Multiple sequence alignment - TraesCS7B01G091800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G091800 chr7B 100.000 3064 0 0 1 3064 105256580 105259643 0.000000e+00 5659
1 TraesCS7B01G091800 chr7B 92.043 465 35 2 2595 3057 174688628 174689092 0.000000e+00 652
2 TraesCS7B01G091800 chr3B 95.728 2622 82 9 1 2596 101919030 101921647 0.000000e+00 4194
3 TraesCS7B01G091800 chr3B 91.507 471 39 1 2595 3064 452849153 452848683 0.000000e+00 647
4 TraesCS7B01G091800 chr3B 95.735 211 7 2 2386 2596 430241387 430241179 3.780000e-89 339
5 TraesCS7B01G091800 chr5D 95.236 2624 89 11 1 2596 503287314 503284699 0.000000e+00 4120
6 TraesCS7B01G091800 chr5D 95.042 2622 95 14 1 2596 6180931 6183543 0.000000e+00 4089
7 TraesCS7B01G091800 chr5D 94.631 2626 104 13 1 2596 120799885 120797267 0.000000e+00 4034
8 TraesCS7B01G091800 chr5D 93.961 2335 125 9 1 2330 513639685 513642008 0.000000e+00 3517
9 TraesCS7B01G091800 chr6D 94.787 2628 93 12 1 2596 45511556 45514171 0.000000e+00 4054
10 TraesCS7B01G091800 chr1D 94.548 2623 109 9 1 2596 51878058 51880673 0.000000e+00 4021
11 TraesCS7B01G091800 chr2A 95.663 2398 95 6 1 2392 335830613 335833007 0.000000e+00 3843
12 TraesCS7B01G091800 chr4A 93.222 2626 131 18 1 2596 310730586 310733194 0.000000e+00 3819
13 TraesCS7B01G091800 chr4A 96.569 204 5 2 2394 2596 73808261 73808463 1.360000e-88 337
14 TraesCS7B01G091800 chrUn 95.082 671 13 3 1945 2596 442413364 442414033 0.000000e+00 1038
15 TraesCS7B01G091800 chrUn 91.543 473 35 5 2595 3064 102092636 102092166 0.000000e+00 647
16 TraesCS7B01G091800 chr5B 91.507 471 38 2 2595 3064 179850710 179851179 0.000000e+00 647
17 TraesCS7B01G091800 chr1B 91.471 469 38 2 2598 3064 406566428 406565960 0.000000e+00 643
18 TraesCS7B01G091800 chr7D 91.295 471 39 2 2595 3064 511878711 511878242 2.580000e-180 641
19 TraesCS7B01G091800 chr7D 91.295 471 38 3 2596 3064 206958136 206958605 9.260000e-180 640
20 TraesCS7B01G091800 chr7D 91.121 473 38 3 2593 3064 276498066 276497597 3.330000e-179 638
21 TraesCS7B01G091800 chr4D 90.966 476 37 3 2595 3064 45251629 45251154 1.200000e-178 636
22 TraesCS7B01G091800 chr6B 95.775 213 8 1 2384 2596 625949360 625949571 2.930000e-90 342
23 TraesCS7B01G091800 chr1A 95.755 212 7 2 2386 2596 4010947 4011157 1.050000e-89 340
24 TraesCS7B01G091800 chr2B 95.261 211 9 1 2386 2596 782436275 782436066 1.760000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G091800 chr7B 105256580 105259643 3063 False 5659 5659 100.000 1 3064 1 chr7B.!!$F1 3063
1 TraesCS7B01G091800 chr3B 101919030 101921647 2617 False 4194 4194 95.728 1 2596 1 chr3B.!!$F1 2595
2 TraesCS7B01G091800 chr5D 503284699 503287314 2615 True 4120 4120 95.236 1 2596 1 chr5D.!!$R2 2595
3 TraesCS7B01G091800 chr5D 6180931 6183543 2612 False 4089 4089 95.042 1 2596 1 chr5D.!!$F1 2595
4 TraesCS7B01G091800 chr5D 120797267 120799885 2618 True 4034 4034 94.631 1 2596 1 chr5D.!!$R1 2595
5 TraesCS7B01G091800 chr5D 513639685 513642008 2323 False 3517 3517 93.961 1 2330 1 chr5D.!!$F2 2329
6 TraesCS7B01G091800 chr6D 45511556 45514171 2615 False 4054 4054 94.787 1 2596 1 chr6D.!!$F1 2595
7 TraesCS7B01G091800 chr1D 51878058 51880673 2615 False 4021 4021 94.548 1 2596 1 chr1D.!!$F1 2595
8 TraesCS7B01G091800 chr2A 335830613 335833007 2394 False 3843 3843 95.663 1 2392 1 chr2A.!!$F1 2391
9 TraesCS7B01G091800 chr4A 310730586 310733194 2608 False 3819 3819 93.222 1 2596 1 chr4A.!!$F2 2595
10 TraesCS7B01G091800 chrUn 442413364 442414033 669 False 1038 1038 95.082 1945 2596 1 chrUn.!!$F1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 275 0.248289 TTCGAATCCTTCCGTCCCAC 59.752 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2201 2.041701 GGGCTTATGTTGGATTGGCAT 58.958 47.619 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 113 9.582431 TCTATTTGTGTACAATACTAGCAAGAC 57.418 33.333 0.00 0.00 35.55 3.01
249 251 1.202794 GGGTTTTGGTCCGGTTACTCA 60.203 52.381 0.00 0.00 0.00 3.41
273 275 0.248289 TTCGAATCCTTCCGTCCCAC 59.752 55.000 0.00 0.00 0.00 4.61
281 283 1.960689 CCTTCCGTCCCACATTGTTTT 59.039 47.619 0.00 0.00 0.00 2.43
403 405 7.736447 AAGTCTTAAGTCCAGTCAAATTGAG 57.264 36.000 1.63 0.00 0.00 3.02
456 458 3.888583 TCAAGCACATTCAGGATATGCA 58.111 40.909 0.00 0.00 38.79 3.96
703 708 8.609617 TTATTGAGGAAGAGTCAATCCTTCTA 57.390 34.615 16.19 8.86 46.04 2.10
736 741 3.927854 AGATTGATCATCTCGAGCCATG 58.072 45.455 7.81 7.69 37.79 3.66
738 743 0.754472 TGATCATCTCGAGCCATGCA 59.246 50.000 7.81 0.12 0.00 3.96
1219 1225 1.107114 GATGGAGCTCGAGAGGACAA 58.893 55.000 18.75 0.00 0.00 3.18
1222 1228 1.691976 TGGAGCTCGAGAGGACAAAAA 59.308 47.619 18.75 0.00 0.00 1.94
1595 1608 6.824305 AAGTCAATTCGTTCCAAATGAGAT 57.176 33.333 0.00 0.00 0.00 2.75
1791 1804 1.022735 TTCTCGAGCCGTATGAGGAC 58.977 55.000 7.81 0.00 0.00 3.85
1816 1834 5.803237 AACCTCATATACGTTTCTAGGGG 57.197 43.478 0.00 0.00 0.00 4.79
1835 1854 4.075963 GGGGGCGTTGTTTATCTACATA 57.924 45.455 0.00 0.00 0.00 2.29
2039 2058 6.753107 TTAAGGAAGGCGGAATTCTTTAAG 57.247 37.500 5.23 0.00 34.92 1.85
2438 2484 0.311165 ATCGTGATTAGGGTCGCTCG 59.689 55.000 0.00 0.00 0.00 5.03
2551 2599 8.783093 TGATGTCTTACTAGTTCAATGTTTTGG 58.217 33.333 0.00 0.00 33.44 3.28
2559 2607 3.132646 AGTTCAATGTTTTGGCAGAAGCA 59.867 39.130 0.00 0.00 44.61 3.91
2596 2644 5.459762 CCATTGATTTTTGGATTTCGATCGG 59.540 40.000 16.41 0.00 34.81 4.18
2597 2645 5.888691 TTGATTTTTGGATTTCGATCGGA 57.111 34.783 16.41 2.60 0.00 4.55
2598 2646 5.484173 TGATTTTTGGATTTCGATCGGAG 57.516 39.130 16.41 0.00 0.00 4.63
2599 2647 4.335315 TGATTTTTGGATTTCGATCGGAGG 59.665 41.667 16.41 0.00 0.00 4.30
2600 2648 2.325583 TTTGGATTTCGATCGGAGGG 57.674 50.000 16.41 0.00 0.00 4.30
2601 2649 0.468226 TTGGATTTCGATCGGAGGGG 59.532 55.000 16.41 0.00 0.00 4.79
2602 2650 1.371558 GGATTTCGATCGGAGGGGG 59.628 63.158 16.41 0.00 0.00 5.40
2603 2651 1.119574 GGATTTCGATCGGAGGGGGA 61.120 60.000 16.41 0.00 0.00 4.81
2604 2652 0.033642 GATTTCGATCGGAGGGGGAC 59.966 60.000 16.41 0.00 0.00 4.46
