Multiple sequence alignment - TraesCS7B01G092400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G092400 chr7B 100.000 7251 0 0 1 7251 105841755 105834505 0.000000e+00 13391.0
1 TraesCS7B01G092400 chr7A 94.652 4787 187 21 1838 6590 142652375 142647624 0.000000e+00 7358.0
2 TraesCS7B01G092400 chr7A 91.971 1121 40 19 827 1940 142653311 142652234 0.000000e+00 1526.0
3 TraesCS7B01G092400 chr7A 87.817 829 83 13 9 830 142656455 142655638 0.000000e+00 955.0
4 TraesCS7B01G092400 chr7A 85.635 362 23 7 6878 7233 142647317 142646979 3.220000e-93 353.0
5 TraesCS7B01G092400 chr7A 82.222 315 34 12 2540 2845 142651379 142651078 1.210000e-62 252.0
6 TraesCS7B01G092400 chr7A 86.857 175 6 7 6690 6847 142647589 142647415 5.780000e-41 180.0
7 TraesCS7B01G092400 chr7A 94.565 92 5 0 6599 6690 16740428 16740519 7.580000e-30 143.0
8 TraesCS7B01G092400 chr7D 94.403 2537 94 18 4082 6590 140770661 140768145 0.000000e+00 3855.0
9 TraesCS7B01G092400 chr7D 95.151 2186 75 20 1877 4052 140772826 140770662 0.000000e+00 3421.0
10 TraesCS7B01G092400 chr7D 90.750 1773 106 33 205 1935 140774450 140772694 0.000000e+00 2313.0
11 TraesCS7B01G092400 chr7D 90.462 346 21 8 6914 7250 140767831 140767489 5.160000e-121 446.0
12 TraesCS7B01G092400 chr7D 89.908 218 16 5 1 215 140775008 140774794 7.170000e-70 276.0
13 TraesCS7B01G092400 chr7D 85.795 176 7 9 6690 6847 140768110 140767935 3.480000e-38 171.0
14 TraesCS7B01G092400 chr7D 100.000 29 0 0 1666 1694 17333239 17333267 4.000000e-03 54.7
15 TraesCS7B01G092400 chr3B 93.694 111 6 1 7141 7251 24522788 24522679 1.620000e-36 165.0
16 TraesCS7B01G092400 chr5A 91.964 112 7 2 7141 7251 533379740 533379850 9.740000e-34 156.0
17 TraesCS7B01G092400 chr5A 91.743 109 8 1 7143 7251 645735896 645735789 4.530000e-32 150.0
18 TraesCS7B01G092400 chrUn 89.916 119 11 1 7133 7251 83455444 83455327 1.260000e-32 152.0
19 TraesCS7B01G092400 chrUn 94.505 91 5 0 6600 6690 171047857 171047947 2.730000e-29 141.0
20 TraesCS7B01G092400 chrUn 94.505 91 5 0 6600 6690 189396612 189396702 2.730000e-29 141.0
21 TraesCS7B01G092400 chrUn 96.471 85 3 0 6606 6690 399419401 399419317 2.730000e-29 141.0
22 TraesCS7B01G092400 chrUn 96.471 85 3 0 6606 6690 452446618 452446534 2.730000e-29 141.0
23 TraesCS7B01G092400 chr3A 91.071 112 8 2 7141 7251 114774078 114773968 4.530000e-32 150.0
24 TraesCS7B01G092400 chr4D 90.991 111 9 1 7141 7251 43651430 43651539 1.630000e-31 148.0
25 TraesCS7B01G092400 chr4D 82.738 168 20 7 6287 6450 402529387 402529549 2.730000e-29 141.0
26 TraesCS7B01G092400 chr4B 90.991 111 9 1 7141 7251 648556518 648556627 1.630000e-31 148.0
27 TraesCS7B01G092400 chr6D 94.505 91 5 0 6600 6690 458902313 458902403 2.730000e-29 141.0
28 TraesCS7B01G092400 chr2B 93.684 95 5 1 6600 6694 357648675 357648768 2.730000e-29 141.0
29 TraesCS7B01G092400 chr1D 96.471 85 3 0 6606 6690 43232581 43232497 2.730000e-29 141.0
30 TraesCS7B01G092400 chr1D 94.505 91 5 0 6600 6690 185773525 185773615 2.730000e-29 141.0
31 TraesCS7B01G092400 chr1D 100.000 29 0 0 1666 1694 474347311 474347339 4.000000e-03 54.7
32 TraesCS7B01G092400 chr4A 80.690 145 18 6 6287 6428 60018917 60019054 3.580000e-18 104.0
33 TraesCS7B01G092400 chr3D 92.500 40 2 1 1660 1698 317745152 317745113 1.000000e-03 56.5
34 TraesCS7B01G092400 chr3D 100.000 29 0 0 1666 1694 985253 985225 4.000000e-03 54.7
35 TraesCS7B01G092400 chr5B 100.000 29 0 0 1666 1694 473616730 473616702 4.000000e-03 54.7
36 TraesCS7B01G092400 chr2A 100.000 28 0 0 1668 1695 548414552 548414525 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G092400 chr7B 105834505 105841755 7250 True 13391.000000 13391 100.000000 1 7251 1 chr7B.!!$R1 7250
1 TraesCS7B01G092400 chr7A 142646979 142656455 9476 True 1770.666667 7358 88.192333 9 7233 6 chr7A.!!$R1 7224
2 TraesCS7B01G092400 chr7D 140767489 140775008 7519 True 1747.000000 3855 91.078167 1 7250 6 chr7D.!!$R1 7249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 668 0.743097 GTCCATGAGGCAAATGAGGC 59.257 55.000 0.00 0.0 33.74 4.70 F
1074 3761 1.134907 GTCTTCGCGAATCCCAGGTAA 60.135 52.381 23.67 0.0 0.00 2.85 F
1893 4596 0.123266 AAGAAGGGGATGGGGAAGGA 59.877 55.000 0.00 0.0 0.00 3.36 F
1894 4597 0.327964 AGAAGGGGATGGGGAAGGAG 60.328 60.000 0.00 0.0 0.00 3.69 F
3795 6521 0.611896 AACAAGCTTATGCCGCCCTT 60.612 50.000 0.00 0.0 40.80 3.95 F
4187 6915 0.099436 ATGCGAAAATGAAGAGGCGC 59.901 50.000 0.00 0.0 44.15 6.53 F
5208 7937 0.251787 AACACATTCCTCTTGCCCCC 60.252 55.000 0.00 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 3877 0.036010 ACATCTGGAAGGGCAGAACG 60.036 55.000 0.00 0.0 0.00 3.95 R
1913 4616 0.123266 TCCTTCCCCATCCCCTTCTT 59.877 55.000 0.00 0.0 0.00 2.52 R
3807 6533 1.402787 AACAAGTTGGGCTTCACAGG 58.597 50.000 7.96 0.0 34.69 4.00 R
3810 6536 4.399303 AGCATATAACAAGTTGGGCTTCAC 59.601 41.667 7.96 0.0 34.69 3.18 R
5110 7839 0.178947 AAAAATTGGCCAGGTCGGGA 60.179 50.000 5.11 0.0 34.06 5.14 R
5588 8345 1.126329 ATCCTCCAGGCGAGCATCAT 61.126 55.000 0.00 0.0 37.27 2.45 R
6632 9390 0.036388 GAGTCAGGGCCGATTGACAA 60.036 55.000 25.93 0.0 44.72 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 156 1.763770 CCCTCTTGCTCAACCTGGT 59.236 57.895 0.00 0.00 0.00 4.00
224 585 5.518865 ACATGCCCTTATATTGTCCAACTT 58.481 37.500 0.00 0.00 0.00 2.66
277 638 1.494721 AGACCACCACCATTGACAACT 59.505 47.619 0.00 0.00 0.00 3.16
307 668 0.743097 GTCCATGAGGCAAATGAGGC 59.257 55.000 0.00 0.00 33.74 4.70
331 692 9.476202 GGCTTGTGTGAACTCTTTAATTATTTT 57.524 29.630 0.00 0.00 0.00 1.82
493 854 6.727231 TGGAACAATTAGTCTACCTAAGTCCA 59.273 38.462 0.00 0.00 38.99 4.02
