Multiple sequence alignment - TraesCS7B01G092100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G092100 chr7B 100.000 3167 0 0 1 3167 105523801 105520635 0.000000e+00 5849.0
1 TraesCS7B01G092100 chr7B 92.344 209 13 3 2948 3155 529726123 529726329 8.590000e-76 294.0
2 TraesCS7B01G092100 chr7B 92.647 204 13 2 2953 3155 435855836 435855634 3.090000e-75 292.0
3 TraesCS7B01G092100 chr7D 90.486 2449 156 35 1 2401 140322562 140320143 0.000000e+00 3160.0
4 TraesCS7B01G092100 chr7D 93.405 561 24 6 2393 2949 140318658 140318107 0.000000e+00 819.0
5 TraesCS7B01G092100 chr7D 77.946 1324 257 32 867 2172 56234990 56236296 0.000000e+00 795.0
6 TraesCS7B01G092100 chr7D 78.954 746 140 13 861 1594 55014671 55015411 2.840000e-135 492.0
7 TraesCS7B01G092100 chr7D 73.757 1307 300 35 881 2171 54373137 54371858 1.030000e-129 473.0
8 TraesCS7B01G092100 chr7D 77.303 445 98 2 1727 2171 55015495 55015936 3.130000e-65 259.0
9 TraesCS7B01G092100 chr7D 75.068 369 84 5 1736 2103 55530146 55530507 7.030000e-37 165.0
10 TraesCS7B01G092100 chr7D 85.897 78 6 3 2849 2924 139306246 139306320 9.420000e-11 78.7
11 TraesCS7B01G092100 chr4A 78.453 1332 250 34 860 2172 673028992 673030305 0.000000e+00 835.0
12 TraesCS7B01G092100 chr4A 77.583 1258 261 18 925 2171 670980603 670979356 0.000000e+00 741.0
13 TraesCS7B01G092100 chr4A 76.972 1255 267 20 928 2171 670986015 670984772 0.000000e+00 697.0
14 TraesCS7B01G092100 chr4A 73.165 1267 305 27 941 2192 669921562 669920316 1.050000e-114 424.0
15 TraesCS7B01G092100 chr4A 72.538 1249 298 32 939 2171 669993680 669992461 6.460000e-97 364.0
16 TraesCS7B01G092100 chr4A 77.431 288 58 5 1883 2168 672197384 672197666 7.030000e-37 165.0
17 TraesCS7B01G092100 chr4A 73.576 439 100 11 1735 2170 672212924 672213349 1.520000e-33 154.0
18 TraesCS7B01G092100 chr4A 100.000 36 0 0 1735 1770 672180708 672180743 2.040000e-07 67.6
19 TraesCS7B01G092100 chr7A 77.962 1325 246 37 867 2171 60638421 60639719 0.000000e+00 787.0
20 TraesCS7B01G092100 chr7A 77.584 1316 274 16 867 2171 58990451 58989146 0.000000e+00 776.0
21 TraesCS7B01G092100 chr7A 71.316 1018 263 23 1186 2192 57890118 57889119 5.280000e-58 235.0
22 TraesCS7B01G092100 chr7A 85.714 84 10 2 2849 2930 139422013 139422096 1.560000e-13 87.9
23 TraesCS7B01G092100 chr7A 94.737 38 2 0 2912 2949 140656384 140656347 3.410000e-05 60.2
24 TraesCS7B01G092100 chr5B 94.762 210 9 2 2947 3155 572942097 572942305 3.050000e-85 326.0
25 TraesCS7B01G092100 chr5B 91.943 211 13 2 2949 3155 355402640 355402850 3.090000e-75 292.0
26 TraesCS7B01G092100 chr5B 91.866 209 15 1 2949 3155 440262954 440262746 1.110000e-74 291.0
27 TraesCS7B01G092100 chr1B 93.659 205 10 2 2949 3151 534673120 534672917 1.430000e-78 303.0
28 TraesCS7B01G092100 chr1B 92.344 209 14 1 2949 3155 1533204 1533412 2.390000e-76 296.0
29 TraesCS7B01G092100 chr2B 92.308 208 14 2 2949 3155 91234583 91234377 8.590000e-76 294.0
30 TraesCS7B01G092100 chr2B 91.204 216 15 3 2943 3155 560257974 560258188 1.110000e-74 291.0
31 TraesCS7B01G092100 chrUn 73.576 439 100 11 1735 2170 284725379 284725804 1.520000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G092100 chr7B 105520635 105523801 3166 True 5849.0 5849 100.0000 1 3167 1 chr7B.!!$R1 3166
1 TraesCS7B01G092100 chr7D 140318107 140322562 4455 True 1989.5 3160 91.9455 1 2949 2 chr7D.!!$R2 2948
2 TraesCS7B01G092100 chr7D 56234990 56236296 1306 False 795.0 795 77.9460 867 2172 1 chr7D.!!$F2 1305
3 TraesCS7B01G092100 chr7D 54371858 54373137 1279 True 473.0 473 73.7570 881 2171 1 chr7D.!!$R1 1290
4 TraesCS7B01G092100 chr7D 55014671 55015936 1265 False 375.5 492 78.1285 861 2171 2 chr7D.!!$F4 1310
5 TraesCS7B01G092100 chr4A 673028992 673030305 1313 False 835.0 835 78.4530 860 2172 1 chr4A.!!$F4 1312
6 TraesCS7B01G092100 chr4A 670979356 670980603 1247 True 741.0 741 77.5830 925 2171 1 chr4A.!!$R3 1246
7 TraesCS7B01G092100 chr4A 670984772 670986015 1243 True 697.0 697 76.9720 928 2171 1 chr4A.!!$R4 1243
8 TraesCS7B01G092100 chr4A 669920316 669921562 1246 True 424.0 424 73.1650 941 2192 1 chr4A.!!$R1 1251
9 TraesCS7B01G092100 chr4A 669992461 669993680 1219 True 364.0 364 72.5380 939 2171 1 chr4A.!!$R2 1232
10 TraesCS7B01G092100 chr7A 60638421 60639719 1298 False 787.0 787 77.9620 867 2171 1 chr7A.!!$F1 1304
11 TraesCS7B01G092100 chr7A 58989146 58990451 1305 True 776.0 776 77.5840 867 2171 1 chr7A.!!$R2 1304
12 TraesCS7B01G092100 chr7A 57889119 57890118 999 True 235.0 235 71.3160 1186 2192 1 chr7A.!!$R1 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 430 1.067974 TGTTGTACTGTGTACTGCGCT 59.932 47.619 9.73 0.0 0.0 5.92 F
1455 1512 0.388907 CCAATTCCTTGGTTGCTGCG 60.389 55.000 0.00 0.0 45.9 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 1748 0.696501 GGCCAAGGGTTGAGGAACTA 59.303 55.0 0.0 0.0 41.55 2.24 R
2977 4550 0.105039 GGGTCTCACCTGCTAATCCG 59.895 60.0 0.0 0.0 38.64 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.126871 GTAATAAACGTATCTCTGATGCACAA 57.873 34.615 0.00 0.00 0.00 3.33
28 29 2.497675 ACGTATCTCTGATGCACAACCT 59.502 45.455 0.00 0.00 0.00 3.50
29 30 3.699538 ACGTATCTCTGATGCACAACCTA 59.300 43.478 0.00 0.00 0.00 3.08
30 31 4.159693 ACGTATCTCTGATGCACAACCTAA 59.840 41.667 0.00 0.00 0.00 2.69
63 64 6.016777 CCTGTATTCCTTGAATAAGATGGCAC 60.017 42.308 0.00 0.00 36.46 5.01
65 66 3.904800 TCCTTGAATAAGATGGCACGA 57.095 42.857 0.00 0.00 35.92 4.35
85 86 6.715464 CACGACACTTCTTTTTCTACACATT 58.285 36.000 0.00 0.00 0.00 2.71
88 89 8.885722 ACGACACTTCTTTTTCTACACATTTTA 58.114 29.630 0.00 0.00 0.00 1.52
89 90 9.155053 CGACACTTCTTTTTCTACACATTTTAC 57.845 33.333 0.00 0.00 0.00 2.01
129 130 3.826157 CTCTGGCCTTCCATGTAAACAAA 59.174 43.478 3.32 0.00 42.51 2.83
130 131 4.415596 TCTGGCCTTCCATGTAAACAAAT 58.584 39.130 3.32 0.00 42.51 2.32
131 132 4.837860 TCTGGCCTTCCATGTAAACAAATT 59.162 37.500 3.32 0.00 42.51 1.82
132 133 5.306678 TCTGGCCTTCCATGTAAACAAATTT 59.693 36.000 3.32 0.00 42.51 1.82
164 165 1.661821 CGGCGTGCTATCACTAGGC 60.662 63.158 0.00 0.00 40.99 3.93
168 169 1.970447 CGTGCTATCACTAGGCGATC 58.030 55.000 0.00 0.00 40.99 3.69
171 172 3.375610 CGTGCTATCACTAGGCGATCTAT 59.624 47.826 0.00 0.00 40.99 1.98
172 173 4.667262 GTGCTATCACTAGGCGATCTATG 58.333 47.826 0.00 0.00 40.03 2.23