2605 2653 0.689745 ATTTCGATCGGAGGGGGACA 60.690 55.000 16.41 0.00 0.00 4.02
2606 2654 1.610554 TTTCGATCGGAGGGGGACAC 61.611 60.000 16.41 0.00 0.00 3.67
2607 2655 3.537874 CGATCGGAGGGGGACACC 61.538 72.222 7.38 0.00 39.11 4.16
2608 2656 2.041819 GATCGGAGGGGGACACCT 60.042 66.667 0.00 0.00 45.57 4.00
2609 2657 2.365635 ATCGGAGGGGGACACCTG 60.366 66.667 0.00 0.00 42.10 4.00
2610 2658 4.715130 TCGGAGGGGGACACCTGG 62.715 72.222 0.00 0.00 42.10 4.45
2612 2660 4.677151 GGAGGGGGACACCTGGGT 62.677 72.222 0.00 0.00 42.10 4.51
2621 2669 2.912025 CACCTGGGTGGGCACAAC 60.912 66.667 11.62 0.00 42.00 3.32
2647 2695 4.778143 GTGCGCCACCCCCTACAG 62.778 72.222 4.18 0.00 0.00 2.74
2652 2700 4.096003 CCACCCCCTACAGGCGTG 62.096 72.222 4.53 4.53 35.16 5.34
2653 2701 4.778143 CACCCCCTACAGGCGTGC 62.778 72.222 6.26 0.00 30.65 5.34
2657 2705 4.473520 CCCTACAGGCGTGCCCAG 62.474 72.222 7.39 3.19 36.58 4.45
2658 2706 4.473520 CCTACAGGCGTGCCCAGG 62.474 72.222 7.39 8.24 36.58 4.45
2659 2707 3.706373 CTACAGGCGTGCCCAGGT 61.706 66.667 7.39 6.48 36.58 4.00
2660 2708 3.958147 CTACAGGCGTGCCCAGGTG 62.958 68.421 7.39 1.56 36.58 4.00
2678 2726 2.593436 GGTTGTCCCCACGTGGTG 60.593 66.667 31.80 22.56 0.00 4.17
2696 2744 4.344865 GCCCCGCAGACCCTGAAA 62.345 66.667 0.00 0.00 32.44 2.69
2697 2745 2.359975 CCCCGCAGACCCTGAAAC 60.360 66.667 0.00 0.00 32.44 2.78
2698 2746 2.750350 CCCGCAGACCCTGAAACT 59.250 61.111 0.00 0.00 32.44 2.66
2699 2747 1.672356 CCCGCAGACCCTGAAACTG 60.672 63.158 0.00 0.00 32.44 3.16
2700 2748 1.371183 CCGCAGACCCTGAAACTGA 59.629 57.895 0.00 0.00 32.44 3.41
2701 2749 0.951040 CCGCAGACCCTGAAACTGAC 60.951 60.000 0.00 0.00 32.44 3.51
2702 2750 1.284982 CGCAGACCCTGAAACTGACG 61.285 60.000 0.00 0.00 32.44 4.35
2703 2751 1.569479 GCAGACCCTGAAACTGACGC 61.569 60.000 0.00 0.00 32.44 5.19
2704 2752 0.034059 CAGACCCTGAAACTGACGCT 59.966 55.000 0.00 0.00 32.44 5.07
2705 2753 1.272490 CAGACCCTGAAACTGACGCTA 59.728 52.381 0.00 0.00 32.44 4.26
2706 2754 2.093973 CAGACCCTGAAACTGACGCTAT 60.094 50.000 0.00 0.00 32.44 2.97
2707 2755 3.130516 CAGACCCTGAAACTGACGCTATA 59.869 47.826 0.00 0.00 32.44 1.31
2708 2756 3.767673 AGACCCTGAAACTGACGCTATAA 59.232 43.478 0.00 0.00 0.00 0.98
2709 2757 4.222145 AGACCCTGAAACTGACGCTATAAA 59.778 41.667 0.00 0.00 0.00 1.40
2710 2758 4.901868 ACCCTGAAACTGACGCTATAAAA 58.098 39.130 0.00 0.00 0.00 1.52
2711 2759 5.497474 ACCCTGAAACTGACGCTATAAAAT 58.503 37.500 0.00 0.00 0.00 1.82
2712 2760 5.585047 ACCCTGAAACTGACGCTATAAAATC 59.415 40.000 0.00 0.00 0.00 2.17
2713 2761 5.007724 CCCTGAAACTGACGCTATAAAATCC 59.992 44.000 0.00 0.00 0.00 3.01
2714 2762 5.817816 CCTGAAACTGACGCTATAAAATCCT 59.182 40.000 0.00 0.00 0.00 3.24
2715 2763 6.984474 CCTGAAACTGACGCTATAAAATCCTA 59.016 38.462 0.00 0.00 0.00 2.94
2716 2764 7.657761 CCTGAAACTGACGCTATAAAATCCTAT 59.342 37.037 0.00 0.00 0.00 2.57
2717 2765 8.958119 TGAAACTGACGCTATAAAATCCTATT 57.042 30.769 0.00 0.00 0.00 1.73
2718 2766 9.391006 TGAAACTGACGCTATAAAATCCTATTT 57.609 29.630 0.00 0.00 0.00 1.40
2722 2770 8.837389 ACTGACGCTATAAAATCCTATTTTTCC 58.163 33.333 3.19 0.00 31.54 3.13
2723 2771 8.740123 TGACGCTATAAAATCCTATTTTTCCA 57.260 30.769 3.19 0.00 31.54 3.53
2724 2772 8.836413 TGACGCTATAAAATCCTATTTTTCCAG 58.164 33.333 3.19 1.25 31.54 3.86
2725 2773 8.974060 ACGCTATAAAATCCTATTTTTCCAGA 57.026 30.769 3.19 0.00 31.54 3.86
2726 2774 9.057089 ACGCTATAAAATCCTATTTTTCCAGAG 57.943 33.333 3.19 3.86 31.54 3.35
2727 2775 9.273016 CGCTATAAAATCCTATTTTTCCAGAGA 57.727 33.333 3.19 0.00 31.54 3.10
2740 2788 6.463053 TTTTCCAGAGAAAATAGGGGAGAA 57.537 37.500 0.00 0.00 44.99 2.87
2741 2789 6.463053 TTTCCAGAGAAAATAGGGGAGAAA 57.537 37.500 0.00 0.00 39.05 2.52
2742 2790 5.700402 TCCAGAGAAAATAGGGGAGAAAG 57.300 43.478 0.00 0.00 0.00 2.62
2743 2791 5.350547 TCCAGAGAAAATAGGGGAGAAAGA 58.649 41.667 0.00 0.00 0.00 2.52
2744 2792 5.790618 TCCAGAGAAAATAGGGGAGAAAGAA 59.209 40.000 0.00 0.00 0.00 2.52
2745 2793 6.448387 TCCAGAGAAAATAGGGGAGAAAGAAT 59.552 38.462 0.00 0.00 0.00 2.40
2746 2794 7.036571 TCCAGAGAAAATAGGGGAGAAAGAATT 60.037 37.037 0.00 0.00 0.00 2.17
2747 2795 8.275040 CCAGAGAAAATAGGGGAGAAAGAATTA 58.725 37.037 0.00 0.00 0.00 1.40
2748 2796 9.859152 CAGAGAAAATAGGGGAGAAAGAATTAT 57.141 33.333 0.00 0.00 0.00 1.28
2750 2798 9.853177 GAGAAAATAGGGGAGAAAGAATTATCA 57.147 33.333 0.00 0.00 0.00 2.15
2751 2799 9.634021 AGAAAATAGGGGAGAAAGAATTATCAC 57.366 33.333 0.00 0.00 29.15 3.06
2752 2800 9.408648 GAAAATAGGGGAGAAAGAATTATCACA 57.591 33.333 0.00 0.00 31.65 3.58
2753 2801 9.942526 AAAATAGGGGAGAAAGAATTATCACAT 57.057 29.630 0.00 0.00 31.65 3.21
2754 2802 9.942526 AAATAGGGGAGAAAGAATTATCACATT 57.057 29.630 0.00 0.00 31.65 2.71
2755 2803 9.942526 AATAGGGGAGAAAGAATTATCACATTT 57.057 29.630 0.00 0.00 31.65 2.32
2756 2804 7.888250 AGGGGAGAAAGAATTATCACATTTC 57.112 36.000 0.00 0.00 31.65 2.17
2757 2805 7.413446 AGGGGAGAAAGAATTATCACATTTCA 58.587 34.615 0.00 0.00 31.65 2.69
2758 2806 8.063770 AGGGGAGAAAGAATTATCACATTTCAT 58.936 33.333 0.00 0.00 31.65 2.57
2759 2807 8.139989 GGGGAGAAAGAATTATCACATTTCATG 58.860 37.037 0.00 0.00 31.65 3.07
2760 2808 8.906867 GGGAGAAAGAATTATCACATTTCATGA 58.093 33.333 0.00 0.00 30.42 3.07
2761 2809 9.947669 GGAGAAAGAATTATCACATTTCATGAG 57.052 33.333 0.00 0.00 33.36 2.90
2766 2814 9.676861 AAGAATTATCACATTTCATGAGACAGA 57.323 29.630 0.00 0.00 32.81 3.41
2767 2815 9.327628 AGAATTATCACATTTCATGAGACAGAG 57.672 33.333 0.00 0.00 32.81 3.35
2768 2816 6.915544 TTATCACATTTCATGAGACAGAGC 57.084 37.500 0.00 0.00 32.81 4.09
2769 2817 3.603532 TCACATTTCATGAGACAGAGCC 58.396 45.455 0.00 0.00 0.00 4.70
2770 2818 3.008266 TCACATTTCATGAGACAGAGCCA 59.992 43.478 0.00 0.00 0.00 4.75
2771 2819 3.126514 CACATTTCATGAGACAGAGCCAC 59.873 47.826 0.00 0.00 0.00 5.01
2772 2820 2.479566 TTTCATGAGACAGAGCCACC 57.520 50.000 0.00 0.00 0.00 4.61
2773 2821 1.351076 TTCATGAGACAGAGCCACCA 58.649 50.000 0.00 0.00 0.00 4.17
2774 2822 1.576577 TCATGAGACAGAGCCACCAT 58.423 50.000 0.00 0.00 0.00 3.55