517 878 1.272147 GCAAAGGAGGGGAGTGTGAAT 60.272 52.381 0.00 0.00 0.00 2.57
518 879 2.440409 CAAAGGAGGGGAGTGTGAATG 58.560 52.381 0.00 0.00 0.00 2.67
523 884 1.815003 GAGGGGAGTGTGAATGCTTTG 59.185 52.381 0.00 0.00 0.00 2.77
549 910 3.363627 CTTAGAACCCTAACCTCCGTCT 58.636 50.000 0.00 0.00 31.94 4.18
569 930 5.006941 CGTCTTTCGGAGGTTTTTACAAAGA 59.993 40.000 0.00 0.00 35.71 2.52
586 947 9.647797 TTTACAAAGATGAATAGAGAGCGTTAA 57.352 29.630 0.00 0.00 0.00 2.01
597 959 3.746492 AGAGAGCGTTAACAATGTGAACC 59.254 43.478 7.97 1.75 0.00 3.62
600 962 2.552315 AGCGTTAACAATGTGAACCTGG 59.448 45.455 7.97 0.00 0.00 4.45
607 969 4.273148 ACAATGTGAACCTGGTAGTCTC 57.727 45.455 0.00 0.00 0.00 3.36
619 981 5.127845 ACCTGGTAGTCTCATTGTACATGAG 59.872 44.000 20.42 20.42 45.08 2.90
620 982 5.127845 CCTGGTAGTCTCATTGTACATGAGT 59.872 44.000 23.13 14.16 44.30 3.41
622 984 5.105351 TGGTAGTCTCATTGTACATGAGTGG 60.105 44.000 23.13 9.32 44.30 4.00
623 985 5.127194 GGTAGTCTCATTGTACATGAGTGGA 59.873 44.000 23.13 13.29 44.30 4.02
624 986 5.946942 AGTCTCATTGTACATGAGTGGAT 57.053 39.130 23.13 12.34 44.30 3.41
676 1038 6.015940 ACACAATGAAGGAAGATGGTCTTTTC 60.016 38.462 0.00 0.00 36.73 2.29
677 1039 5.478332 ACAATGAAGGAAGATGGTCTTTTCC 59.522 40.000 0.00 0.00 36.73 3.13
697 1060 2.419990 CCTTAGGGTGCATTGACATCGA 60.420 50.000 0.00 0.00 0.00 3.59
713 1076 4.389374 ACATCGAAAGTTGTTGGATGTCT 58.611 39.130 9.93 0.00 42.86 3.41
714 1077 4.821805 ACATCGAAAGTTGTTGGATGTCTT 59.178 37.500 9.93 0.00 42.86 3.01
716 1079 3.813166 TCGAAAGTTGTTGGATGTCTTCC 59.187 43.478 0.00 0.00 45.69 3.46
731 1094 8.964476 GGATGTCTTCCATTTCTCTTATACAA 57.036 34.615 0.00 0.00 44.74 2.41
732 1095 9.050601 GGATGTCTTCCATTTCTCTTATACAAG 57.949 37.037 0.00 0.00 44.74 3.16
733 1096 9.823647 GATGTCTTCCATTTCTCTTATACAAGA 57.176 33.333 0.00 0.00 35.12 3.02
740 1103 9.496873 TCCATTTCTCTTATACAAGAAAAACGA 57.503 29.630 11.01 6.15 42.86 3.85
745 1108 8.827177 TCTCTTATACAAGAAAAACGATGTGT 57.173 30.769 0.00 0.00 40.28 3.72
746 1109 9.917129 TCTCTTATACAAGAAAAACGATGTGTA 57.083 29.630 0.00 0.00 40.28 2.90
748 1111 9.917129 TCTTATACAAGAAAAACGATGTGTAGA 57.083 29.630 0.00 0.00 37.85 2.59
752 1115 7.259290 ACAAGAAAAACGATGTGTAGATTGT 57.741 32.000 0.00 0.00 0.00 2.71
753 1116 7.703328 ACAAGAAAAACGATGTGTAGATTGTT 58.297 30.769 0.00 0.00 32.20 2.83
757 1120 5.763444 AAACGATGTGTAGATTGTTCGAG 57.237 39.130 0.00 0.00 29.97 4.04
758 1121 3.770666 ACGATGTGTAGATTGTTCGAGG 58.229 45.455 0.00 0.00 0.00 4.63
759 1122 3.116300 CGATGTGTAGATTGTTCGAGGG 58.884 50.000 0.00 0.00 0.00 4.30
760 1123 3.458189 GATGTGTAGATTGTTCGAGGGG 58.542 50.000 0.00 0.00 0.00 4.79
761 1124 1.553248 TGTGTAGATTGTTCGAGGGGG 59.447 52.381 0.00 0.00 0.00 5.40
901 3587 9.108284 GAATTAAACACCCCCAATTTATTCATG 57.892 33.333 0.00 0.00 0.00 3.07
929 3615 2.360600 CAATCCGGGCCGTCCAAA 60.361 61.111 26.32 4.89 34.36 3.28
957 3643 9.073368 GCAATATACGAAATATACGACATCAGT 57.927 33.333 8.78 0.00 34.70 3.41
962 3648 4.553815 CGAAATATACGACATCAGTAGCGG 59.446 45.833 0.00 0.00 0.00 5.52
969 3655 3.318275 ACGACATCAGTAGCGGTGATAAT 59.682 43.478 0.00 0.00 32.69 1.28
1074 3761 1.134907 GTCTTCGCGAATCCCAGGTAA 60.135 52.381 23.67 0.00 0.00 2.85
1187 3876 2.237893 ACTACGATTGAATCCCCCGTTT 59.762 45.455 0.00 0.00 35.05 3.60
1188 3877 1.746470 ACGATTGAATCCCCCGTTTC 58.254 50.000 0.00 0.00 0.00 2.78
1271 3965 1.076632 TTGTTGTTTGCCCCGGACT 60.077 52.632 0.73 0.00 0.00 3.85
1396 4099 2.347490 GCTTCCGGCTCTGGTTCA 59.653 61.111 0.00 0.00 38.06 3.18
1683 4386 0.886043 CCAAAGCCAAAGCCAAAGCC 60.886 55.000 0.00 0.00 41.25 4.35
1695 4398 0.179051 CCAAAGCCAAAGCCAAAGCA 60.179 50.000 0.00 0.00 43.56 3.91
1765 4468 4.532521 AGTAGTGGTGGTAGCAAGAAGAAT 59.467 41.667 0.00 0.00 0.00 2.40
1767 4470 5.091261 AGTGGTGGTAGCAAGAAGAATAG 57.909 43.478 0.00 0.00 0.00 1.73
1825 4528 3.011517 GGGAAGCAGGAGGAGGCA 61.012 66.667 0.00 0.00 0.00 4.75
1836 4539 0.470341 GAGGAGGCACAGGGGAATAC 59.530 60.000 0.00 0.00 0.00 1.89
1847 4550 0.400594 GGGGAATACGAAGGGGATGG 59.599 60.000 0.00 0.00 0.00 3.51
1884 4587 1.783365 GCAGGGGAATAAGAAGGGGAT 59.217 52.381 0.00 0.00 0.00 3.85
1886 4589 2.108952 CAGGGGAATAAGAAGGGGATGG 59.891 54.545 0.00 0.00 0.00 3.51
1887 4590 1.429299 GGGGAATAAGAAGGGGATGGG 59.571 57.143 0.00 0.00 0.00 4.00
1888 4591 1.429299 GGGAATAAGAAGGGGATGGGG 59.571 57.143 0.00 0.00 0.00 4.96
1889 4592 2.428901 GGAATAAGAAGGGGATGGGGA 58.571 52.381 0.00 0.00 0.00 4.81
1890 4593 2.789399 GGAATAAGAAGGGGATGGGGAA 59.211 50.000 0.00 0.00 0.00 3.97
1891 4594 3.181428 GGAATAAGAAGGGGATGGGGAAG 60.181 52.174 0.00 0.00 0.00 3.46
1892 4595 1.907240 TAAGAAGGGGATGGGGAAGG 58.093 55.000 0.00 0.00 0.00 3.46
1893 4596 0.123266 AAGAAGGGGATGGGGAAGGA 59.877 55.000 0.00 0.00 0.00 3.36
1894 4597 0.327964 AGAAGGGGATGGGGAAGGAG 60.328 60.000 0.00 0.00 0.00 3.69
1895 4598 1.309102 AAGGGGATGGGGAAGGAGG 60.309 63.158 0.00 0.00 0.00 4.30
1896 4599 1.848835 AAGGGGATGGGGAAGGAGGA 61.849 60.000 0.00 0.00 0.00 3.71
1897 4600 1.772156 GGGGATGGGGAAGGAGGAG 60.772 68.421 0.00 0.00 0.00 3.69
1898 4601 1.772156 GGGATGGGGAAGGAGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
1899 4602 1.772156 GGATGGGGAAGGAGGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
1900 4603 1.772156 GATGGGGAAGGAGGAGGGG 60.772 68.421 0.00 0.00 0.00 4.79
1901 4604 3.369161 ATGGGGAAGGAGGAGGGGG 62.369 68.421 0.00 0.00 0.00 5.40
1903 4606 4.760220 GGGAAGGAGGAGGGGGCA 62.760 72.222 0.00 0.00 0.00 5.36
1904 4607 3.412408 GGAAGGAGGAGGGGGCAC 61.412 72.222 0.00 0.00 0.00 5.01
1905 4608 2.610859 GAAGGAGGAGGGGGCACA 60.611 66.667 0.00 0.00 0.00 4.57
1906 4609 2.612115 AAGGAGGAGGGGGCACAG 60.612 66.667 0.00 0.00 0.00 3.66
