Multiple sequence alignment - TraesCS7B01G092800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G092800 chr7B 100.000 2855 0 0 1 2855 106127383 106130237 0.000000e+00 5273.0
1 TraesCS7B01G092800 chr7B 95.269 613 22 2 2249 2854 173100564 173101176 0.000000e+00 965.0
2 TraesCS7B01G092800 chr7B 97.143 350 8 1 1 348 662530238 662529889 8.810000e-165 590.0
3 TraesCS7B01G092800 chr7B 97.126 348 8 1 1 346 356738772 356739119 1.140000e-163 586.0
4 TraesCS7B01G092800 chr7B 79.147 633 109 18 1229 1851 104005418 104004799 1.580000e-112 416.0
5 TraesCS7B01G092800 chr3B 95.567 609 23 3 2249 2854 388919909 388920516 0.000000e+00 972.0
6 TraesCS7B01G092800 chr3B 94.918 610 27 2 2249 2854 699645067 699645676 0.000000e+00 952.0
7 TraesCS7B01G092800 chr3B 97.135 349 8 1 1 347 520470329 520469981 3.170000e-164 588.0
8 TraesCS7B01G092800 chr1B 95.425 612 23 3 2249 2855 409195205 409195816 0.000000e+00 970.0
9 TraesCS7B01G092800 chr1B 97.135 349 7 2 1 346 198533175 198533523 1.140000e-163 586.0
10 TraesCS7B01G092800 chr4B 95.090 611 24 4 2249 2854 379472227 379471618 0.000000e+00 957.0
11 TraesCS7B01G092800 chr4B 95.050 606 30 0 2249 2854 452920647 452921252 0.000000e+00 953.0
12 TraesCS7B01G092800 chr4B 97.695 347 6 1 1 345 462585775 462586121 1.890000e-166 595.0
13 TraesCS7B01G092800 chr4B 96.591 352 9 2 1 350 52656776 52656426 5.300000e-162 580.0
14 TraesCS7B01G092800 chr2B 95.074 609 25 3 2249 2853 513837699 513838306 0.000000e+00 953.0
15 TraesCS7B01G092800 chr2B 94.926 611 26 3 2249 2855 608307522 608308131 0.000000e+00 952.0
16 TraesCS7B01G092800 chr6B 94.918 610 28 2 2249 2855 82290659 82291268 0.000000e+00 952.0
17 TraesCS7B01G092800 chr7D 94.397 589 31 2 1232 1819 140846405 140846992 0.000000e+00 904.0
18 TraesCS7B01G092800 chr7D 91.007 556 27 8 347 883 140844969 140845520 0.000000e+00 728.0
19 TraesCS7B01G092800 chr7D 92.442 344 20 4 865 1208 140845552 140845889 1.190000e-133 486.0
20 TraesCS7B01G092800 chr7D 91.643 347 7 4 1814 2141 140861135 140861478 7.210000e-126 460.0
21 TraesCS7B01G092800 chr7D 79.841 630 110 13 1229 1851 138508828 138508209 7.260000e-121 444.0
22 TraesCS7B01G092800 chr7D 72.861 409 111 0 1266 1674 12734283 12733875 1.070000e-29 141.0
23 TraesCS7B01G092800 chr7A 91.118 653 58 0 1206 1858 143079839 143080491 0.000000e+00 885.0
24 TraesCS7B01G092800 chr7A 92.938 354 15 4 863 1208 143079436 143079787 9.130000e-140 507.0
25 TraesCS7B01G092800 chr7A 78.686 624 120 10 1233 1851 138742052 138741437 1.230000e-108 403.0
26 TraesCS7B01G092800 chr7A 83.505 291 39 6 596 883 143079116 143079400 2.180000e-66 263.0
27 TraesCS7B01G092800 chr7A 91.477 176 10 2 1966 2136 143080803 143080978 1.320000e-58 237.0
28 TraesCS7B01G092800 chr7A 99.038 104 1 0 1866 1969 143080541 143080644 1.350000e-43 187.0
29 TraesCS7B01G092800 chr7A 73.201 403 108 0 1266 1668 12309907 12309505 2.290000e-31 147.0
30 TraesCS7B01G092800 chr7A 80.899 178 25 7 595 771 138752073 138751904 6.420000e-27 132.0
31 TraesCS7B01G092800 chr7A 85.333 75 11 0 677 751 12010700 12010774 8.480000e-11 78.7
32 TraesCS7B01G092800 chr6A 97.399 346 7 1 1 344 153686865 153686520 3.170000e-164 588.0
33 TraesCS7B01G092800 chr2A 97.399 346 7 1 1 344 59355997 59356342 3.170000e-164 588.0
34 TraesCS7B01G092800 chr1A 96.591 352 10 1 1 350 519250474 519250123 1.470000e-162 582.0
35 TraesCS7B01G092800 chr4A 72.705 403 110 0 1266 1668 724854985 724855387 4.960000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G092800 chr7B 106127383 106130237 2854 False 5273.0 5273 100.000000 1 2855 1 chr7B.!!$F1 2854
1 TraesCS7B01G092800 chr7B 173100564 173101176 612 False 965.0 965 95.269000 2249 2854 1 chr7B.!!$F2 605
2 TraesCS7B01G092800 chr7B 104004799 104005418 619 True 416.0 416 79.147000 1229 1851 1 chr7B.!!$R1 622
3 TraesCS7B01G092800 chr3B 388919909 388920516 607 False 972.0 972 95.567000 2249 2854 1 chr3B.!!$F1 605
4 TraesCS7B01G092800 chr3B 699645067 699645676 609 False 952.0 952 94.918000 2249 2854 1 chr3B.!!$F2 605
5 TraesCS7B01G092800 chr1B 409195205 409195816 611 False 970.0 970 95.425000 2249 2855 1 chr1B.!!$F2 606
6 TraesCS7B01G092800 chr4B 379471618 379472227 609 True 957.0 957 95.090000 2249 2854 1 chr4B.!!$R2 605
7 TraesCS7B01G092800 chr4B 452920647 452921252 605 False 953.0 953 95.050000 2249 2854 1 chr4B.!!$F1 605
8 TraesCS7B01G092800 chr2B 513837699 513838306 607 False 953.0 953 95.074000 2249 2853 1 chr2B.!!$F1 604
9 TraesCS7B01G092800 chr2B 608307522 608308131 609 False 952.0 952 94.926000 2249 2855 1 chr2B.!!$F2 606
10 TraesCS7B01G092800 chr6B 82290659 82291268 609 False 952.0 952 94.918000 2249 2855 1 chr6B.!!$F1 606
11 TraesCS7B01G092800 chr7D 140844969 140846992 2023 False 706.0 904 92.615333 347 1819 3 chr7D.!!$F2 1472
12 TraesCS7B01G092800 chr7D 138508209 138508828 619 True 444.0 444 79.841000 1229 1851 1 chr7D.!!$R2 622
13 TraesCS7B01G092800 chr7A 143079116 143080978 1862 False 415.8 885 91.615200 596 2136 5 chr7A.!!$F2 1540
14 TraesCS7B01G092800 chr7A 138741437 138742052 615 True 403.0 403 78.686000 1233 1851 1 chr7A.!!$R2 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.04210 CGAAGATCTCGTCGCGATGA 60.042 55.0 27.99 27.99 42.89 2.92 F
1425 1998 0.03309 ACAGAACCGGACGTTTCCTC 59.967 55.0 9.46 0.00 40.23 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 2213 0.179187 ACGACGTGAGAGCTTGATCG 60.179 55.0 0.00 0.00 0.0 3.69 R
2503 3286 0.747255 GTTCTAGATCGGCAGCCTGA 59.253 55.0 10.54 9.18 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.971032 GCACAAAGCAGTACTGAAGTT 57.029 42.857 27.08 12.74 44.79 2.66
27 28 4.773510 GCACAAAGCAGTACTGAAGTTAC 58.226 43.478 27.08 7.42 44.79 2.50
28 29 4.272504 GCACAAAGCAGTACTGAAGTTACA 59.727 41.667 27.08 0.00 44.79 2.41
29 30 5.738370 CACAAAGCAGTACTGAAGTTACAC 58.262 41.667 27.08 5.92 0.00 2.90
30 31 5.293324 CACAAAGCAGTACTGAAGTTACACA 59.707 40.000 27.08 0.00 0.00 3.72
31 32 5.878116 ACAAAGCAGTACTGAAGTTACACAA 59.122 36.000 27.08 0.00 0.00 3.33
32 33 6.542370 ACAAAGCAGTACTGAAGTTACACAAT 59.458 34.615 27.08 0.00 0.00 2.71