2775 2823 1.911357 TCATGAGACAGAGCCACCATT 59.089 47.619 0.00 0.00 0.00 3.16
2776 2824 2.014857 CATGAGACAGAGCCACCATTG 58.985 52.381 0.00 0.00 0.00 2.82
2777 2825 1.059098 TGAGACAGAGCCACCATTGT 58.941 50.000 0.00 0.00 0.00 2.71
2778 2826 1.002430 TGAGACAGAGCCACCATTGTC 59.998 52.381 0.00 0.00 40.08 3.18
2779 2827 1.356124 AGACAGAGCCACCATTGTCT 58.644 50.000 0.45 0.45 43.89 3.41
2780 2828 1.277557 AGACAGAGCCACCATTGTCTC 59.722 52.381 0.45 0.00 45.11 3.36
2781 2829 0.326264 ACAGAGCCACCATTGTCTCC 59.674 55.000 0.00 0.00 0.00 3.71
2782 2830 0.617413 CAGAGCCACCATTGTCTCCT 59.383 55.000 0.00 0.00 0.00 3.69
2783 2831 0.617413 AGAGCCACCATTGTCTCCTG 59.383 55.000 0.00 0.00 0.00 3.86
2784 2832 0.326264 GAGCCACCATTGTCTCCTGT 59.674 55.000 0.00 0.00 0.00 4.00
2785 2833 0.773644 AGCCACCATTGTCTCCTGTT 59.226 50.000 0.00 0.00 0.00 3.16
2786 2834 1.168714 GCCACCATTGTCTCCTGTTC 58.831 55.000 0.00 0.00 0.00 3.18
2787 2835 1.271597 GCCACCATTGTCTCCTGTTCT 60.272 52.381 0.00 0.00 0.00 3.01
2788 2836 2.815589 GCCACCATTGTCTCCTGTTCTT 60.816 50.000 0.00 0.00 0.00 2.52
2789 2837 3.077359 CCACCATTGTCTCCTGTTCTTC 58.923 50.000 0.00 0.00 0.00 2.87
2790 2838 3.496692 CCACCATTGTCTCCTGTTCTTCA 60.497 47.826 0.00 0.00 0.00 3.02
2791 2839 4.330250 CACCATTGTCTCCTGTTCTTCAT 58.670 43.478 0.00 0.00 0.00 2.57
2792 2840 4.155462 CACCATTGTCTCCTGTTCTTCATG 59.845 45.833 0.00 0.00 0.00 3.07
2793 2841 3.693085 CCATTGTCTCCTGTTCTTCATGG 59.307 47.826 0.00 0.00 0.00 3.66
2794 2842 3.423539 TTGTCTCCTGTTCTTCATGGG 57.576 47.619 0.00 0.00 0.00 4.00
2795 2843 2.619931 TGTCTCCTGTTCTTCATGGGA 58.380 47.619 0.00 0.00 0.00 4.37
2796 2844 2.978978 TGTCTCCTGTTCTTCATGGGAA 59.021 45.455 0.00 0.00 0.00 3.97
2806 2854 2.573369 CTTCATGGGAAGCCAGATCTG 58.427 52.381 16.24 16.24 43.67 2.90
2819 2867 2.831333 CAGATCTGGAATCTGTTCGGG 58.169 52.381 15.38 0.00 40.34 5.14
2820 2868 1.765314 AGATCTGGAATCTGTTCGGGG 59.235 52.381 0.00 0.00 35.10 5.73
2821 2869 0.181350 ATCTGGAATCTGTTCGGGGC 59.819 55.000 0.00 0.00 35.10 5.80
2822 2870 0.909610 TCTGGAATCTGTTCGGGGCT 60.910 55.000 0.00 0.00 35.10 5.19
2823 2871 0.462759 CTGGAATCTGTTCGGGGCTC 60.463 60.000 0.00 0.00 35.10 4.70
2824 2872 1.153147 GGAATCTGTTCGGGGCTCC 60.153 63.158 0.00 0.00 35.10 4.70
2825 2873 1.602237 GAATCTGTTCGGGGCTCCA 59.398 57.895 1.96 0.00 0.00 3.86
2826 2874 0.462759 GAATCTGTTCGGGGCTCCAG 60.463 60.000 1.96 0.00 0.00 3.86
2827 2875 0.909610 AATCTGTTCGGGGCTCCAGA 60.910 55.000 1.96 0.00 38.24 3.86
2828 2876 1.333636 ATCTGTTCGGGGCTCCAGAG 61.334 60.000 1.96 0.00 37.37 3.35
2829 2877 1.984570 CTGTTCGGGGCTCCAGAGA 60.985 63.158 1.96 0.00 0.00 3.10
2830 2878 1.954362 CTGTTCGGGGCTCCAGAGAG 61.954 65.000 1.96 0.00 43.57 3.20
2831 2879 2.364317 TTCGGGGCTCCAGAGAGG 60.364 66.667 1.96 0.00 40.79 3.69
2832 2880 3.984186 TTCGGGGCTCCAGAGAGGG 62.984 68.421 1.96 0.00 40.79 4.30
2835 2883 4.095400 GGGCTCCAGAGAGGGGGA 62.095 72.222 0.00 0.00 38.82 4.81
2836 2884 2.288643 GGCTCCAGAGAGGGGGAT 59.711 66.667 0.00 0.00 38.82 3.85
2837 2885 1.549297 GGCTCCAGAGAGGGGGATA 59.451 63.158 0.00 0.00 38.82 2.59
2838 2886 0.118144 GGCTCCAGAGAGGGGGATAT 59.882 60.000 0.00 0.00 38.82 1.63
2839 2887 1.485978 GGCTCCAGAGAGGGGGATATT 60.486 57.143 0.00 0.00 38.82 1.28
2840 2888 1.905894 GCTCCAGAGAGGGGGATATTC 59.094 57.143 0.00 0.00 38.82 1.75
2841 2889 2.175202 CTCCAGAGAGGGGGATATTCG 58.825 57.143 0.00 0.00 36.39 3.34
2842 2890 1.787058 TCCAGAGAGGGGGATATTCGA 59.213 52.381 0.00 0.00 38.24 3.71
2843 2891 2.383683 TCCAGAGAGGGGGATATTCGAT 59.616 50.000 0.00 0.00 38.24 3.59
2844 2892 2.763448 CCAGAGAGGGGGATATTCGATC 59.237 54.545 0.00 0.00 0.00 3.69
2845 2893 3.565449 CCAGAGAGGGGGATATTCGATCT 60.565 52.174 0.00 0.00 0.00 2.75
2846 2894 4.093011 CAGAGAGGGGGATATTCGATCTT 58.907 47.826 0.00 0.00 0.00 2.40
2847 2895 4.530161 CAGAGAGGGGGATATTCGATCTTT 59.470 45.833 0.00 0.00 0.00 2.52
2848 2896 4.530161 AGAGAGGGGGATATTCGATCTTTG 59.470 45.833 0.00 0.00 0.00 2.77
2849 2897 4.235372 AGAGGGGGATATTCGATCTTTGT 58.765 43.478 0.00 0.00 0.00 2.83
2850 2898 4.284746 AGAGGGGGATATTCGATCTTTGTC 59.715 45.833 0.00 0.00 0.00 3.18
2851 2899 3.973973 AGGGGGATATTCGATCTTTGTCA 59.026 43.478 0.00 0.00 0.00 3.58
2852 2900 4.599241 AGGGGGATATTCGATCTTTGTCAT 59.401 41.667 0.00 0.00 0.00 3.06
2853 2901 4.938226 GGGGGATATTCGATCTTTGTCATC 59.062 45.833 0.00 0.00 0.00 2.92
2854 2902 5.513094 GGGGGATATTCGATCTTTGTCATCA 60.513 44.000 0.00 0.00 0.00 3.07
2855 2903 6.176183 GGGGATATTCGATCTTTGTCATCAT 58.824 40.000 0.00 0.00 0.00 2.45
2856 2904 6.314896 GGGGATATTCGATCTTTGTCATCATC 59.685 42.308 0.00 0.00 0.00 2.92
2857 2905 6.875726 GGGATATTCGATCTTTGTCATCATCA 59.124 38.462 0.00 0.00 0.00 3.07
2858 2906 7.388776 GGGATATTCGATCTTTGTCATCATCAA 59.611 37.037 0.00 0.00 0.00 2.57
2859 2907 8.226448 GGATATTCGATCTTTGTCATCATCAAC 58.774 37.037 0.00 0.00 0.00 3.18
2860 2908 5.801350 TTCGATCTTTGTCATCATCAACC 57.199 39.130 0.00 0.00 0.00 3.77
2861 2909 4.191544 TCGATCTTTGTCATCATCAACCC 58.808 43.478 0.00 0.00 0.00 4.11
2862 2910 4.080919 TCGATCTTTGTCATCATCAACCCT 60.081 41.667 0.00 0.00 0.00 4.34
2863 2911 4.637534 CGATCTTTGTCATCATCAACCCTT 59.362 41.667 0.00 0.00 0.00 3.95
2864 2912 5.220739 CGATCTTTGTCATCATCAACCCTTC 60.221 44.000 0.00 0.00 0.00 3.46
2865 2913 5.246981 TCTTTGTCATCATCAACCCTTCT 57.753 39.130 0.00 0.00 0.00 2.85
2866 2914 5.248640 TCTTTGTCATCATCAACCCTTCTC 58.751 41.667 0.00 0.00 0.00 2.87
2867 2915 3.634397 TGTCATCATCAACCCTTCTCC 57.366 47.619 0.00 0.00 0.00 3.71
2868 2916 2.912295 TGTCATCATCAACCCTTCTCCA 59.088 45.455 0.00 0.00 0.00 3.86
2869 2917 3.524789 TGTCATCATCAACCCTTCTCCAT 59.475 43.478 0.00 0.00 0.00 3.41
2870 2918 4.133078 GTCATCATCAACCCTTCTCCATC 58.867 47.826 0.00 0.00 0.00 3.51
2871 2919 2.988010 TCATCAACCCTTCTCCATCG 57.012 50.000 0.00 0.00 0.00 3.84
2872 2920 1.134401 TCATCAACCCTTCTCCATCGC 60.134 52.381 0.00 0.00 0.00 4.58
2873 2921 0.181350 ATCAACCCTTCTCCATCGCC 59.819 55.000 0.00 0.00 0.00 5.54
