 ACCTGGGTACTTTGGGTTCAG 59.576 52.381 0.00 0.00 0.00 3.02
957 1018 0.328258 CTGGGACCTGGGTACTTTGG 59.672 60.000 1.70 0.00 0.00 3.28
960 1021 3.084191 GTCTGGGACCTGGGTACTT 57.916 57.895 1.70 0.00 0.00 2.24
961 1022 4.890207 GTCTGGGACCTGGGTACT 57.110 61.111 1.70 0.00 0.00 2.73
975 1039 1.550130 TTCAAAGGATCCGGCGGTCT 61.550 55.000 27.32 18.36 0.00 3.85
1446 1510 1.176619 TCTCGTCGAACAGCTTCCCA 61.177 55.000 0.00 0.00 0.00 4.37
1510 1574 0.250640 ACCTGACCAGCAGCAAAGAG 60.251 55.000 0.00 0.00 43.50 2.85
1658 1722 2.092968 GCCTTGTCCATATCTGTCACCA 60.093 50.000 0.00 0.00 0.00 4.17
1668 1732 2.025981 AGCATCAACAGCCTTGTCCATA 60.026 45.455 0.00 0.00 36.23 2.74
1713 1777 3.966543 ACCCTCCCAACTTGCCCG 61.967 66.667 0.00 0.00 0.00 6.13
1734 1798 8.260270 TCATATCAAATAATCTTCTGGCATCG 57.740 34.615 0.00 0.00 0.00 3.84
2010 2074 8.836413 GTGAATCCTCGTATGATTAAATTCCAA 58.164 33.333 0.00 0.00 32.74 3.53
2022 2086 5.241728 TCCTATCTGTGTGAATCCTCGTATG 59.758 44.000 0.00 0.00 0.00 2.39
2384 2448 6.861055 CCAAGACACTAAACATTTTTGCGTAT 59.139 34.615 0.00 0.00 0.00 3.06
2448 2512 0.466922 ACAGCTGCAAGGCTTCTGTT 60.467 50.000 15.27 1.67 41.00 3.16
2502 2566 8.801715 TCAAAAGAGAAATGAAAGTTATGTGC 57.198 30.769 0.00 0.00 0.00 4.57
2553 2617 0.618981 AAACCCTCCATCCTTCGGAC 59.381 55.000 0.00 0.00 32.98 4.79
2556 2620 1.004277 TGGAAAACCCTCCATCCTTCG 59.996 52.381 0.00 0.00 40.71 3.79
2631 2695 3.692791 TGTCGACCTATGAGATTGACG 57.307 47.619 14.12 0.00 0.00 4.35
2664 2728 5.391310 GCTATTGATTACCTCCAATGCATCG 60.391 44.000 0.00 0.00 35.02 3.84
2703 2767 0.325671 ATCCCCACACAGATCGGTCT 60.326 55.000 0.00 0.00 34.14 3.85
2742 2806 2.807967 CAGTGGTTCATTCTTCTTCGCA 59.192 45.455 0.00 0.00 0.00 5.10
2785 2849 6.669125 ACTCTCAGGATCAATCTTGGATAG 57.331 41.667 0.00 1.67 34.94 2.08
2872 2936 0.620556 TCCATCTCTTCCCTTGCCAC 59.379 55.000 0.00 0.00 0.00 5.01
2896 2960 2.624838 CAGGATGCTTGTGAACACCTTT 59.375 45.455 2.46 0.00 0.00 3.11
2914 2978 0.911769 TCAATCCAGCTGTACCCAGG 59.088 55.000 13.81 0.00 39.22 4.45
2944 3008 0.593128 GCGTTGAAGACATGCACCTT 59.407 50.000 0.00 0.00 0.00 3.50
3002 3066 7.676004 TGACATGTCAAAACATTCTAGGACTA 58.324 34.615 26.02 0.00 43.74 2.59
3030 3094 2.231529 GCCGTCTAGCTCCAATCTCTA 58.768 52.381 0.00 0.00 0.00 2.43