33 34 7.713507 ACAAAGCAGTACTGAAGTTACACAATA 59.286 33.333 27.08 0.00 0.00 1.90
34 35 7.653767 AAGCAGTACTGAAGTTACACAATAC 57.346 36.000 27.08 3.26 0.00 1.89
35 36 6.755206 AGCAGTACTGAAGTTACACAATACA 58.245 36.000 27.08 0.00 0.00 2.29
36 37 6.868864 AGCAGTACTGAAGTTACACAATACAG 59.131 38.462 27.08 0.00 0.00 2.74
37 38 6.401153 GCAGTACTGAAGTTACACAATACAGC 60.401 42.308 27.08 0.04 0.00 4.40
38 39 5.862323 AGTACTGAAGTTACACAATACAGCG 59.138 40.000 0.00 0.00 0.00 5.18
39 40 3.432252 ACTGAAGTTACACAATACAGCGC 59.568 43.478 0.00 0.00 0.00 5.92
40 41 2.739913 TGAAGTTACACAATACAGCGCC 59.260 45.455 2.29 0.00 0.00 6.53
41 42 2.465860 AGTTACACAATACAGCGCCA 57.534 45.000 2.29 0.00 0.00 5.69
42 43 2.773487 AGTTACACAATACAGCGCCAA 58.227 42.857 2.29 0.00 0.00 4.52
43 44 3.142951 AGTTACACAATACAGCGCCAAA 58.857 40.909 2.29 0.00 0.00 3.28
44 45 3.188460 AGTTACACAATACAGCGCCAAAG 59.812 43.478 2.29 0.00 0.00 2.77
45 46 1.604604 ACACAATACAGCGCCAAAGT 58.395 45.000 2.29 0.00 0.00 2.66
46 47 1.953686 ACACAATACAGCGCCAAAGTT 59.046 42.857 2.29 0.00 0.00 2.66
47 48 2.287547 ACACAATACAGCGCCAAAGTTG 60.288 45.455 2.29 6.18 0.00 3.16
80 81 7.969387 AAAATTTCGTCGAAACATATCCATG 57.031 32.000 21.91 0.00 34.23 3.66
81 82 4.530094 TTTCGTCGAAACATATCCATGC 57.470 40.909 16.22 0.00 35.39 4.06
82 83 2.124122 TCGTCGAAACATATCCATGCG 58.876 47.619 0.00 0.00 35.39 4.73
83 84 1.192312 CGTCGAAACATATCCATGCGG 59.808 52.381 0.00 0.00 35.39 5.69
84 85 1.531149 GTCGAAACATATCCATGCGGG 59.469 52.381 0.00 0.00 35.39 6.13
94 95 2.910688 TCCATGCGGGATCTAGTTTC 57.089 50.000 0.00 0.00 42.15 2.78
95 96 1.068588 TCCATGCGGGATCTAGTTTCG 59.931 52.381 0.00 0.00 42.15 3.46
96 97 1.068588 CCATGCGGGATCTAGTTTCGA 59.931 52.381 0.00 0.00 40.01 3.71
97 98 2.483013 CCATGCGGGATCTAGTTTCGAA 60.483 50.000 0.00 0.00 40.01 3.71
98 99 2.579207 TGCGGGATCTAGTTTCGAAG 57.421 50.000 0.00 0.00 0.00 3.79
99 100 2.097036 TGCGGGATCTAGTTTCGAAGA 58.903 47.619 0.00 0.00 0.00 2.87
100 101 2.693591 TGCGGGATCTAGTTTCGAAGAT 59.306 45.455 0.00 0.00 35.04 2.40
101 102 3.243434 TGCGGGATCTAGTTTCGAAGATC 60.243 47.826 14.01 14.01 44.88 2.75
102 103 3.004944 GCGGGATCTAGTTTCGAAGATCT 59.995 47.826 19.29 12.50 44.94 2.75
103 104 4.789784 CGGGATCTAGTTTCGAAGATCTC 58.210 47.826 19.29 16.19 44.94 2.75
111 112 4.903730 CGAAGATCTCGTCGCGAT 57.096 55.556 14.06 0.00 42.89 4.58
112 113 2.404753 CGAAGATCTCGTCGCGATG 58.595 57.895 22.29 22.29 42.89 3.84
113 114 0.042100 CGAAGATCTCGTCGCGATGA 60.042 55.000 27.99 27.99 42.89 2.92
114 115 1.594760 CGAAGATCTCGTCGCGATGAA 60.595 52.381 29.24 20.39 42.89 2.57
115 116 2.656085 GAAGATCTCGTCGCGATGAAT 58.344 47.619 29.24 23.50 34.61 2.57
116 117 2.323939 AGATCTCGTCGCGATGAATC 57.676 50.000 29.24 28.26 34.61 2.52
117 118 1.068885 AGATCTCGTCGCGATGAATCC 60.069 52.381 29.24 20.01 34.61 3.01
118 119 0.668535 ATCTCGTCGCGATGAATCCA 59.331 50.000 29.24 15.16 34.61 3.41
119 120 0.454196 TCTCGTCGCGATGAATCCAA 59.546 50.000 29.24 11.65 34.61 3.53
120 121 0.572590 CTCGTCGCGATGAATCCAAC 59.427 55.000 29.24 5.61 34.61 3.77
121 122 1.137459 TCGTCGCGATGAATCCAACG 61.137 55.000 27.85 16.06 40.84 4.10
122 123 1.636340 GTCGCGATGAATCCAACGG 59.364 57.895 14.06 0.00 38.73 4.44
123 124 1.082117 GTCGCGATGAATCCAACGGT 61.082 55.000 14.06 0.00 38.73 4.83
124 125 1.081556 TCGCGATGAATCCAACGGTG 61.082 55.000 3.71 0.00 38.73 4.94
125 126 1.081556 CGCGATGAATCCAACGGTGA 61.082 55.000 0.00 0.00 38.73 4.02
126 127 1.083489 GCGATGAATCCAACGGTGAA 58.917 50.000 0.00 0.00 38.73 3.18
127 128 1.062587 GCGATGAATCCAACGGTGAAG 59.937 52.381 0.00 0.00 38.73 3.02
128 129 2.616960 CGATGAATCCAACGGTGAAGA 58.383 47.619 0.00 0.00 35.33 2.87
129 130 2.348666 CGATGAATCCAACGGTGAAGAC 59.651 50.000 0.00 0.00 35.33 3.01
130 131 1.790755 TGAATCCAACGGTGAAGACG 58.209 50.000 0.00 0.00 37.36 4.18
131 132 1.076332 GAATCCAACGGTGAAGACGG 58.924 55.000 0.00 0.00 35.23 4.79
132 133 0.682852 AATCCAACGGTGAAGACGGA 59.317 50.000 0.00 0.00 35.23 4.69
133 134 0.902531 ATCCAACGGTGAAGACGGAT 59.097 50.000 0.00 0.00 35.23 4.18
134 135 0.245539 TCCAACGGTGAAGACGGATC 59.754 55.000 0.00 0.00 35.23 3.36
135 136 0.246635 CCAACGGTGAAGACGGATCT 59.753 55.000 0.00 0.00 36.42 2.75
136 137 1.350193 CAACGGTGAAGACGGATCTG 58.650 55.000 0.00 0.00 34.48 2.90
137 138 1.067846 CAACGGTGAAGACGGATCTGA 60.068 52.381 9.00 0.00 34.48 3.27
138 139 1.254026 ACGGTGAAGACGGATCTGAA 58.746 50.000 9.00 0.00 34.48 3.02
139 140 1.825474 ACGGTGAAGACGGATCTGAAT 59.175 47.619 9.00 0.00 34.48 2.57
140 141 2.233922 ACGGTGAAGACGGATCTGAATT 59.766 45.455 9.00 1.98 34.48 2.17
141 142 2.860735 CGGTGAAGACGGATCTGAATTC 59.139 50.000 9.00 11.79 34.48 2.17
142 143 3.198872 GGTGAAGACGGATCTGAATTCC 58.801 50.000 9.00 6.12 34.48 3.01
149 150 2.295253 GGATCTGAATTCCGACGTGT 57.705 50.000 2.27 0.00 0.00 4.49
150 151 1.927174 GGATCTGAATTCCGACGTGTG 59.073 52.381 2.27 0.00 0.00 3.82
151 152 1.927174 GATCTGAATTCCGACGTGTGG 59.073 52.381 2.27 0.00 0.00 4.17
152 153 0.677288 TCTGAATTCCGACGTGTGGT 59.323 50.000 2.27 0.00 0.00 4.16
153 154 1.069513 TCTGAATTCCGACGTGTGGTT 59.930 47.619 2.27 0.00 0.00 3.67
154 155 1.871039 CTGAATTCCGACGTGTGGTTT 59.129 47.619 2.27 0.00 0.00 3.27
155 156 3.061322 CTGAATTCCGACGTGTGGTTTA 58.939 45.455 2.27 0.00 0.00 2.01
156 157 3.464907 TGAATTCCGACGTGTGGTTTAA 58.535 40.909 2.27 0.00 0.00 1.52
157 158 3.875727 TGAATTCCGACGTGTGGTTTAAA 59.124 39.130 2.27 0.00 0.00 1.52
158 159 4.334759 TGAATTCCGACGTGTGGTTTAAAA 59.665 37.500 2.27 0.00 0.00 1.52
159 160 3.948196 TTCCGACGTGTGGTTTAAAAG 57.052 42.857 0.00 0.00 0.00 2.27
160 161 3.176552 TCCGACGTGTGGTTTAAAAGA 57.823 42.857 0.00 0.00 0.00 2.52
161 162 3.731089 TCCGACGTGTGGTTTAAAAGAT 58.269 40.909 0.00 0.00 0.00 2.40
162 163 4.880759 TCCGACGTGTGGTTTAAAAGATA 58.119 39.130 0.00 0.00 0.00 1.98
163 164 4.685628 TCCGACGTGTGGTTTAAAAGATAC 59.314 41.667 0.00 0.00 0.00 2.24
164 165 4.433283 CCGACGTGTGGTTTAAAAGATACG 60.433 45.833 12.55 12.55 36.48 3.06
165 166 4.382457 CGACGTGTGGTTTAAAAGATACGA 59.618 41.667 18.04 0.00 34.71 3.43
166 167 5.580911 ACGTGTGGTTTAAAAGATACGAC 57.419 39.130 18.04 3.98 34.71 4.34