2874 2922 1.198094 TCAACCCTTCTCCATCGCCA 61.198 55.000 0.00 0.00 0.00 5.69
2875 2923 0.322456 CAACCCTTCTCCATCGCCAA 60.322 55.000 0.00 0.00 0.00 4.52
2876 2924 0.625849 AACCCTTCTCCATCGCCAAT 59.374 50.000 0.00 0.00 0.00 3.16
2877 2925 0.625849 ACCCTTCTCCATCGCCAATT 59.374 50.000 0.00 0.00 0.00 2.32
2878 2926 1.312815 CCCTTCTCCATCGCCAATTC 58.687 55.000 0.00 0.00 0.00 2.17
2879 2927 1.312815 CCTTCTCCATCGCCAATTCC 58.687 55.000 0.00 0.00 0.00 3.01
2880 2928 1.408683 CCTTCTCCATCGCCAATTCCA 60.409 52.381 0.00 0.00 0.00 3.53
2881 2929 2.579873 CTTCTCCATCGCCAATTCCAT 58.420 47.619 0.00 0.00 0.00 3.41
2882 2930 1.971481 TCTCCATCGCCAATTCCATG 58.029 50.000 0.00 0.00 0.00 3.66
2883 2931 1.490069 TCTCCATCGCCAATTCCATGA 59.510 47.619 0.00 0.00 0.00 3.07
2884 2932 2.107031 TCTCCATCGCCAATTCCATGAT 59.893 45.455 0.00 0.00 0.00 2.45
2885 2933 2.228103 CTCCATCGCCAATTCCATGATG 59.772 50.000 0.00 0.00 36.93 3.07
2886 2934 1.336517 CCATCGCCAATTCCATGATGC 60.337 52.381 0.00 0.00 36.09 3.91
2887 2935 1.611977 CATCGCCAATTCCATGATGCT 59.388 47.619 0.00 0.00 31.15 3.79
2888 2936 1.311859 TCGCCAATTCCATGATGCTC 58.688 50.000 0.00 0.00 0.00 4.26
2889 2937 0.313043 CGCCAATTCCATGATGCTCC 59.687 55.000 0.00 0.00 0.00 4.70
2890 2938 0.677842 GCCAATTCCATGATGCTCCC 59.322 55.000 0.00 0.00 0.00 4.30
2891 2939 1.335145 CCAATTCCATGATGCTCCCC 58.665 55.000 0.00 0.00 0.00 4.81
2892 2940 1.411930 CCAATTCCATGATGCTCCCCA 60.412 52.381 0.00 0.00 0.00 4.96
2893 2941 1.684983 CAATTCCATGATGCTCCCCAC 59.315 52.381 0.00 0.00 0.00 4.61
2894 2942 0.186873 ATTCCATGATGCTCCCCACC 59.813 55.000 0.00 0.00 0.00 4.61
2895 2943 0.920763 TTCCATGATGCTCCCCACCT 60.921 55.000 0.00 0.00 0.00 4.00
2896 2944 1.152819 CCATGATGCTCCCCACCTG 60.153 63.158 0.00 0.00 0.00 4.00
2897 2945 1.152819 CATGATGCTCCCCACCTGG 60.153 63.158 0.00 0.00 0.00 4.45
2898 2946 1.308128 ATGATGCTCCCCACCTGGA 60.308 57.895 0.00 0.00 37.39 3.86
2913 2961 4.828072 ACCTGGAGTGAGTAATTCCTTC 57.172 45.455 0.00 0.00 32.12 3.46
2914 2962 3.195825 ACCTGGAGTGAGTAATTCCTTCG 59.804 47.826 0.00 0.00 32.12 3.79
2915 2963 3.195825 CCTGGAGTGAGTAATTCCTTCGT 59.804 47.826 0.00 0.00 32.12 3.85
2916 2964 4.401519 CCTGGAGTGAGTAATTCCTTCGTA 59.598 45.833 0.00 0.00 32.12 3.43
2917 2965 5.450688 CCTGGAGTGAGTAATTCCTTCGTAG 60.451 48.000 0.00 0.00 32.12 3.51
2918 2966 4.401519 TGGAGTGAGTAATTCCTTCGTAGG 59.598 45.833 0.79 0.79 43.46 3.18
2919 2967 4.361420 GAGTGAGTAATTCCTTCGTAGGC 58.639 47.826 2.65 0.00 41.69 3.93
2920 2968 4.024670 AGTGAGTAATTCCTTCGTAGGCT 58.975 43.478 2.65 0.00 41.69 4.58
2921 2969 4.098196 AGTGAGTAATTCCTTCGTAGGCTC 59.902 45.833 2.65 4.65 41.69 4.70
2922 2970 3.066342 TGAGTAATTCCTTCGTAGGCTCG 59.934 47.826 2.65 0.00 41.69 5.03
2923 2971 2.125685 GTAATTCCTTCGTAGGCTCGC 58.874 52.381 2.65 0.00 41.69 5.03
2924 2972 0.824759 AATTCCTTCGTAGGCTCGCT 59.175 50.000 2.65 0.00 41.69 4.93
2925 2973 0.103208 ATTCCTTCGTAGGCTCGCTG 59.897 55.000 2.65 0.00 41.69 5.18
2926 2974 1.945354 TTCCTTCGTAGGCTCGCTGG 61.945 60.000 2.65 1.11 41.69 4.85
2927 2975 2.711922 CCTTCGTAGGCTCGCTGGT 61.712 63.158 0.00 0.00 33.99 4.00
2928 2976 1.226717 CTTCGTAGGCTCGCTGGTC 60.227 63.158 0.00 0.00 0.00 4.02
2929 2977 2.921538 CTTCGTAGGCTCGCTGGTCG 62.922 65.000 0.00 0.00 40.15 4.79
2930 2978 4.554363 CGTAGGCTCGCTGGTCGG 62.554 72.222 0.00 0.00 39.05 4.79
2931 2979 3.450115 GTAGGCTCGCTGGTCGGT 61.450 66.667 0.00 0.00 39.05 4.69
2932 2980 3.449227 TAGGCTCGCTGGTCGGTG 61.449 66.667 0.00 0.00 39.05 4.94
2933 2981 3.931190 TAGGCTCGCTGGTCGGTGA 62.931 63.158 0.00 0.00 39.05 4.02
2934 2982 4.803426 GGCTCGCTGGTCGGTGAG 62.803 72.222 14.17 14.17 44.06 3.51
2935 2983 4.803426 GCTCGCTGGTCGGTGAGG 62.803 72.222 18.49 4.64 42.22 3.86
2936 2984 3.062466 CTCGCTGGTCGGTGAGGA 61.062 66.667 11.42 0.00 39.39 3.71
2937 2985 3.057547 CTCGCTGGTCGGTGAGGAG 62.058 68.421 11.42 0.00 39.39 3.69
2938 2986 3.374402 CGCTGGTCGGTGAGGAGT 61.374 66.667 0.00 0.00 33.78 3.85
2939 2987 2.932234 CGCTGGTCGGTGAGGAGTT 61.932 63.158 0.00 0.00 33.78 3.01
2940 2988 1.374758 GCTGGTCGGTGAGGAGTTG 60.375 63.158 0.00 0.00 0.00 3.16
2941 2989 1.293498 CTGGTCGGTGAGGAGTTGG 59.707 63.158 0.00 0.00 0.00 3.77
2942 2990 1.152419 TGGTCGGTGAGGAGTTGGA 60.152 57.895 0.00 0.00 0.00 3.53
2943 2991 0.544357 TGGTCGGTGAGGAGTTGGAT 60.544 55.000 0.00 0.00 0.00 3.41
2944 2992 0.108138 GGTCGGTGAGGAGTTGGATG 60.108 60.000 0.00 0.00 0.00 3.51
2945 2993 0.108138 GTCGGTGAGGAGTTGGATGG 60.108 60.000 0.00 0.00 0.00 3.51
2946 2994 1.221840 CGGTGAGGAGTTGGATGGG 59.778 63.158 0.00 0.00 0.00 4.00
2947 2995 1.264749 CGGTGAGGAGTTGGATGGGA 61.265 60.000 0.00 0.00 0.00 4.37
2948 2996 1.216990 GGTGAGGAGTTGGATGGGAT 58.783 55.000 0.00 0.00 0.00 3.85
2949 2997 1.566231 GGTGAGGAGTTGGATGGGATT 59.434 52.381 0.00 0.00 0.00 3.01
2950 2998 2.648059 GTGAGGAGTTGGATGGGATTG 58.352 52.381 0.00 0.00 0.00 2.67
2951 2999 2.239654 GTGAGGAGTTGGATGGGATTGA 59.760 50.000 0.00 0.00 0.00 2.57
2952 3000 2.918934 TGAGGAGTTGGATGGGATTGAA 59.081 45.455 0.00 0.00 0.00 2.69
2953 3001 3.282885 GAGGAGTTGGATGGGATTGAAC 58.717 50.000 0.00 0.00 0.00 3.18
2954 3002 2.649312 AGGAGTTGGATGGGATTGAACA 59.351 45.455 0.00 0.00 0.00 3.18
2955 3003 3.270433 AGGAGTTGGATGGGATTGAACAT 59.730 43.478 0.00 0.00 0.00 2.71
2956 3004 3.382546 GGAGTTGGATGGGATTGAACATG 59.617 47.826 0.00 0.00 0.00 3.21
2957 3005 4.019174 GAGTTGGATGGGATTGAACATGT 58.981 43.478 0.00 0.00 0.00 3.21
2958 3006 4.019174 AGTTGGATGGGATTGAACATGTC 58.981 43.478 0.00 0.00 0.00 3.06
2959 3007 3.735720 TGGATGGGATTGAACATGTCA 57.264 42.857 0.00 0.00 0.00 3.58
2960 3008 4.254039 TGGATGGGATTGAACATGTCAT 57.746 40.909 0.00 0.00 35.70 3.06
2961 3009 4.209538 TGGATGGGATTGAACATGTCATC 58.790 43.478 0.00 5.86 35.70 2.92
2962 3010 4.209538 GGATGGGATTGAACATGTCATCA 58.790 43.478 17.97 9.31 35.70 3.07
2963 3011 4.646040 GGATGGGATTGAACATGTCATCAA 59.354 41.667 13.84 13.84 39.66 2.57
2964 3012 5.221185 GGATGGGATTGAACATGTCATCAAG 60.221 44.000 16.01 0.00 38.80 3.02
