Multiple sequence alignment - TraesCS7B01G091900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G091900 chr7B 100.000 3119 0 0 1 3119 105322184 105325302 0.000000e+00 5760.0
1 TraesCS7B01G091900 chr7B 92.490 253 17 2 2780 3030 52964960 52964708 8.220000e-96 361.0
2 TraesCS7B01G091900 chr7A 94.964 2085 68 18 359 2409 140535908 140537989 0.000000e+00 3234.0
3 TraesCS7B01G091900 chr7A 90.020 491 44 4 2633 3119 140538193 140538682 5.680000e-177 630.0
4 TraesCS7B01G091900 chr7D 94.493 1816 58 17 631 2409 140232146 140233956 0.000000e+00 2761.0
5 TraesCS7B01G091900 chr7D 86.944 720 69 9 2409 3119 140233986 140234689 0.000000e+00 785.0
6 TraesCS7B01G091900 chr7D 94.231 208 6 4 341 543 140231613 140231819 2.340000e-81 313.0
7 TraesCS7B01G091900 chr7D 83.962 106 13 3 2505 2610 604292694 604292593 7.120000e-17 99.0
8 TraesCS7B01G091900 chr6B 77.153 1138 149 69 972 2031 589129455 589128351 2.720000e-155 558.0
9 TraesCS7B01G091900 chr6B 92.607 257 16 3 2777 3030 388250413 388250669 1.770000e-97 366.0
10 TraesCS7B01G091900 chr6B 92.460 252 16 3 2777 3025 388191585 388191836 1.060000e-94 357.0
11 TraesCS7B01G091900 chr6B 100.000 28 0 0 260 287 576267038 576267065 6.000000e-03 52.8
12 TraesCS7B01G091900 chr6A 77.205 1145 142 71 972 2031 540145871 540144761 2.720000e-155 558.0
13 TraesCS7B01G091900 chr6D 77.145 1142 139 70 972 2031 393936419 393935318 4.550000e-153 551.0
14 TraesCS7B01G091900 chr5B 92.460 252 16 3 2780 3028 713070747 713070496 1.060000e-94 357.0
15 TraesCS7B01G091900 chr5B 95.455 44 2 0 294 337 694157928 694157885 1.550000e-08 71.3
16 TraesCS7B01G091900 chr5B 97.500 40 1 0 2506 2545 42262950 42262911 5.580000e-08 69.4
17 TraesCS7B01G091900 chr4D 92.126 254 17 3 2780 3030 123627972 123627719 3.830000e-94 355.0
18 TraesCS7B01G091900 chr4D 83.654 104 12 3 2510 2610 14609698 14609597 3.310000e-15 93.5
19 TraesCS7B01G091900 chr4D 87.931 58 6 1 294 350 211388603 211388660 2.010000e-07 67.6
20 TraesCS7B01G091900 chr1B 91.829 257 18 3 2777 3030 338903893 338904149 3.830000e-94 355.0
21 TraesCS7B01G091900 chr1B 92.126 254 17 3 2780 3030 683722670 683722417 3.830000e-94 355.0
22 TraesCS7B01G091900 chr1B 97.222 36 1 0 2510 2545 661486102 661486137 9.340000e-06 62.1
23 TraesCS7B01G091900 chr3B 88.350 103 10 1 2510 2610 731134709 731134811 4.220000e-24 122.0
24 TraesCS7B01G091900 chr2D 95.588 68 3 0 2712 2779 77375507 77375440 3.290000e-20 110.0
25 TraesCS7B01G091900 chr2D 90.909 77 7 0 2541 2617 128890708 128890632 1.530000e-18 104.0
26 TraesCS7B01G091900 chr5D 92.000 75 6 0 2542 2616 40912938 40912864 4.250000e-19 106.0
27 TraesCS7B01G091900 chr2A 85.437 103 13 2 2510 2612 746253495 746253395 4.250000e-19 106.0
28 TraesCS7B01G091900 chr4B 90.789 76 7 0 2542 2617 576391656 576391581 5.500000e-18 102.0
29 TraesCS7B01G091900 chr4B 87.931 58 6 1 294 350 282886936 282886993 2.010000e-07 67.6
30 TraesCS7B01G091900 chr4B 82.667 75 10 3 261 335 193527094 193527023 2.600000e-06 63.9
31 TraesCS7B01G091900 chr2B 83.486 109 14 2 2506 2610 676589011 676589119 7.120000e-17 99.0
32 TraesCS7B01G091900 chr2B 95.745 47 2 0 288 334 98285819 98285773 3.340000e-10 76.8
33 TraesCS7B01G091900 chr2B 95.455 44 2 0 294 337 225436040 225436083 1.550000e-08 71.3
34 TraesCS7B01G091900 chr1D 95.349 43 2 0 294 336 338394522 338394564 5.580000e-08 69.4
35 TraesCS7B01G091900 chr3D 93.333 45 3 0 294 338 6948809 6948853 2.010000e-07 67.6
36 TraesCS7B01G091900 chr3D 89.362 47 3 2 260 306 8001777 8001821 1.210000e-04 58.4
37 TraesCS7B01G091900 chr3A 93.478 46 2 1 291 336 144441936 144441892 2.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G091900 chr7B 105322184 105325302 3118 False 5760.000000 5760 100.000000 1 3119 1 chr7B.!!$F1 3118
1 TraesCS7B01G091900 chr7A 140535908 140538682 2774 False 1932.000000 3234 92.492000 359 3119 2 chr7A.!!$F1 2760
2 TraesCS7B01G091900 chr7D 140231613 140234689 3076 False 1286.333333 2761 91.889333 341 3119 3 chr7D.!!$F1 2778
3 TraesCS7B01G091900 chr6B 589128351 589129455 1104 True 558.000000 558 77.153000 972 2031 1 chr6B.!!$R1 1059
4 TraesCS7B01G091900 chr6A 540144761 540145871 1110 True 558.000000 558 77.205000 972 2031 1 chr6A.!!$R1 1059
5 TraesCS7B01G091900 chr6D 393935318 393936419 1101 True 551.000000 551 77.145000 972 2031 1 chr6D.!!$R1 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.096454 GCAATGTTCCCGTCGTTAGC 59.904 55.0 0.0 0.0 0.00 3.09 F
190 191 0.244450 AATGTTCCCGTCGTTAGCGA 59.756 50.0 0.0 0.0 45.79 4.93 F
601 607 0.336737 TCTCCACCTTCTCTCCCCTC 59.663 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1981 0.455410 TTGCTGTTGCTGTTGGTGTC 59.545 50.000 0.00 0.0 40.48 3.67 R
2116 2481 2.011947 GTGCTGCAGATGTTGATGCTA 58.988 47.619 20.43 0.0 42.98 3.49 R
2298 2663 1.202879 ACCGTGCAAGAATTTGGAGGA 60.203 47.619 0.00 0.0 41.30 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.758613 GGTTACAAAAGATTCGGTTTTGAAA 57.241 32.000 13.68 1.19 44.33 2.69
25 26 8.360325 GGTTACAAAAGATTCGGTTTTGAAAT 57.640 30.769 13.68 0.00 44.33 2.17
26 27 8.822855 GGTTACAAAAGATTCGGTTTTGAAATT 58.177 29.630 13.68 0.00 44.33 1.82
51 52 9.761504 TTTATTATGTTTATAATCCGTCCACGA 57.238 29.630 0.00 0.00 39.53 4.35
52 53 9.932207 TTATTATGTTTATAATCCGTCCACGAT 57.068 29.630 0.00 0.00 39.53 3.73
53 54 7.646446 TTATGTTTATAATCCGTCCACGATG 57.354 36.000 0.00 0.00 43.02 3.84
54 55 3.805422 TGTTTATAATCCGTCCACGATGC 59.195 43.478 0.00 0.00 43.02 3.91
55 56 3.737032 TTATAATCCGTCCACGATGCA 57.263 42.857 0.00 0.00 43.02 3.96
56 57 2.154854 ATAATCCGTCCACGATGCAG 57.845 50.000 0.00 0.00 43.02 4.41
57 58 0.104120 TAATCCGTCCACGATGCAGG 59.896 55.000 0.00 0.00 43.02 4.85
58 59 1.613317 AATCCGTCCACGATGCAGGA 61.613 55.000 0.00 0.00 43.02 3.86