184 192 4.753610 AGGCGATCTATGTTTCACATGATG 59.246 41.667 0.00 0.00 39.53 3.07
208 216 1.872952 TGACAGCACAATTCCTTCACG 59.127 47.619 0.00 0.00 0.00 4.35
211 220 2.687935 ACAGCACAATTCCTTCACGTTT 59.312 40.909 0.00 0.00 0.00 3.60
213 222 2.032030 AGCACAATTCCTTCACGTTTCG 60.032 45.455 0.00 0.00 0.00 3.46
224 233 2.954316 TCACGTTTCGCATACTCATGT 58.046 42.857 0.00 0.00 34.40 3.21
229 238 3.305897 CGTTTCGCATACTCATGTTGCTA 59.694 43.478 0.00 0.00 34.40 3.49
230 239 4.025730 CGTTTCGCATACTCATGTTGCTAT 60.026 41.667 0.00 0.00 34.40 2.97
231 240 5.200454 GTTTCGCATACTCATGTTGCTATG 58.800 41.667 0.00 0.00 34.40 2.23
236 246 4.261322 GCATACTCATGTTGCTATGTTGGG 60.261 45.833 0.00 0.00 34.40 4.12
248 258 7.335924 TGTTGCTATGTTGGGATTTCTAGTTAC 59.664 37.037 0.00 0.00 0.00 2.50
259 269 7.036863 TGGGATTTCTAGTTACAGGAAAGGAAT 60.037 37.037 8.20 0.00 33.41 3.01
265 275 7.331026 TCTAGTTACAGGAAAGGAATCACATG 58.669 38.462 0.00 0.00 0.00 3.21
266 276 6.126863 AGTTACAGGAAAGGAATCACATGA 57.873 37.500 0.00 0.00 0.00 3.07
267 277 6.725364 AGTTACAGGAAAGGAATCACATGAT 58.275 36.000 0.00 0.00 36.07 2.45
268 278 6.825721 AGTTACAGGAAAGGAATCACATGATC 59.174 38.462 0.00 0.00 32.75 2.92
269 279 4.530875 ACAGGAAAGGAATCACATGATCC 58.469 43.478 0.00 1.49 32.75 3.36
290 300 4.690748 TCCTCTTTCAGTTTTAGTCATGCG 59.309 41.667 0.00 0.00 0.00 4.73
291 301 4.398247 CTCTTTCAGTTTTAGTCATGCGC 58.602 43.478 0.00 0.00 0.00 6.09
292 302 3.188460 TCTTTCAGTTTTAGTCATGCGCC 59.812 43.478 4.18 0.00 0.00 6.53
293 303 1.075542 TCAGTTTTAGTCATGCGCCG 58.924 50.000 4.18 0.00 0.00 6.46
306 316 2.403378 GCGCCGCCACTTTATCCAA 61.403 57.895 0.00 0.00 0.00 3.53
313 323 4.803613 GCCGCCACTTTATCCAATAAAAAG 59.196 41.667 0.00 0.00 34.59 2.27
314 324 5.393678 GCCGCCACTTTATCCAATAAAAAGA 60.394 40.000 1.37 0.00 34.59 2.52
381 400 8.735315 TGTTACTTTACCATGACAAATATGTGG 58.265 33.333 0.00 0.00 40.74 4.17
382 401 6.207691 ACTTTACCATGACAAATATGTGGC 57.792 37.500 0.00 0.00 40.74 5.01
384 403 2.387757 ACCATGACAAATATGTGGCCC 58.612 47.619 0.00 0.00 40.74 5.80
407 426 2.476619 GCAGCTGTTGTACTGTGTACTG 59.523 50.000 16.64 0.00 36.26 2.74
411 430 1.067974 TGTTGTACTGTGTACTGCGCT 59.932 47.619 9.73 0.00 0.00 5.92
416 435 1.244816 ACTGTGTACTGCGCTGAGTA 58.755 50.000 21.92 12.40 0.00 2.59
426 445 1.202143 TGCGCTGAGTACATGACTACG 60.202 52.381 9.73 5.33 39.06 3.51
433 452 4.582869 TGAGTACATGACTACGTGGTACT 58.417 43.478 3.88 4.14 39.06 2.73
487 506 9.176460 TCTTTGATTCACATAATTCTGCACATA 57.824 29.630 0.00 0.00 0.00 2.29
501 520 5.219343 CTGCACATATGGAGATAGGAACA 57.781 43.478 7.80 0.00 46.84 3.18
504 523 5.104569 TGCACATATGGAGATAGGAACAACA 60.105 40.000 7.80 0.00 0.00 3.33
505 524 6.000219 GCACATATGGAGATAGGAACAACAT 59.000 40.000 7.80 0.00 0.00 2.71
506 525 7.161404 GCACATATGGAGATAGGAACAACATA 58.839 38.462 7.80 0.00 0.00 2.29
507 526 7.826252 GCACATATGGAGATAGGAACAACATAT 59.174 37.037 7.80 0.00 32.12 1.78
508 527 9.159364 CACATATGGAGATAGGAACAACATATG 57.841 37.037 16.01 16.01 45.87 1.78
510 529 9.948964 CATATGGAGATAGGAACAACATATGAA 57.051 33.333 10.38 0.00 44.46 2.57
513 532 8.681486 TGGAGATAGGAACAACATATGAATTG 57.319 34.615 10.38 7.11 0.00 2.32
514 533 8.493607 TGGAGATAGGAACAACATATGAATTGA 58.506 33.333 10.38 0.00 0.00 2.57
540 559 5.119931 TGACAGGAATACATGCACAAAAC 57.880 39.130 0.00 0.00 0.00 2.43
560 579 2.443255 ACAGAGGATTGGGAAACACTGT 59.557 45.455 0.00 0.00 33.47 3.55
562 581 4.003648 CAGAGGATTGGGAAACACTGTAC 58.996 47.826 0.00 0.00 0.00 2.90
567 586 5.301805 AGGATTGGGAAACACTGTACTTTTG 59.698 40.000 0.00 0.00 0.00 2.44
592 611 3.631250 ACTTGGGTGTTTGATTCACACT 58.369 40.909 4.70 0.00 43.55 3.55
595 614 5.654650 ACTTGGGTGTTTGATTCACACTTTA 59.345 36.000 4.70 0.00 43.55 1.85
601 620 4.036971 TGTTTGATTCACACTTTAACGGGG 59.963 41.667 4.70 0.00 0.00 5.73
605 624 5.806818 TGATTCACACTTTAACGGGGATAA 58.193 37.500 0.00 0.00 0.00 1.75
608 627 5.945466 TCACACTTTAACGGGGATAAAAC 57.055 39.130 0.00 0.00 0.00 2.43
610 629 6.005198 TCACACTTTAACGGGGATAAAACAT 58.995 36.000 0.00 0.00 0.00 2.71
619 638 4.632688 ACGGGGATAAAACATACAGAAACG 59.367 41.667 0.00 0.00 0.00 3.60
632 652 6.588756 ACATACAGAAACGTAATACACCAGTG 59.411 38.462 0.00 0.00 0.00 3.66
634 654 5.603596 ACAGAAACGTAATACACCAGTGAA 58.396 37.500 4.48 0.00 0.00 3.18
737 757 7.823745 TTTTCCTCTATTTCTGTTTTGCTCT 57.176 32.000 0.00 0.00 0.00 4.09
779 799 3.572255 TGAATAGTGCCACCAAAGGAAAC 59.428 43.478 0.00 0.00 0.00 2.78
852 872 6.814644 TGAATCAAATGAATGAATGCTTCCAC 59.185 34.615 0.00 0.00 32.06 4.02
980 1004 8.367911 ACTGTGTTTTTACTATGAGTCTGATGA 58.632 33.333 0.00 0.00 0.00 2.92
1039 1093 1.280421 GGCCTTGGTCAGATCTTCAGT 59.720 52.381 0.00 0.00 0.00 3.41
1182 1236 2.818132 CTCACTCTCCCCGATGGC 59.182 66.667 0.00 0.00 0.00 4.40
1200 1254 1.272147 GGCACCTTCCTCAACATTCCT 60.272 52.381 0.00 0.00 0.00 3.36
1455 1512 0.388907 CCAATTCCTTGGTTGCTGCG 60.389 55.000 0.00 0.00 45.90 5.18
1543 1600 3.099905 CTCAGAGGTGACAGGTATCCAA 58.900 50.000 0.00 0.00 0.00 3.53
1594 1651 1.937278 TGGAAAGTTGTACGCGTTGA 58.063 45.000 20.78 0.12 0.00 3.18
1624 1681 3.119029 TGGCCAGCTTTTGATATTTGAGC 60.119 43.478 0.00 0.00 0.00 4.26
1630 1687 4.095483 AGCTTTTGATATTTGAGCTGGACG 59.905 41.667 0.00 0.00 41.75 4.79
1651 1711 5.745227 ACGATGACCTTGTTATTTCATCCT 58.255 37.500 5.14 0.00 40.82 3.24
1687 1747 7.839680 ATTGACTCTTTGGGTGATTTAAGTT 57.160 32.000 0.00 0.00 0.00 2.66
1688 1748 7.654022 TTGACTCTTTGGGTGATTTAAGTTT 57.346 32.000 0.00 0.00 0.00 2.66
1692 1752 8.762481 ACTCTTTGGGTGATTTAAGTTTAGTT 57.238 30.769 0.00 0.00 0.00 2.24
1708 1768 1.606601 GTTCCTCAACCCTTGGCCC 60.607 63.158 0.00 0.00 0.00 5.80
1712 1775 3.589542 TCAACCCTTGGCCCCAGG 61.590 66.667 10.69 10.69 0.00 4.45
1954 2023 4.432741 GCTCCAAGTCCCTGCCCC 62.433 72.222 0.00 0.00 0.00 5.80
1958 2027 4.748144 CAAGTCCCTGCCCCCTGC 62.748 72.222 0.00 0.00 41.77 4.85
2012 2081 5.958380 TCTACTTCATGTGTGACTATCCCTT 59.042 40.000 0.00 0.00 33.11 3.95
2072 2141 4.407621 TGTATACAACGTCAGGAATGGGAT 59.592 41.667 2.20 0.00 0.00 3.85
2265 2341 6.715347 ACCAATTCTGCTTATGTTTATCCC 57.285 37.500 0.00 0.00 0.00 3.85
2281 2357 1.561643 TCCCAGTGACCTGTGATCTC 58.438 55.000 0.00 0.00 36.95 2.75
2290 2366 3.258372 TGACCTGTGATCTCAGTTGGTAC 59.742 47.826 20.33 9.31 34.02 3.34