3079 3143 6.092533 ACACTGCAAAATCCTTTTCTTTGTTG 59.907 34.615 0.00 0.00 33.51 3.33
3091 3155 6.417930 GTCTTTGTTTCTACACTGCAAAATCC 59.582 38.462 0.00 0.00 32.98 3.01
3114 3178 5.776744 AGAATCAAAGGCAGAAAACATGTC 58.223 37.500 0.00 0.00 0.00 3.06
3127 3191 7.496529 TGTACAAGTCAAGAAGAATCAAAGG 57.503 36.000 0.00 0.00 0.00 3.11
3180 3244 6.303839 AGTTTGTAAATTAGCTGAGTTGGGA 58.696 36.000 0.95 0.00 0.00 4.37
3193 3257 9.899226 GAGCTCAATTAACAGAGTTTGTAAATT 57.101 29.630 9.40 0.00 39.73 1.82
3230 3294 5.626543 GCACACAGATCAACAAATGTAACAG 59.373 40.000 0.00 0.00 0.00 3.16
3238 3302 4.022935 GGAGATTGCACACAGATCAACAAA 60.023 41.667 0.00 0.00 0.00 2.83
3281 3345 4.617530 GCTGTTCATGCATCAACTCACATT 60.618 41.667 14.84 0.00 0.00 2.71
3282 3346 3.119602 GCTGTTCATGCATCAACTCACAT 60.120 43.478 14.84 0.00 0.00 3.21
3372 3437 2.159254 TGTTTCTTGGCTTGTGCAACTC 60.159 45.455 0.00 0.00 41.91 3.01
3401 3466 0.250467 TCACTTGAGTTGCCTGGCTC 60.250 55.000 21.03 12.81 0.00 4.70
3512 4667 6.143915 AGAAATCCCTTATAGTAGACAGCCA 58.856 40.000 0.00 0.00 0.00 4.75
3514 4669 8.966069 AAAAGAAATCCCTTATAGTAGACAGC 57.034 34.615 0.00 0.00 0.00 4.40
3516 4671 9.901172 GGAAAAAGAAATCCCTTATAGTAGACA 57.099 33.333 0.00 0.00 0.00 3.41
3540 4695 8.934023 AATTCTAAAGTGTATCTGGTTTTGGA 57.066 30.769 0.00 0.00 0.00 3.53
3548 4703 6.543831 CCTCCCCAAATTCTAAAGTGTATCTG 59.456 42.308 0.00 0.00 0.00 2.90
3603 4758 9.997482 GGATTACAGCAATAGTATTTTCGAAAA 57.003 29.630 24.43 24.43 0.00 2.29
3604 4759 9.168451 TGGATTACAGCAATAGTATTTTCGAAA 57.832 29.630 6.47 6.47 0.00 3.46
3605 4760 8.609176 GTGGATTACAGCAATAGTATTTTCGAA 58.391 33.333 0.00 0.00 0.00 3.71
3606 4761 7.225931 GGTGGATTACAGCAATAGTATTTTCGA 59.774 37.037 0.00 0.00 46.64 3.71
3607 4762 7.352739 GGTGGATTACAGCAATAGTATTTTCG 58.647 38.462 0.00 0.00 46.64 3.46
3623 4778 7.933577 TGTTCATTCATCTAGATGGTGGATTAC 59.066 37.037 28.30 20.45 39.24 1.89
3648 4803 5.301805 ACAGACAATTAGGAAAGGGTGTTTG 59.698 40.000 0.00 0.00 0.00 2.93
3652 4807 4.218417 CCAACAGACAATTAGGAAAGGGTG 59.782 45.833 0.00 0.00 0.00 4.61
3667 4822 8.084073 TCAAGATTTCATCAAATTCCAACAGAC 58.916 33.333 0.00 0.00 31.94 3.51
3742 4897 8.261522 TGGCCAAAAATACCCATTTATTAGTTC 58.738 33.333 0.61 0.00 33.09 3.01
3749 4904 6.842676 AGTTTTGGCCAAAAATACCCATTTA 58.157 32.000 38.37 15.08 41.37 1.40