167 168 5.291971 ACGTGTGGTTTAAAAGATACGACT 58.708 37.500 18.04 1.35 34.71 4.18
168 169 5.754890 ACGTGTGGTTTAAAAGATACGACTT 59.245 36.000 18.04 0.00 34.71 3.01
169 170 6.258507 ACGTGTGGTTTAAAAGATACGACTTT 59.741 34.615 18.04 0.00 41.09 2.66
170 171 7.127686 CGTGTGGTTTAAAAGATACGACTTTT 58.872 34.615 17.59 17.59 46.94 2.27
171 172 7.641020 CGTGTGGTTTAAAAGATACGACTTTTT 59.359 33.333 18.25 9.55 44.33 1.94
172 173 9.934190 GTGTGGTTTAAAAGATACGACTTTTTA 57.066 29.630 18.25 11.00 44.33 1.52
186 187 7.229228 ACGACTTTTTAAAAATTGAAGTGGC 57.771 32.000 13.55 2.21 31.79 5.01
187 188 6.256975 ACGACTTTTTAAAAATTGAAGTGGCC 59.743 34.615 13.55 0.00 31.79 5.36
188 189 6.256757 CGACTTTTTAAAAATTGAAGTGGCCA 59.743 34.615 13.55 0.00 31.24 5.36
189 190 7.201565 CGACTTTTTAAAAATTGAAGTGGCCAA 60.202 33.333 7.24 0.00 31.24 4.52
190 191 8.341892 ACTTTTTAAAAATTGAAGTGGCCAAA 57.658 26.923 7.24 0.00 0.00 3.28
191 192 8.797438 ACTTTTTAAAAATTGAAGTGGCCAAAA 58.203 25.926 7.24 0.00 0.00 2.44
192 193 9.800433 CTTTTTAAAAATTGAAGTGGCCAAAAT 57.200 25.926 7.24 2.34 0.00 1.82
198 199 8.462589 AAAATTGAAGTGGCCAAAATAAATGT 57.537 26.923 7.24 0.00 0.00 2.71
199 200 7.437793 AATTGAAGTGGCCAAAATAAATGTG 57.562 32.000 7.24 0.00 0.00 3.21
200 201 4.314121 TGAAGTGGCCAAAATAAATGTGC 58.686 39.130 7.24 0.00 0.00 4.57
201 202 2.958213 AGTGGCCAAAATAAATGTGCG 58.042 42.857 7.24 0.00 0.00 5.34
202 203 2.298729 AGTGGCCAAAATAAATGTGCGT 59.701 40.909 7.24 0.00 0.00 5.24
203 204 2.411409 GTGGCCAAAATAAATGTGCGTG 59.589 45.455 7.24 0.00 0.00 5.34
204 205 2.297315 TGGCCAAAATAAATGTGCGTGA 59.703 40.909 0.61 0.00 0.00 4.35
205 206 3.243873 TGGCCAAAATAAATGTGCGTGAA 60.244 39.130 0.61 0.00 0.00 3.18
206 207 3.932089 GGCCAAAATAAATGTGCGTGAAT 59.068 39.130 0.00 0.00 0.00 2.57
207 208 4.032786 GGCCAAAATAAATGTGCGTGAATC 59.967 41.667 0.00 0.00 0.00 2.52
208 209 4.864247 GCCAAAATAAATGTGCGTGAATCT 59.136 37.500 0.00 0.00 0.00 2.40
209 210 5.220265 GCCAAAATAAATGTGCGTGAATCTG 60.220 40.000 0.00 0.00 0.00 2.90
210 211 5.863397 CCAAAATAAATGTGCGTGAATCTGT 59.137 36.000 0.00 0.00 0.00 3.41
211 212 6.365789 CCAAAATAAATGTGCGTGAATCTGTT 59.634 34.615 0.00 0.00 0.00 3.16
212 213 7.095691 CCAAAATAAATGTGCGTGAATCTGTTT 60.096 33.333 0.00 0.00 0.00 2.83
213 214 7.945033 AAATAAATGTGCGTGAATCTGTTTT 57.055 28.000 0.00 0.00 0.00 2.43
214 215 7.566858 AATAAATGTGCGTGAATCTGTTTTC 57.433 32.000 0.00 0.00 0.00 2.29
215 216 4.566545 AATGTGCGTGAATCTGTTTTCA 57.433 36.364 0.00 0.00 33.32 2.69
217 218 2.290367 TGTGCGTGAATCTGTTTTCAGG 59.710 45.455 9.68 9.68 46.94 3.86
218 219 2.548057 GTGCGTGAATCTGTTTTCAGGA 59.452 45.455 14.95 3.29 46.94 3.86
219 220 2.548057 TGCGTGAATCTGTTTTCAGGAC 59.452 45.455 14.95 9.48 46.94 3.85
220 221 2.808543 GCGTGAATCTGTTTTCAGGACT 59.191 45.455 14.95 0.00 46.94 3.85
221 222 3.994392 GCGTGAATCTGTTTTCAGGACTA 59.006 43.478 14.95 0.00 46.94 2.59
222 223 4.092091 GCGTGAATCTGTTTTCAGGACTAG 59.908 45.833 14.95 0.00 46.94 2.57
223 224 5.230942 CGTGAATCTGTTTTCAGGACTAGT 58.769 41.667 0.00 0.00 46.94 2.57
224 225 5.346281 CGTGAATCTGTTTTCAGGACTAGTC 59.654 44.000 14.87 14.87 46.94 2.59
239 240 6.823678 GGACTAGTCCGTACACATTTAATG 57.176 41.667 25.83 3.07 40.36 1.90
240 241 6.335777 GGACTAGTCCGTACACATTTAATGT 58.664 40.000 25.83 4.56 41.44 2.71
241 242 6.815142 GGACTAGTCCGTACACATTTAATGTT 59.185 38.462 25.83 3.38 39.85 2.71
242 243 7.975616 GGACTAGTCCGTACACATTTAATGTTA 59.024 37.037 25.83 2.48 39.85 2.41
243 244 9.357652 GACTAGTCCGTACACATTTAATGTTAA 57.642 33.333 12.13 0.00 42.70 2.01
244 245 9.143631 ACTAGTCCGTACACATTTAATGTTAAC 57.856 33.333 7.97 8.38 42.70 2.01
245 246 7.966246 AGTCCGTACACATTTAATGTTAACA 57.034 32.000 11.41 11.41 42.70 2.41
246 247 8.380743 AGTCCGTACACATTTAATGTTAACAA 57.619 30.769 13.23 0.00 42.70 2.83
247 248 8.838365 AGTCCGTACACATTTAATGTTAACAAA 58.162 29.630 13.23 2.84 42.70 2.83
248 249 9.448294 GTCCGTACACATTTAATGTTAACAAAA 57.552 29.630 13.23 10.00 42.70 2.44
264 265 9.278978 TGTTAACAAAATACATTCACTAGCTGA 57.721 29.630 5.64 0.00 0.00 4.26
265 266 9.543018 GTTAACAAAATACATTCACTAGCTGAC 57.457 33.333 0.00 0.00 0.00 3.51
266 267 7.744087 AACAAAATACATTCACTAGCTGACA 57.256 32.000 0.00 0.00 0.00 3.58
267 268 7.744087 ACAAAATACATTCACTAGCTGACAA 57.256 32.000 0.00 0.00 0.00 3.18
268 269 8.165239 ACAAAATACATTCACTAGCTGACAAA 57.835 30.769 0.00 0.00 0.00 2.83
269 270 8.629158 ACAAAATACATTCACTAGCTGACAAAA 58.371 29.630 0.00 0.00 0.00 2.44
270 271 9.462174 CAAAATACATTCACTAGCTGACAAAAA 57.538 29.630 0.00 0.00 0.00 1.94
293 294 6.743575 AAAGACACATGTAAGTAATCAGCC 57.256 37.500 0.00 0.00 0.00 4.85
294 295 4.770795 AGACACATGTAAGTAATCAGCCC 58.229 43.478 0.00 0.00 0.00 5.19
295 296 3.531538 ACACATGTAAGTAATCAGCCCG 58.468 45.455 0.00 0.00 0.00 6.13
296 297 2.872245 CACATGTAAGTAATCAGCCCGG 59.128 50.000 0.00 0.00 0.00 5.73
297 298 1.873591 CATGTAAGTAATCAGCCCGGC 59.126 52.381 0.00 0.00 0.00 6.13
298 299 0.179468 TGTAAGTAATCAGCCCGGCC 59.821 55.000 5.55 0.00 0.00 6.13
299 300 0.878961 GTAAGTAATCAGCCCGGCCG 60.879 60.000 21.04 21.04 0.00 6.13
300 301 2.653953 TAAGTAATCAGCCCGGCCGC 62.654 60.000 22.85 7.17 0.00 6.53
322 323 2.983402 GTTCCTACGAAAAAGTGGGC 57.017 50.000 0.00 0.00 41.80 5.36
323 324 1.196127 GTTCCTACGAAAAAGTGGGCG 59.804 52.381 0.00 0.00 41.80 6.13
324 325 0.393820 TCCTACGAAAAAGTGGGCGT 59.606 50.000 0.00 0.00 41.80 5.68
325 326 0.515564 CCTACGAAAAAGTGGGCGTG 59.484 55.000 0.00 0.00 35.99 5.34
326 327 0.110373 CTACGAAAAAGTGGGCGTGC 60.110 55.000 0.00 0.00 37.56 5.34
327 328 0.814410 TACGAAAAAGTGGGCGTGCA 60.814 50.000 0.00 0.00 37.56 4.57
328 329 1.657181 CGAAAAAGTGGGCGTGCAC 60.657 57.895 6.82 6.82 0.00 4.57
329 330 1.733526 GAAAAAGTGGGCGTGCACT 59.266 52.632 16.19 0.00 0.00 4.40
330 331 0.102300 GAAAAAGTGGGCGTGCACTT 59.898 50.000 16.19 0.00 42.73 3.16
331 332 3.933515 AAAGTGGGCGTGCACTTT 58.066 50.000 16.19 12.66 44.07 2.66
332 333 2.198183 AAAGTGGGCGTGCACTTTT 58.802 47.368 16.19 3.29 45.89 2.27
333 334 1.394618 AAAGTGGGCGTGCACTTTTA 58.605 45.000 16.19 0.00 45.89 1.52
334 335 1.394618 AAGTGGGCGTGCACTTTTAA 58.605 45.000 16.19 0.00 38.35 1.52