2303 2379 3.866910 CAGTTGGTACGTTTGTGTGTACT 59.133 43.478 0.00 0.00 40.56 2.73
2305 2381 5.519566 CAGTTGGTACGTTTGTGTGTACTTA 59.480 40.000 0.00 0.00 40.56 2.24
2469 4039 4.468765 AGATCATGTTCACTGTGAGGAG 57.531 45.455 10.77 3.35 0.00 3.69
2501 4071 5.163353 TGTTGATGATAGGCCACGAAGATAA 60.163 40.000 5.01 0.00 0.00 1.75
2502 4072 5.745312 TGATGATAGGCCACGAAGATAAT 57.255 39.130 5.01 0.00 0.00 1.28
2503 4073 5.482006 TGATGATAGGCCACGAAGATAATG 58.518 41.667 5.01 0.00 0.00 1.90
2504 4074 5.245977 TGATGATAGGCCACGAAGATAATGA 59.754 40.000 5.01 0.00 0.00 2.57
2505 4075 5.745312 TGATAGGCCACGAAGATAATGAT 57.255 39.130 5.01 0.00 0.00 2.45
2506 4076 5.482006 TGATAGGCCACGAAGATAATGATG 58.518 41.667 5.01 0.00 0.00 3.07
2532 4104 3.478516 CGCGTTTCTGTTCTGAAAAGTTG 59.521 43.478 7.44 0.00 37.63 3.16
2587 4159 0.731417 CAGGAGCGATTTCTTGGCAG 59.269 55.000 0.00 0.00 0.00 4.85
2616 4188 2.666619 GCATCAACCTTTGCTGAAGACG 60.667 50.000 2.50 0.00 37.57 4.18
2625 4197 2.081212 GCTGAAGACGACGACGGTG 61.081 63.158 12.58 0.00 44.46 4.94
2636 4208 1.734477 CGACGGTGAGGTGAAGCTG 60.734 63.158 0.00 0.00 0.00 4.24
2655 4227 2.066262 TGACGCTTGGATTTCGTTCTC 58.934 47.619 0.00 0.00 36.50 2.87
2667 4239 5.290643 GGATTTCGTTCTCTGATCAGTCTTG 59.709 44.000 21.92 11.05 0.00 3.02
2681 4253 2.226674 CAGTCTTGCTACGTCTCAGTCA 59.773 50.000 0.00 0.00 0.00 3.41
2723 4296 8.496534 TCATAAAGATCCTACATCAAGATCCA 57.503 34.615 0.00 0.00 37.69 3.41
2756 4329 5.221891 TCTTTGATTCTTTCGTGCATAGC 57.778 39.130 0.00 0.00 0.00 2.97
2769 4342 1.065926 TGCATAGCCTGGTCTCAACAG 60.066 52.381 0.00 0.00 35.74 3.16
2770 4343 1.208052 GCATAGCCTGGTCTCAACAGA 59.792 52.381 0.00 0.00 38.20 3.41
2774 4347 3.515602 AGCCTGGTCTCAACAGAAAAT 57.484 42.857 0.00 0.00 38.20 1.82
2782 4355 4.083802 GGTCTCAACAGAAAATCCAACGAG 60.084 45.833 0.00 0.00 0.00 4.18
2795 4368 1.127951 CCAACGAGAAAAACGGGATCG 59.872 52.381 0.00 0.00 43.02 3.69
2796 4369 2.063266 CAACGAGAAAAACGGGATCGA 58.937 47.619 0.00 0.00 40.11 3.59
2797 4370 2.667473 ACGAGAAAAACGGGATCGAT 57.333 45.000 0.00 0.00 40.11 3.59
2798 4371 2.268298 ACGAGAAAAACGGGATCGATG 58.732 47.619 0.54 0.00 40.11 3.84
2799 4372 1.593006 CGAGAAAAACGGGATCGATGG 59.407 52.381 0.54 0.00 40.11 3.51
2836 4409 8.057536 AGTTACGAGATCTTCTTTCACATAGT 57.942 34.615 0.00 0.00 0.00 2.12
2837 4410 9.175312 AGTTACGAGATCTTCTTTCACATAGTA 57.825 33.333 0.00 0.00 0.00 1.82
2838 4411 9.440784 GTTACGAGATCTTCTTTCACATAGTAG 57.559 37.037 0.00 0.00 0.00 2.57
2879 4452 0.239879 GACTCGCCCTCAGATCGATC 59.760 60.000 17.91 17.91 0.00 3.69
2884 4457 1.523154 GCCCTCAGATCGATCGCTCT 61.523 60.000 19.33 15.41 0.00 4.09
2953 4526 2.671619 CTCTTGCGGCGGGGAAAA 60.672 61.111 9.78 0.00 0.00 2.29
2954 4527 2.203365 TCTTGCGGCGGGGAAAAA 60.203 55.556 9.78 0.00 0.00 1.94
2982 4555 3.383162 AGACCAGGTCTCACGGATT 57.617 52.632 17.31 0.00 38.71 3.01
2983 4556 2.526888 AGACCAGGTCTCACGGATTA 57.473 50.000 17.31 0.00 38.71 1.75
2984 4557 2.379972 AGACCAGGTCTCACGGATTAG 58.620 52.381 17.31 0.00 38.71 1.73
2985 4558 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
2986 4559 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
2987 4560 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
2988 4561 1.115467 AGGTCTCACGGATTAGCAGG 58.885 55.000 0.00 0.00 0.00 4.85
2989 4562 0.824759 GGTCTCACGGATTAGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
2990 4563 1.471676 GGTCTCACGGATTAGCAGGTG 60.472 57.143 0.00 0.00 0.00 4.00
2991 4564 1.476891 GTCTCACGGATTAGCAGGTGA 59.523 52.381 0.00 0.00 37.77 4.02
2993 4566 1.847328 TCACGGATTAGCAGGTGAGA 58.153 50.000 0.00 0.00 34.71 3.27
2994 4567 1.476891 TCACGGATTAGCAGGTGAGAC 59.523 52.381 0.00 0.00 34.71 3.36
2995 4568 0.824759 ACGGATTAGCAGGTGAGACC 59.175 55.000 0.00 0.00 38.99 3.85
2996 4569 0.105039 CGGATTAGCAGGTGAGACCC 59.895 60.000 0.00 0.00 39.75 4.46
2997 4570 1.204146 GGATTAGCAGGTGAGACCCA 58.796 55.000 0.00 0.00 39.75 4.51
2998 4571 1.771255 GGATTAGCAGGTGAGACCCAT 59.229 52.381 0.00 0.00 39.75 4.00
2999 4572 2.224402 GGATTAGCAGGTGAGACCCATC 60.224 54.545 0.00 0.00 39.75 3.51
3000 4573 1.204146 TTAGCAGGTGAGACCCATCC 58.796 55.000 0.00 0.00 39.75 3.51
3001 4574 0.339859 TAGCAGGTGAGACCCATCCT 59.660 55.000 0.00 0.00 39.75 3.24
3002 4575 1.222936 GCAGGTGAGACCCATCCTG 59.777 63.158 5.79 5.79 39.75 3.86
3003 4576 1.267574 GCAGGTGAGACCCATCCTGA 61.268 60.000 13.26 0.00 42.00 3.86
3004 4577 1.504912 CAGGTGAGACCCATCCTGAT 58.495 55.000 4.28 0.00 42.00 2.90
3005 4578 2.682594 CAGGTGAGACCCATCCTGATA 58.317 52.381 4.28 0.00 42.00 2.15
3006 4579 3.041211 CAGGTGAGACCCATCCTGATAA 58.959 50.000 4.28 0.00 42.00 1.75
3007 4580 3.455910 CAGGTGAGACCCATCCTGATAAA 59.544 47.826 4.28 0.00 42.00 1.40
3008 4581 4.103785 CAGGTGAGACCCATCCTGATAAAT 59.896 45.833 4.28 0.00 42.00 1.40
3009 4582 4.103785 AGGTGAGACCCATCCTGATAAATG 59.896 45.833 0.00 0.00 39.75 2.32
3010 4583 4.103153 GGTGAGACCCATCCTGATAAATGA 59.897 45.833 0.00 0.00 30.04 2.57
3011 4584 5.059833 GTGAGACCCATCCTGATAAATGAC 58.940 45.833 0.00 0.00 0.00 3.06
3012 4585 4.721274 TGAGACCCATCCTGATAAATGACA 59.279 41.667 0.00 0.00 0.00 3.58
3013 4586 5.041191 AGACCCATCCTGATAAATGACAC 57.959 43.478 0.00 0.00 0.00 3.67
3014 4587 3.808728 ACCCATCCTGATAAATGACACG 58.191 45.455 0.00 0.00 0.00 4.49
3015 4588 3.199946 ACCCATCCTGATAAATGACACGT 59.800 43.478 0.00 0.00 0.00 4.49
3016 4589 3.561310 CCCATCCTGATAAATGACACGTG 59.439 47.826 15.48 15.48 0.00 4.49
3017 4590 4.441792 CCATCCTGATAAATGACACGTGA 58.558 43.478 25.01 0.00 0.00 4.35
3018 4591 4.271049 CCATCCTGATAAATGACACGTGAC 59.729 45.833 25.01 17.68 0.00 3.67
3019 4592 4.529109 TCCTGATAAATGACACGTGACA 57.471 40.909 25.01 23.44 0.00 3.58
3020 4593 5.084818 TCCTGATAAATGACACGTGACAT 57.915 39.130 24.49 24.49 32.16 3.06
3021 4594 5.487433 TCCTGATAAATGACACGTGACATT 58.513 37.500 31.25 31.25 40.91 2.71
3022 4595 5.580691 TCCTGATAAATGACACGTGACATTC 59.419 40.000 34.62 26.16 38.93 2.67
3023 4596 5.351189 CCTGATAAATGACACGTGACATTCA 59.649 40.000 34.62 28.38 38.93 2.57
3024 4597 6.037500 CCTGATAAATGACACGTGACATTCAT 59.962 38.462 34.62 29.26 38.93 2.57
3025 4598 7.224557 CCTGATAAATGACACGTGACATTCATA 59.775 37.037 34.62 26.82 38.93 2.15
3026 4599 8.485976 TGATAAATGACACGTGACATTCATAA 57.514 30.769 34.62 22.74 38.93 1.90