1907 4610 4.748798 AGGAGGAGGGGGCACAGG 62.749 72.222 0.00 0.00 0.00 4.00
1912 4615 3.023735 GAGGGGGCACAGGGGAAT 61.024 66.667 0.00 0.00 0.00 3.01
1913 4616 1.696314 GAGGGGGCACAGGGGAATA 60.696 63.158 0.00 0.00 0.00 1.75
1914 4617 1.230482 AGGGGGCACAGGGGAATAA 60.230 57.895 0.00 0.00 0.00 1.40
1915 4618 1.230212 GGGGGCACAGGGGAATAAG 59.770 63.158 0.00 0.00 0.00 1.73
1916 4619 1.286305 GGGGGCACAGGGGAATAAGA 61.286 60.000 0.00 0.00 0.00 2.10
1917 4620 0.629058 GGGGCACAGGGGAATAAGAA 59.371 55.000 0.00 0.00 0.00 2.52
1918 4621 1.410224 GGGGCACAGGGGAATAAGAAG 60.410 57.143 0.00 0.00 0.00 2.85
1919 4622 1.410224 GGGCACAGGGGAATAAGAAGG 60.410 57.143 0.00 0.00 0.00 3.46
1920 4623 1.410224 GGCACAGGGGAATAAGAAGGG 60.410 57.143 0.00 0.00 0.00 3.95
1921 4624 1.410224 GCACAGGGGAATAAGAAGGGG 60.410 57.143 0.00 0.00 0.00 4.79
1922 4625 2.205342 CACAGGGGAATAAGAAGGGGA 58.795 52.381 0.00 0.00 0.00 4.81
1963 4666 2.986728 GCAGGGGAATAAGAAGGGGATA 59.013 50.000 0.00 0.00 0.00 2.59
1979 4682 0.868186 GATAGGGAAGGAGGAGGGGA 59.132 60.000 0.00 0.00 0.00 4.81
2204 4907 2.577105 TCAAAGGGCGGGATAAACCTTA 59.423 45.455 0.00 0.00 42.22 2.69
2350 5053 2.848679 TGTGGCTCAGGTGCTCCA 60.849 61.111 7.70 0.00 35.89 3.86
2351 5054 2.046507 GTGGCTCAGGTGCTCCAG 60.047 66.667 7.70 0.00 35.89 3.86
2534 5238 2.542597 TCGTAAGCGTTCACAAACACT 58.457 42.857 0.00 0.00 39.49 3.55
2706 5410 8.368668 GTTATTATGGAAGATGTAGCTAGGTGT 58.631 37.037 4.27 0.00 0.00 4.16
2725 5429 6.426587 AGGTGTATCATGATTTTAGCTGGTT 58.573 36.000 14.65 0.00 0.00 3.67
2802 5510 1.375013 GGCCGACTTAAACGCCTCA 60.375 57.895 0.00 0.00 0.00 3.86
2934 5642 4.799564 TGCGTCCATATATGTGCATAGA 57.200 40.909 16.18 2.71 0.00 1.98
2950 5658 6.770785 TGTGCATAGAGTTCCTTAGTTTTGTT 59.229 34.615 0.00 0.00 0.00 2.83
2960 5668 8.050930 AGTTCCTTAGTTTTGTTTCTTCTACCA 58.949 33.333 0.00 0.00 0.00 3.25
2993 5701 1.169577 AGATGTAGCTAGGCGGATCG 58.830 55.000 0.00 0.00 0.00 3.69
3003 5711 2.981859 AGGCGGATCGTGAATTTAGT 57.018 45.000 0.00 0.00 0.00 2.24
3013 5721 3.438781 TCGTGAATTTAGTTGGCCATCAC 59.561 43.478 19.14 19.14 34.01 3.06
3194 5902 2.232208 CCTTCCCTTTTGGTGCTTGATC 59.768 50.000 0.00 0.00 38.10 2.92
3247 5955 5.117287 TGCAACACACAAGAAACGTTAAAAC 59.883 36.000 0.00 0.00 0.00 2.43
3255 5963 7.024768 CACAAGAAACGTTAAAACTGAAGGAA 58.975 34.615 0.00 0.00 0.00 3.36
3589 6314 6.048732 TCATGACACTTAAGGATGCAACTA 57.951 37.500 7.53 0.00 0.00 2.24
3671 6396 3.189606 TGACCCAATCTAACCACTCCAT 58.810 45.455 0.00 0.00 0.00 3.41
3721 6447 7.795272 CGTCTAAAAAGTTTACAACGTTAGCAT 59.205 33.333 0.00 0.00 32.79 3.79
3732 6458 6.139048 ACAACGTTAGCATTTGTAAAAGGT 57.861 33.333 0.00 0.00 31.65 3.50
3795 6521 0.611896 AACAAGCTTATGCCGCCCTT 60.612 50.000 0.00 0.00 40.80 3.95
3807 6533 3.272581 TGCCGCCCTTATACAAGTTTAC 58.727 45.455 0.00 0.00 0.00 2.01
3810 6536 3.875134 CCGCCCTTATACAAGTTTACCTG 59.125 47.826 0.00 0.00 0.00 4.00
3924 6652 5.559035 GCAAAAGCATAACTACCTAGCATCG 60.559 44.000 0.00 0.00 0.00 3.84
4131 6859 6.741109 TCTATATTGTGCATTGCAATTCCAG 58.259 36.000 13.94 6.95 41.47 3.86
4137 6865 4.930405 TGTGCATTGCAATTCCAGTTATTG 59.070 37.500 13.94 0.00 41.47 1.90
4187 6915 0.099436 ATGCGAAAATGAAGAGGCGC 59.901 50.000 0.00 0.00 44.15 6.53
4189 6917 1.787847 CGAAAATGAAGAGGCGCGT 59.212 52.632 8.43 0.27 0.00 6.01
4349 7077 0.472471 TCTGTTGGGTGGTTGGAGTC 59.528 55.000 0.00 0.00 0.00 3.36
4388 7116 5.189180 GGAGATCATAGGCTGAAGTTTTGT 58.811 41.667 0.00 0.00 37.44 2.83
4482 7210 7.866393 CCTGTAACATATAGCTGTAAGTGGTAC 59.134 40.741 10.69 10.69 35.30 3.34
4549 7277 5.829924 AGCACTATTTTATGGGTGAAGGATG 59.170 40.000 0.00 0.00 32.12 3.51
4609 7338 6.434652 CCAGAGAAGTTAGTACTGAAGAAGGA 59.565 42.308 5.39 0.00 34.01 3.36
4664 7393 8.226819 TGTGTTTGATGTAGGTGAAATTTACA 57.773 30.769 0.00 0.00 0.00 2.41
4760 7489 2.939103 CAAATTCGACCCTGAGATCACC 59.061 50.000 0.00 0.00 0.00 4.02
4789 7518 5.530915 CACAAGTGAGTGTCCTTTGGATAAA 59.469 40.000 0.00 0.00 32.73 1.40
4850 7579 6.968263 TGGGAGTTTCAAACATAAATGACA 57.032 33.333 2.41 0.00 0.00 3.58
4932 7661 7.043961 TCTATTCAAGCCTATCACTGTACAG 57.956 40.000 21.44 21.44 0.00 2.74
4970 7699 4.223953 GGTCATCTAGATGGAAGGTACCA 58.776 47.826 28.30 6.85 44.41 3.25
4972 7701 4.039366 GTCATCTAGATGGAAGGTACCACC 59.961 50.000 28.30 17.01 43.03 4.61
5059 7788 2.813754 CAGGTGGTTGTACATGTTCCTG 59.186 50.000 2.30 17.09 35.90 3.86
5076 7805 2.178764 TCCTGCTCCTGAGGACTCATAT 59.821 50.000 0.00 0.00 39.13 1.78
5090 7819 4.344102 GGACTCATATAGGGCAACACACTA 59.656 45.833 0.00 0.00 39.74 2.74
5110 7839 1.568504 TGCTCCATTTCCTACCGAGT 58.431 50.000 0.00 0.00 0.00 4.18
5208 7937 0.251787 AACACATTCCTCTTGCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
5227 7956 1.898154 GAGGCTCGCCAAGTTCCTA 59.102 57.895 11.02 0.00 38.92 2.94
5282 8011 4.101448 GCCTCGGCATGTCCCACT 62.101 66.667 2.41 0.00 41.49 4.00
5285 8014 1.330655 CCTCGGCATGTCCCACTAGT 61.331 60.000 0.00 0.00 0.00 2.57
5542 8299 2.270986 GCACAGCTTGGGGAGTTGG 61.271 63.158 0.00 0.00 40.56 3.77
5559 8316 3.418068 GCTGCTCGTGCTGACCAC 61.418 66.667 18.79 0.00 40.01 4.16
5735 8492 2.105930 CTACCGCTCTGCAGAGGC 59.894 66.667 37.86 28.93 43.35 4.70
5892 8649 2.673074 GCTAAATGCTCGTGCCGTA 58.327 52.632 7.05 0.00 38.71 4.02
6049 8806 9.114965 CATATCGATGAATTTTCTCAGCATTTC 57.885 33.333 8.54 0.00 34.73 2.17
6084 8841 0.250166 GGTCGGTTGTACTGCCAGTT 60.250 55.000 1.02 0.00 0.00 3.16
6086 8843 0.466543 TCGGTTGTACTGCCAGTTGT 59.533 50.000 1.02 0.00 0.00 3.32
6092 8849 1.134640 TGTACTGCCAGTTGTGTCGTT 60.135 47.619 1.02 0.00 0.00 3.85
6112 8869 7.148120 TGTCGTTGGATGTTTACTTTTTGGTTA 60.148 33.333 0.00 0.00 0.00 2.85
6150 8907 3.138304 TGTGAGAAGTCGGGATGTTTTG 58.862 45.455 0.00 0.00 0.00 2.44