335 336 0.951558 AGTGGGCGTGCACTTTTAAG 59.048 50.000 16.19 0.00 0.00 1.85
336 337 0.948678 GTGGGCGTGCACTTTTAAGA 59.051 50.000 16.19 0.00 0.00 2.10
337 338 1.539827 GTGGGCGTGCACTTTTAAGAT 59.460 47.619 16.19 0.00 0.00 2.40
338 339 2.030274 GTGGGCGTGCACTTTTAAGATT 60.030 45.455 16.19 0.00 0.00 2.40
339 340 2.625790 TGGGCGTGCACTTTTAAGATTT 59.374 40.909 16.19 0.00 0.00 2.17
340 341 3.242518 GGGCGTGCACTTTTAAGATTTC 58.757 45.455 16.19 0.00 0.00 2.17
341 342 3.305064 GGGCGTGCACTTTTAAGATTTCA 60.305 43.478 16.19 0.00 0.00 2.69
342 343 3.914364 GGCGTGCACTTTTAAGATTTCAG 59.086 43.478 16.19 0.00 0.00 3.02
343 344 3.914364 GCGTGCACTTTTAAGATTTCAGG 59.086 43.478 16.19 0.00 0.00 3.86
344 345 4.556699 GCGTGCACTTTTAAGATTTCAGGT 60.557 41.667 16.19 0.00 0.00 4.00
345 346 5.334569 GCGTGCACTTTTAAGATTTCAGGTA 60.335 40.000 16.19 0.00 0.00 3.08
383 384 3.038417 GATCCGGCCTGCGAATCG 61.038 66.667 0.00 0.00 0.00 3.34
403 404 0.861837 CTCGCTGCGTTTCAAGAAGT 59.138 50.000 22.48 0.00 0.00 3.01
415 416 6.472486 GCGTTTCAAGAAGTAGCTTTTCTTTT 59.528 34.615 18.16 4.02 41.60 2.27
421 422 6.202202 AGAAGTAGCTTTTCTTTTAGGGGT 57.798 37.500 7.21 0.00 30.98 4.95
425 426 5.768662 AGTAGCTTTTCTTTTAGGGGTGTTC 59.231 40.000 0.00 0.00 0.00 3.18
428 429 4.283467 GCTTTTCTTTTAGGGGTGTTCCAT 59.717 41.667 0.00 0.00 37.22 3.41
429 430 5.221641 GCTTTTCTTTTAGGGGTGTTCCATT 60.222 40.000 0.00 0.00 37.22 3.16
430 431 6.413783 TTTTCTTTTAGGGGTGTTCCATTC 57.586 37.500 0.00 0.00 37.22 2.67
431 432 4.733077 TCTTTTAGGGGTGTTCCATTCA 57.267 40.909 0.00 0.00 37.22 2.57
432 433 5.068215 TCTTTTAGGGGTGTTCCATTCAA 57.932 39.130 0.00 0.00 37.22 2.69
455 464 2.105128 GCTAGTGCGACGATGCCT 59.895 61.111 0.00 0.00 0.00 4.75
459 468 1.091197 TAGTGCGACGATGCCTACGA 61.091 55.000 0.00 0.00 34.70 3.43
482 491 4.804420 AGATCCAGGGCGAGGGCA 62.804 66.667 0.00 0.00 42.47 5.36
839 858 1.753073 CCTGCCTCCATTCCACAATTC 59.247 52.381 0.00 0.00 0.00 2.17
936 1009 3.244840 GGATCAAAGCAGCATCTATCCCT 60.245 47.826 0.00 0.00 0.00 4.20
938 1011 2.507058 TCAAAGCAGCATCTATCCCTGT 59.493 45.455 0.00 0.00 0.00 4.00
939 1012 2.617308 CAAAGCAGCATCTATCCCTGTG 59.383 50.000 0.00 0.00 0.00 3.66
1014 1095 3.201290 GCAGATCATGTCGGTCAAGATT 58.799 45.455 0.00 0.00 35.09 2.40
1071 1152 1.082756 GTTTGGTCTCGTTGCTGCG 60.083 57.895 0.00 0.00 0.00 5.18
1163 1244 6.164176 CCGAAGAGGTTTGTATGTTCTTACT 58.836 40.000 0.00 0.00 34.51 2.24
1167 1248 7.317722 AGAGGTTTGTATGTTCTTACTCCTT 57.682 36.000 0.00 0.00 0.00 3.36
1168 1249 7.746703 AGAGGTTTGTATGTTCTTACTCCTTT 58.253 34.615 0.00 0.00 0.00 3.11
1182 1263 6.546034 TCTTACTCCTTTGTTTTCCTTTCCAG 59.454 38.462 0.00 0.00 0.00 3.86
1211 1346 4.556942 TCTCTGTCAATTGTTTGCAGTG 57.443 40.909 5.13 10.34 37.79 3.66
1222 1357 7.860373 TCAATTGTTTGCAGTGTTACTATTGAC 59.140 33.333 17.75 0.00 37.61 3.18
1227 1362 5.585500 TGCAGTGTTACTATTGACGAAAC 57.415 39.130 0.00 0.00 0.00 2.78
1245 1818 6.398918 ACGAAACAGAGCATAATTACTGACT 58.601 36.000 7.58 0.00 34.88 3.41
1249 1822 7.757097 AACAGAGCATAATTACTGACTTACG 57.243 36.000 7.58 0.00 34.88 3.18
1250 1823 5.749109 ACAGAGCATAATTACTGACTTACGC 59.251 40.000 7.58 0.00 34.88 4.42
1290 1863 5.314529 CAGGATCCATATCTTGCATTGACT 58.685 41.667 15.82 0.00 33.07 3.41
1366 1939 3.070018 CTGAAAGTCAAGGGCACTACTG 58.930 50.000 0.00 0.00 0.00 2.74
1402 1975 0.371645 CCTGAGCGATCTCGTTTTGC 59.628 55.000 0.90 0.00 42.26 3.68
1425 1998 0.033090 ACAGAACCGGACGTTTCCTC 59.967 55.000 9.46 0.00 40.23 3.71
1426 1999 1.007336 CAGAACCGGACGTTTCCTCG 61.007 60.000 9.46 0.00 40.23 4.63
1438 2011 0.971386 TTTCCTCGGCGGTCTTTACT 59.029 50.000 7.21 0.00 0.00 2.24
1470 2043 1.782028 GCACGTTGGAACTCGCCTTT 61.782 55.000 0.00 0.00 0.00 3.11
1505 2078 2.362717 GCTCCGTAGAGGCTACAATCTT 59.637 50.000 5.55 0.00 40.79 2.40
1519 2092 9.350951 AGGCTACAATCTTTGTAAAACTAACTT 57.649 29.630 2.13 0.00 44.80 2.66
1624 2197 2.668632 GAGATGACGGGTTGCCCA 59.331 61.111 4.96 0.00 45.83 5.36
1653 2226 2.202797 GGCGCGATCAAGCTCTCA 60.203 61.111 12.10 0.00 34.40 3.27
1689 2262 7.962995 TTCTATTGGACATGTAGAGTCTCTT 57.037 36.000 7.89 0.00 36.29 2.85
1935 2550 3.574284 TGTACCATTTGCATGCTCAAC 57.426 42.857 20.33 7.91 0.00 3.18
1986 2763 9.190317 TGTAGTACTAGCTAATGATGATATGGG 57.810 37.037 1.87 0.00 0.00 4.00
2052 2831 5.433526 AGTAATATTTGGCCACTTCGCTAA 58.566 37.500 3.88 0.00 0.00 3.09
2056 2835 0.394938 TTGGCCACTTCGCTAACTCA 59.605 50.000 3.88 0.00 0.00 3.41
2065 2844 6.237861 GCCACTTCGCTAACTCAAGTTTATAG 60.238 42.308 0.00 0.00 39.31 1.31
2090 2872 9.431887 AGTTATGTATGTGTAATTGTTTCGACT 57.568 29.630 0.00 0.00 0.00 4.18
2109 2891 4.690748 CGACTAACTCATTTTGGCTCAAGA 59.309 41.667 0.00 0.00 0.00 3.02
2111 2893 3.904136 AACTCATTTTGGCTCAAGACG 57.096 42.857 0.00 0.00 0.00 4.18
2156 2938 6.648879 TTTTTACACAGAGATCCCTTTTGG 57.351 37.500 0.00 0.00 39.97 3.28
2164 2946 4.360405 TCCCTTTTGGAGCCCGGC 62.360 66.667 0.00 0.00 44.07 6.13
2166 2948 4.366684 CCTTTTGGAGCCCGGCCT 62.367 66.667 5.55 0.00 44.07 5.19
2167 2949 2.751837 CTTTTGGAGCCCGGCCTC 60.752 66.667 3.19 3.19 0.00 4.70
2173 2955 3.797353 GAGCCCGGCCTCCAATGA 61.797 66.667 5.55 0.00 0.00 2.57
2174 2956 3.764160 GAGCCCGGCCTCCAATGAG 62.764 68.421 5.55 0.00 38.42 2.90
2175 2957 4.115199 GCCCGGCCTCCAATGAGT 62.115 66.667 0.00 0.00 36.86 3.41
2176 2958 2.190578 CCCGGCCTCCAATGAGTC 59.809 66.667 0.00 0.00 36.86 3.36
2177 2959 2.190578 CCGGCCTCCAATGAGTCC 59.809 66.667 0.00 0.00 36.86 3.85
2178 2960 2.370445 CCGGCCTCCAATGAGTCCT 61.370 63.158 0.00 0.00 34.37 3.85
2179 2961 1.144936 CGGCCTCCAATGAGTCCTC 59.855 63.158 0.00 0.00 34.37 3.71
2180 2962 1.529309 GGCCTCCAATGAGTCCTCC 59.471 63.158 0.00 0.00 33.72 4.30
2181 2963 1.274703 GGCCTCCAATGAGTCCTCCA 61.275 60.000 0.00 0.00 33.72 3.86
2182 2964 0.620556 GCCTCCAATGAGTCCTCCAA 59.379 55.000 0.00 0.00 36.86 3.53
2183 2965 1.004745 GCCTCCAATGAGTCCTCCAAA 59.995 52.381 0.00 0.00 36.86 3.28
2184 2966 2.716217 CCTCCAATGAGTCCTCCAAAC 58.284 52.381 0.00 0.00 36.86 2.93
2185 2967 2.307098 CCTCCAATGAGTCCTCCAAACT 59.693 50.000 0.00 0.00 36.86 2.66