3027 4600 8.940952 TGATAAATGACACGTGACATTCATAAA 58.059 29.630 34.62 20.60 38.93 1.40
3028 4601 9.935682 GATAAATGACACGTGACATTCATAAAT 57.064 29.630 34.62 24.22 38.93 1.40
3029 4602 9.935682 ATAAATGACACGTGACATTCATAAATC 57.064 29.630 34.62 14.98 38.93 2.17
3030 4603 6.983474 ATGACACGTGACATTCATAAATCA 57.017 33.333 24.49 12.61 0.00 2.57
3031 4604 6.164408 TGACACGTGACATTCATAAATCAC 57.836 37.500 25.01 0.00 0.00 3.06
3032 4605 5.698545 TGACACGTGACATTCATAAATCACA 59.301 36.000 25.01 0.00 0.00 3.58
3033 4606 6.203723 TGACACGTGACATTCATAAATCACAA 59.796 34.615 25.01 0.00 0.00 3.33
3034 4607 6.964908 ACACGTGACATTCATAAATCACAAA 58.035 32.000 25.01 0.00 0.00 2.83
3035 4608 7.077605 ACACGTGACATTCATAAATCACAAAG 58.922 34.615 25.01 0.00 0.00 2.77
3036 4609 6.032775 CACGTGACATTCATAAATCACAAAGC 59.967 38.462 10.90 0.00 0.00 3.51
3037 4610 6.085573 CGTGACATTCATAAATCACAAAGCA 58.914 36.000 4.31 0.00 0.00 3.91
3038 4611 6.748658 CGTGACATTCATAAATCACAAAGCAT 59.251 34.615 4.31 0.00 0.00 3.79
3039 4612 7.274033 CGTGACATTCATAAATCACAAAGCATT 59.726 33.333 4.31 0.00 0.00 3.56
3040 4613 8.928733 GTGACATTCATAAATCACAAAGCATTT 58.071 29.630 0.00 0.00 40.26 2.32
3043 4616 9.369904 ACATTCATAAATCACAAAGCATTTACC 57.630 29.630 0.00 0.00 35.03 2.85
3044 4617 8.819974 CATTCATAAATCACAAAGCATTTACCC 58.180 33.333 0.00 0.00 35.03 3.69
3045 4618 6.872920 TCATAAATCACAAAGCATTTACCCC 58.127 36.000 0.00 0.00 35.03 4.95
3046 4619 6.438741 TCATAAATCACAAAGCATTTACCCCA 59.561 34.615 0.00 0.00 35.03 4.96
3047 4620 4.535526 AATCACAAAGCATTTACCCCAC 57.464 40.909 0.00 0.00 35.03 4.61
3048 4621 2.243810 TCACAAAGCATTTACCCCACC 58.756 47.619 0.00 0.00 35.03 4.61
3049 4622 1.275010 CACAAAGCATTTACCCCACCC 59.725 52.381 0.00 0.00 35.03 4.61
3050 4623 0.901827 CAAAGCATTTACCCCACCCC 59.098 55.000 0.00 0.00 35.03 4.95
3051 4624 0.489567 AAAGCATTTACCCCACCCCA 59.510 50.000 0.00 0.00 35.86 4.96
3052 4625 0.715987 AAGCATTTACCCCACCCCAT 59.284 50.000 0.00 0.00 0.00 4.00
3053 4626 0.261696 AGCATTTACCCCACCCCATC 59.738 55.000 0.00 0.00 0.00 3.51
3054 4627 0.261696 GCATTTACCCCACCCCATCT 59.738 55.000 0.00 0.00 0.00 2.90
3055 4628 2.028996 GCATTTACCCCACCCCATCTG 61.029 57.143 0.00 0.00 0.00 2.90
3056 4629 1.568597 CATTTACCCCACCCCATCTGA 59.431 52.381 0.00 0.00 0.00 3.27
3057 4630 1.761711 TTTACCCCACCCCATCTGAA 58.238 50.000 0.00 0.00 0.00 3.02
3058 4631 1.761711 TTACCCCACCCCATCTGAAA 58.238 50.000 0.00 0.00 0.00 2.69
3059 4632 1.994399 TACCCCACCCCATCTGAAAT 58.006 50.000 0.00 0.00 0.00 2.17
3060 4633 0.631212 ACCCCACCCCATCTGAAATC 59.369 55.000 0.00 0.00 0.00 2.17
3061 4634 0.630673 CCCCACCCCATCTGAAATCA 59.369 55.000 0.00 0.00 0.00 2.57
3062 4635 1.410648 CCCCACCCCATCTGAAATCAG 60.411 57.143 3.99 3.99 45.08 2.90
3063 4636 1.410648 CCCACCCCATCTGAAATCAGG 60.411 57.143 10.37 0.00 43.91 3.86
3064 4637 1.410648 CCACCCCATCTGAAATCAGGG 60.411 57.143 10.37 7.17 43.91 4.45
3065 4638 0.929244 ACCCCATCTGAAATCAGGGG 59.071 55.000 18.94 18.94 43.99 4.79
3066 4639 3.835810 CCCATCTGAAATCAGGGGG 57.164 57.895 19.68 19.68 45.50 5.40
3083 4656 3.584733 GGGGGAACAGATTAGATGCTT 57.415 47.619 0.00 0.00 0.00 3.91
3084 4657 3.903467 GGGGGAACAGATTAGATGCTTT 58.097 45.455 0.00 0.00 0.00 3.51
3085 4658 3.633986 GGGGGAACAGATTAGATGCTTTG 59.366 47.826 0.00 0.00 0.00 2.77
3086 4659 4.273318 GGGGAACAGATTAGATGCTTTGT 58.727 43.478 0.00 0.00 0.00 2.83
3087 4660 4.096984 GGGGAACAGATTAGATGCTTTGTG 59.903 45.833 0.00 0.00 0.00 3.33
3088 4661 4.943705 GGGAACAGATTAGATGCTTTGTGA 59.056 41.667 0.00 0.00 0.00 3.58
3089 4662 5.591877 GGGAACAGATTAGATGCTTTGTGAT 59.408 40.000 0.00 0.00 0.00 3.06
3090 4663 6.096001 GGGAACAGATTAGATGCTTTGTGATT 59.904 38.462 0.00 0.00 0.00 2.57
3091 4664 7.363268 GGGAACAGATTAGATGCTTTGTGATTT 60.363 37.037 0.00 0.00 0.00 2.17
3092 4665 7.487189 GGAACAGATTAGATGCTTTGTGATTTG 59.513 37.037 0.00 0.00 0.00 2.32
3093 4666 7.458409 ACAGATTAGATGCTTTGTGATTTGT 57.542 32.000 0.00 0.00 0.00 2.83
3094 4667 7.310664 ACAGATTAGATGCTTTGTGATTTGTG 58.689 34.615 0.00 0.00 0.00 3.33
3095 4668 7.175467 ACAGATTAGATGCTTTGTGATTTGTGA 59.825 33.333 0.00 0.00 0.00 3.58
3096 4669 8.024865 CAGATTAGATGCTTTGTGATTTGTGAA 58.975 33.333 0.00 0.00 0.00 3.18
3097 4670 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
3098 4671 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
3099 4672 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
3100 4673 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
3101 4674 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
3102 4675 3.998341 GCTTTGTGATTTGTGAATGCCAT 59.002 39.130 0.00 0.00 0.00 4.40
3103 4676 5.170021 GCTTTGTGATTTGTGAATGCCATA 58.830 37.500 0.00 0.00 0.00 2.74
3104 4677 5.813672 GCTTTGTGATTTGTGAATGCCATAT 59.186 36.000 0.00 0.00 0.00 1.78
3105 4678 6.237996 GCTTTGTGATTTGTGAATGCCATATG 60.238 38.462 0.00 0.00 0.00 1.78
3106 4679 5.918426 TGTGATTTGTGAATGCCATATGT 57.082 34.783 1.24 0.00 0.00 2.29
3107 4680 5.893687 TGTGATTTGTGAATGCCATATGTC 58.106 37.500 1.24 0.00 0.00 3.06
3108 4681 5.418209 TGTGATTTGTGAATGCCATATGTCA 59.582 36.000 1.24 0.00 0.00 3.58
3109 4682 6.097129 TGTGATTTGTGAATGCCATATGTCAT 59.903 34.615 1.24 0.00 0.00 3.06
3110 4683 6.639686 GTGATTTGTGAATGCCATATGTCATC 59.360 38.462 0.00 0.00 0.00 2.92
3111 4684 5.518848 TTTGTGAATGCCATATGTCATCC 57.481 39.130 0.00 0.00 0.00 3.51
3112 4685 4.167652 TGTGAATGCCATATGTCATCCA 57.832 40.909 0.00 0.00 0.00 3.41
3113 4686 4.732065 TGTGAATGCCATATGTCATCCAT 58.268 39.130 0.00 0.00 37.58 3.41
3114 4687 4.763279 TGTGAATGCCATATGTCATCCATC 59.237 41.667 0.00 0.00 34.86 3.51
3115 4688 4.763279 GTGAATGCCATATGTCATCCATCA 59.237 41.667 0.00 0.00 34.86 3.07
3116 4689 5.242171 GTGAATGCCATATGTCATCCATCAA 59.758 40.000 0.00 0.00 34.86 2.57
3117 4690 5.475564 TGAATGCCATATGTCATCCATCAAG 59.524 40.000 0.00 0.00 34.86 3.02
3118 4691 4.710313 TGCCATATGTCATCCATCAAGA 57.290 40.909 1.24 0.00 34.86 3.02
3119 4692 4.392047 TGCCATATGTCATCCATCAAGAC 58.608 43.478 1.24 0.00 34.86 3.01
3120 4693 3.434641 GCCATATGTCATCCATCAAGACG 59.565 47.826 1.24 0.00 34.86 4.18
3121 4694 3.999001 CCATATGTCATCCATCAAGACGG 59.001 47.826 1.24 0.00 34.86 4.79
3122 4695 2.627515 ATGTCATCCATCAAGACGGG 57.372 50.000 0.00 0.00 35.09 5.28
3123 4696 1.275666 TGTCATCCATCAAGACGGGT 58.724 50.000 0.00 0.00 35.09 5.28