59 60 2.021068 ATCCGTCCACGATGCAGGAG 62.021 60.000 0.00 0.00 43.02 3.69
60 61 2.573869 CGTCCACGATGCAGGAGT 59.426 61.111 0.00 0.00 43.02 3.85
61 62 1.663379 CCGTCCACGATGCAGGAGTA 61.663 60.000 0.00 0.00 43.02 2.59
62 63 0.385751 CGTCCACGATGCAGGAGTAT 59.614 55.000 0.00 0.00 43.02 2.12
63 64 1.858091 GTCCACGATGCAGGAGTATG 58.142 55.000 0.00 0.00 33.85 2.39
64 65 1.137086 GTCCACGATGCAGGAGTATGT 59.863 52.381 0.00 0.00 33.85 2.29
65 66 1.136891 TCCACGATGCAGGAGTATGTG 59.863 52.381 0.00 0.00 0.00 3.21
66 67 1.575244 CACGATGCAGGAGTATGTGG 58.425 55.000 0.00 0.00 0.00 4.17
67 68 1.134699 CACGATGCAGGAGTATGTGGT 60.135 52.381 0.00 0.00 0.00 4.16
68 69 1.555075 ACGATGCAGGAGTATGTGGTT 59.445 47.619 0.00 0.00 0.00 3.67
69 70 2.764010 ACGATGCAGGAGTATGTGGTTA 59.236 45.455 0.00 0.00 0.00 2.85
70 71 3.196901 ACGATGCAGGAGTATGTGGTTAA 59.803 43.478 0.00 0.00 0.00 2.01
71 72 4.188462 CGATGCAGGAGTATGTGGTTAAA 58.812 43.478 0.00 0.00 0.00 1.52
72 73 4.816385 CGATGCAGGAGTATGTGGTTAAAT 59.184 41.667 0.00 0.00 0.00 1.40
73 74 5.277490 CGATGCAGGAGTATGTGGTTAAATG 60.277 44.000 0.00 0.00 0.00 2.32
74 75 4.917385 TGCAGGAGTATGTGGTTAAATGT 58.083 39.130 0.00 0.00 0.00 2.71
75 76 4.941263 TGCAGGAGTATGTGGTTAAATGTC 59.059 41.667 0.00 0.00 0.00 3.06
76 77 5.186198 GCAGGAGTATGTGGTTAAATGTCT 58.814 41.667 0.00 0.00 0.00 3.41
77 78 5.648092 GCAGGAGTATGTGGTTAAATGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
78 79 6.403636 GCAGGAGTATGTGGTTAAATGTCTTG 60.404 42.308 0.00 0.00 0.00 3.02
79 80 6.094048 CAGGAGTATGTGGTTAAATGTCTTGG 59.906 42.308 0.00 0.00 0.00 3.61
80 81 6.012858 AGGAGTATGTGGTTAAATGTCTTGGA 60.013 38.462 0.00 0.00 0.00 3.53
81 82 6.316390 GGAGTATGTGGTTAAATGTCTTGGAG 59.684 42.308 0.00 0.00 0.00 3.86
82 83 6.180472 AGTATGTGGTTAAATGTCTTGGAGG 58.820 40.000 0.00 0.00 0.00 4.30
83 84 4.715534 TGTGGTTAAATGTCTTGGAGGA 57.284 40.909 0.00 0.00 0.00 3.71
84 85 4.394729 TGTGGTTAAATGTCTTGGAGGAC 58.605 43.478 0.00 0.00 36.81 3.85
90 91 3.240670 TGTCTTGGAGGACAGTGGT 57.759 52.632 0.00 0.00 40.72 4.16
91 92 2.391926 TGTCTTGGAGGACAGTGGTA 57.608 50.000 0.00 0.00 40.72 3.25
92 93 1.968493 TGTCTTGGAGGACAGTGGTAC 59.032 52.381 0.00 0.00 40.72 3.34
93 94 1.275573 GTCTTGGAGGACAGTGGTACC 59.724 57.143 4.43 4.43 36.35 3.34
94 95 0.613777 CTTGGAGGACAGTGGTACCC 59.386 60.000 10.07 0.32 0.00 3.69
95 96 0.838987 TTGGAGGACAGTGGTACCCC 60.839 60.000 10.07 2.34 0.00 4.95
96 97 1.229400 GGAGGACAGTGGTACCCCA 60.229 63.158 10.07 0.00 38.87 4.96
97 98 0.838987 GGAGGACAGTGGTACCCCAA 60.839 60.000 10.07 0.00 44.15 4.12
98 99 1.286248 GAGGACAGTGGTACCCCAAT 58.714 55.000 10.07 0.00 44.15 3.16
99 100 1.209747 GAGGACAGTGGTACCCCAATC 59.790 57.143 10.07 2.07 44.15 2.67
100 101 1.203440 AGGACAGTGGTACCCCAATCT 60.203 52.381 10.07 0.00 44.15 2.40
101 102 2.045326 AGGACAGTGGTACCCCAATCTA 59.955 50.000 10.07 0.00 44.15 1.98
102 103 3.046374 GGACAGTGGTACCCCAATCTAT 58.954 50.000 10.07 0.00 44.15 1.98
103 104 3.181454 GGACAGTGGTACCCCAATCTATG 60.181 52.174 10.07 0.00 44.15 2.23
104 105 3.709653 GACAGTGGTACCCCAATCTATGA 59.290 47.826 10.07 0.00 44.15 2.15
105 106 3.711704 ACAGTGGTACCCCAATCTATGAG 59.288 47.826 10.07 0.00 44.15 2.90
106 107 3.071602 CAGTGGTACCCCAATCTATGAGG 59.928 52.174 10.07 0.00 44.15 3.86
107 108 2.372172 GTGGTACCCCAATCTATGAGGG 59.628 54.545 10.07 0.00 44.15 4.30
108 109 2.251605 TGGTACCCCAATCTATGAGGGA 59.748 50.000 10.07 0.00 45.80 4.20
109 110 3.115962 TGGTACCCCAATCTATGAGGGAT 60.116 47.826 10.07 0.00 45.80 3.85
110 111 3.519913 GGTACCCCAATCTATGAGGGATC 59.480 52.174 0.00 0.00 45.80 3.36
111 112 3.367280 ACCCCAATCTATGAGGGATCA 57.633 47.619 0.00 0.00 45.80 2.92
112 113 3.680169 ACCCCAATCTATGAGGGATCAA 58.320 45.455 0.00 0.00 45.80 2.57
113 114 4.054369 ACCCCAATCTATGAGGGATCAAA 58.946 43.478 0.00 0.00 45.80 2.69
114 115 4.141158 ACCCCAATCTATGAGGGATCAAAC 60.141 45.833 0.00 0.00 45.80 2.93
115 116 4.401925 CCCAATCTATGAGGGATCAAACC 58.598 47.826 0.00 0.00 45.80 3.27
127 128 3.877508 GGGATCAAACCCTAGATTTGACG 59.122 47.826 18.74 0.00 46.05 4.35
128 129 4.514401 GGATCAAACCCTAGATTTGACGT 58.486 43.478 18.74 8.81 46.05 4.34
129 130 4.332819 GGATCAAACCCTAGATTTGACGTG 59.667 45.833 18.74 0.00 46.05 4.49
130 131 4.345859 TCAAACCCTAGATTTGACGTGT 57.654 40.909 14.63 0.00 40.32 4.49
131 132 4.710324 TCAAACCCTAGATTTGACGTGTT 58.290 39.130 14.63 0.00 40.32 3.32
132 133 4.513692 TCAAACCCTAGATTTGACGTGTTG 59.486 41.667 14.63 0.00 40.32 3.33
133 134 4.345859 AACCCTAGATTTGACGTGTTGA 57.654 40.909 0.00 0.00 0.00 3.18
134 135 4.553330 ACCCTAGATTTGACGTGTTGAT 57.447 40.909 0.00 0.00 0.00 2.57
135 136 4.253685 ACCCTAGATTTGACGTGTTGATG 58.746 43.478 0.00 0.00 0.00 3.07
136 137 4.253685 CCCTAGATTTGACGTGTTGATGT 58.746 43.478 0.00 0.00 0.00 3.06
137 138 4.330074 CCCTAGATTTGACGTGTTGATGTC 59.670 45.833 0.00 0.00 38.45 3.06
138 139 5.171476 CCTAGATTTGACGTGTTGATGTCT 58.829 41.667 0.00 0.00 38.72 3.41
139 140 5.639506 CCTAGATTTGACGTGTTGATGTCTT 59.360 40.000 0.00 0.00 38.72 3.01
140 141 6.811665 CCTAGATTTGACGTGTTGATGTCTTA 59.188 38.462 0.00 0.00 38.72 2.10
141 142 7.492669 CCTAGATTTGACGTGTTGATGTCTTAT 59.507 37.037 0.00 0.00 38.72 1.73
142 143 9.516314 CTAGATTTGACGTGTTGATGTCTTATA 57.484 33.333 0.00 0.00 38.72 0.98
143 144 8.771920 AGATTTGACGTGTTGATGTCTTATAA 57.228 30.769 0.00 0.00 38.72 0.98
144 145 9.214957 AGATTTGACGTGTTGATGTCTTATAAA 57.785 29.630 0.00 0.00 38.72 1.40
145 146 9.478019 GATTTGACGTGTTGATGTCTTATAAAG 57.522 33.333 0.00 0.00 38.72 1.85
146 147 6.961359 TGACGTGTTGATGTCTTATAAAGG 57.039 37.500 0.00 0.00 38.72 3.11
147 148 5.350365 TGACGTGTTGATGTCTTATAAAGGC 59.650 40.000 0.00 0.00 38.72 4.35
159 160 8.268850 TGTCTTATAAAGGCAGAACATTCTTC 57.731 34.615 0.00 0.00 38.40 2.87
160 161 7.336931 TGTCTTATAAAGGCAGAACATTCTTCC 59.663 37.037 2.39 2.39 38.40 3.46