2186 2968 3.604582 CTCCAATGAGTCCTCCAAACTC 58.395 50.000 0.00 0.00 42.83 3.01
2187 2969 2.028112 TCCAATGAGTCCTCCAAACTCG 60.028 50.000 0.00 0.00 44.96 4.18
2188 2970 2.028112 CCAATGAGTCCTCCAAACTCGA 60.028 50.000 0.00 0.00 44.96 4.04
2189 2971 3.557054 CCAATGAGTCCTCCAAACTCGAA 60.557 47.826 0.00 0.00 44.96 3.71
2190 2972 4.065088 CAATGAGTCCTCCAAACTCGAAA 58.935 43.478 0.00 0.00 44.96 3.46
2191 2973 4.559862 ATGAGTCCTCCAAACTCGAAAT 57.440 40.909 0.00 0.00 44.96 2.17
2192 2974 4.351874 TGAGTCCTCCAAACTCGAAATT 57.648 40.909 0.00 0.00 44.96 1.82
2193 2975 4.315803 TGAGTCCTCCAAACTCGAAATTC 58.684 43.478 0.00 0.00 44.96 2.17
2194 2976 4.202315 TGAGTCCTCCAAACTCGAAATTCA 60.202 41.667 0.00 0.00 44.96 2.57
2195 2977 4.911390 AGTCCTCCAAACTCGAAATTCAT 58.089 39.130 0.00 0.00 0.00 2.57
2196 2978 6.049955 AGTCCTCCAAACTCGAAATTCATA 57.950 37.500 0.00 0.00 0.00 2.15
2197 2979 6.653989 AGTCCTCCAAACTCGAAATTCATAT 58.346 36.000 0.00 0.00 0.00 1.78
2198 2980 7.112779 AGTCCTCCAAACTCGAAATTCATATT 58.887 34.615 0.00 0.00 0.00 1.28
2199 2981 7.611855 AGTCCTCCAAACTCGAAATTCATATTT 59.388 33.333 0.00 0.00 36.68 1.40
2200 2982 7.910683 GTCCTCCAAACTCGAAATTCATATTTC 59.089 37.037 0.00 0.00 44.00 2.17
2201 2983 7.609918 TCCTCCAAACTCGAAATTCATATTTCA 59.390 33.333 10.25 0.00 46.52 2.69
2202 2984 8.408601 CCTCCAAACTCGAAATTCATATTTCAT 58.591 33.333 10.25 0.00 46.52 2.57
2297 3080 6.821665 GCCCAATATGCGATACTATCCTAAAA 59.178 38.462 0.00 0.00 0.00 1.52
2311 3094 5.740290 ATCCTAAAAAGACTCGAAGGTCA 57.260 39.130 7.47 0.00 38.57 4.02
2328 3111 2.304761 GGTCACACCAAGGATAGAACCA 59.695 50.000 0.00 0.00 38.42 3.67
2503 3286 1.680522 CGACATCCACCCTGCTAGCT 61.681 60.000 17.23 0.00 0.00 3.32
2540 3323 3.137360 AGAACCTATCCCCTGATCAAAGC 59.863 47.826 0.00 0.00 32.18 3.51
2601 3391 2.413112 CGTCATGATCATCGCATAACCC 59.587 50.000 4.86 0.00 0.00 4.11
2742 3532 4.488879 CAGCAGCGACTAAGCATATATGA 58.511 43.478 17.10 0.00 40.15 2.15
2800 3590 3.502237 GGAACGGTCGTGAAGCTAA 57.498 52.632 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.971032 AACTTCAGTACTGCTTTGTGC 57.029 42.857 18.45 0.00 43.25 4.57
6 7 5.293324 TGTGTAACTTCAGTACTGCTTTGTG 59.707 40.000 18.45 6.54 38.04 3.33
7 8 5.424757 TGTGTAACTTCAGTACTGCTTTGT 58.575 37.500 18.45 10.38 38.04 2.83
8 9 5.984233 TGTGTAACTTCAGTACTGCTTTG 57.016 39.130 18.45 9.79 38.04 2.77
9 10 7.713507 TGTATTGTGTAACTTCAGTACTGCTTT 59.286 33.333 18.45 12.30 38.04 3.51
10 11 7.214381 TGTATTGTGTAACTTCAGTACTGCTT 58.786 34.615 18.45 10.98 38.04 3.91
11 12 6.755206 TGTATTGTGTAACTTCAGTACTGCT 58.245 36.000 18.45 5.08 38.04 4.24
12 13 6.401153 GCTGTATTGTGTAACTTCAGTACTGC 60.401 42.308 18.45 3.53 40.78 4.40
13 14 6.183359 CGCTGTATTGTGTAACTTCAGTACTG 60.183 42.308 17.17 17.17 38.04 2.74
14 15 5.862323 CGCTGTATTGTGTAACTTCAGTACT 59.138 40.000 0.00 0.00 38.04 2.73
15 16 5.444218 GCGCTGTATTGTGTAACTTCAGTAC 60.444 44.000 0.00 0.00 38.04 2.73
16 17 4.624024 GCGCTGTATTGTGTAACTTCAGTA 59.376 41.667 0.00 0.00 38.04 2.74
17 18 3.432252 GCGCTGTATTGTGTAACTTCAGT 59.568 43.478 0.00 0.00 38.04 3.41
18 19 3.181520 GGCGCTGTATTGTGTAACTTCAG 60.182 47.826 7.64 0.00 38.04 3.02
19 20 2.739913 GGCGCTGTATTGTGTAACTTCA 59.260 45.455 7.64 0.00 38.04 3.02
20 21 2.739913 TGGCGCTGTATTGTGTAACTTC 59.260 45.455 7.64 0.00 38.04 3.01
21 22 2.773487 TGGCGCTGTATTGTGTAACTT 58.227 42.857 7.64 0.00 38.04 2.66
22 23 2.465860 TGGCGCTGTATTGTGTAACT 57.534 45.000 7.64 0.00 38.04 2.24
23 24 3.058501 ACTTTGGCGCTGTATTGTGTAAC 60.059 43.478 7.64 0.00 37.35 2.50
24 25 3.142951 ACTTTGGCGCTGTATTGTGTAA 58.857 40.909 7.64 0.00 0.00 2.41
25 26 2.773487 ACTTTGGCGCTGTATTGTGTA 58.227 42.857 7.64 0.00 0.00 2.90
26 27 1.604604 ACTTTGGCGCTGTATTGTGT 58.395 45.000 7.64 0.00 0.00 3.72
27 28 2.318578 CAACTTTGGCGCTGTATTGTG 58.681 47.619 7.64 0.00 0.00 3.33
28 29 1.269448 CCAACTTTGGCGCTGTATTGT 59.731 47.619 7.64 0.00 42.21 2.71
29 30 1.981254 CCAACTTTGGCGCTGTATTG 58.019 50.000 7.64 6.18 42.21 1.90
55 56 7.009174 GCATGGATATGTTTCGACGAAATTTTT 59.991 33.333 24.48 11.42 36.65 1.94
56 57 6.472163 GCATGGATATGTTTCGACGAAATTTT 59.528 34.615 24.48 14.82 36.65 1.82
57 58 5.971202 GCATGGATATGTTTCGACGAAATTT 59.029 36.000 24.48 16.99 36.65 1.82
58 59 5.510671 GCATGGATATGTTTCGACGAAATT 58.489 37.500 24.48 17.31 36.65 1.82
59 60 4.318760 CGCATGGATATGTTTCGACGAAAT 60.319 41.667 24.48 13.13 36.65 2.17
60 61 3.000825 CGCATGGATATGTTTCGACGAAA 59.999 43.478 18.66 18.66 36.65 3.46
61 62 2.538037 CGCATGGATATGTTTCGACGAA 59.462 45.455 6.10 6.10 36.65 3.85
62 63 2.124122 CGCATGGATATGTTTCGACGA 58.876 47.619 0.00 0.00 36.65 4.20
63 64 1.192312 CCGCATGGATATGTTTCGACG 59.808 52.381 0.00 0.00 37.49 5.12
64 65 1.531149 CCCGCATGGATATGTTTCGAC 59.469 52.381 0.00 0.00 37.49 4.20
65 66 1.414550 TCCCGCATGGATATGTTTCGA 59.585 47.619 0.00 0.00 38.61 3.71
66 67 1.877637 TCCCGCATGGATATGTTTCG 58.122 50.000 0.00 0.00 38.61 3.46
76 77 1.068588 TCGAAACTAGATCCCGCATGG 59.931 52.381 0.00 0.00 0.00 3.66
77 78 2.509052 TCGAAACTAGATCCCGCATG 57.491 50.000 0.00 0.00 0.00 4.06
78 79 2.693591 TCTTCGAAACTAGATCCCGCAT 59.306 45.455 0.00 0.00 0.00 4.73
79 80 2.097036 TCTTCGAAACTAGATCCCGCA 58.903 47.619 0.00 0.00 0.00 5.69
80 81 2.865343 TCTTCGAAACTAGATCCCGC 57.135 50.000 0.00 0.00 0.00 6.13
81 82 4.789784 GAGATCTTCGAAACTAGATCCCG 58.210 47.826 17.33 0.00 45.05 5.14
95 96 2.106750 TTCATCGCGACGAGATCTTC 57.893 50.000 12.93 0.00 39.91 2.87
96 97 2.605823 GGATTCATCGCGACGAGATCTT 60.606 50.000 12.93 0.00 39.91 2.40
97 98 1.068885 GGATTCATCGCGACGAGATCT 60.069 52.381 12.93 0.00 39.91 2.75
98 99 1.332178 GGATTCATCGCGACGAGATC 58.668 55.000 12.93 14.09 39.91 2.75
99 100 0.668535 TGGATTCATCGCGACGAGAT 59.331 50.000 12.93 8.37 39.91 2.75
100 101 0.454196 TTGGATTCATCGCGACGAGA 59.546 50.000 12.93 7.38 39.91 4.04
101 102 0.572590 GTTGGATTCATCGCGACGAG 59.427 55.000 12.93 4.56 39.91 4.18
102 103 1.137459 CGTTGGATTCATCGCGACGA 61.137 55.000 12.93 5.54 41.13 4.20
103 104 1.269810 CGTTGGATTCATCGCGACG 59.730 57.895 12.93 1.83 32.62 5.12
104 105 1.082117 ACCGTTGGATTCATCGCGAC 61.082 55.000 12.93 0.00 35.46 5.19