2965 3013 4.665451 TGGGATTGAACATGTCATCAAGT 58.335 39.130 16.01 6.90 38.80 3.16
2966 3014 5.078949 TGGGATTGAACATGTCATCAAGTT 58.921 37.500 16.01 3.36 38.80 2.66
2967 3015 6.244654 TGGGATTGAACATGTCATCAAGTTA 58.755 36.000 16.01 3.39 38.80 2.24
2968 3016 6.375174 TGGGATTGAACATGTCATCAAGTTAG 59.625 38.462 16.01 0.00 38.80 2.34
2969 3017 6.375455 GGGATTGAACATGTCATCAAGTTAGT 59.625 38.462 16.01 2.14 38.80 2.24
2970 3018 7.094205 GGGATTGAACATGTCATCAAGTTAGTT 60.094 37.037 16.01 1.54 38.80 2.24
2971 3019 8.299570 GGATTGAACATGTCATCAAGTTAGTTT 58.700 33.333 16.01 0.94 38.80 2.66
2972 3020 9.683069 GATTGAACATGTCATCAAGTTAGTTTT 57.317 29.630 16.01 0.33 38.80 2.43
2973 3021 8.854979 TTGAACATGTCATCAAGTTAGTTTTG 57.145 30.769 8.57 0.00 35.95 2.44
2974 3022 7.995289 TGAACATGTCATCAAGTTAGTTTTGT 58.005 30.769 0.00 0.00 35.95 2.83
2975 3023 8.465999 TGAACATGTCATCAAGTTAGTTTTGTT 58.534 29.630 0.00 0.00 35.95 2.83
2976 3024 9.944663 GAACATGTCATCAAGTTAGTTTTGTTA 57.055 29.630 0.00 0.00 35.95 2.41
2977 3025 9.950680 AACATGTCATCAAGTTAGTTTTGTTAG 57.049 29.630 0.00 0.00 34.41 2.34
2978 3026 8.567948 ACATGTCATCAAGTTAGTTTTGTTAGG 58.432 33.333 0.00 0.00 0.00 2.69
2979 3027 7.504924 TGTCATCAAGTTAGTTTTGTTAGGG 57.495 36.000 0.00 0.00 0.00 3.53
2980 3028 6.016610 TGTCATCAAGTTAGTTTTGTTAGGGC 60.017 38.462 0.00 0.00 0.00 5.19
2981 3029 6.206829 GTCATCAAGTTAGTTTTGTTAGGGCT 59.793 38.462 0.00 0.00 0.00 5.19
2982 3030 6.775629 TCATCAAGTTAGTTTTGTTAGGGCTT 59.224 34.615 0.00 0.00 0.00 4.35
2983 3031 6.385649 TCAAGTTAGTTTTGTTAGGGCTTG 57.614 37.500 0.00 0.00 34.05 4.01
2984 3032 6.123651 TCAAGTTAGTTTTGTTAGGGCTTGA 58.876 36.000 0.00 0.00 37.88 3.02
2985 3033 6.775629 TCAAGTTAGTTTTGTTAGGGCTTGAT 59.224 34.615 0.00 0.00 36.10 2.57
2986 3034 6.819397 AGTTAGTTTTGTTAGGGCTTGATC 57.181 37.500 0.00 0.00 0.00 2.92
2987 3035 5.710567 AGTTAGTTTTGTTAGGGCTTGATCC 59.289 40.000 0.00 0.00 0.00 3.36
2988 3036 3.431415 AGTTTTGTTAGGGCTTGATCCC 58.569 45.455 0.00 0.00 46.93 3.85
2997 3045 2.621070 GGGCTTGATCCCTAGTATCCA 58.379 52.381 0.00 0.00 43.13 3.41
2998 3046 3.185455 GGGCTTGATCCCTAGTATCCAT 58.815 50.000 0.00 0.00 43.13 3.41
2999 3047 3.589288 GGGCTTGATCCCTAGTATCCATT 59.411 47.826 0.00 0.00 43.13 3.16
3000 3048 4.783227 GGGCTTGATCCCTAGTATCCATTA 59.217 45.833 0.00 0.00 43.13 1.90
3001 3049 5.430089 GGGCTTGATCCCTAGTATCCATTAT 59.570 44.000 0.00 0.00 43.13 1.28
3002 3050 6.352516 GGCTTGATCCCTAGTATCCATTATG 58.647 44.000 0.00 0.00 0.00 1.90
3003 3051 6.069963 GGCTTGATCCCTAGTATCCATTATGT 60.070 42.308 0.00 0.00 0.00 2.29
3004 3052 7.398024 GCTTGATCCCTAGTATCCATTATGTT 58.602 38.462 0.00 0.00 0.00 2.71
3005 3053 7.550906 GCTTGATCCCTAGTATCCATTATGTTC 59.449 40.741 0.00 0.00 0.00 3.18
3006 3054 8.742125 TTGATCCCTAGTATCCATTATGTTCT 57.258 34.615 0.00 0.00 0.00 3.01
3007 3055 8.138928 TGATCCCTAGTATCCATTATGTTCTG 57.861 38.462 0.00 0.00 0.00 3.02
3008 3056 7.955750 TGATCCCTAGTATCCATTATGTTCTGA 59.044 37.037 0.00 0.00 0.00 3.27
3009 3057 7.782897 TCCCTAGTATCCATTATGTTCTGAG 57.217 40.000 0.00 0.00 0.00 3.35
3010 3058 7.535738 TCCCTAGTATCCATTATGTTCTGAGA 58.464 38.462 0.00 0.00 0.00 3.27
3011 3059 8.180165 TCCCTAGTATCCATTATGTTCTGAGAT 58.820 37.037 0.00 0.00 0.00 2.75
3012 3060 8.820831 CCCTAGTATCCATTATGTTCTGAGATT 58.179 37.037 0.00 0.00 0.00 2.40
3013 3061 9.650539 CCTAGTATCCATTATGTTCTGAGATTG 57.349 37.037 0.00 0.00 0.00 2.67
3016 3064 9.722184 AGTATCCATTATGTTCTGAGATTGATG 57.278 33.333 0.00 0.00 0.00 3.07
3017 3065 9.499479 GTATCCATTATGTTCTGAGATTGATGT 57.501 33.333 0.00 0.00 0.00 3.06
3018 3066 8.991783 ATCCATTATGTTCTGAGATTGATGTT 57.008 30.769 0.00 0.00 0.00 2.71
3019 3067 8.217131 TCCATTATGTTCTGAGATTGATGTTG 57.783 34.615 0.00 0.00 0.00 3.33
3020 3068 6.916387 CCATTATGTTCTGAGATTGATGTTGC 59.084 38.462 0.00 0.00 0.00 4.17
3021 3069 7.201794 CCATTATGTTCTGAGATTGATGTTGCT 60.202 37.037 0.00 0.00 0.00 3.91
3022 3070 8.833493 CATTATGTTCTGAGATTGATGTTGCTA 58.167 33.333 0.00 0.00 0.00 3.49
3023 3071 8.969260 TTATGTTCTGAGATTGATGTTGCTAT 57.031 30.769 0.00 0.00 0.00 2.97
3024 3072 6.673154 TGTTCTGAGATTGATGTTGCTATG 57.327 37.500 0.00 0.00 0.00 2.23
3025 3073 6.408869 TGTTCTGAGATTGATGTTGCTATGA 58.591 36.000 0.00 0.00 0.00 2.15
3026 3074 6.314648 TGTTCTGAGATTGATGTTGCTATGAC 59.685 38.462 0.00 0.00 0.00 3.06
3027 3075 6.231258 TCTGAGATTGATGTTGCTATGACT 57.769 37.500 0.00 0.00 0.00 3.41
3028 3076 6.647229 TCTGAGATTGATGTTGCTATGACTT 58.353 36.000 0.00 0.00 0.00 3.01
3029 3077 7.108194 TCTGAGATTGATGTTGCTATGACTTT 58.892 34.615 0.00 0.00 0.00 2.66
3030 3078 7.065443 TCTGAGATTGATGTTGCTATGACTTTG 59.935 37.037 0.00 0.00 0.00 2.77
3031 3079 5.888105 AGATTGATGTTGCTATGACTTTGC 58.112 37.500 0.00 0.00 0.00 3.68
3032 3080 4.439305 TTGATGTTGCTATGACTTTGCC 57.561 40.909 0.00 0.00 0.00 4.52
3033 3081 3.419943 TGATGTTGCTATGACTTTGCCA 58.580 40.909 0.00 0.00 0.00 4.92
3034 3082 4.018490 TGATGTTGCTATGACTTTGCCAT 58.982 39.130 0.00 0.00 0.00 4.40
3035 3083 3.853831 TGTTGCTATGACTTTGCCATG 57.146 42.857 0.00 0.00 0.00 3.66
3036 3084 2.094597 TGTTGCTATGACTTTGCCATGC 60.095 45.455 0.00 0.00 0.00 4.06
3037 3085 2.133281 TGCTATGACTTTGCCATGCT 57.867 45.000 0.00 0.00 0.00 3.79
3038 3086 2.449464 TGCTATGACTTTGCCATGCTT 58.551 42.857 0.00 0.00 0.00 3.91
3039 3087 3.619419 TGCTATGACTTTGCCATGCTTA 58.381 40.909 0.00 0.00 0.00 3.09
3040 3088 4.015764 TGCTATGACTTTGCCATGCTTAA 58.984 39.130 0.00 0.00 0.00 1.85
3041 3089 4.646040 TGCTATGACTTTGCCATGCTTAAT 59.354 37.500 0.00 0.00 0.00 1.40
3042 3090 4.980434 GCTATGACTTTGCCATGCTTAATG 59.020 41.667 0.00 0.00 35.89 1.90
3043 3091 3.235157 TGACTTTGCCATGCTTAATGC 57.765 42.857 0.00 0.00 43.25 3.56
3044 3092 2.827322 TGACTTTGCCATGCTTAATGCT 59.173 40.909 0.00 0.00 43.37 3.79
3045 3093 3.258872 TGACTTTGCCATGCTTAATGCTT 59.741 39.130 0.00 0.00 43.37 3.91
3046 3094 3.592059 ACTTTGCCATGCTTAATGCTTG 58.408 40.909 0.00 0.00 43.77 4.01
3047 3095 3.007182 ACTTTGCCATGCTTAATGCTTGT 59.993 39.130 9.97 0.00 42.96 3.16
3048 3096 2.945447 TGCCATGCTTAATGCTTGTC 57.055 45.000 9.97 1.81 42.96 3.18