161 162 7.336931 GTCTTATAAAGGCAGAACATTCTTCCA 59.663 37.037 12.07 0.00 42.17 3.53
162 163 8.055181 TCTTATAAAGGCAGAACATTCTTCCAT 58.945 33.333 12.07 0.00 42.17 3.41
163 164 6.705863 ATAAAGGCAGAACATTCTTCCATC 57.294 37.500 12.07 0.00 42.17 3.51
164 165 2.636830 AGGCAGAACATTCTTCCATCG 58.363 47.619 12.07 0.00 42.17 3.84
165 166 1.672881 GGCAGAACATTCTTCCATCGG 59.327 52.381 5.54 0.00 39.90 4.18
166 167 1.672881 GCAGAACATTCTTCCATCGGG 59.327 52.381 0.00 0.00 34.74 5.14
167 168 2.680805 GCAGAACATTCTTCCATCGGGA 60.681 50.000 0.00 0.00 43.03 5.14
168 169 3.201290 CAGAACATTCTTCCATCGGGAG 58.799 50.000 0.00 0.00 46.01 4.30
169 170 2.171448 AGAACATTCTTCCATCGGGAGG 59.829 50.000 0.00 0.00 46.01 4.30
170 171 0.181350 ACATTCTTCCATCGGGAGGC 59.819 55.000 0.00 0.00 46.01 4.70
171 172 0.181114 CATTCTTCCATCGGGAGGCA 59.819 55.000 0.00 0.00 46.01 4.75
172 173 0.918983 ATTCTTCCATCGGGAGGCAA 59.081 50.000 0.00 0.00 46.01 4.52
173 174 0.918983 TTCTTCCATCGGGAGGCAAT 59.081 50.000 0.00 0.00 46.01 3.56
174 175 0.181114 TCTTCCATCGGGAGGCAATG 59.819 55.000 0.00 0.00 46.01 2.82
175 176 0.107017 CTTCCATCGGGAGGCAATGT 60.107 55.000 0.00 0.00 46.01 2.71
176 177 0.331278 TTCCATCGGGAGGCAATGTT 59.669 50.000 0.00 0.00 46.01 2.71
177 178 0.107214 TCCATCGGGAGGCAATGTTC 60.107 55.000 0.00 0.00 38.64 3.18
178 179 1.103398 CCATCGGGAGGCAATGTTCC 61.103 60.000 0.00 0.00 35.59 3.62
181 182 2.355115 GGGAGGCAATGTTCCCGT 59.645 61.111 8.75 0.00 43.40 5.28
182 183 1.749258 GGGAGGCAATGTTCCCGTC 60.749 63.158 8.75 0.00 43.40 4.79
183 184 2.106683 GGAGGCAATGTTCCCGTCG 61.107 63.158 0.00 0.00 0.00 5.12
184 185 1.375523 GAGGCAATGTTCCCGTCGT 60.376 57.895 0.00 0.00 0.00 4.34
185 186 0.953960 GAGGCAATGTTCCCGTCGTT 60.954 55.000 0.00 0.00 0.00 3.85
186 187 0.322322 AGGCAATGTTCCCGTCGTTA 59.678 50.000 0.00 0.00 0.00 3.18
187 188 0.725117 GGCAATGTTCCCGTCGTTAG 59.275 55.000 0.00 0.00 0.00 2.34
188 189 0.096454 GCAATGTTCCCGTCGTTAGC 59.904 55.000 0.00 0.00 0.00 3.09
189 190 0.368907 CAATGTTCCCGTCGTTAGCG 59.631 55.000 0.00 0.00 39.92 4.26
190 191 0.244450 AATGTTCCCGTCGTTAGCGA 59.756 50.000 0.00 0.00 45.79 4.93
202 203 4.025015 TCGTTAGCGAGACACCTTAATC 57.975 45.455 0.00 0.00 42.81 1.75
203 204 3.693085 TCGTTAGCGAGACACCTTAATCT 59.307 43.478 0.00 0.00 42.81 2.40
204 205 4.157289 TCGTTAGCGAGACACCTTAATCTT 59.843 41.667 0.00 0.00 42.81 2.40
205 206 5.355071 TCGTTAGCGAGACACCTTAATCTTA 59.645 40.000 0.00 0.00 42.81 2.10
206 207 6.032094 CGTTAGCGAGACACCTTAATCTTAA 58.968 40.000 0.00 0.00 41.33 1.85
207 208 6.196724 CGTTAGCGAGACACCTTAATCTTAAG 59.803 42.308 0.00 0.00 41.33 1.85
208 209 5.916661 AGCGAGACACCTTAATCTTAAGA 57.083 39.130 7.82 7.82 42.05 2.10
209 210 6.472686 AGCGAGACACCTTAATCTTAAGAT 57.527 37.500 12.37 12.37 42.05 2.40
210 211 6.508777 AGCGAGACACCTTAATCTTAAGATC 58.491 40.000 18.19 4.53 42.05 2.75
211 212 6.322712 AGCGAGACACCTTAATCTTAAGATCT 59.677 38.462 18.19 9.30 42.05 2.75
212 213 6.419413 GCGAGACACCTTAATCTTAAGATCTG 59.581 42.308 18.19 10.87 42.05 2.90
213 214 6.920758 CGAGACACCTTAATCTTAAGATCTGG 59.079 42.308 18.19 19.65 42.05 3.86
214 215 6.587273 AGACACCTTAATCTTAAGATCTGGC 58.413 40.000 18.19 10.56 42.05 4.85
215 216 6.385467 AGACACCTTAATCTTAAGATCTGGCT 59.615 38.462 18.19 12.36 42.05 4.75
216 217 6.587273 ACACCTTAATCTTAAGATCTGGCTC 58.413 40.000 18.19 0.00 42.05 4.70
217 218 6.156949 ACACCTTAATCTTAAGATCTGGCTCA 59.843 38.462 18.19 0.00 42.05 4.26
218 219 6.705381 CACCTTAATCTTAAGATCTGGCTCAG 59.295 42.308 18.19 3.80 42.05 3.35
219 220 6.385467 ACCTTAATCTTAAGATCTGGCTCAGT 59.615 38.462 18.19 2.41 42.05 3.41
220 221 7.092668 ACCTTAATCTTAAGATCTGGCTCAGTT 60.093 37.037 18.19 2.51 42.05 3.16
221 222 7.772757 CCTTAATCTTAAGATCTGGCTCAGTTT 59.227 37.037 18.19 2.01 42.05 2.66
222 223 9.823647 CTTAATCTTAAGATCTGGCTCAGTTTA 57.176 33.333 18.19 1.08 42.05 2.01
224 225 8.900983 AATCTTAAGATCTGGCTCAGTTTATC 57.099 34.615 18.19 0.09 32.75 1.75
225 226 6.507900 TCTTAAGATCTGGCTCAGTTTATCG 58.492 40.000 0.00 0.00 32.61 2.92
226 227 6.321435 TCTTAAGATCTGGCTCAGTTTATCGA 59.679 38.462 0.00 0.00 32.61 3.59
227 228 5.344743 AAGATCTGGCTCAGTTTATCGAA 57.655 39.130 0.00 0.00 32.61 3.71
228 229 4.942852 AGATCTGGCTCAGTTTATCGAAG 58.057 43.478 0.00 0.00 32.61 3.79
229 230 4.646945 AGATCTGGCTCAGTTTATCGAAGA 59.353 41.667 0.00 0.00 34.80 2.87
230 231 5.304101 AGATCTGGCTCAGTTTATCGAAGAT 59.696 40.000 0.00 0.00 35.19 2.40
231 232 6.491745 AGATCTGGCTCAGTTTATCGAAGATA 59.508 38.462 0.00 0.00 35.19 1.98
232 233 5.833082 TCTGGCTCAGTTTATCGAAGATAC 58.167 41.667 0.00 0.00 35.19 2.24
233 234 5.594725 TCTGGCTCAGTTTATCGAAGATACT 59.405 40.000 0.00 0.00 35.19 2.12
234 235 5.833082 TGGCTCAGTTTATCGAAGATACTC 58.167 41.667 0.00 0.00 45.12 2.59
235 236 5.359860 TGGCTCAGTTTATCGAAGATACTCA 59.640 40.000 0.00 0.00 45.12 3.41
236 237 6.040955 TGGCTCAGTTTATCGAAGATACTCAT 59.959 38.462 0.00 0.00 45.12 2.90
237 238 7.230712 TGGCTCAGTTTATCGAAGATACTCATA 59.769 37.037 0.00 0.00 45.12 2.15
238 239 7.753132 GGCTCAGTTTATCGAAGATACTCATAG 59.247 40.741 0.00 0.00 45.12 2.23
239 240 7.753132 GCTCAGTTTATCGAAGATACTCATAGG 59.247 40.741 0.00 0.00 45.12 2.57
240 241 8.919777 TCAGTTTATCGAAGATACTCATAGGA 57.080 34.615 0.00 0.00 45.12 2.94
241 242 9.004717 TCAGTTTATCGAAGATACTCATAGGAG 57.995 37.037 2.12 2.12 45.12 3.69
242 243 7.753132 CAGTTTATCGAAGATACTCATAGGAGC 59.247 40.741 3.87 0.00 43.45 4.70
243 244 6.761099 TTATCGAAGATACTCATAGGAGCC 57.239 41.667 3.87 0.00 43.45 4.70
244 245 4.374689 TCGAAGATACTCATAGGAGCCT 57.625 45.455 3.87 0.00 45.42 4.58
245 246 4.075682 TCGAAGATACTCATAGGAGCCTG 58.924 47.826 3.87 0.00 45.42 4.85
246 247 3.192422 CGAAGATACTCATAGGAGCCTGG 59.808 52.174 3.87 0.00 45.42 4.45
247 248 3.182887 AGATACTCATAGGAGCCTGGG 57.817 52.381 3.87 0.00 45.42 4.45