105 106 1.081556 CACCGTTGGATTCATCGCGA 61.082 55.000 13.09 13.09 35.46 5.87
106 107 1.081556 TCACCGTTGGATTCATCGCG 61.082 55.000 0.00 0.00 35.46 5.87
107 108 1.062587 CTTCACCGTTGGATTCATCGC 59.937 52.381 0.00 0.00 35.46 4.58
108 109 2.348666 GTCTTCACCGTTGGATTCATCG 59.651 50.000 0.00 0.00 36.26 3.84
109 110 2.348666 CGTCTTCACCGTTGGATTCATC 59.651 50.000 0.00 0.00 0.00 2.92
110 111 2.346803 CGTCTTCACCGTTGGATTCAT 58.653 47.619 0.00 0.00 0.00 2.57
111 112 1.606994 CCGTCTTCACCGTTGGATTCA 60.607 52.381 0.00 0.00 0.00 2.57
112 113 1.076332 CCGTCTTCACCGTTGGATTC 58.924 55.000 0.00 0.00 0.00 2.52
113 114 0.682852 TCCGTCTTCACCGTTGGATT 59.317 50.000 0.00 0.00 0.00 3.01
114 115 0.902531 ATCCGTCTTCACCGTTGGAT 59.097 50.000 0.00 0.00 0.00 3.41
115 116 0.245539 GATCCGTCTTCACCGTTGGA 59.754 55.000 0.00 0.00 0.00 3.53
116 117 0.246635 AGATCCGTCTTCACCGTTGG 59.753 55.000 0.00 0.00 0.00 3.77
117 118 1.067846 TCAGATCCGTCTTCACCGTTG 60.068 52.381 0.00 0.00 30.42 4.10
118 119 1.254026 TCAGATCCGTCTTCACCGTT 58.746 50.000 0.00 0.00 30.42 4.44
119 120 1.254026 TTCAGATCCGTCTTCACCGT 58.746 50.000 0.00 0.00 30.42 4.83
120 121 2.586258 ATTCAGATCCGTCTTCACCG 57.414 50.000 0.00 0.00 30.42 4.94
121 122 3.198872 GGAATTCAGATCCGTCTTCACC 58.801 50.000 7.93 0.00 30.42 4.02
130 131 1.927174 CACACGTCGGAATTCAGATCC 59.073 52.381 11.54 0.00 0.00 3.36
131 132 1.927174 CCACACGTCGGAATTCAGATC 59.073 52.381 11.54 5.13 0.00 2.75
132 133 1.275291 ACCACACGTCGGAATTCAGAT 59.725 47.619 11.54 0.00 0.00 2.90
133 134 0.677288 ACCACACGTCGGAATTCAGA 59.323 50.000 7.93 5.92 0.00 3.27
134 135 1.508632 AACCACACGTCGGAATTCAG 58.491 50.000 7.93 3.12 0.00 3.02
135 136 1.956297 AAACCACACGTCGGAATTCA 58.044 45.000 7.93 0.00 0.00 2.57
136 137 4.471157 TTTAAACCACACGTCGGAATTC 57.529 40.909 7.54 0.00 0.00 2.17
137 138 4.575645 TCTTTTAAACCACACGTCGGAATT 59.424 37.500 7.54 4.96 0.00 2.17
138 139 4.128643 TCTTTTAAACCACACGTCGGAAT 58.871 39.130 7.54 0.00 0.00 3.01
139 140 3.529533 TCTTTTAAACCACACGTCGGAA 58.470 40.909 7.54 0.00 0.00 4.30
140 141 3.176552 TCTTTTAAACCACACGTCGGA 57.823 42.857 7.54 0.00 0.00 4.55
141 142 4.433283 CGTATCTTTTAAACCACACGTCGG 60.433 45.833 0.00 0.00 0.00 4.79
142 143 4.382457 TCGTATCTTTTAAACCACACGTCG 59.618 41.667 9.87 0.00 0.00 5.12
143 144 5.403466 AGTCGTATCTTTTAAACCACACGTC 59.597 40.000 9.87 6.27 0.00 4.34
144 145 5.291971 AGTCGTATCTTTTAAACCACACGT 58.708 37.500 9.87 0.00 0.00 4.49
145 146 5.834239 AGTCGTATCTTTTAAACCACACG 57.166 39.130 0.00 0.00 0.00 4.49
146 147 8.845942 AAAAAGTCGTATCTTTTAAACCACAC 57.154 30.769 12.84 0.00 43.82 3.82
160 161 8.974408 GCCACTTCAATTTTTAAAAAGTCGTAT 58.026 29.630 17.72 0.00 0.00 3.06
161 162 7.435784 GGCCACTTCAATTTTTAAAAAGTCGTA 59.564 33.333 17.72 2.21 0.00 3.43
162 163 6.256975 GGCCACTTCAATTTTTAAAAAGTCGT 59.743 34.615 17.72 9.56 0.00 4.34
163 164 6.256757 TGGCCACTTCAATTTTTAAAAAGTCG 59.743 34.615 17.72 10.58 0.00 4.18
164 165 7.546778 TGGCCACTTCAATTTTTAAAAAGTC 57.453 32.000 17.72 5.05 0.00 3.01
165 166 7.929941 TTGGCCACTTCAATTTTTAAAAAGT 57.070 28.000 17.72 13.04 0.00 2.66
166 167 9.800433 ATTTTGGCCACTTCAATTTTTAAAAAG 57.200 25.926 17.72 7.18 0.00 2.27
172 173 8.911965 ACATTTATTTTGGCCACTTCAATTTTT 58.088 25.926 3.88 0.00 0.00 1.94
173 174 8.351461 CACATTTATTTTGGCCACTTCAATTTT 58.649 29.630 3.88 0.00 0.00 1.82
174 175 7.521910 GCACATTTATTTTGGCCACTTCAATTT 60.522 33.333 3.88 0.00 0.00 1.82
175 176 6.072563 GCACATTTATTTTGGCCACTTCAATT 60.073 34.615 3.88 0.00 0.00 2.32
176 177 5.412286 GCACATTTATTTTGGCCACTTCAAT 59.588 36.000 3.88 4.31 0.00 2.57
177 178 4.754114 GCACATTTATTTTGGCCACTTCAA 59.246 37.500 3.88 0.00 0.00 2.69
178 179 4.314121 GCACATTTATTTTGGCCACTTCA 58.686 39.130 3.88 0.00 0.00 3.02
179 180 3.367630 CGCACATTTATTTTGGCCACTTC 59.632 43.478 3.88 0.00 0.00 3.01
180 181 3.244044 ACGCACATTTATTTTGGCCACTT 60.244 39.130 3.88 0.00 0.00 3.16
181 182 2.298729 ACGCACATTTATTTTGGCCACT 59.701 40.909 3.88 0.00 0.00 4.00
182 183 2.411409 CACGCACATTTATTTTGGCCAC 59.589 45.455 3.88 0.00 0.00 5.01
183 184 2.297315 TCACGCACATTTATTTTGGCCA 59.703 40.909 0.00 0.00 0.00 5.36
184 185 2.953020 TCACGCACATTTATTTTGGCC 58.047 42.857 0.00 0.00 0.00 5.36
185 186 4.864247 AGATTCACGCACATTTATTTTGGC 59.136 37.500 0.00 0.00 0.00 4.52
186 187 5.863397 ACAGATTCACGCACATTTATTTTGG 59.137 36.000 0.00 0.00 0.00 3.28
187 188 6.932901 ACAGATTCACGCACATTTATTTTG 57.067 33.333 0.00 0.00 0.00 2.44
188 189 7.945033 AAACAGATTCACGCACATTTATTTT 57.055 28.000 0.00 0.00 0.00 1.82
189 190 7.651304 TGAAAACAGATTCACGCACATTTATTT 59.349 29.630 0.00 0.00 34.50 1.40
190 191 7.144661 TGAAAACAGATTCACGCACATTTATT 58.855 30.769 0.00 0.00 34.50 1.40
191 192 6.676950 TGAAAACAGATTCACGCACATTTAT 58.323 32.000 0.00 0.00 34.50 1.40
192 193 6.066054 TGAAAACAGATTCACGCACATTTA 57.934 33.333 0.00 0.00 34.50 1.40
193 194 4.930963 TGAAAACAGATTCACGCACATTT 58.069 34.783 0.00 0.00 34.50 2.32
194 195 4.539870 CTGAAAACAGATTCACGCACATT 58.460 39.130 0.00 0.00 35.55 2.71
195 196 3.058016 CCTGAAAACAGATTCACGCACAT 60.058 43.478 0.00 0.00 35.55 3.21
196 197 2.290367 CCTGAAAACAGATTCACGCACA 59.710 45.455 0.00 0.00 35.55 4.57
197 198 2.548057 TCCTGAAAACAGATTCACGCAC 59.452 45.455 0.00 0.00 35.55 5.34
198 199 2.548057 GTCCTGAAAACAGATTCACGCA 59.452 45.455 0.00 0.00 35.55 5.24
199 200 2.808543 AGTCCTGAAAACAGATTCACGC 59.191 45.455 0.00 0.00 35.55 5.34
200 201 5.230942 ACTAGTCCTGAAAACAGATTCACG 58.769 41.667 0.00 0.00 35.55 4.35
201 202 5.639931 GGACTAGTCCTGAAAACAGATTCAC 59.360 44.000 31.12 1.68 46.16 3.18
202 203 5.794894 GGACTAGTCCTGAAAACAGATTCA 58.205 41.667 31.12 0.00 46.16 2.57
214 215 7.843719 ACATTAAATGTGTACGGACTAGTCCTG 60.844 40.741 33.70 28.17 44.02 3.86
215 216 6.154021 ACATTAAATGTGTACGGACTAGTCCT 59.846 38.462 33.70 23.95 44.02 3.85
216 217 6.335777 ACATTAAATGTGTACGGACTAGTCC 58.664 40.000 29.18 29.18 43.01 3.85
217 218 7.823149 AACATTAAATGTGTACGGACTAGTC 57.177 36.000 14.87 14.87 44.07 2.59
218 219 9.143631 GTTAACATTAAATGTGTACGGACTAGT 57.856 33.333 0.00 0.00 44.07 2.57
219 220 9.142515 TGTTAACATTAAATGTGTACGGACTAG 57.857 33.333 3.59 0.00 44.07 2.57