3049 3097 2.169330 TGCCATGCTTAATGCTTGTCA 58.831 42.857 9.97 3.69 42.96 3.58
3050 3098 2.094597 TGCCATGCTTAATGCTTGTCAC 60.095 45.455 9.97 3.52 42.96 3.67
3051 3099 2.165030 GCCATGCTTAATGCTTGTCACT 59.835 45.455 9.97 0.00 42.96 3.41
3052 3100 3.367703 GCCATGCTTAATGCTTGTCACTT 60.368 43.478 9.97 0.00 42.96 3.16
3053 3101 4.813027 CCATGCTTAATGCTTGTCACTTT 58.187 39.130 9.97 0.00 42.96 2.66
3054 3102 4.624024 CCATGCTTAATGCTTGTCACTTTG 59.376 41.667 9.97 0.00 42.96 2.77
3055 3103 4.241590 TGCTTAATGCTTGTCACTTTGG 57.758 40.909 0.00 0.00 43.37 3.28
3056 3104 3.005684 TGCTTAATGCTTGTCACTTTGGG 59.994 43.478 0.00 0.00 43.37 4.12
3057 3105 3.255642 GCTTAATGCTTGTCACTTTGGGA 59.744 43.478 0.00 0.00 38.95 4.37
3058 3106 4.798574 CTTAATGCTTGTCACTTTGGGAC 58.201 43.478 0.00 0.00 35.83 4.46
3059 3107 1.620822 ATGCTTGTCACTTTGGGACC 58.379 50.000 0.00 0.00 34.36 4.46
3060 3108 0.817634 TGCTTGTCACTTTGGGACCG 60.818 55.000 0.00 0.00 34.36 4.79
3061 3109 1.515521 GCTTGTCACTTTGGGACCGG 61.516 60.000 0.00 0.00 34.36 5.28
3062 3110 0.889186 CTTGTCACTTTGGGACCGGG 60.889 60.000 6.32 0.00 34.36 5.73
3063 3111 1.637724 TTGTCACTTTGGGACCGGGT 61.638 55.000 6.32 0.00 34.36 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 9.713713 TTGTCTTGCTAGTATTGTACACAAATA 57.286 29.630 0.00 0.00 39.55 1.40
88 90 8.615878 TTGTCTTGCTAGTATTGTACACAAAT 57.384 30.769 0.00 0.00 39.55 2.32
89 91 8.615878 ATTGTCTTGCTAGTATTGTACACAAA 57.384 30.769 0.00 0.00 39.55 2.83
90 92 9.884636 ATATTGTCTTGCTAGTATTGTACACAA 57.115 29.630 0.00 0.00 40.51 3.33
97 99 6.876257 GGAGGGATATTGTCTTGCTAGTATTG 59.124 42.308 0.00 0.00 0.00 1.90
169 171 9.469239 GTTTTATGCGACACTAATAAACACTAC 57.531 33.333 0.00 0.00 0.00 2.73
241 243 3.447944 AGGATTCGAACCTCTGAGTAACC 59.552 47.826 0.00 0.00 31.43 2.85
489 491 5.934935 TCAACTCGAATACCAAAAGGAAC 57.065 39.130 0.00 0.00 0.00 3.62
703 708 7.438757 CGAGATGATCAATCTTGAAGTGAGAAT 59.561 37.037 0.00 0.00 46.34 2.40
736 741 5.659440 TCTTAAATTTCCACCCTCAATGC 57.341 39.130 0.00 0.00 0.00 3.56
991 997 7.288810 ACATTCCTCTTTTCATTGCAAAGTA 57.711 32.000 1.71 0.00 33.61 2.24
1224 1230 9.997172 ACCCTAGATTCTTTCCTTTGATAAATT 57.003 29.630 0.00 0.00 0.00 1.82
1225 1231 9.997172 AACCCTAGATTCTTTCCTTTGATAAAT 57.003 29.630 0.00 0.00 0.00 1.40
1234 1241 7.569599 TTTCACTAACCCTAGATTCTTTCCT 57.430 36.000 0.00 0.00 0.00 3.36
1453 1461 4.514401 AGACATTACTTCGGGAATTCCAC 58.486 43.478 25.67 13.87 37.91 4.02
1502 1511 8.626526 GTGTTTACTTGTTCTGGAATCCTTTAA 58.373 33.333 0.00 0.00 0.00 1.52
1615 1628 8.891720 CAAAATCCTTCCAAAAATTTTGAGTCA 58.108 29.630 18.98 0.00 45.39 3.41
1766 1779 4.112634 CTCATACGGCTCGAGAAAATGAA 58.887 43.478 18.75 3.77 0.00 2.57
1791 1804 6.482308 CCCCTAGAAACGTATATGAGGTTTTG 59.518 42.308 0.00 0.00 44.20 2.44
1816 1834 6.537660 GGGATATATGTAGATAAACAACGCCC 59.462 42.308 0.00 0.00 32.02 6.13
1835 1854 7.482169 TCGATAGACAGCTTTATTGGGATAT 57.518 36.000 0.00 0.00 42.67 1.63
1892 1911 8.533569 AACCTACTTTTTGAAGATCTTTTCCA 57.466 30.769 9.87 0.00 0.00 3.53
2182 2201 2.041701 GGGCTTATGTTGGATTGGCAT 58.958 47.619 0.00 0.00 0.00 4.40
2403 2449 1.065418 ACGATGGCCGAATTCTCCTTT 60.065 47.619 3.52 0.00 41.76 3.11
2414 2460 0.600255 GACCCTAATCACGATGGCCG 60.600 60.000 0.00 0.00 45.44 6.13
2551 2599 1.635663 ATTACACCGCGTGCTTCTGC 61.636 55.000 4.92 0.00 36.98 4.26
2559 2607 2.102070 TCAATGGAATTACACCGCGT 57.898 45.000 4.92 0.00 32.46 6.01
2596 2644 3.330720 CACCCAGGTGTCCCCCTC 61.331 72.222 8.75 0.00 40.91 4.30
2601 2649 4.660938 GTGCCCACCCAGGTGTCC 62.661 72.222 15.49 6.55 44.02 4.02
2602 2650 3.429372 TTGTGCCCACCCAGGTGTC 62.429 63.158 15.49 7.58 44.02 3.67
2603 2651 3.425014 TTGTGCCCACCCAGGTGT 61.425 61.111 15.49 0.00 44.02 4.16
2604 2652 2.912025 GTTGTGCCCACCCAGGTG 60.912 66.667 10.00 10.00 45.02 4.00
2605 2653 4.218686 GGTTGTGCCCACCCAGGT 62.219 66.667 0.00 0.00 34.66 4.00
2630 2678 4.778143 CTGTAGGGGGTGGCGCAC 62.778 72.222 10.83 5.50 0.00 5.34
2640 2688 4.473520 CTGGGCACGCCTGTAGGG 62.474 72.222 8.20 0.00 36.10 3.53
2641 2689 4.473520 CCTGGGCACGCCTGTAGG 62.474 72.222 8.20 9.67 36.10 3.18
2642 2690 3.706373 ACCTGGGCACGCCTGTAG 61.706 66.667 8.20 4.50 36.10 2.74
2643 2691 4.015406 CACCTGGGCACGCCTGTA 62.015 66.667 8.20 0.00 36.10 2.74
2661 2709 2.593436 CACCACGTGGGGACAACC 60.593 66.667 36.47 0.00 42.67 3.77
2679 2727 4.344865 TTTCAGGGTCTGCGGGGC 62.345 66.667 0.00 0.00 0.00 5.80
2680 2728 2.359975 GTTTCAGGGTCTGCGGGG 60.360 66.667 0.00 0.00 0.00 5.73
2681 2729 1.672356 CAGTTTCAGGGTCTGCGGG 60.672 63.158 0.00 0.00 0.00 6.13
2682 2730 0.951040 GTCAGTTTCAGGGTCTGCGG 60.951 60.000 0.00 0.00 0.00 5.69
2683 2731 1.284982 CGTCAGTTTCAGGGTCTGCG 61.285 60.000 0.00 0.00 0.00 5.18
2684 2732 1.569479 GCGTCAGTTTCAGGGTCTGC 61.569 60.000 0.00 0.00 0.00 4.26
2685 2733 0.034059 AGCGTCAGTTTCAGGGTCTG 59.966 55.000 0.00 0.00 0.00 3.51
2686 2734 1.629043 TAGCGTCAGTTTCAGGGTCT 58.371 50.000 0.00 0.00 0.00 3.85
2687 2735 2.674796 ATAGCGTCAGTTTCAGGGTC 57.325 50.000 0.00 0.00 0.00 4.46
2688 2736 4.546829 TTTATAGCGTCAGTTTCAGGGT 57.453 40.909 0.00 0.00 0.00 4.34
2689 2737 5.007724 GGATTTTATAGCGTCAGTTTCAGGG 59.992 44.000 0.00 0.00 0.00 4.45
2690 2738 5.817816 AGGATTTTATAGCGTCAGTTTCAGG 59.182 40.000 0.00 0.00 0.00 3.86
2691 2739 6.910536 AGGATTTTATAGCGTCAGTTTCAG 57.089 37.500 0.00 0.00 0.00 3.02
2692 2740 8.958119 AATAGGATTTTATAGCGTCAGTTTCA 57.042 30.769 0.00 0.00 0.00 2.69
2696 2744 8.837389 GGAAAAATAGGATTTTATAGCGTCAGT 58.163 33.333 0.00 0.00 32.85 3.41
2697 2745 8.836413 TGGAAAAATAGGATTTTATAGCGTCAG 58.164 33.333 0.00 0.00 32.85 3.51
2698 2746 8.740123 TGGAAAAATAGGATTTTATAGCGTCA 57.260 30.769 0.00 0.00 32.85 4.35
2699 2747 9.052759 TCTGGAAAAATAGGATTTTATAGCGTC 57.947 33.333 0.00 0.00 32.85 5.19
2700 2748 8.974060 TCTGGAAAAATAGGATTTTATAGCGT 57.026 30.769 0.00 0.00 32.85 5.07
2701 2749 9.273016 TCTCTGGAAAAATAGGATTTTATAGCG 57.727 33.333 0.00 0.00 32.85 4.26
2718 2766 6.274672 TCTTTCTCCCCTATTTTCTCTGGAAA 59.725 38.462 0.00 0.00 39.38 3.13