6169 8926 8.621532 TGTTTTGTTCTCTTATCTTGTATGCT 57.378 30.769 0.00 0.00 0.00 3.79
6241 8998 4.023279 TCCATGTTGCTGTGTTGATGTTAC 60.023 41.667 0.00 0.00 0.00 2.50
6250 9007 7.359595 TGCTGTGTTGATGTTACTATGTTTTC 58.640 34.615 0.00 0.00 0.00 2.29
6306 9063 5.187186 GTGACCTCTATCTGGGTTTGTAAGA 59.813 44.000 0.00 0.00 35.77 2.10
6313 9070 4.139859 TCTGGGTTTGTAAGACGAACAA 57.860 40.909 10.98 0.00 42.82 2.83
6335 9092 5.607119 ATGGTGTTTCTATGTCGTCAAAC 57.393 39.130 0.00 0.00 0.00 2.93
6395 9152 2.066262 TCGTTGGATTCTTCGCTGAAC 58.934 47.619 0.00 0.00 0.00 3.18
6425 9183 9.685828 GTTTCTAAACATATACTTTTTGTGGCA 57.314 29.630 0.74 0.00 38.74 4.92
6590 9348 0.737715 GCTTCGTCTTCGTGGCTGAT 60.738 55.000 0.00 0.00 38.33 2.90
6591 9349 1.272781 CTTCGTCTTCGTGGCTGATC 58.727 55.000 0.00 0.00 38.33 2.92
6592 9350 0.456142 TTCGTCTTCGTGGCTGATCG 60.456 55.000 0.00 0.00 38.33 3.69
6593 9351 1.136774 CGTCTTCGTGGCTGATCGA 59.863 57.895 0.00 0.00 0.00 3.59
6594 9352 0.456142 CGTCTTCGTGGCTGATCGAA 60.456 55.000 0.00 0.00 42.41 3.71
6596 9354 1.855360 GTCTTCGTGGCTGATCGAATC 59.145 52.381 0.00 0.00 43.35 2.52
6597 9355 1.751351 TCTTCGTGGCTGATCGAATCT 59.249 47.619 0.00 0.00 43.35 2.40
6598 9356 1.857217 CTTCGTGGCTGATCGAATCTG 59.143 52.381 0.00 0.00 43.35 2.90
6599 9357 0.817654 TCGTGGCTGATCGAATCTGT 59.182 50.000 0.00 0.00 33.13 3.41
6600 9358 0.926155 CGTGGCTGATCGAATCTGTG 59.074 55.000 0.00 0.00 0.00 3.66
6601 9359 1.293924 GTGGCTGATCGAATCTGTGG 58.706 55.000 0.00 0.00 0.00 4.17
6603 9361 0.533755 GGCTGATCGAATCTGTGGGG 60.534 60.000 0.00 0.00 0.00 4.96
6604 9362 0.533755 GCTGATCGAATCTGTGGGGG 60.534 60.000 0.00 0.00 0.00 5.40
6605 9363 1.123077 CTGATCGAATCTGTGGGGGA 58.877 55.000 0.00 0.00 0.00 4.81
6606 9364 1.696336 CTGATCGAATCTGTGGGGGAT 59.304 52.381 0.00 0.00 0.00 3.85
6607 9365 1.417517 TGATCGAATCTGTGGGGGATG 59.582 52.381 0.00 0.00 0.00 3.51
6608 9366 0.767375 ATCGAATCTGTGGGGGATGG 59.233 55.000 0.00 0.00 0.00 3.51
6609 9367 1.526917 CGAATCTGTGGGGGATGGC 60.527 63.158 0.00 0.00 0.00 4.40
6610 9368 1.925888 GAATCTGTGGGGGATGGCT 59.074 57.895 0.00 0.00 0.00 4.75
6611 9369 0.466922 GAATCTGTGGGGGATGGCTG 60.467 60.000 0.00 0.00 0.00 4.85
6612 9370 1.941403 AATCTGTGGGGGATGGCTGG 61.941 60.000 0.00 0.00 0.00 4.85
6613 9371 2.863383 ATCTGTGGGGGATGGCTGGA 62.863 60.000 0.00 0.00 0.00 3.86
6614 9372 2.534011 TGTGGGGGATGGCTGGAA 60.534 61.111 0.00 0.00 0.00 3.53
6615 9373 2.276740 GTGGGGGATGGCTGGAAG 59.723 66.667 0.00 0.00 0.00 3.46
6616 9374 3.023116 TGGGGGATGGCTGGAAGG 61.023 66.667 0.00 0.00 0.00 3.46
6617 9375 3.023735 GGGGGATGGCTGGAAGGT 61.024 66.667 0.00 0.00 0.00 3.50
6618 9376 2.597903 GGGGATGGCTGGAAGGTC 59.402 66.667 0.00 0.00 0.00 3.85
6619 9377 2.308722 GGGGATGGCTGGAAGGTCA 61.309 63.158 0.00 0.00 0.00 4.02
6627 9385 2.601664 CTGGAAGGTCAGCCTAGCT 58.398 57.895 0.00 0.00 46.33 3.32
6628 9386 1.781786 CTGGAAGGTCAGCCTAGCTA 58.218 55.000 0.00 0.00 46.33 3.32
6629 9387 1.686052 CTGGAAGGTCAGCCTAGCTAG 59.314 57.143 14.20 14.20 46.33 3.42
6630 9388 1.007238 TGGAAGGTCAGCCTAGCTAGT 59.993 52.381 19.31 0.00 46.33 2.57
6631 9389 2.112190 GGAAGGTCAGCCTAGCTAGTT 58.888 52.381 19.31 5.18 46.33 2.24
6632 9390 2.502130 GGAAGGTCAGCCTAGCTAGTTT 59.498 50.000 19.31 4.30 46.33 2.66
6633 9391 3.055021 GGAAGGTCAGCCTAGCTAGTTTT 60.055 47.826 19.31 1.77 46.33 2.43
6634 9392 3.618690 AGGTCAGCCTAGCTAGTTTTG 57.381 47.619 19.31 13.49 44.90 2.44
6635 9393 2.907042 AGGTCAGCCTAGCTAGTTTTGT 59.093 45.455 19.31 0.00 44.90 2.83
6636 9394 3.055747 AGGTCAGCCTAGCTAGTTTTGTC 60.056 47.826 19.31 11.19 44.90 3.18
6637 9395 3.306780 GGTCAGCCTAGCTAGTTTTGTCA 60.307 47.826 19.31 0.00 36.40 3.58
6638 9396 4.315803 GTCAGCCTAGCTAGTTTTGTCAA 58.684 43.478 19.31 0.00 36.40 3.18
6639 9397 4.938226 GTCAGCCTAGCTAGTTTTGTCAAT 59.062 41.667 19.31 0.00 36.40 2.57
6640 9398 5.064071 GTCAGCCTAGCTAGTTTTGTCAATC 59.936 44.000 19.31 0.00 36.40 2.67
6641 9399 4.033358 CAGCCTAGCTAGTTTTGTCAATCG 59.967 45.833 19.31 0.83 36.40 3.34
6642 9400 3.309954 GCCTAGCTAGTTTTGTCAATCGG 59.690 47.826 19.31 1.41 0.00 4.18
6643 9401 3.309954 CCTAGCTAGTTTTGTCAATCGGC 59.690 47.826 19.31 0.00 0.00 5.54
6644 9402 2.084546 AGCTAGTTTTGTCAATCGGCC 58.915 47.619 0.00 0.00 0.00 6.13
6645 9403 1.132453 GCTAGTTTTGTCAATCGGCCC 59.868 52.381 0.00 0.00 0.00 5.80
6646 9404 2.711542 CTAGTTTTGTCAATCGGCCCT 58.288 47.619 0.00 0.00 0.00 5.19
6647 9405 1.247567 AGTTTTGTCAATCGGCCCTG 58.752 50.000 0.00 0.00 0.00 4.45
6648 9406 1.202879 AGTTTTGTCAATCGGCCCTGA 60.203 47.619 0.00 0.00 0.00 3.86
6649 9407 1.068541 GTTTTGTCAATCGGCCCTGAC 60.069 52.381 16.70 16.70 41.93 3.51
6650 9408 0.400213 TTTGTCAATCGGCCCTGACT 59.600 50.000 21.56 0.00 42.06 3.41
6651 9409 0.036388 TTGTCAATCGGCCCTGACTC 60.036 55.000 21.56 4.15 42.06 3.36
6652 9410 1.519455 GTCAATCGGCCCTGACTCG 60.519 63.158 16.41 0.00 39.11 4.18
6653 9411 1.982395 TCAATCGGCCCTGACTCGT 60.982 57.895 0.00 0.00 0.00 4.18
6654 9412 1.519455 CAATCGGCCCTGACTCGTC 60.519 63.158 0.00 0.00 0.00 4.20
6655 9413 1.682684 AATCGGCCCTGACTCGTCT 60.683 57.895 0.00 0.00 0.00 4.18
6656 9414 1.668101 AATCGGCCCTGACTCGTCTC 61.668 60.000 0.00 0.00 0.00 3.36
6657 9415 3.827898 CGGCCCTGACTCGTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
6658 9416 2.363147 GGCCCTGACTCGTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
6659 9417 2.419739 GGCCCTGACTCGTCTCCTC 61.420 68.421 0.00 0.00 0.00 3.71
6660 9418 2.419739 GCCCTGACTCGTCTCCTCC 61.420 68.421 0.00 0.00 0.00 4.30
6661 9419 1.304952 CCCTGACTCGTCTCCTCCT 59.695 63.158 0.00 0.00 0.00 3.69
6662 9420 0.323908 CCCTGACTCGTCTCCTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