248 249 2.452823 AGATACTCATAGGAGCCTGGGT 59.547 50.000 3.87 0.00 45.42 4.51
249 250 3.663136 AGATACTCATAGGAGCCTGGGTA 59.337 47.826 3.87 0.00 45.42 3.69
250 251 4.296313 AGATACTCATAGGAGCCTGGGTAT 59.704 45.833 3.87 0.29 45.42 2.73
251 252 3.352611 ACTCATAGGAGCCTGGGTATT 57.647 47.619 3.87 0.00 45.42 1.89
252 253 2.975489 ACTCATAGGAGCCTGGGTATTG 59.025 50.000 3.87 0.00 45.42 1.90
253 254 3.242867 CTCATAGGAGCCTGGGTATTGA 58.757 50.000 0.00 0.00 33.67 2.57
254 255 3.648067 CTCATAGGAGCCTGGGTATTGAA 59.352 47.826 0.00 0.00 33.67 2.69
255 256 4.242811 TCATAGGAGCCTGGGTATTGAAT 58.757 43.478 0.00 0.00 0.00 2.57
256 257 4.665009 TCATAGGAGCCTGGGTATTGAATT 59.335 41.667 0.00 0.00 0.00 2.17
257 258 5.849475 TCATAGGAGCCTGGGTATTGAATTA 59.151 40.000 0.00 0.00 0.00 1.40
258 259 4.439253 AGGAGCCTGGGTATTGAATTAC 57.561 45.455 0.00 0.00 0.00 1.89
259 260 3.139077 GGAGCCTGGGTATTGAATTACG 58.861 50.000 0.00 0.00 0.00 3.18
260 261 3.433173 GGAGCCTGGGTATTGAATTACGT 60.433 47.826 0.00 0.00 0.00 3.57
261 262 4.202284 GGAGCCTGGGTATTGAATTACGTA 60.202 45.833 0.00 0.00 0.00 3.57
262 263 4.700700 AGCCTGGGTATTGAATTACGTAC 58.299 43.478 0.00 0.00 0.00 3.67
263 264 4.407945 AGCCTGGGTATTGAATTACGTACT 59.592 41.667 0.00 0.00 0.00 2.73
264 265 5.104652 AGCCTGGGTATTGAATTACGTACTT 60.105 40.000 0.00 0.00 0.00 2.24
265 266 5.235831 GCCTGGGTATTGAATTACGTACTTC 59.764 44.000 16.39 16.39 0.00 3.01
266 267 5.756833 CCTGGGTATTGAATTACGTACTTCC 59.243 44.000 19.37 7.31 0.00 3.46
267 268 6.407752 CCTGGGTATTGAATTACGTACTTCCT 60.408 42.308 19.37 11.35 0.00 3.36
268 269 6.576185 TGGGTATTGAATTACGTACTTCCTC 58.424 40.000 19.37 7.59 0.00 3.71
269 270 5.987953 GGGTATTGAATTACGTACTTCCTCC 59.012 44.000 19.37 15.37 0.00 4.30
270 271 5.689068 GGTATTGAATTACGTACTTCCTCCG 59.311 44.000 19.37 0.00 0.00 4.63
271 272 4.789012 TTGAATTACGTACTTCCTCCGT 57.211 40.909 19.37 0.00 38.53 4.69
272 273 5.895636 TTGAATTACGTACTTCCTCCGTA 57.104 39.130 19.37 1.21 36.12 4.02
273 274 5.895636 TGAATTACGTACTTCCTCCGTAA 57.104 39.130 19.37 6.36 46.93 3.18
274 275 6.266168 TGAATTACGTACTTCCTCCGTAAA 57.734 37.500 19.37 0.00 46.28 2.01
275 276 6.324819 TGAATTACGTACTTCCTCCGTAAAG 58.675 40.000 19.37 0.00 46.28 1.85
276 277 6.150976 TGAATTACGTACTTCCTCCGTAAAGA 59.849 38.462 19.37 0.00 46.28 2.52
277 278 5.957842 TTACGTACTTCCTCCGTAAAGAA 57.042 39.130 0.00 0.00 42.18 2.52
278 279 4.853924 ACGTACTTCCTCCGTAAAGAAA 57.146 40.909 0.00 0.00 32.22 2.52
279 280 5.397142 ACGTACTTCCTCCGTAAAGAAAT 57.603 39.130 0.00 0.00 32.22 2.17
280 281 6.515272 ACGTACTTCCTCCGTAAAGAAATA 57.485 37.500 0.00 0.00 32.22 1.40
281 282 6.325596 ACGTACTTCCTCCGTAAAGAAATAC 58.674 40.000 0.00 0.00 32.22 1.89
282 283 6.071952 ACGTACTTCCTCCGTAAAGAAATACA 60.072 38.462 0.00 0.00 32.22 2.29
283 284 6.808212 CGTACTTCCTCCGTAAAGAAATACAA 59.192 38.462 0.00 0.00 0.00 2.41
284 285 7.008992 CGTACTTCCTCCGTAAAGAAATACAAG 59.991 40.741 0.00 0.00 0.00 3.16
285 286 7.001099 ACTTCCTCCGTAAAGAAATACAAGA 57.999 36.000 0.00 0.00 0.00 3.02
286 287 7.097834 ACTTCCTCCGTAAAGAAATACAAGAG 58.902 38.462 0.00 0.00 0.00 2.85
287 288 6.600882 TCCTCCGTAAAGAAATACAAGAGT 57.399 37.500 0.00 0.00 29.89 3.24
288 289 7.707624 TCCTCCGTAAAGAAATACAAGAGTA 57.292 36.000 0.00 0.00 34.10 2.59
289 290 8.302515 TCCTCCGTAAAGAAATACAAGAGTAT 57.697 34.615 0.00 0.00 42.66 2.12
368 369 8.706492 ATAAAATTGCATGTATGTGAAACCTG 57.294 30.769 0.00 0.00 34.36 4.00
379 380 6.485313 TGTATGTGAAACCTGTACAAAGAAGG 59.515 38.462 0.00 0.00 34.36 3.46
383 384 4.080243 TGAAACCTGTACAAAGAAGGGACA 60.080 41.667 0.00 0.00 35.24 4.02
560 566 0.537188 TTGATGTTCTCCCTCGCTCC 59.463 55.000 0.00 0.00 0.00 4.70
585 591 2.364972 CCCCCTTCTCTCTCTCTCTC 57.635 60.000 0.00 0.00 0.00 3.20
593 599 3.189606 TCTCTCTCTCTCTCCACCTTCT 58.810 50.000 0.00 0.00 0.00 2.85
601 607 0.336737 TCTCCACCTTCTCTCCCCTC 59.663 60.000 0.00 0.00 0.00 4.30
715 960 0.617935 TTGATTGATCTCCACGGGCA 59.382 50.000 0.00 0.00 0.00 5.36
797 1046 0.755698 TCCCTAACAGCTAGCTCCCG 60.756 60.000 16.15 6.64 0.00 5.14
876 1133 1.520666 CCGTCCCCACATCACCTAC 59.479 63.158 0.00 0.00 0.00 3.18
909 1166 1.371183 CCCCACAAGAACAGCTCGA 59.629 57.895 0.00 0.00 0.00 4.04
917 1174 3.119459 ACAAGAACAGCTCGATACGTCAT 60.119 43.478 0.00 0.00 0.00 3.06
963 1220 1.134340 ACCAAAAGACAGCACCGTGTA 60.134 47.619 0.00 0.00 0.00 2.90
970 1227 1.128692 GACAGCACCGTGTATTCTTGC 59.871 52.381 0.00 0.00 0.00 4.01
1062 1319 3.393970 CCCCTGCAGCTCCTCGAA 61.394 66.667 8.66 0.00 0.00 3.71
1422 1703 1.135094 CCATGCTCTCCACCATACCT 58.865 55.000 0.00 0.00 0.00 3.08
1471 1752 1.291877 CTCTCGTTTTGGAGGTGGCG 61.292 60.000 0.00 0.00 34.74 5.69
1584 1874 1.296068 GCTGCTGAGCTTCCACTCT 59.704 57.895 5.83 0.00 42.52 3.24
2116 2481 4.630644 ACTCACCATCAACATCAGAACT 57.369 40.909 0.00 0.00 0.00 3.01
2124 2489 5.587443 CCATCAACATCAGAACTAGCATCAA 59.413 40.000 0.00 0.00 0.00 2.57
2297 2662 2.227865 TCGCTTGTTATGGCTTTGTTCC 59.772 45.455 0.00 0.00 0.00 3.62
2298 2663 2.228822 CGCTTGTTATGGCTTTGTTCCT 59.771 45.455 0.00 0.00 0.00 3.36
2299 2664 3.670627 CGCTTGTTATGGCTTTGTTCCTC 60.671 47.826 0.00 0.00 0.00 3.71
2388 2757 4.567959 GCCATAAAAATCTTTGCAAGCGAT 59.432 37.500 0.00 3.34 0.00 4.58
2398 2770 2.820059 TGCAAGCGATATAGGTGGAG 57.180 50.000 0.00 0.00 0.00 3.86
2399 2771 2.039418 TGCAAGCGATATAGGTGGAGT 58.961 47.619 0.00 0.00 0.00 3.85
2414 2816 1.202114 TGGAGTGCCAATCGAATTTGC 59.798 47.619 0.00 0.00 42.49 3.68
2450 2852 4.798882 TGCCGATTAGGGTTTTATCCAAT 58.201 39.130 0.00 0.00 41.48 3.16
2456 2858 8.474831 CCGATTAGGGTTTTATCCAATTTCTTT 58.525 33.333 0.00 0.00 35.97 2.52
2477 2879 6.815641 TCTTTGAGAGAAGAGACATTATGCAC 59.184 38.462 0.00 0.00 32.19 4.57
2514 2916 5.164620 TGATTCTCCATGTTTGCTACTCA 57.835 39.130 0.00 0.00 0.00 3.41
2515 2917 5.748402 TGATTCTCCATGTTTGCTACTCAT 58.252 37.500 0.00 0.00 0.00 2.90