2719 2767 5.790618 TCTTTCTCCCCTATTTTCTCTGGAA 59.209 40.000 0.00 0.00 0.00 3.53
2720 2768 5.350547 TCTTTCTCCCCTATTTTCTCTGGA 58.649 41.667 0.00 0.00 0.00 3.86
2721 2769 5.700402 TCTTTCTCCCCTATTTTCTCTGG 57.300 43.478 0.00 0.00 0.00 3.86
2722 2770 9.859152 ATAATTCTTTCTCCCCTATTTTCTCTG 57.141 33.333 0.00 0.00 0.00 3.35
2724 2772 9.853177 TGATAATTCTTTCTCCCCTATTTTCTC 57.147 33.333 0.00 0.00 0.00 2.87
2725 2773 9.634021 GTGATAATTCTTTCTCCCCTATTTTCT 57.366 33.333 0.00 0.00 0.00 2.52
2726 2774 9.408648 TGTGATAATTCTTTCTCCCCTATTTTC 57.591 33.333 0.00 0.00 0.00 2.29
2727 2775 9.942526 ATGTGATAATTCTTTCTCCCCTATTTT 57.057 29.630 0.00 0.00 0.00 1.82
2728 2776 9.942526 AATGTGATAATTCTTTCTCCCCTATTT 57.057 29.630 0.00 0.00 0.00 1.40
2729 2777 9.942526 AAATGTGATAATTCTTTCTCCCCTATT 57.057 29.630 0.00 0.00 0.00 1.73
2730 2778 9.579932 GAAATGTGATAATTCTTTCTCCCCTAT 57.420 33.333 0.00 0.00 0.00 2.57
2731 2779 8.556589 TGAAATGTGATAATTCTTTCTCCCCTA 58.443 33.333 0.00 0.00 0.00 3.53
2732 2780 7.413446 TGAAATGTGATAATTCTTTCTCCCCT 58.587 34.615 0.00 0.00 0.00 4.79
2733 2781 7.645058 TGAAATGTGATAATTCTTTCTCCCC 57.355 36.000 0.00 0.00 0.00 4.81
2734 2782 8.906867 TCATGAAATGTGATAATTCTTTCTCCC 58.093 33.333 0.00 0.00 46.80 4.30
2735 2783 9.947669 CTCATGAAATGTGATAATTCTTTCTCC 57.052 33.333 0.00 0.00 46.80 3.71
2740 2788 9.676861 TCTGTCTCATGAAATGTGATAATTCTT 57.323 29.630 0.00 0.00 46.91 2.52
2741 2789 9.327628 CTCTGTCTCATGAAATGTGATAATTCT 57.672 33.333 0.00 0.00 46.91 2.40
2742 2790 8.068977 GCTCTGTCTCATGAAATGTGATAATTC 58.931 37.037 0.00 0.00 46.91 2.17
2743 2791 7.013083 GGCTCTGTCTCATGAAATGTGATAATT 59.987 37.037 0.00 0.00 46.91 1.40
2744 2792 6.485984 GGCTCTGTCTCATGAAATGTGATAAT 59.514 38.462 0.00 0.00 46.91 1.28
2745 2793 5.819379 GGCTCTGTCTCATGAAATGTGATAA 59.181 40.000 0.00 0.00 46.91 1.75
2746 2794 5.104817 TGGCTCTGTCTCATGAAATGTGATA 60.105 40.000 0.00 0.00 46.91 2.15
2747 2795 4.197750 GGCTCTGTCTCATGAAATGTGAT 58.802 43.478 0.00 0.00 46.91 3.06
2748 2796 3.008266 TGGCTCTGTCTCATGAAATGTGA 59.992 43.478 0.00 0.00 46.80 3.58
2749 2797 3.126514 GTGGCTCTGTCTCATGAAATGTG 59.873 47.826 0.00 0.00 46.80 3.21
2750 2798 3.341823 GTGGCTCTGTCTCATGAAATGT 58.658 45.455 0.00 0.00 46.80 2.71
2752 2800 2.306805 TGGTGGCTCTGTCTCATGAAAT 59.693 45.455 0.00 0.00 0.00 2.17
2753 2801 1.699083 TGGTGGCTCTGTCTCATGAAA 59.301 47.619 0.00 0.00 0.00 2.69
2754 2802 1.351076 TGGTGGCTCTGTCTCATGAA 58.649 50.000 0.00 0.00 0.00 2.57
2755 2803 1.576577 ATGGTGGCTCTGTCTCATGA 58.423 50.000 0.00 0.00 0.00 3.07
2756 2804 2.014857 CAATGGTGGCTCTGTCTCATG 58.985 52.381 0.00 0.00 0.00 3.07
2757 2805 1.632409 ACAATGGTGGCTCTGTCTCAT 59.368 47.619 0.00 0.00 0.00 2.90
2758 2806 1.002430 GACAATGGTGGCTCTGTCTCA 59.998 52.381 0.00 0.00 36.18 3.27
2759 2807 1.277557 AGACAATGGTGGCTCTGTCTC 59.722 52.381 4.65 0.00 39.88 3.36
2760 2808 1.356124 AGACAATGGTGGCTCTGTCT 58.644 50.000 4.65 4.65 39.88 3.41
2761 2809 3.944476 AGACAATGGTGGCTCTGTC 57.056 52.632 0.00 0.00 39.88 3.51
2767 2815 1.168714 GAACAGGAGACAATGGTGGC 58.831 55.000 0.00 0.00 0.00 5.01
2768 2816 2.867109 AGAACAGGAGACAATGGTGG 57.133 50.000 0.00 0.00 0.00 4.61
2769 2817 3.743521 TGAAGAACAGGAGACAATGGTG 58.256 45.455 0.00 0.00 0.00 4.17
2770 2818 4.330250 CATGAAGAACAGGAGACAATGGT 58.670 43.478 0.00 0.00 31.40 3.55
2771 2819 3.693085 CCATGAAGAACAGGAGACAATGG 59.307 47.826 0.00 0.00 31.40 3.16
2772 2820 3.693085 CCCATGAAGAACAGGAGACAATG 59.307 47.826 0.00 0.00 31.40 2.82
2773 2821 3.588842 TCCCATGAAGAACAGGAGACAAT 59.411 43.478 0.00 0.00 31.40 2.71
2774 2822 2.978978 TCCCATGAAGAACAGGAGACAA 59.021 45.455 0.00 0.00 31.40 3.18
2775 2823 2.619931 TCCCATGAAGAACAGGAGACA 58.380 47.619 0.00 0.00 31.40 3.41
2776 2824 3.703001 TTCCCATGAAGAACAGGAGAC 57.297 47.619 0.00 0.00 31.40 3.36
2787 2835 1.213678 CCAGATCTGGCTTCCCATGAA 59.786 52.381 28.45 0.00 44.73 2.57
2788 2836 0.841961 CCAGATCTGGCTTCCCATGA 59.158 55.000 28.45 0.00 44.73 3.07
2789 2837 3.416253 CCAGATCTGGCTTCCCATG 57.584 57.895 28.45 2.08 44.73 3.66
2800 2848 1.765314 CCCCGAACAGATTCCAGATCT 59.235 52.381 0.00 0.00 0.00 2.75
2801 2849 1.811941 GCCCCGAACAGATTCCAGATC 60.812 57.143 0.00 0.00 0.00 2.75
2802 2850 0.181350 GCCCCGAACAGATTCCAGAT 59.819 55.000 0.00 0.00 0.00 2.90
2803 2851 0.909610 AGCCCCGAACAGATTCCAGA 60.910 55.000 0.00 0.00 0.00 3.86
2804 2852 0.462759 GAGCCCCGAACAGATTCCAG 60.463 60.000 0.00 0.00 0.00 3.86
2805 2853 1.602237 GAGCCCCGAACAGATTCCA 59.398 57.895 0.00 0.00 0.00 3.53
2806 2854 1.153147 GGAGCCCCGAACAGATTCC 60.153 63.158 0.00 0.00 0.00 3.01
2807 2855 0.462759 CTGGAGCCCCGAACAGATTC 60.463 60.000 0.00 0.00 32.86 2.52
2808 2856 0.909610 TCTGGAGCCCCGAACAGATT 60.910 55.000 0.00 0.00 35.24 2.40
2809 2857 1.306141 TCTGGAGCCCCGAACAGAT 60.306 57.895 0.00 0.00 35.24 2.90
2810 2858 1.984570 CTCTGGAGCCCCGAACAGA 60.985 63.158 0.00 0.00 37.61 3.41
2811 2859 1.954362 CTCTCTGGAGCCCCGAACAG 61.954 65.000 0.00 0.00 34.29 3.16
2812 2860 1.984570 CTCTCTGGAGCCCCGAACA 60.985 63.158 0.00 0.00 34.29 3.18
2813 2861 2.726351 CCTCTCTGGAGCCCCGAAC 61.726 68.421 0.00 0.00 38.21 3.95
2814 2862 2.364317 CCTCTCTGGAGCCCCGAA 60.364 66.667 0.00 0.00 38.21 4.30
2815 2863 4.465446 CCCTCTCTGGAGCCCCGA 62.465 72.222 0.00 0.00 38.21 5.14
2818 2866 2.037304 TATCCCCCTCTCTGGAGCCC 62.037 65.000 0.00 0.00 38.21 5.19
2819 2867 0.118144 ATATCCCCCTCTCTGGAGCC 59.882 60.000 0.00 0.00 38.21 4.70
2820 2868 1.905894 GAATATCCCCCTCTCTGGAGC 59.094 57.143 0.00 0.00 38.21 4.70
2821 2869 2.175202 CGAATATCCCCCTCTCTGGAG 58.825 57.143 0.00 0.00 38.35 3.86
2822 2870 1.787058 TCGAATATCCCCCTCTCTGGA 59.213 52.381 0.00 0.00 38.35 3.86
2823 2871 2.310779 TCGAATATCCCCCTCTCTGG 57.689 55.000 0.00 0.00 0.00 3.86
2824 2872 3.707316 AGATCGAATATCCCCCTCTCTG 58.293 50.000 0.00 0.00 0.00 3.35
2825 2873 4.412060 AAGATCGAATATCCCCCTCTCT 57.588 45.455 0.00 0.00 0.00 3.10
2826 2874 4.284746 ACAAAGATCGAATATCCCCCTCTC 59.715 45.833 0.00 0.00 0.00 3.20