6663 9421 0.814457 CCTGACTCGTCTCCTCCTTG 59.186 60.000 0.00 0.00 0.00 3.61
6664 9422 0.814457 CTGACTCGTCTCCTCCTTGG 59.186 60.000 0.00 0.00 37.10 3.61
6665 9423 0.112606 TGACTCGTCTCCTCCTTGGT 59.887 55.000 0.00 0.00 37.07 3.67
6666 9424 1.353358 TGACTCGTCTCCTCCTTGGTA 59.647 52.381 0.00 0.00 37.07 3.25
6667 9425 1.744522 GACTCGTCTCCTCCTTGGTAC 59.255 57.143 0.00 0.00 37.07 3.34
6668 9426 1.104630 CTCGTCTCCTCCTTGGTACC 58.895 60.000 4.43 4.43 37.07 3.34
6669 9427 0.702902 TCGTCTCCTCCTTGGTACCT 59.297 55.000 14.36 0.00 37.07 3.08
6670 9428 1.918262 TCGTCTCCTCCTTGGTACCTA 59.082 52.381 14.36 4.36 37.07 3.08
6671 9429 2.022934 CGTCTCCTCCTTGGTACCTAC 58.977 57.143 14.36 0.00 37.07 3.18
6672 9430 2.386779 GTCTCCTCCTTGGTACCTACC 58.613 57.143 14.36 0.00 46.62 3.18
6684 9442 4.397481 GGTACCTACCGCTATTGAACTT 57.603 45.455 4.06 0.00 36.50 2.66
6685 9443 4.366586 GGTACCTACCGCTATTGAACTTC 58.633 47.826 4.06 0.00 36.50 3.01
6686 9444 4.099113 GGTACCTACCGCTATTGAACTTCT 59.901 45.833 4.06 0.00 36.50 2.85
6687 9445 4.124851 ACCTACCGCTATTGAACTTCTG 57.875 45.455 0.00 0.00 0.00 3.02
6688 9446 3.514309 ACCTACCGCTATTGAACTTCTGT 59.486 43.478 0.00 0.00 0.00 3.41
6782 9557 0.324552 TGGCAAGATGGTTGGGATGG 60.325 55.000 0.00 0.00 0.00 3.51
6790 9565 0.266152 TGGTTGGGATGGGGTTGTTT 59.734 50.000 0.00 0.00 0.00 2.83
6853 9658 0.249868 TTCGAGGACAGTGGCTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
6867 9672 0.036952 CTTGTGGATCTGGTCTGCGT 60.037 55.000 0.00 0.00 0.00 5.24
6876 9681 4.760047 GGTCTGCGTCGGTGGCAT 62.760 66.667 0.00 0.00 40.09 4.40
6893 9737 2.418910 ATAGAGTGGCTGCGCGAGT 61.419 57.895 12.10 0.00 0.00 4.18
6953 9797 0.108329 CTCGTGGTGGTATGGTGTCC 60.108 60.000 0.00 0.00 0.00 4.02
7027 9871 1.644786 GCGTGGGATGGAAGAAACCG 61.645 60.000 0.00 0.00 0.00 4.44
7083 9927 2.547798 GTTGGCGACGTTCCGTTC 59.452 61.111 0.00 0.00 41.37 3.95
7091 9941 0.731514 GACGTTCCGTTCGATGCTGA 60.732 55.000 0.00 0.00 41.37 4.26
7092 9942 0.319211 ACGTTCCGTTCGATGCTGAA 60.319 50.000 0.00 0.00 36.35 3.02
7250 10103 6.039829 GGATTGGTTCCTATCCTTCACATTTC 59.960 42.308 19.71 0.00 41.78 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.534278 TCACACACCAATTCTAAAAGCATGA 59.466 36.000 0.00 0.00 0.00 3.07
125 126 1.428912 TGAGCAAGAGGGGAAAATGGT 59.571 47.619 0.00 0.00 0.00 3.55
126 127 2.220653 TGAGCAAGAGGGGAAAATGG 57.779 50.000 0.00 0.00 0.00 3.16
134 138 0.984230 TACCAGGTTGAGCAAGAGGG 59.016 55.000 0.00 0.00 0.00 4.30
224 585 9.753674 AGGTGATTTTATGAGTAAGGATGAAAA 57.246 29.630 0.00 0.00 0.00 2.29
277 638 0.608130 CTCATGGACTTGGACGGTCA 59.392 55.000 10.76 0.00 35.61 4.02
331 692 4.291783 CGACAAAAATTAGGGTTTTGCGA 58.708 39.130 15.04 0.00 45.65 5.10
461 822 8.095452 AGGTAGACTAATTGTTCCATCTTCAT 57.905 34.615 0.00 0.00 0.00 2.57
468 829 6.727231 TGGACTTAGGTAGACTAATTGTTCCA 59.273 38.462 0.00 0.00 40.71 3.53
493 854 2.615288 CTCCCCTCCTTTGCCCCT 60.615 66.667 0.00 0.00 0.00 4.79
517 878 4.178956 AGGGTTCTAAGGAAACAAAGCA 57.821 40.909 0.00 0.00 40.68 3.91
518 879 5.048224 GGTTAGGGTTCTAAGGAAACAAAGC 60.048 44.000 0.00 0.00 40.68 3.51
523 884 4.622457 CGGAGGTTAGGGTTCTAAGGAAAC 60.622 50.000 0.00 0.00 36.27 2.78
549 910 6.945938 TCATCTTTGTAAAAACCTCCGAAA 57.054 33.333 0.00 0.00 0.00 3.46
569 930 7.041721 TCACATTGTTAACGCTCTCTATTCAT 58.958 34.615 0.26 0.00 0.00 2.57
586 947 3.646162 TGAGACTACCAGGTTCACATTGT 59.354 43.478 0.00 0.00 0.00 2.71
597 959 6.038985 CACTCATGTACAATGAGACTACCAG 58.961 44.000 27.55 11.06 46.25 4.00
600 962 6.208988 TCCACTCATGTACAATGAGACTAC 57.791 41.667 27.55 0.00 46.25 2.73
619 981 9.959721 AGGGTTCATTGTATATAATGTATCCAC 57.040 33.333 23.78 15.76 39.63 4.02
645 1007 7.861629 ACCATCTTCCTTCATTGTGTTATCTA 58.138 34.615 0.00 0.00 0.00 1.98
676 1038 1.942657 CGATGTCAATGCACCCTAAGG 59.057 52.381 0.00 0.00 40.04 2.69
677 1039 2.905075 TCGATGTCAATGCACCCTAAG 58.095 47.619 0.00 0.00 0.00 2.18
678 1040 3.342377 TTCGATGTCAATGCACCCTAA 57.658 42.857 0.00 0.00 0.00 2.69
679 1041 3.270027 CTTTCGATGTCAATGCACCCTA 58.730 45.455 0.00 0.00 0.00 3.53
714 1077 9.496873 TCGTTTTTCTTGTATAAGAGAAATGGA 57.503 29.630 24.58 18.73 45.19 3.41
719 1082 9.268268 ACACATCGTTTTTCTTGTATAAGAGAA 57.732 29.630 1.97 1.80 43.41 2.87
720 1083 8.827177 ACACATCGTTTTTCTTGTATAAGAGA 57.173 30.769 1.97 0.00 43.41 3.10
722 1085 9.917129 TCTACACATCGTTTTTCTTGTATAAGA 57.083 29.630 0.00 0.00 41.06 2.10
726 1089 8.999431 ACAATCTACACATCGTTTTTCTTGTAT 58.001 29.630 0.00 0.00 0.00 2.29
727 1090 8.373048 ACAATCTACACATCGTTTTTCTTGTA 57.627 30.769 0.00 0.00 0.00 2.41
728 1091 7.259290 ACAATCTACACATCGTTTTTCTTGT 57.741 32.000 0.00 0.00 0.00 3.16
729 1092 7.058354 CGAACAATCTACACATCGTTTTTCTTG 59.942 37.037 0.00 0.00 0.00 3.02
730 1093 7.042321 TCGAACAATCTACACATCGTTTTTCTT 60.042 33.333 0.00 0.00 0.00 2.52
731 1094 6.422701 TCGAACAATCTACACATCGTTTTTCT 59.577 34.615 0.00 0.00 0.00 2.52
732 1095 6.586751 TCGAACAATCTACACATCGTTTTTC 58.413 36.000 0.00 0.00 0.00 2.29
733 1096 6.347402 CCTCGAACAATCTACACATCGTTTTT 60.347 38.462 0.00 0.00 0.00 1.94
734 1097 5.120208 CCTCGAACAATCTACACATCGTTTT 59.880 40.000 0.00 0.00 0.00 2.43
735 1098 4.625742 CCTCGAACAATCTACACATCGTTT 59.374 41.667 0.00 0.00 0.00 3.60
736 1099 4.174009 CCTCGAACAATCTACACATCGTT 58.826 43.478 0.00 0.00 0.00 3.85
737 1100 3.428999 CCCTCGAACAATCTACACATCGT 60.429 47.826 0.00 0.00 0.00 3.73
738 1101 3.116300 CCCTCGAACAATCTACACATCG 58.884 50.000 0.00 0.00 0.00 3.84
739 1102 3.458189 CCCCTCGAACAATCTACACATC 58.542 50.000 0.00 0.00 0.00 3.06
740 1103 2.170607 CCCCCTCGAACAATCTACACAT 59.829 50.000 0.00 0.00 0.00 3.21
741 1104 1.553248 CCCCCTCGAACAATCTACACA 59.447 52.381 0.00 0.00 0.00 3.72