2522 2924 4.634004 CCATGTTTGCTACTCATTCCGTAA 59.366 41.667 0.00 0.00 0.00 3.18
2541 2943 9.585099 TTCCGTAAAGAAATATAAGAGCGTTTA 57.415 29.630 0.00 0.00 0.00 2.01
2542 2944 9.585099 TCCGTAAAGAAATATAAGAGCGTTTAA 57.415 29.630 0.00 0.00 0.00 1.52
2556 2958 8.920509 AAGAGCGTTTAAATGTAAAAGTGTTT 57.079 26.923 9.12 0.00 32.97 2.83
2618 3021 7.847096 TCTTTACAGATGGAGTAATAAGCACA 58.153 34.615 0.00 0.00 32.07 4.57
2622 3025 5.046304 ACAGATGGAGTAATAAGCACACACT 60.046 40.000 0.00 0.00 0.00 3.55
2664 3069 0.619255 TCAATTCCTCCCCCGCACTA 60.619 55.000 0.00 0.00 0.00 2.74
2672 3077 0.252375 TCCCCCGCACTAAACCTAGT 60.252 55.000 0.00 0.00 39.04 2.57
2785 3191 8.667987 TCGATCAATTTGAAACCTTAAATTCG 57.332 30.769 2.68 4.55 35.07 3.34
2847 3253 3.953542 ACTTCACCAAGTCTCCCTTTT 57.046 42.857 0.00 0.00 38.62 2.27
2920 3326 4.420522 AATGAGAGATGCTTCTTCCTCC 57.579 45.455 12.88 0.00 30.30 4.30
2948 3354 5.827797 AGTTGGAAGTGCAAGAAGAAATGTA 59.172 36.000 0.00 0.00 0.00 2.29
2949 3355 6.491403 AGTTGGAAGTGCAAGAAGAAATGTAT 59.509 34.615 0.00 0.00 0.00 2.29
2950 3356 6.258230 TGGAAGTGCAAGAAGAAATGTATG 57.742 37.500 0.00 0.00 0.00 2.39
2977 3384 4.780021 AGGAGTTCCATCTATCACACACTT 59.220 41.667 0.28 0.00 38.89 3.16
2979 3386 5.482908 GAGTTCCATCTATCACACACTTGT 58.517 41.667 0.00 0.00 35.84 3.16
3008 3416 5.707298 ACTCCAACTAACTTCAACATCCATG 59.293 40.000 0.00 0.00 0.00 3.66
3021 3429 1.693062 CATCCATGCTCAGCTAGGAGT 59.307 52.381 14.69 3.05 36.18 3.85
3025 3433 2.547642 CCATGCTCAGCTAGGAGTAAGC 60.548 54.545 0.00 0.00 40.40 3.09
3053 3461 1.080093 GACGGAGCCAATGACGACA 60.080 57.895 0.00 0.00 0.00 4.35
3092 3503 3.406682 GCGGAGGCTTGATTTGTTG 57.593 52.632 0.00 0.00 35.83 3.33
3093 3504 0.881118 GCGGAGGCTTGATTTGTTGA 59.119 50.000 0.00 0.00 35.83 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.758613 TTTCAAAACCGAATCTTTTGTAACC 57.241 32.000 7.33 0.00 38.95 2.85
25 26 9.761504 TCGTGGACGGATTATAAACATAATAAA 57.238 29.630 0.00 0.00 40.29 1.40
26 27 9.932207 ATCGTGGACGGATTATAAACATAATAA 57.068 29.630 0.00 0.00 40.29 1.40
27 28 9.361315 CATCGTGGACGGATTATAAACATAATA 57.639 33.333 0.00 0.00 40.29 0.98
28 29 7.148474 GCATCGTGGACGGATTATAAACATAAT 60.148 37.037 0.00 0.00 40.29 1.28
29 30 6.146510 GCATCGTGGACGGATTATAAACATAA 59.853 38.462 0.00 0.00 40.29 1.90
30 31 5.636121 GCATCGTGGACGGATTATAAACATA 59.364 40.000 0.00 0.00 40.29 2.29
31 32 4.451096 GCATCGTGGACGGATTATAAACAT 59.549 41.667 0.00 0.00 40.29 2.71
32 33 3.805422 GCATCGTGGACGGATTATAAACA 59.195 43.478 0.00 0.00 40.29 2.83
33 34 3.805422 TGCATCGTGGACGGATTATAAAC 59.195 43.478 0.00 0.00 40.29 2.01
34 35 4.055360 CTGCATCGTGGACGGATTATAAA 58.945 43.478 0.00 0.00 40.29 1.40
35 36 3.554129 CCTGCATCGTGGACGGATTATAA 60.554 47.826 0.00 0.00 40.29 0.98
36 37 2.029380 CCTGCATCGTGGACGGATTATA 60.029 50.000 0.00 0.00 40.29 0.98
37 38 1.270305 CCTGCATCGTGGACGGATTAT 60.270 52.381 0.00 0.00 40.29 1.28
38 39 0.104120 CCTGCATCGTGGACGGATTA 59.896 55.000 0.00 0.00 40.29 1.75
39 40 1.153369 CCTGCATCGTGGACGGATT 60.153 57.895 0.00 0.00 40.29 3.01
40 41 2.021068 CTCCTGCATCGTGGACGGAT 62.021 60.000 0.00 0.00 40.29 4.18
41 42 2.678580 TCCTGCATCGTGGACGGA 60.679 61.111 0.00 0.00 40.29 4.69
42 43 1.663379 TACTCCTGCATCGTGGACGG 61.663 60.000 0.00 0.00 40.29 4.79
43 44 0.385751 ATACTCCTGCATCGTGGACG 59.614 55.000 0.00 0.00 41.45 4.79
44 45 1.137086 ACATACTCCTGCATCGTGGAC 59.863 52.381 0.00 0.00 0.00 4.02
45 46 1.136891 CACATACTCCTGCATCGTGGA 59.863 52.381 0.00 0.00 0.00 4.02
46 47 1.575244 CACATACTCCTGCATCGTGG 58.425 55.000 0.00 0.00 0.00 4.94
47 48 1.134699 ACCACATACTCCTGCATCGTG 60.135 52.381 0.00 0.00 0.00 4.35
48 49 1.195115 ACCACATACTCCTGCATCGT 58.805 50.000 0.00 0.00 0.00 3.73
49 50 2.315925 AACCACATACTCCTGCATCG 57.684 50.000 0.00 0.00 0.00 3.84
50 51 5.590259 ACATTTAACCACATACTCCTGCATC 59.410 40.000 0.00 0.00 0.00 3.91
51 52 5.509498 ACATTTAACCACATACTCCTGCAT 58.491 37.500 0.00 0.00 0.00 3.96
52 53 4.917385 ACATTTAACCACATACTCCTGCA 58.083 39.130 0.00 0.00 0.00 4.41
53 54 5.186198 AGACATTTAACCACATACTCCTGC 58.814 41.667 0.00 0.00 0.00 4.85
54 55 6.094048 CCAAGACATTTAACCACATACTCCTG 59.906 42.308 0.00 0.00 0.00 3.86
55 56 6.012858 TCCAAGACATTTAACCACATACTCCT 60.013 38.462 0.00 0.00 0.00 3.69
56 57 6.177610 TCCAAGACATTTAACCACATACTCC 58.822 40.000 0.00 0.00 0.00 3.85
57 58 6.316390 CCTCCAAGACATTTAACCACATACTC 59.684 42.308 0.00 0.00 0.00 2.59
58 59 6.012858 TCCTCCAAGACATTTAACCACATACT 60.013 38.462 0.00 0.00 0.00 2.12
59 60 6.093633 GTCCTCCAAGACATTTAACCACATAC 59.906 42.308 0.00 0.00 36.73 2.39
60 61 6.177610 GTCCTCCAAGACATTTAACCACATA 58.822 40.000 0.00 0.00 36.73 2.29
61 62 5.010282 GTCCTCCAAGACATTTAACCACAT 58.990 41.667 0.00 0.00 36.73 3.21
62 63 4.141367 TGTCCTCCAAGACATTTAACCACA 60.141 41.667 0.00 0.00 41.78 4.17
63 64 4.394729 TGTCCTCCAAGACATTTAACCAC 58.605 43.478 0.00 0.00 41.78 4.16
64 65 4.104102 ACTGTCCTCCAAGACATTTAACCA 59.896 41.667 0.00 0.00 45.39 3.67
65 66 4.455877 CACTGTCCTCCAAGACATTTAACC 59.544 45.833 0.00 0.00 45.39 2.85
66 67 4.455877 CCACTGTCCTCCAAGACATTTAAC 59.544 45.833 0.00 0.00 45.39 2.01
67 68 4.104102 ACCACTGTCCTCCAAGACATTTAA 59.896 41.667 0.00 0.00 45.39 1.52
68 69 3.650942 ACCACTGTCCTCCAAGACATTTA 59.349 43.478 0.00 0.00 45.39 1.40
69 70 2.443255 ACCACTGTCCTCCAAGACATTT 59.557 45.455 0.00 0.00 45.39 2.32
70 71 2.057922 ACCACTGTCCTCCAAGACATT 58.942 47.619 0.00 0.00 45.39 2.71
71 72 1.734655 ACCACTGTCCTCCAAGACAT 58.265 50.000 0.00 0.00 45.39 3.06
72 73 1.968493 GTACCACTGTCCTCCAAGACA 59.032 52.381 0.00 0.00 44.38 3.41
73 74 1.275573 GGTACCACTGTCCTCCAAGAC 59.724 57.143 7.15 0.00 37.28 3.01
74 75 1.640917 GGTACCACTGTCCTCCAAGA 58.359 55.000 7.15 0.00 0.00 3.02
89 90 4.168101 TGATCCCTCATAGATTGGGGTAC 58.832 47.826 0.00 0.00 45.60 3.34