3124 4697 1.207089 TGTCATCCATCAAGACGGGTC 59.793 52.381 0.00 0.00 35.09 4.46
3125 4698 1.482593 GTCATCCATCAAGACGGGTCT 59.517 52.381 0.00 0.00 42.75 3.85
3126 4699 1.757118 TCATCCATCAAGACGGGTCTC 59.243 52.381 1.16 0.00 39.39 3.36
3127 4700 1.482182 CATCCATCAAGACGGGTCTCA 59.518 52.381 1.16 0.00 39.39 3.27
3128 4701 0.895530 TCCATCAAGACGGGTCTCAC 59.104 55.000 1.16 0.00 39.39 3.51
3129 4702 0.108138 CCATCAAGACGGGTCTCACC 60.108 60.000 1.16 0.00 39.39 4.02
3130 4703 0.898320 CATCAAGACGGGTCTCACCT 59.102 55.000 1.16 0.00 39.39 4.00
3139 4712 3.753294 CGGGTCTCACCTGCTTTATAT 57.247 47.619 0.00 0.00 37.90 0.86
3140 4713 3.393800 CGGGTCTCACCTGCTTTATATG 58.606 50.000 0.00 0.00 37.90 1.78
3141 4714 3.069586 CGGGTCTCACCTGCTTTATATGA 59.930 47.826 0.00 0.00 37.90 2.15
3142 4715 4.636249 GGGTCTCACCTGCTTTATATGAG 58.364 47.826 0.00 0.00 38.64 2.90
3143 4716 4.345257 GGGTCTCACCTGCTTTATATGAGA 59.655 45.833 0.00 0.00 42.63 3.27
3145 4718 5.537300 TCTCACCTGCTTTATATGAGACC 57.463 43.478 0.00 0.00 40.59 3.85
3146 4719 5.211973 TCTCACCTGCTTTATATGAGACCT 58.788 41.667 0.00 0.00 40.59 3.85
3147 4720 5.069648 TCTCACCTGCTTTATATGAGACCTG 59.930 44.000 0.00 0.00 40.59 4.00
3148 4721 4.101585 TCACCTGCTTTATATGAGACCTGG 59.898 45.833 0.00 0.00 0.00 4.45
3149 4722 4.040755 ACCTGCTTTATATGAGACCTGGT 58.959 43.478 0.00 0.00 0.00 4.00
3150 4723 4.101741 ACCTGCTTTATATGAGACCTGGTC 59.898 45.833 19.20 19.20 0.00 4.02
3151 4724 4.503991 CCTGCTTTATATGAGACCTGGTCC 60.504 50.000 22.81 14.59 32.18 4.46
3152 4725 3.391296 TGCTTTATATGAGACCTGGTCCC 59.609 47.826 22.81 12.58 32.18 4.46
3153 4726 3.391296 GCTTTATATGAGACCTGGTCCCA 59.609 47.826 22.81 18.38 32.18 4.37
3154 4727 4.042187 GCTTTATATGAGACCTGGTCCCAT 59.958 45.833 24.51 24.51 35.33 4.00
3155 4728 5.555017 CTTTATATGAGACCTGGTCCCATG 58.445 45.833 27.99 11.51 32.35 3.66
3156 4729 1.806496 TATGAGACCTGGTCCCATGG 58.194 55.000 27.99 4.14 32.35 3.66
3157 4730 1.639635 ATGAGACCTGGTCCCATGGC 61.640 60.000 21.33 6.73 30.10 4.40
3158 4731 3.017581 AGACCTGGTCCCATGGCC 61.018 66.667 22.81 3.46 32.18 5.36
3159 4732 4.489771 GACCTGGTCCCATGGCCG 62.490 72.222 16.14 0.00 0.00 6.13
3162 4735 3.492353 CTGGTCCCATGGCCGGAT 61.492 66.667 5.05 0.00 33.04 4.18
3163 4736 3.482232 CTGGTCCCATGGCCGGATC 62.482 68.421 5.05 0.00 33.04 3.36
3164 4737 3.171388 GGTCCCATGGCCGGATCT 61.171 66.667 5.05 0.00 0.00 2.75
3165 4738 2.427753 GTCCCATGGCCGGATCTC 59.572 66.667 5.05 0.00 0.00 2.75
3166 4739 2.849162 TCCCATGGCCGGATCTCC 60.849 66.667 5.05 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.665459 ACTTAGGTTGTGCATCAGAGATAC 58.335 41.667 0.00 0.00 0.00 2.24
18 19 2.558359 GGCTGAAACTTAGGTTGTGCAT 59.442 45.455 0.00 0.00 35.63 3.96
19 20 1.953686 GGCTGAAACTTAGGTTGTGCA 59.046 47.619 6.26 0.00 35.63 4.57
21 22 3.214328 ACAGGCTGAAACTTAGGTTGTG 58.786 45.455 23.66 0.00 35.63 3.33
22 23 3.577805 ACAGGCTGAAACTTAGGTTGT 57.422 42.857 23.66 0.00 35.63 3.32
25 26 4.536489 AGGAATACAGGCTGAAACTTAGGT 59.464 41.667 23.66 0.00 0.00 3.08
28 29 6.121776 TCAAGGAATACAGGCTGAAACTTA 57.878 37.500 23.66 2.45 0.00 2.24
29 30 4.985538 TCAAGGAATACAGGCTGAAACTT 58.014 39.130 23.66 13.98 0.00 2.66
30 31 4.640771 TCAAGGAATACAGGCTGAAACT 57.359 40.909 23.66 8.68 0.00 2.66
63 64 9.155053 GTAAAATGTGTAGAAAAAGAAGTGTCG 57.845 33.333 0.00 0.00 0.00 4.35
88 89 7.251321 CCAGAGGGCATTCTATCTATTAAGT 57.749 40.000 0.00 0.00 0.00 2.24
129 130 5.318349 CACGCCGTCGACTTTAATTAAAAT 58.682 37.500 14.70 1.67 39.41 1.82
130 131 4.700332 CACGCCGTCGACTTTAATTAAAA 58.300 39.130 14.70 0.00 39.41 1.52
131 132 3.423384 GCACGCCGTCGACTTTAATTAAA 60.423 43.478 14.70 10.16 39.41 1.52
132 133 2.092524 GCACGCCGTCGACTTTAATTAA 59.907 45.455 14.70 0.00 39.41 1.40
139 140 1.226603 GATAGCACGCCGTCGACTT 60.227 57.895 14.70 0.00 39.41 3.01
184 192 3.565482 TGAAGGAATTGTGCTGTCAGTTC 59.435 43.478 0.93 0.00 34.70 3.01
208 216 3.747099 AGCAACATGAGTATGCGAAAC 57.253 42.857 0.00 0.00 44.60 2.78
211 220 4.058721 ACATAGCAACATGAGTATGCGA 57.941 40.909 0.00 1.34 44.60 5.10
213 222 4.261322 CCCAACATAGCAACATGAGTATGC 60.261 45.833 0.00 4.57 37.85 3.14
224 233 7.398829 TGTAACTAGAAATCCCAACATAGCAA 58.601 34.615 0.00 0.00 0.00 3.91
229 238 6.636454 TCCTGTAACTAGAAATCCCAACAT 57.364 37.500 0.00 0.00 0.00 2.71
230 239 6.442541 TTCCTGTAACTAGAAATCCCAACA 57.557 37.500 0.00 0.00 0.00 3.33
231 240 6.374613 CCTTTCCTGTAACTAGAAATCCCAAC 59.625 42.308 0.00 0.00 0.00 3.77
236 246 8.884726 GTGATTCCTTTCCTGTAACTAGAAATC 58.115 37.037 0.00 0.00 0.00 2.17
248 258 4.789807 AGGATCATGTGATTCCTTTCCTG 58.210 43.478 0.00 0.00 34.37 3.86
259 269 7.453393 ACTAAAACTGAAAGAGGATCATGTGA 58.547 34.615 0.00 0.00 37.82 3.58
265 275 6.456181 CGCATGACTAAAACTGAAAGAGGATC 60.456 42.308 0.00 0.00 37.43 3.36
266 276 5.352569 CGCATGACTAAAACTGAAAGAGGAT 59.647 40.000 0.00 0.00 37.43 3.24
267 277 4.690748 CGCATGACTAAAACTGAAAGAGGA 59.309 41.667 0.00 0.00 37.43 3.71
268 278 4.670221 GCGCATGACTAAAACTGAAAGAGG 60.670 45.833 0.30 0.00 37.43 3.69
269 279 4.398247 GCGCATGACTAAAACTGAAAGAG 58.602 43.478 0.30 0.00 37.43 2.85
290 300 4.379339 TTTTATTGGATAAAGTGGCGGC 57.621 40.909 0.00 0.00 36.23 6.53
291 301 6.202516 TCTTTTTATTGGATAAAGTGGCGG 57.797 37.500 0.00 0.00 36.23 6.13
292 302 8.702163 ATTTCTTTTTATTGGATAAAGTGGCG 57.298 30.769 0.00 0.00 36.23 5.69
344 363 8.205512 TCATGGTAAAGTAACAACTGTGACTAA 58.794 33.333 0.07 0.00 38.78 2.24
348 367 6.350103 TGTCATGGTAAAGTAACAACTGTGA 58.650 36.000 0.00 0.00 0.00 3.58
350 369 7.633193 TTTGTCATGGTAAAGTAACAACTGT 57.367 32.000 0.00 0.00 0.00 3.55
377 396 4.208403 AACAGCTGCAGGGCCACA 62.208 61.111 17.12 2.02 0.00 4.17
379 398 2.828256 TACAACAGCTGCAGGGCCA 61.828 57.895 17.12 0.00 0.00 5.36
381 400 1.302832 AGTACAACAGCTGCAGGGC 60.303 57.895 17.12 2.13 0.00 5.19
382 401 0.250467 ACAGTACAACAGCTGCAGGG 60.250 55.000 17.12 3.13 36.26 4.45
384 403 1.586422 ACACAGTACAACAGCTGCAG 58.414 50.000 15.27 10.11 36.26 4.41
407 426 1.202154 ACGTAGTCATGTACTCAGCGC 60.202 52.381 0.00 0.00 29.74 5.92
411 430 4.582869 AGTACCACGTAGTCATGTACTCA 58.417 43.478 0.00 0.00 40.82 3.41
416 435 3.076621 TCGAAGTACCACGTAGTCATGT 58.923 45.455 0.00 0.00 41.61 3.21
426 445 6.385033 AGTACAACTACATTCGAAGTACCAC 58.615 40.000 14.43 2.85 32.88 4.16