3779 4934 7.534239 CAGAAAAACGAAAGATAAGCCTAACAC 59.466 37.037 0.00 0.00 0.00 3.32
3798 4955 6.872020 CGTCCTACCTTAATCAGTCAGAAAAA 59.128 38.462 0.00 0.00 0.00 1.94
3799 4956 6.209986 TCGTCCTACCTTAATCAGTCAGAAAA 59.790 38.462 0.00 0.00 0.00 2.29
3822 4979 4.200874 AGGAATACTCTGTACTCCACTCG 58.799 47.826 7.76 0.00 0.00 4.18
3823 4980 6.593807 TCTAGGAATACTCTGTACTCCACTC 58.406 44.000 7.76 0.00 0.00 3.51
3944 6233 4.642429 ACTGTAAGACTTTCATCACCCAC 58.358 43.478 0.00 0.00 37.43 4.61
4152 6441 8.030692 TCATGCAAGGAATTAATTCAAAGAGTG 58.969 33.333 25.55 17.26 38.53 3.51
4159 6448 8.296211 TGAGAATCATGCAAGGAATTAATTCA 57.704 30.769 25.55 9.30 42.56 2.57
4181 6470 5.811399 TGGAAACGGCTAATAATGTTGAG 57.189 39.130 0.00 0.00 0.00 3.02
4182 6471 6.119536 AGATGGAAACGGCTAATAATGTTGA 58.880 36.000 0.00 0.00 0.00 3.18
4186 6475 5.765182 AGGAAGATGGAAACGGCTAATAATG 59.235 40.000 0.00 0.00 0.00 1.90
4207 6496 6.986817 GCTCTTAAATGCTTGTATCACTAGGA 59.013 38.462 0.00 0.00 0.00 2.94
4391 6684 0.246360 TGATGTACGCCTGTCCACTG 59.754 55.000 0.00 0.00 0.00 3.66
4396 6689 2.960819 ACTTTCTGATGTACGCCTGTC 58.039 47.619 0.00 0.00 0.00 3.51
4566 6868 1.227674 GGGGCCGATAGAGCACAAG 60.228 63.158 0.00 0.00 37.41 3.16
4608 6910 2.028476 TGCTCTGCATAACGTACCTTGT 60.028 45.455 0.00 0.00 31.71 3.16
4621 6923 0.761187 ACTCCAGAAGTTGCTCTGCA 59.239 50.000 0.00 0.00 41.36 4.41
4697 7004 2.954753 GCCTGTGTCGCAAGGAACG 61.955 63.158 6.18 0.00 38.47 3.95
4766 7073 5.550290 TCTGTGTTGTTATCAGATTGCTCA 58.450 37.500 0.00 0.00 34.00 4.26
4779 7086 2.771943 TCCCACTCTCTTCTGTGTTGTT 59.228 45.455 0.00 0.00 32.76 2.83
4783 7090 1.974236 CCTTCCCACTCTCTTCTGTGT 59.026 52.381 0.00 0.00 32.76 3.72
4815 7122 2.000447 GTTCTCCTCGCCATAACACAC 59.000 52.381 0.00 0.00 0.00 3.82
4844 7151 1.278985 TCTGTTCTCATGGCGTTGGAT 59.721 47.619 0.00 0.00 0.00 3.41
4847 7154 1.462283 CAGTCTGTTCTCATGGCGTTG 59.538 52.381 0.00 0.00 0.00 4.10
4866 7173 0.323816 ACCCTCTCTGATCTGACGCA 60.324 55.000 0.00 0.00 0.00 5.24
4871 7178 1.136695 GTCAGCACCCTCTCTGATCTG 59.863 57.143 0.00 0.00 40.89 2.90
4892 7199 2.428569 TGCGACACGAGCTCGAAC 60.429 61.111 40.58 26.71 43.02 3.95
4907 7214 2.579207 TCGGCATGTAGAAGTACTGC 57.421 50.000 0.00 0.00 34.83 4.40
5027 7334 1.243342 CGTTGATGAGGGCCTGCAAA 61.243 55.000 12.95 0.00 0.00 3.68