90 91 4.502036 TGATCCCTCATAGATTGGGGTA 57.498 45.455 0.00 0.00 45.60 3.69
91 92 3.367280 TGATCCCTCATAGATTGGGGT 57.633 47.619 0.00 0.00 45.60 4.95
92 93 4.401925 GTTTGATCCCTCATAGATTGGGG 58.598 47.826 0.00 0.00 46.75 4.96
93 94 4.401925 GGTTTGATCCCTCATAGATTGGG 58.598 47.826 0.00 0.00 42.20 4.12
94 95 4.401925 GGGTTTGATCCCTCATAGATTGG 58.598 47.826 0.00 0.00 43.85 3.16
105 106 3.877508 CGTCAAATCTAGGGTTTGATCCC 59.122 47.826 19.91 11.17 44.56 3.85
106 107 4.332819 CACGTCAAATCTAGGGTTTGATCC 59.667 45.833 19.91 11.64 44.56 3.36
107 108 4.935808 ACACGTCAAATCTAGGGTTTGATC 59.064 41.667 19.91 14.64 44.56 2.92
108 109 4.906618 ACACGTCAAATCTAGGGTTTGAT 58.093 39.130 19.91 8.62 44.56 2.57
109 110 4.345859 ACACGTCAAATCTAGGGTTTGA 57.654 40.909 15.67 15.67 41.75 2.69
110 111 4.513692 TCAACACGTCAAATCTAGGGTTTG 59.486 41.667 12.53 12.53 37.79 2.93
111 112 4.710324 TCAACACGTCAAATCTAGGGTTT 58.290 39.130 0.00 0.00 0.00 3.27
112 113 4.345859 TCAACACGTCAAATCTAGGGTT 57.654 40.909 0.00 0.00 0.00 4.11
113 114 4.253685 CATCAACACGTCAAATCTAGGGT 58.746 43.478 0.00 0.00 0.00 4.34
114 115 4.253685 ACATCAACACGTCAAATCTAGGG 58.746 43.478 0.00 0.00 0.00 3.53
115 116 5.171476 AGACATCAACACGTCAAATCTAGG 58.829 41.667 0.00 0.00 34.48 3.02
116 117 6.712241 AAGACATCAACACGTCAAATCTAG 57.288 37.500 0.00 0.00 34.48 2.43
117 118 9.863845 TTATAAGACATCAACACGTCAAATCTA 57.136 29.630 0.00 0.00 34.48 1.98
118 119 8.771920 TTATAAGACATCAACACGTCAAATCT 57.228 30.769 0.00 0.00 34.48 2.40
119 120 9.478019 CTTTATAAGACATCAACACGTCAAATC 57.522 33.333 0.00 0.00 34.48 2.17
120 121 8.450964 CCTTTATAAGACATCAACACGTCAAAT 58.549 33.333 0.00 0.00 34.48 2.32
121 122 7.572353 GCCTTTATAAGACATCAACACGTCAAA 60.572 37.037 0.00 0.00 34.48 2.69
122 123 6.128391 GCCTTTATAAGACATCAACACGTCAA 60.128 38.462 0.00 0.00 34.48 3.18
123 124 5.350365 GCCTTTATAAGACATCAACACGTCA 59.650 40.000 0.00 0.00 34.48 4.35
124 125 5.350365 TGCCTTTATAAGACATCAACACGTC 59.650 40.000 0.00 0.00 0.00 4.34
125 126 5.242434 TGCCTTTATAAGACATCAACACGT 58.758 37.500 0.00 0.00 0.00 4.49
126 127 5.580691 TCTGCCTTTATAAGACATCAACACG 59.419 40.000 0.00 0.00 0.00 4.49
127 128 6.985188 TCTGCCTTTATAAGACATCAACAC 57.015 37.500 0.00 0.00 0.00 3.32
128 129 6.939730 TGTTCTGCCTTTATAAGACATCAACA 59.060 34.615 0.00 0.00 0.00 3.33
129 130 7.377766 TGTTCTGCCTTTATAAGACATCAAC 57.622 36.000 0.00 0.00 0.00 3.18
130 131 8.579850 AATGTTCTGCCTTTATAAGACATCAA 57.420 30.769 0.00 0.00 0.00 2.57
131 132 8.049117 AGAATGTTCTGCCTTTATAAGACATCA 58.951 33.333 0.00 0.00 35.89 3.07
132 133 8.443953 AGAATGTTCTGCCTTTATAAGACATC 57.556 34.615 0.00 0.00 35.89 3.06
133 134 8.814038 AAGAATGTTCTGCCTTTATAAGACAT 57.186 30.769 0.00 0.00 37.65 3.06
134 135 8.268850 GAAGAATGTTCTGCCTTTATAAGACA 57.731 34.615 0.00 0.00 37.65 3.41
146 147 1.672881 CCCGATGGAAGAATGTTCTGC 59.327 52.381 0.00 0.00 37.65 4.26
147 148 3.201290 CTCCCGATGGAAGAATGTTCTG 58.799 50.000 0.00 0.00 41.17 3.02
148 149 2.171448 CCTCCCGATGGAAGAATGTTCT 59.829 50.000 0.00 0.00 41.17 3.01
149 150 2.565841 CCTCCCGATGGAAGAATGTTC 58.434 52.381 0.00 0.00 41.17 3.18
150 151 1.408822 GCCTCCCGATGGAAGAATGTT 60.409 52.381 0.00 0.00 41.17 2.71
151 152 0.181350 GCCTCCCGATGGAAGAATGT 59.819 55.000 0.00 0.00 41.17 2.71
152 153 0.181114 TGCCTCCCGATGGAAGAATG 59.819 55.000 0.00 0.00 41.17 2.67
153 154 0.918983 TTGCCTCCCGATGGAAGAAT 59.081 50.000 0.00 0.00 41.17 2.40
154 155 0.918983 ATTGCCTCCCGATGGAAGAA 59.081 50.000 0.00 0.00 41.17 2.52
155 156 0.181114 CATTGCCTCCCGATGGAAGA 59.819 55.000 0.00 0.00 41.17 2.87
156 157 0.107017 ACATTGCCTCCCGATGGAAG 60.107 55.000 0.00 0.00 41.17 3.46
157 158 0.331278 AACATTGCCTCCCGATGGAA 59.669 50.000 0.00 0.00 41.17 3.53
158 159 0.107214 GAACATTGCCTCCCGATGGA 60.107 55.000 0.00 0.00 39.29 3.41
159 160 1.103398 GGAACATTGCCTCCCGATGG 61.103 60.000 0.00 0.00 39.29 3.51
160 161 1.103398 GGGAACATTGCCTCCCGATG 61.103 60.000 8.31 0.00 42.03 3.84
161 162 1.227383 GGGAACATTGCCTCCCGAT 59.773 57.895 8.31 0.00 42.03 4.18
162 163 2.674754 GGGAACATTGCCTCCCGA 59.325 61.111 8.31 0.00 42.03 5.14
164 165 1.749258 GACGGGAACATTGCCTCCC 60.749 63.158 12.53 12.53 46.97 4.30
165 166 2.106683 CGACGGGAACATTGCCTCC 61.107 63.158 0.39 0.00 36.39 4.30
166 167 0.953960 AACGACGGGAACATTGCCTC 60.954 55.000 0.00 0.00 36.39 4.70
167 168 0.322322 TAACGACGGGAACATTGCCT 59.678 50.000 0.00 0.00 36.39 4.75
168 169 0.725117 CTAACGACGGGAACATTGCC 59.275 55.000 0.00 0.00 35.00 4.52
169 170 0.096454 GCTAACGACGGGAACATTGC 59.904 55.000 0.00 0.00 0.00 3.56
170 171 0.368907 CGCTAACGACGGGAACATTG 59.631 55.000 0.00 0.00 43.93 2.82
171 172 0.244450 TCGCTAACGACGGGAACATT 59.756 50.000 0.00 0.00 45.12 2.71
172 173 0.179145 CTCGCTAACGACGGGAACAT 60.179 55.000 0.00 0.00 45.12 2.71
173 174 1.210931 CTCGCTAACGACGGGAACA 59.789 57.895 0.00 0.00 45.12 3.18
174 175 0.796113 GTCTCGCTAACGACGGGAAC 60.796 60.000 0.00 0.00 42.62 3.62
175 176 1.236616 TGTCTCGCTAACGACGGGAA 61.237 55.000 0.00 0.00 42.62 3.97
176 177 1.672030 TGTCTCGCTAACGACGGGA 60.672 57.895 0.00 0.00 45.12 5.14
177 178 1.513586 GTGTCTCGCTAACGACGGG 60.514 63.158 0.00 0.00 45.12 5.28
178 179 1.513586 GGTGTCTCGCTAACGACGG 60.514 63.158 0.00 0.00 45.12 4.79
179 180 0.109873 AAGGTGTCTCGCTAACGACG 60.110 55.000 0.00 0.00 45.12 5.12
180 181 2.907910 TAAGGTGTCTCGCTAACGAC 57.092 50.000 0.00 0.00 45.12 4.34
181 182 7.889511 CTTAAGATTAAGGTGTCTCGCTAACGA 60.890 40.741 0.00 0.00 40.17 3.85
182 183 4.030134 AGATTAAGGTGTCTCGCTAACG 57.970 45.455 0.00 0.00 42.01 3.18
183 184 7.256286 TCTTAAGATTAAGGTGTCTCGCTAAC 58.744 38.462 0.00 0.00 40.35 2.34
184 185 7.400599 TCTTAAGATTAAGGTGTCTCGCTAA 57.599 36.000 0.00 0.00 40.35 3.09
185 186 7.502895 AGATCTTAAGATTAAGGTGTCTCGCTA 59.497 37.037 18.88 0.00 40.35 4.26
186 187 5.916661 TCTTAAGATTAAGGTGTCTCGCT 57.083 39.130 0.00 0.00 40.35 4.93