433 452 9.941664 GCTATAACTAGTACAACTACATTCGAA 57.058 33.333 0.00 0.00 0.00 3.71
470 489 7.683437 ATCTCCATATGTGCAGAATTATGTG 57.317 36.000 1.46 0.00 0.00 3.21
487 506 9.293404 CAATTCATATGTTGTTCCTATCTCCAT 57.707 33.333 1.90 0.00 0.00 3.41
506 525 9.811995 CATGTATTCCTGTCAATTTCAATTCAT 57.188 29.630 0.00 0.00 0.00 2.57
507 526 7.760794 GCATGTATTCCTGTCAATTTCAATTCA 59.239 33.333 0.00 0.00 0.00 2.57
508 527 7.760794 TGCATGTATTCCTGTCAATTTCAATTC 59.239 33.333 0.00 0.00 0.00 2.17
510 529 7.037438 GTGCATGTATTCCTGTCAATTTCAAT 58.963 34.615 0.00 0.00 0.00 2.57
511 530 6.015603 TGTGCATGTATTCCTGTCAATTTCAA 60.016 34.615 0.00 0.00 0.00 2.69
512 531 5.476254 TGTGCATGTATTCCTGTCAATTTCA 59.524 36.000 0.00 0.00 0.00 2.69
513 532 5.953183 TGTGCATGTATTCCTGTCAATTTC 58.047 37.500 0.00 0.00 0.00 2.17
514 533 5.981088 TGTGCATGTATTCCTGTCAATTT 57.019 34.783 0.00 0.00 0.00 1.82
528 547 3.006110 CCAATCCTCTGTTTTGTGCATGT 59.994 43.478 0.00 0.00 0.00 3.21
529 548 3.581755 CCAATCCTCTGTTTTGTGCATG 58.418 45.455 0.00 0.00 0.00 4.06
530 549 2.564062 CCCAATCCTCTGTTTTGTGCAT 59.436 45.455 0.00 0.00 0.00 3.96
540 559 3.146104 ACAGTGTTTCCCAATCCTCTG 57.854 47.619 0.00 0.00 0.00 3.35
560 579 5.477291 TCAAACACCCAAGTTCACAAAAGTA 59.523 36.000 0.00 0.00 0.00 2.24
562 581 4.815269 TCAAACACCCAAGTTCACAAAAG 58.185 39.130 0.00 0.00 0.00 2.27
567 586 4.142271 TGTGAATCAAACACCCAAGTTCAC 60.142 41.667 8.04 8.04 42.41 3.18
592 611 8.513774 GTTTCTGTATGTTTTATCCCCGTTAAA 58.486 33.333 0.00 0.00 0.00 1.52
595 614 5.122711 CGTTTCTGTATGTTTTATCCCCGTT 59.877 40.000 0.00 0.00 0.00 4.44
605 624 7.658575 ACTGGTGTATTACGTTTCTGTATGTTT 59.341 33.333 0.00 0.00 0.00 2.83
608 627 6.809689 TCACTGGTGTATTACGTTTCTGTATG 59.190 38.462 0.00 0.00 0.00 2.39
610 629 6.330004 TCACTGGTGTATTACGTTTCTGTA 57.670 37.500 0.00 0.00 0.00 2.74
647 667 6.126825 ACAATCCACTCAGATCTCTTTGCTAT 60.127 38.462 0.00 0.00 0.00 2.97
657 677 8.304596 TCGGTAATATTACAATCCACTCAGATC 58.695 37.037 23.59 3.98 35.37 2.75
756 776 2.790433 TCCTTTGGTGGCACTATTCAC 58.210 47.619 18.45 0.00 0.00 3.18
779 799 3.007635 GGAACCCGTTGAAATAGGACAG 58.992 50.000 0.00 0.00 0.00 3.51
788 808 1.698506 AAATGCAGGAACCCGTTGAA 58.301 45.000 0.00 0.00 0.00 2.69
848 868 3.773418 TCAACGTATTCCTTTGGTGGA 57.227 42.857 0.00 0.00 0.00 4.02
852 872 5.043189 GGAAGTTCAACGTATTCCTTTGG 57.957 43.478 5.01 0.00 38.53 3.28
972 996 5.290643 GCAGTCTACAGAAATGTCATCAGAC 59.709 44.000 3.69 3.69 45.19 3.51
980 1004 4.880120 CCATGATGCAGTCTACAGAAATGT 59.120 41.667 0.00 0.00 0.00 2.71
1039 1093 0.326238 ATAAGGCCCAGGAGTTCCGA 60.326 55.000 0.00 0.00 42.08 4.55
1182 1236 2.224867 ACCAGGAATGTTGAGGAAGGTG 60.225 50.000 0.00 0.00 0.00 4.00
1594 1651 2.983725 AAAAGCTGGCCAACTCCGCT 62.984 55.000 9.60 10.09 37.50 5.52
1600 1657 4.819769 TCAAATATCAAAAGCTGGCCAAC 58.180 39.130 7.01 0.92 0.00 3.77
1624 1681 4.935205 TGAAATAACAAGGTCATCGTCCAG 59.065 41.667 0.00 0.00 0.00 3.86
1630 1687 6.538742 TCGAAGGATGAAATAACAAGGTCATC 59.461 38.462 4.31 4.31 43.67 2.92
1651 1711 5.582269 CCAAAGAGTCAATTATGCTCTCGAA 59.418 40.000 6.20 0.00 38.35 3.71
1687 1747 1.074889 GGCCAAGGGTTGAGGAACTAA 59.925 52.381 0.00 0.00 41.55 2.24
1688 1748 0.696501 GGCCAAGGGTTGAGGAACTA 59.303 55.000 0.00 0.00 41.55 2.24
1692 1752 3.264845 GGGGCCAAGGGTTGAGGA 61.265 66.667 4.39 0.00 0.00 3.71
1708 1768 5.044846 CCCTTATAGTAAATGGATCCCCTGG 60.045 48.000 9.90 0.00 0.00 4.45
1712 1775 6.954352 ACTCCCTTATAGTAAATGGATCCC 57.046 41.667 9.90 0.00 0.00 3.85
1958 2027 4.334759 CCTCTTGGTATTCACTGCATTCTG 59.665 45.833 0.00 0.00 0.00 3.02
2072 2141 4.223477 TCTCTGACATCAATGGTGTGATCA 59.777 41.667 2.87 0.00 36.04 2.92
2156 2228 2.931969 TGCTTCGTTGATCACATAGCTG 59.068 45.455 15.28 0.00 0.00 4.24
2281 2357 3.866910 AGTACACACAAACGTACCAACTG 59.133 43.478 0.00 0.00 39.03 3.16
2290 2366 8.025243 ACATAGGATTTAAGTACACACAAACG 57.975 34.615 0.00 0.00 0.00 3.60
2441 4011 5.896106 TCACAGTGAACATGATCTAGGAGAT 59.104 40.000 0.00 0.00 37.73 2.75
2469 4039 2.205074 CCTATCATCAACACGGTGCTC 58.795 52.381 8.30 0.00 0.00 4.26
2501 4071 2.380084 ACAGAAACGCGGTACATCAT 57.620 45.000 12.47 0.00 0.00 2.45
2502 4072 2.063266 GAACAGAAACGCGGTACATCA 58.937 47.619 12.47 0.00 0.00 3.07
2503 4073 2.092211 CAGAACAGAAACGCGGTACATC 59.908 50.000 12.47 0.00 0.00 3.06
2504 4074 2.066262 CAGAACAGAAACGCGGTACAT 58.934 47.619 12.47 0.00 0.00 2.29
2505 4075 1.067364 TCAGAACAGAAACGCGGTACA 59.933 47.619 12.47 0.00 0.00 2.90
2506 4076 1.774639 TCAGAACAGAAACGCGGTAC 58.225 50.000 12.47 0.09 0.00 3.34
2532 4104 7.148457 GCTAACAGTACAGTACCAAATTCTTCC 60.148 40.741 7.13 0.00 0.00 3.46
2565 4137 1.936547 GCCAAGAAATCGCTCCTGTAG 59.063 52.381 0.00 0.00 0.00 2.74
2616 4188 1.733399 GCTTCACCTCACCGTCGTC 60.733 63.158 0.00 0.00 0.00 4.20
2636 4208 2.092838 CAGAGAACGAAATCCAAGCGTC 59.907 50.000 0.00 0.00 37.26 5.19
2647 4219 3.256879 AGCAAGACTGATCAGAGAACGAA 59.743 43.478 29.27 0.00 0.00 3.85
2655 4227 3.127721 TGAGACGTAGCAAGACTGATCAG 59.872 47.826 21.37 21.37 0.00 2.90
2696 4268 9.956640 GGATCTTGATGTAGGATCTTTATGAAT 57.043 33.333 0.00 0.00 40.65 2.57
2707 4279 8.717717 AGAAATTGTATGGATCTTGATGTAGGA 58.282 33.333 0.00 0.00 0.00 2.94
2756 4329 3.754965 TGGATTTTCTGTTGAGACCAGG 58.245 45.455 0.00 0.00 0.00 4.45
2769 4342 3.978855 CCCGTTTTTCTCGTTGGATTTTC 59.021 43.478 0.00 0.00 0.00 2.29
2770 4343 3.633065 TCCCGTTTTTCTCGTTGGATTTT 59.367 39.130 0.00 0.00 0.00 1.82
2774 4347 2.419667 GATCCCGTTTTTCTCGTTGGA 58.580 47.619 0.00 0.00 0.00 3.53
2782 4355 2.032680 TCCCATCGATCCCGTTTTTC 57.967 50.000 0.00 0.00 37.05 2.29
2795 4368 2.938956 AACTCATTCCGGATCCCATC 57.061 50.000 4.15 0.00 0.00 3.51
2796 4369 2.037251 CGTAACTCATTCCGGATCCCAT 59.963 50.000 4.15 0.00 0.00 4.00
2797 4370 1.411246 CGTAACTCATTCCGGATCCCA 59.589 52.381 4.15 0.00 0.00 4.37
2798 4371 1.684983 TCGTAACTCATTCCGGATCCC 59.315 52.381 4.15 0.00 0.00 3.85
2799 4372 2.621998 TCTCGTAACTCATTCCGGATCC 59.378 50.000 4.15 0.00 0.00 3.36
2809 4382 6.327279 TGTGAAAGAAGATCTCGTAACTCA 57.673 37.500 0.00 0.00 0.00 3.41
2836 4409 6.011717 TCCGTCCCAATATACCTACCATACTA 60.012 42.308 0.00 0.00 0.00 1.82
2837 4410 5.021458 CCGTCCCAATATACCTACCATACT 58.979 45.833 0.00 0.00 0.00 2.12
2838 4411 5.018809 TCCGTCCCAATATACCTACCATAC 58.981 45.833 0.00 0.00 0.00 2.39