220 221 9.486497 TTGTTAACATTAAATGTGTACGGACTA 57.514 29.630 9.56 0.00 44.07 2.59
221 222 7.966246 TGTTAACATTAAATGTGTACGGACT 57.034 32.000 3.59 0.00 44.07 3.85
222 223 9.448294 TTTTGTTAACATTAAATGTGTACGGAC 57.552 29.630 9.56 0.00 44.07 4.79
238 239 9.278978 TCAGCTAGTGAATGTATTTTGTTAACA 57.721 29.630 3.59 3.59 29.64 2.41
239 240 9.543018 GTCAGCTAGTGAATGTATTTTGTTAAC 57.457 33.333 0.00 0.00 36.74 2.01
240 241 9.278978 TGTCAGCTAGTGAATGTATTTTGTTAA 57.721 29.630 0.00 0.00 36.74 2.01
241 242 8.840833 TGTCAGCTAGTGAATGTATTTTGTTA 57.159 30.769 0.00 0.00 36.74 2.41
242 243 7.744087 TGTCAGCTAGTGAATGTATTTTGTT 57.256 32.000 0.00 0.00 36.74 2.83
243 244 7.744087 TTGTCAGCTAGTGAATGTATTTTGT 57.256 32.000 0.00 0.00 36.74 2.83
244 245 9.462174 TTTTTGTCAGCTAGTGAATGTATTTTG 57.538 29.630 0.00 0.00 36.74 2.44
268 269 7.309194 GGGCTGATTACTTACATGTGTCTTTTT 60.309 37.037 9.11 0.00 0.00 1.94
269 270 6.151144 GGGCTGATTACTTACATGTGTCTTTT 59.849 38.462 9.11 0.00 0.00 2.27
270 271 5.648092 GGGCTGATTACTTACATGTGTCTTT 59.352 40.000 9.11 0.00 0.00 2.52
271 272 5.186198 GGGCTGATTACTTACATGTGTCTT 58.814 41.667 9.11 0.00 0.00 3.01
272 273 4.680708 CGGGCTGATTACTTACATGTGTCT 60.681 45.833 9.11 0.00 0.00 3.41
273 274 3.555956 CGGGCTGATTACTTACATGTGTC 59.444 47.826 9.11 0.00 0.00 3.67
274 275 3.531538 CGGGCTGATTACTTACATGTGT 58.468 45.455 9.11 0.73 0.00 3.72
275 276 2.872245 CCGGGCTGATTACTTACATGTG 59.128 50.000 9.11 0.00 0.00 3.21
276 277 2.745152 GCCGGGCTGATTACTTACATGT 60.745 50.000 12.87 2.69 0.00 3.21
277 278 1.873591 GCCGGGCTGATTACTTACATG 59.126 52.381 12.87 0.00 0.00 3.21
278 279 1.202770 GGCCGGGCTGATTACTTACAT 60.203 52.381 22.87 0.00 0.00 2.29
279 280 0.179468 GGCCGGGCTGATTACTTACA 59.821 55.000 22.87 0.00 0.00 2.41
280 281 0.878961 CGGCCGGGCTGATTACTTAC 60.879 60.000 27.04 0.00 37.02 2.34
281 282 1.444250 CGGCCGGGCTGATTACTTA 59.556 57.895 27.04 0.00 37.02 2.24
282 283 2.189521 CGGCCGGGCTGATTACTT 59.810 61.111 27.04 0.00 37.02 2.24
283 284 4.547367 GCGGCCGGGCTGATTACT 62.547 66.667 31.51 0.00 37.02 2.24
303 304 1.196127 CGCCCACTTTTTCGTAGGAAC 59.804 52.381 0.00 0.00 0.00 3.62
304 305 1.202675 ACGCCCACTTTTTCGTAGGAA 60.203 47.619 0.00 0.00 33.02 3.36
305 306 0.393820 ACGCCCACTTTTTCGTAGGA 59.606 50.000 0.00 0.00 33.02 2.94
306 307 0.515564 CACGCCCACTTTTTCGTAGG 59.484 55.000 0.00 0.00 33.51 3.18
307 308 0.110373 GCACGCCCACTTTTTCGTAG 60.110 55.000 0.00 0.00 33.51 3.51
308 309 0.814410 TGCACGCCCACTTTTTCGTA 60.814 50.000 0.00 0.00 33.51 3.43
309 310 2.115911 TGCACGCCCACTTTTTCGT 61.116 52.632 0.00 0.00 35.35 3.85
310 311 1.657181 GTGCACGCCCACTTTTTCG 60.657 57.895 0.00 0.00 33.02 3.46
311 312 1.733526 AGTGCACGCCCACTTTTTC 59.266 52.632 12.01 0.00 43.19 2.29
312 313 3.933515 AGTGCACGCCCACTTTTT 58.066 50.000 12.01 0.00 43.19 1.94
317 318 0.948678 TCTTAAAAGTGCACGCCCAC 59.051 50.000 12.01 0.00 35.98 4.61
318 319 1.904287 ATCTTAAAAGTGCACGCCCA 58.096 45.000 12.01 0.00 0.00 5.36
319 320 3.242518 GAAATCTTAAAAGTGCACGCCC 58.757 45.455 12.01 0.00 0.00 6.13
320 321 3.896122 TGAAATCTTAAAAGTGCACGCC 58.104 40.909 12.01 0.00 0.00 5.68
321 322 3.914364 CCTGAAATCTTAAAAGTGCACGC 59.086 43.478 12.01 0.00 0.00 5.34
322 323 5.108385 ACCTGAAATCTTAAAAGTGCACG 57.892 39.130 12.01 0.00 0.00 5.34
331 332 9.997482 GCGAAAACAATATACCTGAAATCTTAA 57.003 29.630 0.00 0.00 0.00 1.85
332 333 8.617809 GGCGAAAACAATATACCTGAAATCTTA 58.382 33.333 0.00 0.00 0.00 2.10
333 334 7.416326 GGGCGAAAACAATATACCTGAAATCTT 60.416 37.037 0.00 0.00 0.00 2.40
334 335 6.039382 GGGCGAAAACAATATACCTGAAATCT 59.961 38.462 0.00 0.00 0.00 2.40
335 336 6.206498 GGGCGAAAACAATATACCTGAAATC 58.794 40.000 0.00 0.00 0.00 2.17
336 337 5.220970 CGGGCGAAAACAATATACCTGAAAT 60.221 40.000 0.00 0.00 0.00 2.17
337 338 4.095185 CGGGCGAAAACAATATACCTGAAA 59.905 41.667 0.00 0.00 0.00 2.69
338 339 3.623960 CGGGCGAAAACAATATACCTGAA 59.376 43.478 0.00 0.00 0.00 3.02
339 340 3.118702 TCGGGCGAAAACAATATACCTGA 60.119 43.478 0.00 0.00 0.00 3.86
340 341 3.001939 GTCGGGCGAAAACAATATACCTG 59.998 47.826 0.00 0.00 0.00 4.00
341 342 3.200483 GTCGGGCGAAAACAATATACCT 58.800 45.455 0.00 0.00 0.00 3.08
342 343 2.033492 CGTCGGGCGAAAACAATATACC 60.033 50.000 0.00 0.00 44.77 2.73
343 344 3.228878 CGTCGGGCGAAAACAATATAC 57.771 47.619 0.00 0.00 44.77 1.47
383 384 0.451792 CTTCTTGAAACGCAGCGAGC 60.452 55.000 24.65 10.52 40.87 5.03
386 387 1.462541 GCTACTTCTTGAAACGCAGCG 60.463 52.381 14.82 14.82 0.00 5.18
390 391 5.096954 AGAAAAGCTACTTCTTGAAACGC 57.903 39.130 5.37 0.00 28.46 4.84
394 395 7.230712 CCCCTAAAAGAAAAGCTACTTCTTGAA 59.769 37.037 19.28 12.07 41.24 2.69
403 404 5.074804 GGAACACCCCTAAAAGAAAAGCTA 58.925 41.667 0.00 0.00 0.00 3.32
421 422 7.506590 GCACTAGCTGCTTTTGAATGGAACA 62.507 44.000 7.79 0.00 43.45 3.18
425 426 2.730090 CGCACTAGCTGCTTTTGAATGG 60.730 50.000 7.79 0.00 44.64 3.16
428 429 1.531149 GTCGCACTAGCTGCTTTTGAA 59.469 47.619 7.79 0.00 44.64 2.69
429 430 1.148310 GTCGCACTAGCTGCTTTTGA 58.852 50.000 7.79 0.00 44.64 2.69
430 431 0.179240 CGTCGCACTAGCTGCTTTTG 60.179 55.000 7.79 6.65 44.64 2.44
431 432 0.319555 TCGTCGCACTAGCTGCTTTT 60.320 50.000 7.79 0.00 44.64 2.27
432 433 0.108615 ATCGTCGCACTAGCTGCTTT 60.109 50.000 7.79 0.00 44.64 3.51
445 454 1.596260 TCTTAGTCGTAGGCATCGTCG 59.404 52.381 0.00 0.00 0.00 5.12
455 464 2.584236 GCCCTGGATCTCTTAGTCGTA 58.416 52.381 0.00 0.00 0.00 3.43
459 468 1.698506 CTCGCCCTGGATCTCTTAGT 58.301 55.000 0.00 0.00 0.00 2.24
504 519 2.357517 CGTCTTGGCTGCTTCCGT 60.358 61.111 0.00 0.00 0.00 4.69
638 653 2.584608 GCGGCTTCTCTGGCCTTA 59.415 61.111 3.32 0.00 46.73 2.69
665 680 1.684049 CTCCTCCTCTGGCCGACTT 60.684 63.158 0.00 0.00 0.00 3.01
789 804 2.038295 AGCTCTCACTGGTTTGAAGGAG 59.962 50.000 0.00 0.00 0.00 3.69
839 858 7.875971 ACAAACTTTGTGAAAAGCTATAGAGG 58.124 34.615 6.35 0.00 43.48 3.69
921 994 1.798626 TCACAGGGATAGATGCTGCT 58.201 50.000 0.00 0.00 0.00 4.24
936 1009 2.235155 AGGGTATGTGTAACGCATCACA 59.765 45.455 8.99 8.99 46.23 3.58
938 1011 2.899976 CAGGGTATGTGTAACGCATCA 58.100 47.619 0.00 0.00 42.39 3.07
939 1012 1.597663 GCAGGGTATGTGTAACGCATC 59.402 52.381 0.00 0.00 42.39 3.91