187 188 6.419413 CAGATCTTAAGATTAAGGTGTCTCGC 59.581 42.308 18.88 2.13 40.35 5.03
188 189 6.920758 CCAGATCTTAAGATTAAGGTGTCTCG 59.079 42.308 18.88 0.00 40.35 4.04
189 190 6.704050 GCCAGATCTTAAGATTAAGGTGTCTC 59.296 42.308 18.88 3.61 40.35 3.36
190 191 6.385467 AGCCAGATCTTAAGATTAAGGTGTCT 59.615 38.462 18.88 7.22 40.35 3.41
191 192 6.587273 AGCCAGATCTTAAGATTAAGGTGTC 58.413 40.000 18.88 5.01 40.35 3.67
192 193 6.156949 TGAGCCAGATCTTAAGATTAAGGTGT 59.843 38.462 18.88 11.96 40.35 4.16
193 194 6.586344 TGAGCCAGATCTTAAGATTAAGGTG 58.414 40.000 18.88 11.15 40.35 4.00
194 195 6.385467 ACTGAGCCAGATCTTAAGATTAAGGT 59.615 38.462 18.88 14.68 36.83 3.50
195 196 6.825610 ACTGAGCCAGATCTTAAGATTAAGG 58.174 40.000 18.88 19.28 37.05 2.69
196 197 8.729805 AAACTGAGCCAGATCTTAAGATTAAG 57.270 34.615 18.88 11.28 37.37 1.85
198 199 9.988815 GATAAACTGAGCCAGATCTTAAGATTA 57.011 33.333 18.88 4.60 34.37 1.75
199 200 7.655328 CGATAAACTGAGCCAGATCTTAAGATT 59.345 37.037 18.88 2.86 34.37 2.40
200 201 7.014711 TCGATAAACTGAGCCAGATCTTAAGAT 59.985 37.037 17.96 17.96 37.51 2.40
201 202 6.321435 TCGATAAACTGAGCCAGATCTTAAGA 59.679 38.462 7.82 7.82 35.18 2.10
202 203 6.507900 TCGATAAACTGAGCCAGATCTTAAG 58.492 40.000 8.91 0.00 35.18 1.85
203 204 6.465439 TCGATAAACTGAGCCAGATCTTAA 57.535 37.500 8.91 0.00 35.18 1.85
204 205 6.321435 TCTTCGATAAACTGAGCCAGATCTTA 59.679 38.462 8.91 4.68 35.18 2.10
205 206 5.127845 TCTTCGATAAACTGAGCCAGATCTT 59.872 40.000 8.91 3.00 35.18 2.40
206 207 4.646945 TCTTCGATAAACTGAGCCAGATCT 59.353 41.667 8.91 0.00 35.18 2.75
207 208 4.938080 TCTTCGATAAACTGAGCCAGATC 58.062 43.478 8.91 0.00 35.18 2.75
208 209 5.543507 ATCTTCGATAAACTGAGCCAGAT 57.456 39.130 8.91 0.00 35.18 2.90
209 210 5.594725 AGTATCTTCGATAAACTGAGCCAGA 59.405 40.000 8.91 0.00 35.18 3.86
210 211 5.837437 AGTATCTTCGATAAACTGAGCCAG 58.163 41.667 0.00 1.16 37.52 4.85
211 212 5.359860 TGAGTATCTTCGATAAACTGAGCCA 59.640 40.000 0.00 0.00 34.92 4.75
212 213 5.833082 TGAGTATCTTCGATAAACTGAGCC 58.167 41.667 0.00 0.00 34.92 4.70
213 214 7.753132 CCTATGAGTATCTTCGATAAACTGAGC 59.247 40.741 0.00 0.00 34.92 4.26
214 215 9.004717 TCCTATGAGTATCTTCGATAAACTGAG 57.995 37.037 0.00 0.00 34.92 3.35
215 216 8.919777 TCCTATGAGTATCTTCGATAAACTGA 57.080 34.615 0.00 0.00 34.92 3.41
216 217 7.753132 GCTCCTATGAGTATCTTCGATAAACTG 59.247 40.741 0.00 0.00 40.95 3.16
217 218 7.094118 GGCTCCTATGAGTATCTTCGATAAACT 60.094 40.741 0.00 0.00 40.95 2.66
218 219 7.030768 GGCTCCTATGAGTATCTTCGATAAAC 58.969 42.308 0.00 0.00 40.95 2.01
219 220 6.948886 AGGCTCCTATGAGTATCTTCGATAAA 59.051 38.462 0.00 0.00 40.95 1.40
220 221 6.375736 CAGGCTCCTATGAGTATCTTCGATAA 59.624 42.308 0.00 0.00 40.95 1.75
221 222 5.883115 CAGGCTCCTATGAGTATCTTCGATA 59.117 44.000 0.00 0.00 40.95 2.92
222 223 4.704540 CAGGCTCCTATGAGTATCTTCGAT 59.295 45.833 0.00 0.00 40.95 3.59
223 224 4.075682 CAGGCTCCTATGAGTATCTTCGA 58.924 47.826 0.00 0.00 40.95 3.71
224 225 3.192422 CCAGGCTCCTATGAGTATCTTCG 59.808 52.174 0.00 0.00 40.95 3.79
225 226 3.513515 CCCAGGCTCCTATGAGTATCTTC 59.486 52.174 0.00 0.00 40.95 2.87
226 227 3.116551 ACCCAGGCTCCTATGAGTATCTT 60.117 47.826 0.00 0.00 40.95 2.40
227 228 2.452823 ACCCAGGCTCCTATGAGTATCT 59.547 50.000 0.00 0.00 40.95 1.98
228 229 2.896039 ACCCAGGCTCCTATGAGTATC 58.104 52.381 0.00 0.00 40.95 2.24
229 230 4.701333 ATACCCAGGCTCCTATGAGTAT 57.299 45.455 0.00 0.00 40.95 2.12
230 231 4.140782 TCAATACCCAGGCTCCTATGAGTA 60.141 45.833 0.00 0.00 40.95 2.59
231 232 2.975489 CAATACCCAGGCTCCTATGAGT 59.025 50.000 0.00 0.00 40.95 3.41
232 233 3.242867 TCAATACCCAGGCTCCTATGAG 58.757 50.000 0.00 0.00 41.84 2.90
233 234 3.344535 TCAATACCCAGGCTCCTATGA 57.655 47.619 0.00 0.00 0.00 2.15
234 235 4.647564 ATTCAATACCCAGGCTCCTATG 57.352 45.455 0.00 0.00 0.00 2.23
235 236 5.280011 CGTAATTCAATACCCAGGCTCCTAT 60.280 44.000 0.00 0.00 0.00 2.57
236 237 4.039973 CGTAATTCAATACCCAGGCTCCTA 59.960 45.833 0.00 0.00 0.00 2.94
237 238 3.181454 CGTAATTCAATACCCAGGCTCCT 60.181 47.826 0.00 0.00 0.00 3.69
238 239 3.139077 CGTAATTCAATACCCAGGCTCC 58.861 50.000 0.00 0.00 0.00 4.70
239 240 3.805207 ACGTAATTCAATACCCAGGCTC 58.195 45.455 0.00 0.00 0.00 4.70
240 241 3.926058 ACGTAATTCAATACCCAGGCT 57.074 42.857 0.00 0.00 0.00 4.58
241 242 4.700700 AGTACGTAATTCAATACCCAGGC 58.299 43.478 0.00 0.00 0.00 4.85
242 243 5.756833 GGAAGTACGTAATTCAATACCCAGG 59.243 44.000 30.09 0.00 32.39 4.45
243 244 6.579865 AGGAAGTACGTAATTCAATACCCAG 58.420 40.000 30.09 0.00 32.39 4.45
244 245 6.407299 GGAGGAAGTACGTAATTCAATACCCA 60.407 42.308 30.09 0.00 32.39 4.51
245 246 5.987953 GGAGGAAGTACGTAATTCAATACCC 59.012 44.000 30.09 20.12 32.39 3.69
246 247 5.689068 CGGAGGAAGTACGTAATTCAATACC 59.311 44.000 30.09 23.99 32.39 2.73
247 248 6.268566 ACGGAGGAAGTACGTAATTCAATAC 58.731 40.000 30.09 20.12 39.30 1.89
248 249 6.455360 ACGGAGGAAGTACGTAATTCAATA 57.545 37.500 30.09 0.00 39.30 1.90
249 250 5.334724 ACGGAGGAAGTACGTAATTCAAT 57.665 39.130 30.09 20.75 39.30 2.57
250 251 4.789012 ACGGAGGAAGTACGTAATTCAA 57.211 40.909 30.09 0.00 39.30 2.69
251 252 5.895636 TTACGGAGGAAGTACGTAATTCA 57.104 39.130 30.09 11.54 44.90 2.57
256 257 5.957842 TTTCTTTACGGAGGAAGTACGTA 57.042 39.130 0.00 0.00 41.53 3.57
257 258 4.853924 TTTCTTTACGGAGGAAGTACGT 57.146 40.909 0.00 0.00 43.88 3.57
258 259 6.324819 TGTATTTCTTTACGGAGGAAGTACG 58.675 40.000 10.87 0.00 36.01 3.67
259 260 8.031277 TCTTGTATTTCTTTACGGAGGAAGTAC 58.969 37.037 9.53 9.53 34.78 2.73
260 261 8.125978 TCTTGTATTTCTTTACGGAGGAAGTA 57.874 34.615 0.00 0.00 0.00 2.24
261 262 7.001099 TCTTGTATTTCTTTACGGAGGAAGT 57.999 36.000 0.00 0.00 0.00 3.01
262 263 7.097834 ACTCTTGTATTTCTTTACGGAGGAAG 58.902 38.462 0.00 0.00 33.11 3.46
263 264 7.001099 ACTCTTGTATTTCTTTACGGAGGAA 57.999 36.000 0.00 0.00 33.11 3.36