2879 4452 2.673833 ACGTCCTCTTTAAACAGAGCG 58.326 47.619 0.00 1.96 39.33 5.03
2884 4457 4.824289 GTGGGATACGTCCTCTTTAAACA 58.176 43.478 0.00 0.00 44.44 2.83
2927 4500 4.821589 CCGCAAGAGCCTCCCGAC 62.822 72.222 0.00 0.00 43.02 4.79
2964 4537 2.379972 CTAATCCGTGAGACCTGGTCT 58.620 52.381 28.70 28.70 46.42 3.85
2965 4538 1.202428 GCTAATCCGTGAGACCTGGTC 60.202 57.143 19.20 19.20 0.00 4.02
2966 4539 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
2967 4540 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
2968 4541 1.202463 CCTGCTAATCCGTGAGACCTG 60.202 57.143 0.00 0.00 0.00 4.00
2969 4542 1.115467 CCTGCTAATCCGTGAGACCT 58.885 55.000 0.00 0.00 0.00 3.85
2970 4543 0.824759 ACCTGCTAATCCGTGAGACC 59.175 55.000 0.00 0.00 0.00 3.85
2971 4544 1.476891 TCACCTGCTAATCCGTGAGAC 59.523 52.381 0.00 0.00 31.80 3.36
2972 4545 1.847328 TCACCTGCTAATCCGTGAGA 58.153 50.000 0.00 0.00 31.80 3.27
2973 4546 2.215907 CTCACCTGCTAATCCGTGAG 57.784 55.000 2.01 2.01 44.38 3.51
2974 4547 1.476891 GTCTCACCTGCTAATCCGTGA 59.523 52.381 0.00 0.00 34.26 4.35
2975 4548 1.471676 GGTCTCACCTGCTAATCCGTG 60.472 57.143 0.00 0.00 34.73 4.94
2976 4549 0.824759 GGTCTCACCTGCTAATCCGT 59.175 55.000 0.00 0.00 34.73 4.69
2977 4550 0.105039 GGGTCTCACCTGCTAATCCG 59.895 60.000 0.00 0.00 38.64 4.18
2978 4551 1.204146 TGGGTCTCACCTGCTAATCC 58.796 55.000 0.00 0.00 38.64 3.01
2979 4552 2.224402 GGATGGGTCTCACCTGCTAATC 60.224 54.545 0.00 0.00 38.64 1.75
2980 4553 1.771255 GGATGGGTCTCACCTGCTAAT 59.229 52.381 0.00 0.00 38.64 1.73
2981 4554 1.204146 GGATGGGTCTCACCTGCTAA 58.796 55.000 0.00 0.00 38.64 3.09
2982 4555 0.339859 AGGATGGGTCTCACCTGCTA 59.660 55.000 0.00 0.00 38.64 3.49
2983 4556 1.081833 AGGATGGGTCTCACCTGCT 59.918 57.895 0.00 0.00 38.64 4.24
2984 4557 1.222936 CAGGATGGGTCTCACCTGC 59.777 63.158 7.99 0.00 42.30 4.85
2986 4559 3.421394 TTATCAGGATGGGTCTCACCT 57.579 47.619 0.00 0.00 38.64 4.00
2987 4560 4.103153 TCATTTATCAGGATGGGTCTCACC 59.897 45.833 0.00 0.00 37.60 4.02
2988 4561 5.059833 GTCATTTATCAGGATGGGTCTCAC 58.940 45.833 0.00 0.00 36.16 3.51
2989 4562 4.721274 TGTCATTTATCAGGATGGGTCTCA 59.279 41.667 0.00 0.00 36.16 3.27
2990 4563 5.059833 GTGTCATTTATCAGGATGGGTCTC 58.940 45.833 0.00 0.00 36.16 3.36
2991 4564 4.443457 CGTGTCATTTATCAGGATGGGTCT 60.443 45.833 0.00 0.00 36.16 3.85
2992 4565 3.809832 CGTGTCATTTATCAGGATGGGTC 59.190 47.826 0.00 0.00 36.16 4.46
2993 4566 3.199946 ACGTGTCATTTATCAGGATGGGT 59.800 43.478 0.00 0.00 36.16 4.51
2994 4567 3.561310 CACGTGTCATTTATCAGGATGGG 59.439 47.826 7.58 0.00 36.16 4.00
2995 4568 4.271049 GTCACGTGTCATTTATCAGGATGG 59.729 45.833 16.51 0.00 36.16 3.51
2996 4569 4.869861 TGTCACGTGTCATTTATCAGGATG 59.130 41.667 16.51 0.00 37.54 3.51
2997 4570 5.084818 TGTCACGTGTCATTTATCAGGAT 57.915 39.130 16.51 0.00 0.00 3.24
2998 4571 4.529109 TGTCACGTGTCATTTATCAGGA 57.471 40.909 16.51 0.00 0.00 3.86
2999 4572 5.351189 TGAATGTCACGTGTCATTTATCAGG 59.649 40.000 31.66 0.00 34.78 3.86
3000 4573 6.407475 TGAATGTCACGTGTCATTTATCAG 57.593 37.500 31.66 0.00 34.78 2.90
3001 4574 6.983474 ATGAATGTCACGTGTCATTTATCA 57.017 33.333 31.66 26.62 34.78 2.15
3002 4575 9.935682 ATTTATGAATGTCACGTGTCATTTATC 57.064 29.630 32.57 24.12 34.78 1.75
3003 4576 9.935682 GATTTATGAATGTCACGTGTCATTTAT 57.064 29.630 31.82 31.82 34.78 1.40
3004 4577 8.940952 TGATTTATGAATGTCACGTGTCATTTA 58.059 29.630 31.66 28.85 34.78 1.40
3005 4578 7.750458 GTGATTTATGAATGTCACGTGTCATTT 59.250 33.333 31.66 22.79 34.78 2.32
3006 4579 7.094848 TGTGATTTATGAATGTCACGTGTCATT 60.095 33.333 31.66 31.66 42.86 2.57
3007 4580 6.371271 TGTGATTTATGAATGTCACGTGTCAT 59.629 34.615 20.34 20.34 42.86 3.06
3008 4581 5.698545 TGTGATTTATGAATGTCACGTGTCA 59.301 36.000 17.50 17.50 42.86 3.58
3009 4582 6.164408 TGTGATTTATGAATGTCACGTGTC 57.836 37.500 16.51 10.98 42.86 3.67
3010 4583 6.552859 TTGTGATTTATGAATGTCACGTGT 57.447 33.333 16.51 0.00 42.86 4.49
3011 4584 6.032775 GCTTTGTGATTTATGAATGTCACGTG 59.967 38.462 9.94 9.94 42.86 4.49
3012 4585 6.086222 GCTTTGTGATTTATGAATGTCACGT 58.914 36.000 0.00 0.00 42.86 4.49
3013 4586 6.085573 TGCTTTGTGATTTATGAATGTCACG 58.914 36.000 0.00 0.00 42.86 4.35
3014 4587 8.470040 AATGCTTTGTGATTTATGAATGTCAC 57.530 30.769 0.00 0.00 40.93 3.67
3017 4590 9.369904 GGTAAATGCTTTGTGATTTATGAATGT 57.630 29.630 0.00 0.00 0.00 2.71
3018 4591 8.819974 GGGTAAATGCTTTGTGATTTATGAATG 58.180 33.333 0.00 0.00 0.00 2.67
3019 4592 7.986889 GGGGTAAATGCTTTGTGATTTATGAAT 59.013 33.333 0.00 0.00 0.00 2.57
3020 4593 7.038729 TGGGGTAAATGCTTTGTGATTTATGAA 60.039 33.333 0.00 0.00 0.00 2.57
3021 4594 6.438741 TGGGGTAAATGCTTTGTGATTTATGA 59.561 34.615 0.00 0.00 0.00 2.15
3022 4595 6.534793 GTGGGGTAAATGCTTTGTGATTTATG 59.465 38.462 0.00 0.00 0.00 1.90
3023 4596 6.351796 GGTGGGGTAAATGCTTTGTGATTTAT 60.352 38.462 0.00 0.00 0.00 1.40
3024 4597 5.046950 GGTGGGGTAAATGCTTTGTGATTTA 60.047 40.000 0.00 0.00 0.00 1.40
3025 4598 4.262851 GGTGGGGTAAATGCTTTGTGATTT 60.263 41.667 0.00 0.00 0.00 2.17
3026 4599 3.260632 GGTGGGGTAAATGCTTTGTGATT 59.739 43.478 0.00 0.00 0.00 2.57
3027 4600 2.831526 GGTGGGGTAAATGCTTTGTGAT 59.168 45.455 0.00 0.00 0.00 3.06
3028 4601 2.243810 GGTGGGGTAAATGCTTTGTGA 58.756 47.619 0.00 0.00 0.00 3.58
3029 4602 1.275010 GGGTGGGGTAAATGCTTTGTG 59.725 52.381 0.00 0.00 0.00 3.33
3030 4603 1.639722 GGGTGGGGTAAATGCTTTGT 58.360 50.000 0.00 0.00 0.00 2.83
3031 4604 0.901827 GGGGTGGGGTAAATGCTTTG 59.098 55.000 0.00 0.00 0.00 2.77
3032 4605 0.489567 TGGGGTGGGGTAAATGCTTT 59.510 50.000 0.00 0.00 0.00 3.51
3033 4606 0.715987 ATGGGGTGGGGTAAATGCTT 59.284 50.000 0.00 0.00 0.00 3.91
3034 4607 0.261696 GATGGGGTGGGGTAAATGCT 59.738 55.000 0.00 0.00 0.00 3.79
3035 4608 0.261696 AGATGGGGTGGGGTAAATGC 59.738 55.000 0.00 0.00 0.00 3.56
3036 4609 1.568597 TCAGATGGGGTGGGGTAAATG 59.431 52.381 0.00 0.00 0.00 2.32
3037 4610 1.994399 TCAGATGGGGTGGGGTAAAT 58.006 50.000 0.00 0.00 0.00 1.40
3038 4611 1.761711 TTCAGATGGGGTGGGGTAAA 58.238 50.000 0.00 0.00 0.00 2.01
3039 4612 1.761711 TTTCAGATGGGGTGGGGTAA 58.238 50.000 0.00 0.00 0.00 2.85
3040 4613 1.850345 GATTTCAGATGGGGTGGGGTA 59.150 52.381 0.00 0.00 0.00 3.69
3041 4614 0.631212 GATTTCAGATGGGGTGGGGT 59.369 55.000 0.00 0.00 0.00 4.95
3042 4615 0.630673 TGATTTCAGATGGGGTGGGG 59.369 55.000 0.00 0.00 0.00 4.96