742 1105 2.311124 CCCCCTCGAACAATCTACAC 57.689 55.000 0.00 0.00 0.00 2.90
763 1126 4.481368 AAACTTTTTGAAGAACACCCCC 57.519 40.909 0.00 0.00 0.00 5.40
793 1156 8.877864 TCTATAGGATTTTCTTTCCTGCAAAA 57.122 30.769 0.00 0.00 43.52 2.44
799 1162 7.399674 AGCCATCTATAGGATTTTCTTTCCT 57.600 36.000 0.00 0.00 45.59 3.36
860 3524 9.037737 GGTGTTTAATTCGCTAAGATGTGTATA 57.962 33.333 0.00 0.00 0.00 1.47
901 3587 2.974698 CGGATTGAGCGATGGCCC 60.975 66.667 0.00 0.00 41.24 5.80
906 3592 4.609018 CGGCCCGGATTGAGCGAT 62.609 66.667 0.73 0.00 0.00 4.58
929 3615 7.751793 TGATGTCGTATATTTCGTATATTGCGT 59.248 33.333 0.00 0.00 0.00 5.24
962 3648 9.981460 AATAAATAGAAGGGGGATGATTATCAC 57.019 33.333 0.00 0.00 35.92 3.06
969 3655 5.248477 CGAGGAATAAATAGAAGGGGGATGA 59.752 44.000 0.00 0.00 0.00 2.92
1089 3776 0.179108 GGTTGCTAGCCGAACGAGAT 60.179 55.000 13.29 0.00 0.00 2.75
1166 3855 1.492764 ACGGGGGATTCAATCGTAGT 58.507 50.000 0.00 0.00 32.03 2.73
1169 3858 1.746470 GAAACGGGGGATTCAATCGT 58.254 50.000 0.00 0.00 35.48 3.73
1187 3876 0.250234 CATCTGGAAGGGCAGAACGA 59.750 55.000 0.00 0.00 0.00 3.85
1188 3877 0.036010 ACATCTGGAAGGGCAGAACG 60.036 55.000 0.00 0.00 0.00 3.95
1533 4236 0.317479 AGAAGGAGTGGACGGTTTCG 59.683 55.000 0.00 0.00 43.02 3.46
1568 4271 1.251251 GTGGCTGGCTTCAAAGATGT 58.749 50.000 2.00 0.00 0.00 3.06
1657 4360 1.168714 GCTTTGGCTTTGGAGTCGAT 58.831 50.000 0.00 0.00 35.22 3.59
1765 4468 2.427889 CCTCTCCTTATGCCCCTTCCTA 60.428 54.545 0.00 0.00 0.00 2.94
1767 4470 0.767998 CCTCTCCTTATGCCCCTTCC 59.232 60.000 0.00 0.00 0.00 3.46
1825 4528 0.043637 TCCCCTTCGTATTCCCCTGT 59.956 55.000 0.00 0.00 0.00 4.00
1836 4539 1.692749 TCCTTCCCCATCCCCTTCG 60.693 63.158 0.00 0.00 0.00 3.79
1863 4566 0.179018 CCCCTTCTTATTCCCCTGCG 60.179 60.000 0.00 0.00 0.00 5.18
1884 4587 4.038804 CCCCCTCCTCCTTCCCCA 62.039 72.222 0.00 0.00 0.00 4.96
1886 4589 4.760220 TGCCCCCTCCTCCTTCCC 62.760 72.222 0.00 0.00 0.00 3.97
1887 4590 3.412408 GTGCCCCCTCCTCCTTCC 61.412 72.222 0.00 0.00 0.00 3.46
1888 4591 2.610859 TGTGCCCCCTCCTCCTTC 60.611 66.667 0.00 0.00 0.00 3.46
1889 4592 2.612115 CTGTGCCCCCTCCTCCTT 60.612 66.667 0.00 0.00 0.00 3.36
1890 4593 4.748798 CCTGTGCCCCCTCCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
1895 4598 1.286305 TTATTCCCCTGTGCCCCCTC 61.286 60.000 0.00 0.00 0.00 4.30
1896 4599 1.230482 TTATTCCCCTGTGCCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
1897 4600 1.230212 CTTATTCCCCTGTGCCCCC 59.770 63.158 0.00 0.00 0.00 5.40
1898 4601 0.629058 TTCTTATTCCCCTGTGCCCC 59.371 55.000 0.00 0.00 0.00 5.80
1899 4602 1.410224 CCTTCTTATTCCCCTGTGCCC 60.410 57.143 0.00 0.00 0.00 5.36
1900 4603 1.410224 CCCTTCTTATTCCCCTGTGCC 60.410 57.143 0.00 0.00 0.00 5.01
1901 4604 1.410224 CCCCTTCTTATTCCCCTGTGC 60.410 57.143 0.00 0.00 0.00 4.57
1902 4605 2.205342 TCCCCTTCTTATTCCCCTGTG 58.795 52.381 0.00 0.00 0.00 3.66
1903 4606 2.680439 TCCCCTTCTTATTCCCCTGT 57.320 50.000 0.00 0.00 0.00 4.00
1904 4607 2.108952 CCATCCCCTTCTTATTCCCCTG 59.891 54.545 0.00 0.00 0.00 4.45
1905 4608 2.433031 CCATCCCCTTCTTATTCCCCT 58.567 52.381 0.00 0.00 0.00 4.79
1906 4609 1.429299 CCCATCCCCTTCTTATTCCCC 59.571 57.143 0.00 0.00 0.00 4.81
1907 4610 1.429299 CCCCATCCCCTTCTTATTCCC 59.571 57.143 0.00 0.00 0.00 3.97
1908 4611 2.428901 TCCCCATCCCCTTCTTATTCC 58.571 52.381 0.00 0.00 0.00 3.01
1909 4612 3.181428 CCTTCCCCATCCCCTTCTTATTC 60.181 52.174 0.00 0.00 0.00 1.75
1910 4613 2.791774 CCTTCCCCATCCCCTTCTTATT 59.208 50.000 0.00 0.00 0.00 1.40
1911 4614 2.020037 TCCTTCCCCATCCCCTTCTTAT 60.020 50.000 0.00 0.00 0.00 1.73
1912 4615 1.371774 TCCTTCCCCATCCCCTTCTTA 59.628 52.381 0.00 0.00 0.00 2.10
1913 4616 0.123266 TCCTTCCCCATCCCCTTCTT 59.877 55.000 0.00 0.00 0.00 2.52
1914 4617 0.327964 CTCCTTCCCCATCCCCTTCT 60.328 60.000 0.00 0.00 0.00 2.85
1915 4618 1.356494 CCTCCTTCCCCATCCCCTTC 61.356 65.000 0.00 0.00 0.00 3.46
1916 4619 1.309102 CCTCCTTCCCCATCCCCTT 60.309 63.158 0.00 0.00 0.00 3.95
1917 4620 2.272170 TCCTCCTTCCCCATCCCCT 61.272 63.158 0.00 0.00 0.00 4.79
1918 4621 1.772156 CTCCTCCTTCCCCATCCCC 60.772 68.421 0.00 0.00 0.00 4.81
1919 4622 1.772156 CCTCCTCCTTCCCCATCCC 60.772 68.421 0.00 0.00 0.00 3.85
1920 4623 1.772156 CCCTCCTCCTTCCCCATCC 60.772 68.421 0.00 0.00 0.00 3.51
1921 4624 1.772156 CCCCTCCTCCTTCCCCATC 60.772 68.421 0.00 0.00 0.00 3.51
1922 4625 2.378522 CCCCTCCTCCTTCCCCAT 59.621 66.667 0.00 0.00 0.00 4.00
1963 4666 2.788589 GTCCCCTCCTCCTTCCCT 59.211 66.667 0.00 0.00 0.00 4.20
1979 4682 0.482887 CCACCCCCTTCTTTCTTGGT 59.517 55.000 0.00 0.00 0.00 3.67
2083 4786 3.048600 CACCATCTCCTTCTTCCCCATA 58.951 50.000 0.00 0.00 0.00 2.74
2204 4907 5.418840 ACTTCCCGTTAAATGCATTTCTGAT 59.581 36.000 27.28 6.88 0.00 2.90
2534 5238 5.606749 ACAAGGGCATACATCCTCATTACTA 59.393 40.000 0.00 0.00 32.02 1.82
2796 5504 4.442706 ACATAGATTAACTGGTTGAGGCG 58.557 43.478 0.00 0.00 0.00 5.52
2896 5604 1.672363 CGCATGCACATACTGTCCAAT 59.328 47.619 19.57 0.00 0.00 3.16
2915 5623 5.807520 GGAACTCTATGCACATATATGGACG 59.192 44.000 16.96 6.23 0.00 4.79
2993 5701 3.427503 CGGTGATGGCCAACTAAATTCAC 60.428 47.826 20.37 20.37 33.10 3.18
3003 5711 1.679139 GATGATTCGGTGATGGCCAA 58.321 50.000 10.96 0.00 0.00 4.52
3135 5843 6.486993 GGTTAATATTGGAGACATGGAAGACC 59.513 42.308 0.00 0.00 42.32 3.85
3194 5902 8.715191 ATTATGAAGTCTACTGCAGAAGAAAG 57.285 34.615 23.35 9.33 36.29 2.62
3262 5970 5.362556 GCTTTAGCAACTTCATTGACAGA 57.637 39.130 0.00 0.00 41.23 3.41
3343 6051 7.715249 ACCAGTGCATAGGTTTAACTACATATG 59.285 37.037 7.17 0.00 42.59 1.78
3455 6163 1.470098 GTGCTGGGCTGACACATAAAG 59.530 52.381 0.00 0.00 34.43 1.85