990 1063 0.897621 TGACCGACATGATCTGCAGT 59.102 50.000 14.67 0.42 0.00 4.40
999 1072 0.374758 CCGCAATCTTGACCGACATG 59.625 55.000 0.00 0.00 0.00 3.21
1014 1095 2.342650 GCCCTCTTTGATTGCCGCA 61.343 57.895 0.00 0.00 0.00 5.69
1071 1152 1.132640 GTGATCCAAGTTGTCGCGC 59.867 57.895 0.00 0.00 0.00 6.86
1163 1244 3.989056 ACCTGGAAAGGAAAACAAAGGA 58.011 40.909 0.00 0.00 0.00 3.36
1167 1248 2.169561 GGCAACCTGGAAAGGAAAACAA 59.830 45.455 0.00 0.00 0.00 2.83
1168 1249 1.760029 GGCAACCTGGAAAGGAAAACA 59.240 47.619 0.00 0.00 0.00 2.83
1182 1263 2.887152 ACAATTGACAGAGAAGGCAACC 59.113 45.455 13.59 0.00 37.17 3.77
1211 1346 6.648725 ATGCTCTGTTTCGTCAATAGTAAC 57.351 37.500 0.00 0.00 0.00 2.50
1222 1357 6.893958 AGTCAGTAATTATGCTCTGTTTCG 57.106 37.500 0.00 0.00 0.00 3.46
1227 1362 5.748630 TGCGTAAGTCAGTAATTATGCTCTG 59.251 40.000 10.10 0.00 42.05 3.35
1250 1823 2.246841 TGCATGAGCGGAACAACTG 58.753 52.632 0.00 0.00 46.23 3.16
1305 1878 1.577328 GGTCCACTGACACGGCAATG 61.577 60.000 0.00 0.00 43.65 2.82
1366 1939 2.431057 TCAGGTCTTTATCCTCGGCTTC 59.569 50.000 0.00 0.00 32.37 3.86
1402 1975 1.157870 AAACGTCCGGTTCTGTGCAG 61.158 55.000 0.00 0.00 38.08 4.41
1425 1998 0.454600 TGCTAGAGTAAAGACCGCCG 59.545 55.000 0.00 0.00 0.00 6.46
1426 1999 1.202428 CCTGCTAGAGTAAAGACCGCC 60.202 57.143 0.00 0.00 0.00 6.13
1438 2011 1.536073 AACGTGCTGAGCCTGCTAGA 61.536 55.000 0.23 0.00 0.00 2.43
1470 2043 1.600107 GGAGCGGGTAACATGGTCA 59.400 57.895 0.00 0.00 41.21 4.02
1505 2078 7.040271 GCCAAGACCCATAAGTTAGTTTTACAA 60.040 37.037 0.00 0.00 0.00 2.41
1519 2092 1.301623 CGGTTGGCCAAGACCCATA 59.698 57.895 21.21 0.00 32.14 2.74
1527 2100 2.907917 CCGAAACCGGTTGGCCAA 60.908 61.111 23.08 16.05 42.05 4.52
1640 2213 0.179187 ACGACGTGAGAGCTTGATCG 60.179 55.000 0.00 0.00 0.00 3.69
1653 2226 2.036217 TCCAATAGAAACCACACGACGT 59.964 45.455 0.00 0.00 0.00 4.34
1669 2242 6.153000 ACGTTAAGAGACTCTACATGTCCAAT 59.847 38.462 5.14 0.00 35.21 3.16
1689 2262 3.991773 GACCTGCAGTGACATAAACGTTA 59.008 43.478 13.81 0.00 0.00 3.18
1782 2355 0.906756 AGCCAAGGCAGAGCTCACTA 60.907 55.000 17.77 0.00 44.88 2.74
1858 2431 0.898326 AATGGTGTTTCCTTCCCGCC 60.898 55.000 0.00 0.00 37.07 6.13
1859 2432 1.828979 TAATGGTGTTTCCTTCCCGC 58.171 50.000 0.00 0.00 37.07 6.13
1860 2433 4.461081 TCAAATAATGGTGTTTCCTTCCCG 59.539 41.667 0.00 0.00 37.07 5.14
1861 2434 5.993748 TCAAATAATGGTGTTTCCTTCCC 57.006 39.130 0.00 0.00 37.07 3.97
1862 2435 6.163476 GGTTCAAATAATGGTGTTTCCTTCC 58.837 40.000 0.00 0.00 37.07 3.46
1935 2550 0.400213 ACACCACCACCATACACCAG 59.600 55.000 0.00 0.00 0.00 4.00
1992 2769 8.792830 ACAAGCAACAACACTAGAACATATAT 57.207 30.769 0.00 0.00 0.00 0.86
2082 2864 5.049680 TGAGCCAAAATGAGTTAGTCGAAAC 60.050 40.000 0.00 0.00 0.00 2.78
2083 2865 5.060506 TGAGCCAAAATGAGTTAGTCGAAA 58.939 37.500 0.00 0.00 0.00 3.46
2090 2872 4.385825 ACGTCTTGAGCCAAAATGAGTTA 58.614 39.130 0.00 0.00 0.00 2.24
2147 2929 4.360405 GCCGGGCTCCAAAAGGGA 62.360 66.667 12.87 0.00 45.89 4.20
2149 2931 4.366684 AGGCCGGGCTCCAAAAGG 62.367 66.667 27.45 0.00 0.00 3.11
2150 2932 2.751837 GAGGCCGGGCTCCAAAAG 60.752 66.667 40.54 0.00 0.00 2.27
2156 2938 3.764160 CTCATTGGAGGCCGGGCTC 62.764 68.421 41.96 41.96 37.51 4.70
2157 2939 3.801997 CTCATTGGAGGCCGGGCT 61.802 66.667 33.40 33.40 37.51 5.19
2158 2940 4.115199 ACTCATTGGAGGCCGGGC 62.115 66.667 22.67 22.67 45.81 6.13
2159 2941 2.190578 GACTCATTGGAGGCCGGG 59.809 66.667 2.18 0.00 43.92 5.73
2164 2946 2.307098 AGTTTGGAGGACTCATTGGAGG 59.693 50.000 1.32 0.00 45.81 4.30
2165 2947 3.604582 GAGTTTGGAGGACTCATTGGAG 58.395 50.000 1.32 0.00 46.96 3.86
2166 2948 2.028112 CGAGTTTGGAGGACTCATTGGA 60.028 50.000 1.32 0.00 42.85 3.53
2167 2949 2.028112 TCGAGTTTGGAGGACTCATTGG 60.028 50.000 1.32 0.00 42.85 3.16
2168 2950 3.319137 TCGAGTTTGGAGGACTCATTG 57.681 47.619 1.32 0.00 42.85 2.82
2169 2951 4.351874 TTTCGAGTTTGGAGGACTCATT 57.648 40.909 1.32 0.00 42.85 2.57
2170 2952 4.559862 ATTTCGAGTTTGGAGGACTCAT 57.440 40.909 1.32 0.00 42.85 2.90
2171 2953 4.202315 TGAATTTCGAGTTTGGAGGACTCA 60.202 41.667 1.32 0.00 42.85 3.41
2172 2954 4.315803 TGAATTTCGAGTTTGGAGGACTC 58.684 43.478 0.00 0.00 40.05 3.36
2173 2955 4.351874 TGAATTTCGAGTTTGGAGGACT 57.648 40.909 0.00 0.00 0.00 3.85
2174 2956 6.927294 ATATGAATTTCGAGTTTGGAGGAC 57.073 37.500 0.00 0.00 0.00 3.85
2175 2957 7.938140 AAATATGAATTTCGAGTTTGGAGGA 57.062 32.000 0.00 0.00 28.88 3.71
2239 3021 7.449704 AGTTGATATCAGAGCCTCTTTGTTTTT 59.550 33.333 5.39 0.00 0.00 1.94
2240 3022 6.944862 AGTTGATATCAGAGCCTCTTTGTTTT 59.055 34.615 5.39 0.00 0.00 2.43
2241 3023 6.479884 AGTTGATATCAGAGCCTCTTTGTTT 58.520 36.000 5.39 0.00 0.00 2.83
2242 3024 6.059787 AGTTGATATCAGAGCCTCTTTGTT 57.940 37.500 5.39 0.00 0.00 2.83
2243 3025 5.690464 AGTTGATATCAGAGCCTCTTTGT 57.310 39.130 5.39 0.00 0.00 2.83
2244 3026 5.879223 ACAAGTTGATATCAGAGCCTCTTTG 59.121 40.000 10.54 5.97 0.00 2.77
2245 3027 6.059787 ACAAGTTGATATCAGAGCCTCTTT 57.940 37.500 10.54 0.00 0.00 2.52
2246 3028 5.188555 TGACAAGTTGATATCAGAGCCTCTT 59.811 40.000 10.54 3.31 0.00 2.85
2247 3029 4.713814 TGACAAGTTGATATCAGAGCCTCT 59.286 41.667 10.54 0.00 0.00 3.69
2260 3043 2.552599 TATTGGGCGTGACAAGTTGA 57.447 45.000 10.54 0.00 0.00 3.18
2297 3080 1.410004 TGGTGTGACCTTCGAGTCTT 58.590 50.000 6.40 0.00 39.58 3.01
2311 3094 5.975988 ATATGTGGTTCTATCCTTGGTGT 57.024 39.130 0.00 0.00 0.00 4.16
2328 3111 4.626604 CCATGCAAAAGCGTTTCAATATGT 59.373 37.500 0.00 0.00 0.00 2.29
2349 3132 9.283768 GTAATGTTGATGTAATGATATCCACCA 57.716 33.333 0.00 0.00 0.00 4.17
2386 3169 8.613060 CATTGTATGCCTCTTGTATGTATCTT 57.387 34.615 0.00 0.00 0.00 2.40
2503 3286 0.747255 GTTCTAGATCGGCAGCCTGA 59.253 55.000 10.54 9.18 0.00 3.86
2515 3298 5.418692 TTGATCAGGGGATAGGTTCTAGA 57.581 43.478 0.00 0.00 32.67 2.43
2540 3323 4.336433 TGTTTTGGAGTTCTTCTGCTTCTG 59.664 41.667 0.00 0.00 35.48 3.02
2601 3391 1.668751 ACAACAACAGTTGCAGGTACG 59.331 47.619 13.56 0.00 45.01 3.67
2742 3532 5.049405 GCTCTTATTTGCGTATGTTAGCCAT 60.049 40.000 0.00 0.00 37.58 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.