3043 4616 1.410648 CCTGATTTCAGATGGGGTGGG 60.411 57.143 9.15 0.00 46.59 4.61
3044 4617 1.410648 CCCTGATTTCAGATGGGGTGG 60.411 57.143 9.15 0.00 46.59 4.61
3045 4618 1.410648 CCCCTGATTTCAGATGGGGTG 60.411 57.143 9.15 0.00 46.59 4.61
3046 4619 0.929244 CCCCTGATTTCAGATGGGGT 59.071 55.000 9.15 0.00 46.59 4.95
3047 4620 3.835810 CCCCTGATTTCAGATGGGG 57.164 57.895 9.15 8.38 46.59 4.96
3048 4621 3.835810 CCCCCTGATTTCAGATGGG 57.164 57.895 16.07 16.07 46.59 4.00
3063 4636 3.584733 AAGCATCTAATCTGTTCCCCC 57.415 47.619 0.00 0.00 0.00 5.40
3064 4637 4.096984 CACAAAGCATCTAATCTGTTCCCC 59.903 45.833 0.00 0.00 0.00 4.81
3065 4638 4.943705 TCACAAAGCATCTAATCTGTTCCC 59.056 41.667 0.00 0.00 0.00 3.97
3066 4639 6.690194 ATCACAAAGCATCTAATCTGTTCC 57.310 37.500 0.00 0.00 0.00 3.62
3067 4640 8.025445 ACAAATCACAAAGCATCTAATCTGTTC 58.975 33.333 0.00 0.00 0.00 3.18
3068 4641 7.811236 CACAAATCACAAAGCATCTAATCTGTT 59.189 33.333 0.00 0.00 0.00 3.16
3069 4642 7.175467 TCACAAATCACAAAGCATCTAATCTGT 59.825 33.333 0.00 0.00 0.00 3.41
3070 4643 7.532571 TCACAAATCACAAAGCATCTAATCTG 58.467 34.615 0.00 0.00 0.00 2.90
3071 4644 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
3072 4645 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
3073 4646 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
3074 4647 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
3075 4648 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
3076 4649 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
3077 4650 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
3078 4651 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
3079 4652 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
3080 4653 3.391965 TGGCATTCACAAATCACAAAGC 58.608 40.909 0.00 0.00 0.00 3.51
3081 4654 6.814644 ACATATGGCATTCACAAATCACAAAG 59.185 34.615 4.78 0.00 0.00 2.77
3082 4655 6.699366 ACATATGGCATTCACAAATCACAAA 58.301 32.000 4.78 0.00 0.00 2.83
3083 4656 6.071503 TGACATATGGCATTCACAAATCACAA 60.072 34.615 7.32 0.00 0.00 3.33
3084 4657 5.418209 TGACATATGGCATTCACAAATCACA 59.582 36.000 7.32 0.00 0.00 3.58
3085 4658 5.893687 TGACATATGGCATTCACAAATCAC 58.106 37.500 7.32 0.00 0.00 3.06
3086 4659 6.239092 GGATGACATATGGCATTCACAAATCA 60.239 38.462 24.86 6.14 45.42 2.57
3087 4660 6.154445 GGATGACATATGGCATTCACAAATC 58.846 40.000 24.86 10.46 45.42 2.17
3088 4661 5.599242 TGGATGACATATGGCATTCACAAAT 59.401 36.000 26.22 2.36 43.95 2.32
3089 4662 4.954826 TGGATGACATATGGCATTCACAAA 59.045 37.500 26.22 5.98 43.95 2.83
3090 4663 4.534797 TGGATGACATATGGCATTCACAA 58.465 39.130 26.22 6.35 43.95 3.33
3091 4664 4.167652 TGGATGACATATGGCATTCACA 57.832 40.909 26.22 20.52 43.95 3.58
3094 4667 5.708697 TCTTGATGGATGACATATGGCATTC 59.291 40.000 24.86 23.16 45.42 2.67
3095 4668 5.475909 GTCTTGATGGATGACATATGGCATT 59.524 40.000 24.86 9.76 45.42 3.56
3097 4670 4.392047 GTCTTGATGGATGACATATGGCA 58.608 43.478 15.09 15.09 40.72 4.92
3098 4671 3.434641 CGTCTTGATGGATGACATATGGC 59.565 47.826 7.80 4.20 40.72 4.40
3099 4672 3.999001 CCGTCTTGATGGATGACATATGG 59.001 47.826 7.80 0.00 40.72 2.74
3100 4673 3.999001 CCCGTCTTGATGGATGACATATG 59.001 47.826 10.25 0.00 40.72 1.78
3101 4674 3.648067 ACCCGTCTTGATGGATGACATAT 59.352 43.478 10.25 0.00 40.72 1.78
3102 4675 3.038280 ACCCGTCTTGATGGATGACATA 58.962 45.455 10.25 0.00 40.72 2.29
3103 4676 1.839994 ACCCGTCTTGATGGATGACAT 59.160 47.619 10.25 0.00 44.18 3.06
3104 4677 1.207089 GACCCGTCTTGATGGATGACA 59.793 52.381 10.25 0.00 0.00 3.58
3105 4678 1.482593 AGACCCGTCTTGATGGATGAC 59.517 52.381 10.25 0.00 36.31 3.06
3106 4679 1.757118 GAGACCCGTCTTGATGGATGA 59.243 52.381 10.25 0.00 40.61 2.92
3107 4680 1.482182 TGAGACCCGTCTTGATGGATG 59.518 52.381 10.25 0.00 40.61 3.51
3108 4681 1.482593 GTGAGACCCGTCTTGATGGAT 59.517 52.381 10.25 0.00 40.61 3.41
3109 4682 0.895530 GTGAGACCCGTCTTGATGGA 59.104 55.000 10.25 0.00 40.61 3.41
3110 4683 0.108138 GGTGAGACCCGTCTTGATGG 60.108 60.000 0.00 2.00 40.61 3.51
3111 4684 0.898320 AGGTGAGACCCGTCTTGATG 59.102 55.000 0.00 0.00 39.75 3.07
3112 4685 0.898320 CAGGTGAGACCCGTCTTGAT 59.102 55.000 0.00 0.00 39.75 2.57
3113 4686 1.816863 GCAGGTGAGACCCGTCTTGA 61.817 60.000 0.00 0.00 39.75 3.02
3114 4687 1.374758 GCAGGTGAGACCCGTCTTG 60.375 63.158 0.00 0.00 39.75 3.02
3115 4688 1.122019 AAGCAGGTGAGACCCGTCTT 61.122 55.000 0.00 0.00 39.75 3.01
3116 4689 1.122019 AAAGCAGGTGAGACCCGTCT 61.122 55.000 0.00 0.00 39.75 4.18
3117 4690 0.606604 TAAAGCAGGTGAGACCCGTC 59.393 55.000 0.00 0.00 39.75 4.79
3118 4691 1.276622 ATAAAGCAGGTGAGACCCGT 58.723 50.000 0.00 0.00 39.75 5.28
3119 4692 3.069586 TCATATAAAGCAGGTGAGACCCG 59.930 47.826 0.00 0.00 39.75 5.28
3120 4693 4.345257 TCTCATATAAAGCAGGTGAGACCC 59.655 45.833 0.00 0.00 40.06 4.46
3121 4694 5.537300 TCTCATATAAAGCAGGTGAGACC 57.463 43.478 0.00 0.00 40.06 3.85
3123 4696 5.069648 CAGGTCTCATATAAAGCAGGTGAGA 59.930 44.000 0.00 0.00 41.99 3.27
3124 4697 5.295950 CAGGTCTCATATAAAGCAGGTGAG 58.704 45.833 0.00 0.00 38.07 3.51
3125 4698 4.101585 CCAGGTCTCATATAAAGCAGGTGA 59.898 45.833 0.00 0.00 0.00 4.02
3126 4699 4.141620 ACCAGGTCTCATATAAAGCAGGTG 60.142 45.833 0.00 0.00 30.37 4.00
3127 4700 4.040755 ACCAGGTCTCATATAAAGCAGGT 58.959 43.478 0.00 0.00 0.00 4.00
3128 4701 4.503991 GGACCAGGTCTCATATAAAGCAGG 60.504 50.000 19.57 0.00 32.47 4.85
3129 4702 4.503991 GGGACCAGGTCTCATATAAAGCAG 60.504 50.000 19.57 0.00 32.50 4.24
3130 4703 3.391296 GGGACCAGGTCTCATATAAAGCA 59.609 47.826 19.57 0.00 32.50 3.91
3131 4704 3.391296 TGGGACCAGGTCTCATATAAAGC 59.609 47.826 19.28 0.00 38.21 3.51
3140 4713 2.592308 GCCATGGGACCAGGTCTC 59.408 66.667 19.57 16.64 32.92 3.36
3141 4714 3.017581 GGCCATGGGACCAGGTCT 61.018 66.667 19.57 0.00 32.47 3.85
3142 4715 4.489771 CGGCCATGGGACCAGGTC 62.490 72.222 15.13 11.70 0.00 3.85
3145 4718 3.482232 GATCCGGCCATGGGACCAG 62.482 68.421 15.13 0.00 36.14 4.00
3146 4719 3.488569 GATCCGGCCATGGGACCA 61.489 66.667 15.13 0.00 36.14 4.02
3147 4720 3.171388 AGATCCGGCCATGGGACC 61.171 66.667 15.13 6.06 36.14 4.46
3148 4721 2.427753 GAGATCCGGCCATGGGAC 59.572 66.667 15.13 0.00 36.14 4.46
3149 4722 2.849162 GGAGATCCGGCCATGGGA 60.849 66.667 15.13 0.84 38.10 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.