5034 7341 2.158959 CGACGTCGTTGATGAGGGC 61.159 63.158 29.08 0.00 34.11 5.19
5105 7412 5.309638 TGGTGAAACGGATGTGAATTTCTA 58.690 37.500 0.00 0.00 38.12 2.10
5108 7415 4.280677 ACATGGTGAAACGGATGTGAATTT 59.719 37.500 0.00 0.00 38.63 1.82
5110 7417 3.420893 ACATGGTGAAACGGATGTGAAT 58.579 40.909 0.00 0.00 38.63 2.57
5113 7420 4.757799 TTTACATGGTGAAACGGATGTG 57.242 40.909 0.00 0.00 39.85 3.21
5125 7435 2.401583 TCGCAGAGCATTTACATGGT 57.598 45.000 0.00 0.00 44.10 3.55
5254 7564 2.178521 CGAGCTCAACGTACGGCT 59.821 61.111 21.06 17.84 37.77 5.52
5330 7640 1.072965 CCAGGTTCAAGAGCCAAGAGT 59.927 52.381 5.74 0.00 33.73 3.24
5354 7664 3.194861 GCGTCAATAGTACTTGGATGCA 58.805 45.455 21.05 0.00 0.00 3.96
5379 7689 0.314302 GGGCTATGTATGCGAGACGT 59.686 55.000 0.00 0.00 0.00 4.34
5391 7701 4.074970 ACTGAAGAAACACTTGGGCTATG 58.925 43.478 0.00 0.00 39.13 2.23
5393 7703 3.857157 ACTGAAGAAACACTTGGGCTA 57.143 42.857 0.00 0.00 39.13 3.93
5415 7739 8.629158 TGCACAAGACTCTAATAAAACATTTGT 58.371 29.630 0.00 0.00 0.00 2.83
5416 7740 9.630098 ATGCACAAGACTCTAATAAAACATTTG 57.370 29.630 0.00 0.00 0.00 2.32
5436 7760 3.762823 TGCCATCATAACTGAAATGCACA 59.237 39.130 0.00 0.00 34.37 4.57
5468 7833 4.003648 GTCATACAAGCAGGTGTTTAGCT 58.996 43.478 0.00 0.00 41.03 3.32
5510 7875 4.700700 CCTCACATCACATGCTTGATAGA 58.299 43.478 6.60 2.07 34.29 1.98
5517 7882 0.679002 GGTGCCTCACATCACATGCT 60.679 55.000 0.00 0.00 35.86 3.79
5586 8662 4.637534 AGCAGTAGAATTGTGTATTGCAGG 59.362 41.667 8.41 0.00 38.32 4.85
5592 8669 6.467677 ACTTCACAGCAGTAGAATTGTGTAT 58.532 36.000 3.73 0.00 41.19 2.29
5608 8685 3.242870 GGTCACTGCTTGAAACTTCACAG 60.243 47.826 7.97 7.97 37.34 3.66
5667 8744 1.650536 CGGAGTACGTCGACATCGC 60.651 63.158 17.16 6.59 39.60 4.58
6196 9273 0.396435 TGGATTCAACTGCAGGACGT 59.604 50.000 19.93 0.00 0.00 4.34
6205 9282 5.645497 GCACTAAAGACTGATGGATTCAACT 59.355 40.000 0.00 0.00 32.78 3.16
6208 9285 5.164620 TGCACTAAAGACTGATGGATTCA 57.835 39.130 0.00 0.00 0.00 2.57
6214 9291 5.105063 TCTCGATTGCACTAAAGACTGATG 58.895 41.667 0.00 0.00 0.00 3.07
6224 9301 6.479990 CACCATTATTTCTCTCGATTGCACTA 59.520 38.462 0.00 0.00 0.00 2.74
6259 9336 0.700564 ACACATGCACCATCCCTCTT 59.299 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.