3569 6294 6.237901 ACATTAGTTGCATCCTTAAGTGTCA 58.762 36.000 0.97 0.00 0.00 3.58
3671 6396 7.120579 ACGGACAATTGAATAAGCATTTGAGTA 59.879 33.333 13.59 0.00 34.76 2.59
3795 6521 5.013287 TGGGCTTCACAGGTAAACTTGTATA 59.987 40.000 0.00 0.00 34.23 1.47
3807 6533 1.402787 AACAAGTTGGGCTTCACAGG 58.597 50.000 7.96 0.00 34.69 4.00
3810 6536 4.399303 AGCATATAACAAGTTGGGCTTCAC 59.601 41.667 7.96 0.00 34.69 3.18
4078 6806 7.398332 ACCATTTTTCAGAGGAATAAGAAGCAT 59.602 33.333 0.00 0.00 31.93 3.79
4137 6865 5.066893 AGTGTCATCATGATAACATTGGCAC 59.933 40.000 14.80 16.40 43.91 5.01
4187 6915 3.492656 CCAGGGACCACTAACATATCACG 60.493 52.174 0.00 0.00 0.00 4.35
4189 6917 4.002256 TCCAGGGACCACTAACATATCA 57.998 45.455 0.00 0.00 0.00 2.15
4258 6986 9.520204 GCAAAACTAGATGTGCATACAAAATAT 57.480 29.630 10.14 0.00 40.84 1.28
4349 7077 0.460987 CTCCAGCCTTACTCAAGCCG 60.461 60.000 0.00 0.00 0.00 5.52
4388 7116 3.556213 CCAAACTCCAATGTACAGGACGA 60.556 47.826 0.33 0.00 0.00 4.20
4482 7210 3.599730 TTATGTGTCTGCTGTCCTCTG 57.400 47.619 0.00 0.00 0.00 3.35
4514 7242 1.538047 AATAGTGCTTGGCCACTGTG 58.462 50.000 3.88 0.00 45.17 3.66
4549 7277 5.815222 AGTTTTAATCAAAAGGTTGTGTGGC 59.185 36.000 0.00 0.00 34.34 5.01
4625 7354 8.856490 ACATCAAACACATCAAAGTAGTTTTC 57.144 30.769 0.00 0.00 30.68 2.29
4664 7393 6.072199 AGAGGAAGGCAATCTTTATCAGTT 57.928 37.500 0.00 0.00 35.50 3.16
4745 7474 1.950909 GTAGAGGTGATCTCAGGGTCG 59.049 57.143 0.00 0.00 44.81 4.79
4824 7553 8.519526 TGTCATTTATGTTTGAAACTCCCATAC 58.480 33.333 9.69 1.29 0.00 2.39
4826 7555 7.537596 TGTCATTTATGTTTGAAACTCCCAT 57.462 32.000 9.69 0.00 0.00 4.00
4932 7661 1.000396 ACCCCTTGGAGCTGATTGC 60.000 57.895 0.00 0.00 37.18 3.56
4970 7699 4.038271 TGATGCCTTCTTTCTTCATGGT 57.962 40.909 0.00 0.00 0.00 3.55
4972 7701 5.381174 TGTTGATGCCTTCTTTCTTCATG 57.619 39.130 0.00 0.00 0.00 3.07
5059 7788 3.096092 CCCTATATGAGTCCTCAGGAGC 58.904 54.545 0.00 0.00 43.61 4.70
5076 7805 1.209504 GGAGCATAGTGTGTTGCCCTA 59.790 52.381 0.00 0.00 39.72 3.53
5090 7819 2.103263 GACTCGGTAGGAAATGGAGCAT 59.897 50.000 0.00 0.00 0.00 3.79
5110 7839 0.178947 AAAAATTGGCCAGGTCGGGA 60.179 50.000 5.11 0.00 34.06 5.14
5181 7910 3.584406 AGAGGAATGTGTTGAGACTCG 57.416 47.619 0.00 0.00 0.00 4.18
5208 7937 1.945354 TAGGAACTTGGCGAGCCTCG 61.945 60.000 10.36 10.36 41.20 4.63
5577 8334 2.079158 CGAGCATCATGAACAGTGGTT 58.921 47.619 0.00 0.00 35.62 3.67
5588 8345 1.126329 ATCCTCCAGGCGAGCATCAT 61.126 55.000 0.00 0.00 37.27 2.45
5735 8492 1.153939 CGAGCACCACGAGAAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
5892 8649 5.306678 GGTCTGATAAGAATGTGGGAGATCT 59.693 44.000 0.00 0.00 0.00 2.75
6056 8813 2.400269 TACAACCGACCCAAGGCACC 62.400 60.000 0.00 0.00 0.00 5.01
6084 8841 5.821516 AAAAGTAAACATCCAACGACACA 57.178 34.783 0.00 0.00 0.00 3.72
6086 8843 5.125739 ACCAAAAAGTAAACATCCAACGACA 59.874 36.000 0.00 0.00 0.00 4.35
6092 8849 9.945904 AGTTTTTAACCAAAAAGTAAACATCCA 57.054 25.926 0.00 0.00 42.70 3.41
6112 8869 9.780186 ACTTCTCACAGTTAAGCTATAGTTTTT 57.220 29.630 7.17 0.07 0.00 1.94
6169 8926 4.643463 TCATCCGGTAAGCAGTTTAACAA 58.357 39.130 0.00 0.00 0.00 2.83
6241 8998 6.612306 GGCACAGGAAAAGTAGAAAACATAG 58.388 40.000 0.00 0.00 0.00 2.23
6250 9007 1.156736 CACCGGCACAGGAAAAGTAG 58.843 55.000 0.00 0.00 34.73 2.57
6306 9063 4.151689 CGACATAGAAACACCATTGTTCGT 59.848 41.667 0.00 0.00 45.69 3.85
6313 9070 5.179368 CAGTTTGACGACATAGAAACACCAT 59.821 40.000 0.00 0.00 0.00 3.55
6325 9082 0.666274 CGCTAGCCAGTTTGACGACA 60.666 55.000 9.66 0.00 0.00 4.35
6335 9092 0.944311 ACACACGTTTCGCTAGCCAG 60.944 55.000 9.66 0.00 0.00 4.85
6425 9183 9.598517 ACATTTCAACAAAGAAAATGTGTGTAT 57.401 25.926 10.84 0.00 40.54 2.29
6555 9313 2.328289 GCATGCTCAGATGCTGCG 59.672 61.111 11.37 0.00 44.57 5.18
6590 9348 1.983119 GCCATCCCCCACAGATTCGA 61.983 60.000 0.00 0.00 0.00 3.71
6591 9349 1.526917 GCCATCCCCCACAGATTCG 60.527 63.158 0.00 0.00 0.00 3.34
6592 9350 0.466922 CAGCCATCCCCCACAGATTC 60.467 60.000 0.00 0.00 0.00 2.52
6593 9351 1.616921 CAGCCATCCCCCACAGATT 59.383 57.895 0.00 0.00 0.00 2.40
6594 9352 2.389449 CCAGCCATCCCCCACAGAT 61.389 63.158 0.00 0.00 0.00 2.90
6596 9354 2.563013 CTTCCAGCCATCCCCCACAG 62.563 65.000 0.00 0.00 0.00 3.66
6597 9355 2.534011 TTCCAGCCATCCCCCACA 60.534 61.111 0.00 0.00 0.00 4.17
6598 9356 2.276740 CTTCCAGCCATCCCCCAC 59.723 66.667 0.00 0.00 0.00 4.61
6599 9357 3.023116 CCTTCCAGCCATCCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
6600 9358 3.023735 ACCTTCCAGCCATCCCCC 61.024 66.667 0.00 0.00 0.00 5.40
6601 9359 2.276309 CTGACCTTCCAGCCATCCCC 62.276 65.000 0.00 0.00 0.00 4.81
6603 9361 4.972875 CTGACCTTCCAGCCATCC 57.027 61.111 0.00 0.00 0.00 3.51
6615 9373 3.263261 GACAAAACTAGCTAGGCTGACC 58.737 50.000 24.35 11.25 40.10 4.02
6616 9374 3.926616 TGACAAAACTAGCTAGGCTGAC 58.073 45.455 24.35 16.78 40.10 3.51
6617 9375 4.617253 TTGACAAAACTAGCTAGGCTGA 57.383 40.909 24.35 1.80 40.10 4.26
6618 9376 4.033358 CGATTGACAAAACTAGCTAGGCTG 59.967 45.833 24.35 18.53 40.10 4.85
6619 9377 4.184629 CGATTGACAAAACTAGCTAGGCT 58.815 43.478 24.35 8.66 43.41 4.58
6621 9379 3.309954 GCCGATTGACAAAACTAGCTAGG 59.690 47.826 24.35 9.25 0.00 3.02
6622 9380 3.309954 GGCCGATTGACAAAACTAGCTAG 59.690 47.826 19.44 19.44 0.00 3.42
6623 9381 3.267483 GGCCGATTGACAAAACTAGCTA 58.733 45.455 0.00 0.00 0.00 3.32
6624 9382 2.084546 GGCCGATTGACAAAACTAGCT 58.915 47.619 0.00 0.00 0.00 3.32
6625 9383 1.132453 GGGCCGATTGACAAAACTAGC 59.868 52.381 0.00 0.00 0.00 3.42
6626 9384 2.420022 CAGGGCCGATTGACAAAACTAG 59.580 50.000 0.00 0.00 0.00 2.57
6627 9385 2.039216 TCAGGGCCGATTGACAAAACTA 59.961 45.455 0.00 0.00 0.00 2.24