264 265 6.600882 ACTCTTGTATTTCTTTACGGAGGA 57.399 37.500 0.00 0.00 33.11 3.71
265 266 8.943909 AATACTCTTGTATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 44.35 4.30
341 342 9.723601 AGGTTTCACATACATGCAATTTTATTT 57.276 25.926 0.00 0.00 0.00 1.40
342 343 9.153721 CAGGTTTCACATACATGCAATTTTATT 57.846 29.630 0.00 0.00 0.00 1.40
343 344 8.313292 ACAGGTTTCACATACATGCAATTTTAT 58.687 29.630 0.00 0.00 30.90 1.40
344 345 7.665690 ACAGGTTTCACATACATGCAATTTTA 58.334 30.769 0.00 0.00 30.90 1.52
345 346 6.523840 ACAGGTTTCACATACATGCAATTTT 58.476 32.000 0.00 0.00 30.90 1.82
346 347 6.100404 ACAGGTTTCACATACATGCAATTT 57.900 33.333 0.00 0.00 30.90 1.82
347 348 5.726980 ACAGGTTTCACATACATGCAATT 57.273 34.783 0.00 0.00 30.90 2.32
348 349 5.709631 TGTACAGGTTTCACATACATGCAAT 59.290 36.000 0.00 0.00 30.90 3.56
349 350 5.066593 TGTACAGGTTTCACATACATGCAA 58.933 37.500 0.00 0.00 30.90 4.08
350 351 4.646572 TGTACAGGTTTCACATACATGCA 58.353 39.130 0.00 0.00 30.90 3.96
351 352 5.621197 TTGTACAGGTTTCACATACATGC 57.379 39.130 0.00 0.00 30.90 4.06
352 353 7.433708 TCTTTGTACAGGTTTCACATACATG 57.566 36.000 0.00 0.00 33.79 3.21
353 354 7.174946 CCTTCTTTGTACAGGTTTCACATACAT 59.825 37.037 0.00 0.00 0.00 2.29
354 355 6.485313 CCTTCTTTGTACAGGTTTCACATACA 59.515 38.462 0.00 0.00 0.00 2.29
355 356 6.072673 CCCTTCTTTGTACAGGTTTCACATAC 60.073 42.308 0.00 0.00 0.00 2.39
356 357 6.001460 CCCTTCTTTGTACAGGTTTCACATA 58.999 40.000 0.00 0.00 0.00 2.29
357 358 4.827284 CCCTTCTTTGTACAGGTTTCACAT 59.173 41.667 0.00 0.00 0.00 3.21
584 590 1.392534 GGAGGGGAGAGAAGGTGGA 59.607 63.158 0.00 0.00 0.00 4.02
585 591 1.690985 GGGAGGGGAGAGAAGGTGG 60.691 68.421 0.00 0.00 0.00 4.61
593 599 2.293184 GCATATGATAGGGGAGGGGAGA 60.293 54.545 6.97 0.00 0.00 3.71
601 607 2.122768 GGGAGGAGCATATGATAGGGG 58.877 57.143 6.97 0.00 0.00 4.79
673 918 7.865385 TCAACAAGCACTATTTTATGGTGTTTC 59.135 33.333 3.07 0.00 41.69 2.78
715 960 4.196118 TGATGATGAGAGAGAGATGGGT 57.804 45.455 0.00 0.00 0.00 4.51
797 1046 1.745232 TCGAACAGGAGAGAGAGAGC 58.255 55.000 0.00 0.00 0.00 4.09
876 1133 2.278330 GGGGTTTTGCTCAGCTGGG 61.278 63.158 15.13 12.70 0.00 4.45
909 1166 0.101759 CGGTGGGTTCGATGACGTAT 59.898 55.000 0.00 0.00 40.69 3.06
917 1174 2.029964 GTTGAGCGGTGGGTTCGA 59.970 61.111 0.00 0.00 0.00 3.71
963 1220 4.756642 CCATGGACATATACACGCAAGAAT 59.243 41.667 5.56 0.00 43.62 2.40
970 1227 2.839486 AGGCCATGGACATATACACG 57.161 50.000 22.78 0.00 0.00 4.49
1062 1319 2.876079 GCACGGATGTTCCTCCTTCTTT 60.876 50.000 0.00 0.00 33.30 2.52
1074 1331 1.690219 GGGAGATGGAGCACGGATGT 61.690 60.000 0.00 0.00 0.00 3.06
1338 1619 4.284550 ATGGTGCCTGTGCCGGTT 62.285 61.111 1.90 0.00 36.33 4.44
1458 1739 3.283684 CGTGCGCCACCTCCAAAA 61.284 61.111 4.18 0.00 0.00 2.44
1536 1817 1.990060 CGAGGAGGTGGTGGTGGAT 60.990 63.158 0.00 0.00 0.00 3.41
1685 1981 0.455410 TTGCTGTTGCTGTTGGTGTC 59.545 50.000 0.00 0.00 40.48 3.67
1968 2327 2.271497 GCTGCTGCTGATCCACCT 59.729 61.111 10.92 0.00 36.03 4.00
2044 2409 3.998672 GGTGACCTCCAACGCGGA 61.999 66.667 12.47 0.00 43.61 5.54
2116 2481 2.011947 GTGCTGCAGATGTTGATGCTA 58.988 47.619 20.43 0.00 42.98 3.49
2124 2489 4.415150 CCCCCGTGCTGCAGATGT 62.415 66.667 20.43 0.00 0.00 3.06
2168 2533 2.615262 GAAGCCCTACGAGTCGCTGG 62.615 65.000 13.59 14.49 0.00 4.85
2297 2662 1.470098 CCGTGCAAGAATTTGGAGGAG 59.530 52.381 0.00 0.00 41.30 3.69
2298 2663 1.202879 ACCGTGCAAGAATTTGGAGGA 60.203 47.619 0.00 0.00 41.30 3.71
2299 2664 1.247567 ACCGTGCAAGAATTTGGAGG 58.752 50.000 0.00 0.00 39.36 4.30
2388 2757 2.673258 TCGATTGGCACTCCACCTATA 58.327 47.619 0.00 0.00 43.33 1.31
2450 2852 7.879677 TGCATAATGTCTCTTCTCTCAAAGAAA 59.120 33.333 0.00 0.00 43.39 2.52
2456 2858 5.658468 CTGTGCATAATGTCTCTTCTCTCA 58.342 41.667 0.00 0.00 0.00 3.27
2477 2879 5.646967 GAGAATCAATGGCAGCCATGCTG 62.647 52.174 28.35 22.13 44.40 4.41
2493 2895 6.238593 GGAATGAGTAGCAAACATGGAGAATC 60.239 42.308 0.00 0.00 0.00 2.52
2514 2916 8.658499 AACGCTCTTATATTTCTTTACGGAAT 57.342 30.769 0.00 0.00 0.00 3.01
2515 2917 8.483307 AAACGCTCTTATATTTCTTTACGGAA 57.517 30.769 0.00 0.00 0.00 4.30
2594 2997 7.549134 TGTGTGCTTATTACTCCATCTGTAAAG 59.451 37.037 0.00 0.00 34.20 1.85
2603 3006 3.751175 GCAAGTGTGTGCTTATTACTCCA 59.249 43.478 0.00 0.00 41.51 3.86
2639 3043 1.691219 GGGGAGGAATTGACTGGCA 59.309 57.895 0.00 0.00 0.00 4.92
2647 3051 0.996583 TTTAGTGCGGGGGAGGAATT 59.003 50.000 0.00 0.00 0.00 2.17
2664 3069 0.252835 TCCCGGGCCTAACTAGGTTT 60.253 55.000 18.49 0.00 45.42 3.27
2672 3077 3.018805 CCCCTTTCCCGGGCCTAA 61.019 66.667 18.49 9.03 43.25 2.69
2781 3186 6.183347 AGATTCATGGAAGGACTTTTCGAAT 58.817 36.000 0.00 0.00 0.00 3.34
2782 3187 5.560724 AGATTCATGGAAGGACTTTTCGAA 58.439 37.500 0.00 0.00 0.00 3.71
2785 3191 5.825151 CCCTAGATTCATGGAAGGACTTTTC 59.175 44.000 0.00 0.00 0.00 2.29
2847 3253 1.133915 ACCTGAAGCCTTCGACCAAAA 60.134 47.619 0.00 0.00 0.00 2.44
2898 3304 5.215069 AGGAGGAAGAAGCATCTCTCATTA 58.785 41.667 9.17 0.00 33.77 1.90
2901 3307 3.030291 GAGGAGGAAGAAGCATCTCTCA 58.970 50.000 9.17 0.00 33.77 3.27
2920 3326 3.879295 TCTTCTTGCACTTCCAACTTGAG 59.121 43.478 0.00 0.00 0.00 3.02
2948 3354 7.290948 TGTGTGATAGATGGAACTCCTATTCAT 59.709 37.037 0.00 0.00 36.82 2.57
2949 3355 6.611236 TGTGTGATAGATGGAACTCCTATTCA 59.389 38.462 0.00 0.00 36.82 2.57
2950 3356 6.926272 GTGTGTGATAGATGGAACTCCTATTC 59.074 42.308 0.00 0.00 36.82 1.75
2977 3384 3.452990 TGAAGTTAGTTGGAGTGTGGACA 59.547 43.478 0.00 0.00 0.00 4.02
2979 3386 4.080807 TGTTGAAGTTAGTTGGAGTGTGGA 60.081 41.667 0.00 0.00 0.00 4.02
3021 3429 1.080093 CCGTCTCGTTGGCAGCTTA 60.080 57.895 0.00 0.00 0.00 3.09
3025 3433 2.811317 GCTCCGTCTCGTTGGCAG 60.811 66.667 0.00 0.00 0.00 4.85
3088 3499 4.263572 CCACCCCGCACCTCAACA 62.264 66.667 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.