6628 9386 1.202879 TCAGGGCCGATTGACAAAACT 60.203 47.619 0.00 0.00 0.00 2.66
6629 9387 1.068541 GTCAGGGCCGATTGACAAAAC 60.069 52.381 21.81 2.46 42.47 2.43
6630 9388 1.202879 AGTCAGGGCCGATTGACAAAA 60.203 47.619 25.93 0.00 44.72 2.44
6631 9389 0.400213 AGTCAGGGCCGATTGACAAA 59.600 50.000 25.93 0.00 44.72 2.83
6632 9390 0.036388 GAGTCAGGGCCGATTGACAA 60.036 55.000 25.93 0.00 44.72 3.18
6633 9391 1.596934 GAGTCAGGGCCGATTGACA 59.403 57.895 25.93 0.00 44.72 3.58
6634 9392 1.519455 CGAGTCAGGGCCGATTGAC 60.519 63.158 20.10 20.10 43.08 3.18
6635 9393 1.945354 GACGAGTCAGGGCCGATTGA 61.945 60.000 0.00 0.00 0.00 2.57
6636 9394 1.519455 GACGAGTCAGGGCCGATTG 60.519 63.158 0.00 0.00 0.00 2.67
6637 9395 1.668101 GAGACGAGTCAGGGCCGATT 61.668 60.000 5.99 0.00 0.00 3.34
6638 9396 2.043852 AGACGAGTCAGGGCCGAT 60.044 61.111 5.99 0.00 0.00 4.18
6639 9397 2.750637 GAGACGAGTCAGGGCCGA 60.751 66.667 5.99 0.00 0.00 5.54
6640 9398 3.827898 GGAGACGAGTCAGGGCCG 61.828 72.222 5.99 0.00 0.00 6.13
6641 9399 2.363147 AGGAGACGAGTCAGGGCC 60.363 66.667 5.99 0.00 0.00 5.80
6642 9400 2.419739 GGAGGAGACGAGTCAGGGC 61.420 68.421 5.99 0.00 0.00 5.19
6643 9401 0.323908 AAGGAGGAGACGAGTCAGGG 60.324 60.000 5.99 0.00 0.00 4.45
6644 9402 0.814457 CAAGGAGGAGACGAGTCAGG 59.186 60.000 5.99 0.00 0.00 3.86
6645 9403 0.814457 CCAAGGAGGAGACGAGTCAG 59.186 60.000 5.99 0.00 41.22 3.51
6646 9404 0.112606 ACCAAGGAGGAGACGAGTCA 59.887 55.000 5.99 0.00 41.22 3.41
6647 9405 1.744522 GTACCAAGGAGGAGACGAGTC 59.255 57.143 0.00 0.00 41.22 3.36
6648 9406 1.616456 GGTACCAAGGAGGAGACGAGT 60.616 57.143 7.15 0.00 41.22 4.18
6649 9407 1.104630 GGTACCAAGGAGGAGACGAG 58.895 60.000 7.15 0.00 41.22 4.18
6650 9408 0.702902 AGGTACCAAGGAGGAGACGA 59.297 55.000 15.94 0.00 41.22 4.20
6651 9409 2.022934 GTAGGTACCAAGGAGGAGACG 58.977 57.143 15.94 0.00 41.22 4.18
6652 9410 2.386779 GGTAGGTACCAAGGAGGAGAC 58.613 57.143 15.94 0.00 45.73 3.36
6653 9411 1.064166 CGGTAGGTACCAAGGAGGAGA 60.064 57.143 15.94 0.00 46.80 3.71
6654 9412 1.400737 CGGTAGGTACCAAGGAGGAG 58.599 60.000 15.94 0.00 46.80 3.69
6655 9413 0.685458 GCGGTAGGTACCAAGGAGGA 60.685 60.000 15.94 0.00 46.80 3.71
6656 9414 0.686769 AGCGGTAGGTACCAAGGAGG 60.687 60.000 15.94 0.00 46.80 4.30
6657 9415 2.062971 TAGCGGTAGGTACCAAGGAG 57.937 55.000 15.94 2.34 46.80 3.69
6658 9416 2.696707 CAATAGCGGTAGGTACCAAGGA 59.303 50.000 15.94 0.00 46.80 3.36
6659 9417 2.696707 TCAATAGCGGTAGGTACCAAGG 59.303 50.000 15.94 1.11 46.80 3.61
6660 9418 4.117685 GTTCAATAGCGGTAGGTACCAAG 58.882 47.826 15.94 3.10 46.80 3.61
6661 9419 3.770933 AGTTCAATAGCGGTAGGTACCAA 59.229 43.478 15.94 0.00 46.80 3.67
6662 9420 3.368248 AGTTCAATAGCGGTAGGTACCA 58.632 45.455 15.94 0.00 46.80 3.25
6663 9421 4.099113 AGAAGTTCAATAGCGGTAGGTACC 59.901 45.833 2.73 2.73 42.98 3.34
6664 9422 5.041940 CAGAAGTTCAATAGCGGTAGGTAC 58.958 45.833 5.50 0.00 32.67 3.34
6665 9423 4.708421 ACAGAAGTTCAATAGCGGTAGGTA 59.292 41.667 5.50 0.00 34.56 3.08
6666 9424 3.514309 ACAGAAGTTCAATAGCGGTAGGT 59.486 43.478 5.50 0.00 0.00 3.08
6667 9425 4.124851 ACAGAAGTTCAATAGCGGTAGG 57.875 45.455 5.50 0.00 0.00 3.18
6668 9426 5.175856 GCATACAGAAGTTCAATAGCGGTAG 59.824 44.000 5.50 0.00 0.00 3.18
6669 9427 5.047847 GCATACAGAAGTTCAATAGCGGTA 58.952 41.667 5.50 0.00 0.00 4.02
6670 9428 3.871594 GCATACAGAAGTTCAATAGCGGT 59.128 43.478 5.50 0.00 0.00 5.68
6671 9429 4.122776 AGCATACAGAAGTTCAATAGCGG 58.877 43.478 5.50 0.00 0.00 5.52
6672 9430 4.085363 CGAGCATACAGAAGTTCAATAGCG 60.085 45.833 5.50 0.00 0.00 4.26
6673 9431 4.210120 CCGAGCATACAGAAGTTCAATAGC 59.790 45.833 5.50 2.72 0.00 2.97
6674 9432 5.592054 TCCGAGCATACAGAAGTTCAATAG 58.408 41.667 5.50 0.00 0.00 1.73
6675 9433 5.451937 CCTCCGAGCATACAGAAGTTCAATA 60.452 44.000 5.50 0.00 0.00 1.90
6676 9434 4.437239 CTCCGAGCATACAGAAGTTCAAT 58.563 43.478 5.50 0.00 0.00 2.57
6677 9435 3.368427 CCTCCGAGCATACAGAAGTTCAA 60.368 47.826 5.50 0.00 0.00 2.69
6678 9436 2.166459 CCTCCGAGCATACAGAAGTTCA 59.834 50.000 5.50 0.00 0.00 3.18
6679 9437 2.815478 CCTCCGAGCATACAGAAGTTC 58.185 52.381 0.00 0.00 0.00 3.01
6680 9438 1.134670 GCCTCCGAGCATACAGAAGTT 60.135 52.381 0.00 0.00 0.00 2.66
6681 9439 0.461961 GCCTCCGAGCATACAGAAGT 59.538 55.000 0.00 0.00 0.00 3.01
6682 9440 0.596083 CGCCTCCGAGCATACAGAAG 60.596 60.000 0.00 0.00 36.29 2.85
6683 9441 1.320344 ACGCCTCCGAGCATACAGAA 61.320 55.000 0.00 0.00 38.29 3.02
6684 9442 1.320344 AACGCCTCCGAGCATACAGA 61.320 55.000 0.00 0.00 38.29 3.41
6685 9443 0.872021 GAACGCCTCCGAGCATACAG 60.872 60.000 0.00 0.00 38.29 2.74
6686 9444 1.141019 GAACGCCTCCGAGCATACA 59.859 57.895 0.00 0.00 38.29 2.29
6687 9445 0.872021 CAGAACGCCTCCGAGCATAC 60.872 60.000 0.00 0.00 38.29 2.39
6688 9446 1.320344 ACAGAACGCCTCCGAGCATA 61.320 55.000 0.00 0.00 38.29 3.14
6782 9557 2.212900 GATGCCAGCCGAAACAACCC 62.213 60.000 0.00 0.00 0.00 4.11
6828 9605 1.658114 CACTGTCCTCGAACCGACA 59.342 57.895 8.77 8.77 37.44 4.35
6853 9658 2.105128 CCGACGCAGACCAGATCC 59.895 66.667 0.00 0.00 0.00 3.36
6867 9672 1.685765 AGCCACTCTATGCCACCGA 60.686 57.895 0.00 0.00 0.00 4.69
7027 9871 2.279120 CGAGCACAGCCGGAGATC 60.279 66.667 5.05 0.00 0.00 2.75
7080 9924 1.131126 CCACCACATTCAGCATCGAAC 59.869 52.381 0.00 0.00 0.00 3.95
7081 9925 1.271325 ACCACCACATTCAGCATCGAA 60.271 47.619 0.00 0.00 0.00 3.71
7083 9927 1.131126 GAACCACCACATTCAGCATCG 59.869 52.381 0.00 0.00 0.00 3.84
7091 9941 1.073923 GGACAGGAGAACCACCACATT 59.926 52.381 0.00 0.00 38.94 2.71
7092 9942 0.693049 GGACAGGAGAACCACCACAT 59.307 55.000 0.00 0.00 38.94 3.21
7183 10036 5.595542 TCCATTTCTATGAATCAAAGGGCTG 59.404 40.000 0.00 0.00 32.22 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.