2827 2875 4.235372 ACAAAGATCGAATATCCCCCTCT 58.765 43.478 0.00 0.00 0.00 3.69
2828 2876 4.040461 TGACAAAGATCGAATATCCCCCTC 59.960 45.833 0.00 0.00 0.00 4.30
2829 2877 3.973973 TGACAAAGATCGAATATCCCCCT 59.026 43.478 0.00 0.00 0.00 4.79
2830 2878 4.351874 TGACAAAGATCGAATATCCCCC 57.648 45.455 0.00 0.00 0.00 5.40
2831 2879 5.551233 TGATGACAAAGATCGAATATCCCC 58.449 41.667 0.00 0.00 0.00 4.81
2832 2880 6.875726 TGATGATGACAAAGATCGAATATCCC 59.124 38.462 0.00 0.00 0.00 3.85
2833 2881 7.895975 TGATGATGACAAAGATCGAATATCC 57.104 36.000 0.00 0.00 0.00 2.59
2834 2882 8.226448 GGTTGATGATGACAAAGATCGAATATC 58.774 37.037 0.00 0.00 0.00 1.63
2835 2883 7.173907 GGGTTGATGATGACAAAGATCGAATAT 59.826 37.037 0.00 0.00 0.00 1.28
2836 2884 6.483307 GGGTTGATGATGACAAAGATCGAATA 59.517 38.462 0.00 0.00 0.00 1.75
2837 2885 5.297776 GGGTTGATGATGACAAAGATCGAAT 59.702 40.000 0.00 0.00 0.00 3.34
2838 2886 4.635765 GGGTTGATGATGACAAAGATCGAA 59.364 41.667 0.00 0.00 0.00 3.71
2839 2887 4.080919 AGGGTTGATGATGACAAAGATCGA 60.081 41.667 0.00 0.00 0.00 3.59
2840 2888 4.194640 AGGGTTGATGATGACAAAGATCG 58.805 43.478 0.00 0.00 0.00 3.69
2841 2889 5.884792 AGAAGGGTTGATGATGACAAAGATC 59.115 40.000 0.00 0.00 0.00 2.75
2842 2890 5.824421 AGAAGGGTTGATGATGACAAAGAT 58.176 37.500 0.00 0.00 0.00 2.40
2843 2891 5.246981 AGAAGGGTTGATGATGACAAAGA 57.753 39.130 0.00 0.00 0.00 2.52
2844 2892 4.397417 GGAGAAGGGTTGATGATGACAAAG 59.603 45.833 0.00 0.00 0.00 2.77
2845 2893 4.202556 TGGAGAAGGGTTGATGATGACAAA 60.203 41.667 0.00 0.00 0.00 2.83
2846 2894 3.330405 TGGAGAAGGGTTGATGATGACAA 59.670 43.478 0.00 0.00 0.00 3.18
2847 2895 2.912295 TGGAGAAGGGTTGATGATGACA 59.088 45.455 0.00 0.00 0.00 3.58
2848 2896 3.634397 TGGAGAAGGGTTGATGATGAC 57.366 47.619 0.00 0.00 0.00 3.06
2849 2897 3.181462 CGATGGAGAAGGGTTGATGATGA 60.181 47.826 0.00 0.00 0.00 2.92
2850 2898 3.136763 CGATGGAGAAGGGTTGATGATG 58.863 50.000 0.00 0.00 0.00 3.07
2851 2899 2.486191 GCGATGGAGAAGGGTTGATGAT 60.486 50.000 0.00 0.00 0.00 2.45
2852 2900 1.134401 GCGATGGAGAAGGGTTGATGA 60.134 52.381 0.00 0.00 0.00 2.92
2853 2901 1.303309 GCGATGGAGAAGGGTTGATG 58.697 55.000 0.00 0.00 0.00 3.07
2854 2902 0.181350 GGCGATGGAGAAGGGTTGAT 59.819 55.000 0.00 0.00 0.00 2.57
2855 2903 1.198094 TGGCGATGGAGAAGGGTTGA 61.198 55.000 0.00 0.00 0.00 3.18
2856 2904 0.322456 TTGGCGATGGAGAAGGGTTG 60.322 55.000 0.00 0.00 0.00 3.77
2857 2905 0.625849 ATTGGCGATGGAGAAGGGTT 59.374 50.000 0.00 0.00 0.00 4.11
2858 2906 0.625849 AATTGGCGATGGAGAAGGGT 59.374 50.000 0.00 0.00 0.00 4.34
2859 2907 1.312815 GAATTGGCGATGGAGAAGGG 58.687 55.000 0.00 0.00 0.00 3.95
2860 2908 1.312815 GGAATTGGCGATGGAGAAGG 58.687 55.000 0.00 0.00 0.00 3.46
2861 2909 2.042686 TGGAATTGGCGATGGAGAAG 57.957 50.000 0.00 0.00 0.00 2.85
2862 2910 2.092484 TCATGGAATTGGCGATGGAGAA 60.092 45.455 0.00 0.00 0.00 2.87
2863 2911 1.490069 TCATGGAATTGGCGATGGAGA 59.510 47.619 0.00 0.00 0.00 3.71
2864 2912 1.971481 TCATGGAATTGGCGATGGAG 58.029 50.000 0.00 0.00 0.00 3.86
2865 2913 2.232399 CATCATGGAATTGGCGATGGA 58.768 47.619 0.00 0.00 31.80 3.41
2866 2914 1.336517 GCATCATGGAATTGGCGATGG 60.337 52.381 0.00 0.00 35.18 3.51
2867 2915 1.611977 AGCATCATGGAATTGGCGATG 59.388 47.619 0.00 0.00 37.20 3.84
2868 2916 1.884579 GAGCATCATGGAATTGGCGAT 59.115 47.619 0.00 0.00 33.17 4.58
2869 2917 1.311859 GAGCATCATGGAATTGGCGA 58.688 50.000 0.00 0.00 33.17 5.54
2870 2918 0.313043 GGAGCATCATGGAATTGGCG 59.687 55.000 0.00 0.00 36.25 5.69
2871 2919 0.677842 GGGAGCATCATGGAATTGGC 59.322 55.000 0.00 0.00 36.25 4.52
2872 2920 1.335145 GGGGAGCATCATGGAATTGG 58.665 55.000 0.00 0.00 36.25 3.16
2873 2921 1.684983 GTGGGGAGCATCATGGAATTG 59.315 52.381 0.00 0.00 36.25 2.32
2874 2922 1.412074 GGTGGGGAGCATCATGGAATT 60.412 52.381 0.00 0.00 36.25 2.17
2875 2923 0.186873 GGTGGGGAGCATCATGGAAT 59.813 55.000 0.00 0.00 36.25 3.01
2876 2924 0.920763 AGGTGGGGAGCATCATGGAA 60.921 55.000 0.00 0.00 36.25 3.53
2877 2925 1.308128 AGGTGGGGAGCATCATGGA 60.308 57.895 0.00 0.00 36.25 3.41
2878 2926 1.152819 CAGGTGGGGAGCATCATGG 60.153 63.158 0.00 0.00 36.25 3.66
2879 2927 1.152819 CCAGGTGGGGAGCATCATG 60.153 63.158 0.00 0.00 36.25 3.07
2880 2928 1.308128 TCCAGGTGGGGAGCATCAT 60.308 57.895 0.00 0.00 36.25 2.45
2881 2929 2.124768 TCCAGGTGGGGAGCATCA 59.875 61.111 0.00 0.00 36.25 3.07
2890 2938 2.840651 AGGAATTACTCACTCCAGGTGG 59.159 50.000 0.00 0.00 45.38 4.61
2891 2939 4.508662 GAAGGAATTACTCACTCCAGGTG 58.491 47.826 0.00 0.00 46.60 4.00
2892 2940 3.195825 CGAAGGAATTACTCACTCCAGGT 59.804 47.826 0.00 0.00 0.00 4.00
2893 2941 3.195825 ACGAAGGAATTACTCACTCCAGG 59.804 47.826 0.00 0.00 0.00 4.45
2894 2942 4.457834 ACGAAGGAATTACTCACTCCAG 57.542 45.455 0.00 0.00 0.00 3.86
2895 2943 5.578005 CTACGAAGGAATTACTCACTCCA 57.422 43.478 0.00 0.00 0.00 3.86
2909 2957 2.105128 CCAGCGAGCCTACGAAGG 59.895 66.667 0.00 0.00 46.76 3.46
2910 2958 1.226717 GACCAGCGAGCCTACGAAG 60.227 63.158 0.00 0.00 35.09 3.79
2911 2959 2.882876 GACCAGCGAGCCTACGAA 59.117 61.111 0.00 0.00 35.09 3.85
2912 2960 3.506096 CGACCAGCGAGCCTACGA 61.506 66.667 0.00 0.00 44.57 3.43
2913 2961 4.554363 CCGACCAGCGAGCCTACG 62.554 72.222 0.00 0.00 44.57 3.51
2914 2962 3.450115 ACCGACCAGCGAGCCTAC 61.450 66.667 0.00 0.00 44.57 3.18
2915 2963 3.449227 CACCGACCAGCGAGCCTA 61.449 66.667 0.00 0.00 44.57 3.93
2917 2965 4.803426 CTCACCGACCAGCGAGCC 62.803 72.222 0.00 0.00 44.57 4.70
2918 2966 4.803426 CCTCACCGACCAGCGAGC 62.803 72.222 0.00 0.00 44.57 5.03
2919 2967 3.057547 CTCCTCACCGACCAGCGAG 62.058 68.421 0.00 0.00 44.57 5.03
2920 2968 3.062466 CTCCTCACCGACCAGCGA 61.062 66.667 0.00 0.00 44.57 4.93
2921 2969 2.932234 AACTCCTCACCGACCAGCG 61.932 63.158 0.00 0.00 40.47 5.18
2922 2970 1.374758 CAACTCCTCACCGACCAGC 60.375 63.158 0.00 0.00 0.00 4.85
2923 2971 1.185618 TCCAACTCCTCACCGACCAG 61.186 60.000 0.00 0.00 0.00 4.00
2924 2972 0.544357 ATCCAACTCCTCACCGACCA 60.544 55.000 0.00 0.00 0.00 4.02
2925 2973 0.108138 CATCCAACTCCTCACCGACC 60.108 60.000 0.00 0.00 0.00 4.79
2926 2974 0.108138 CCATCCAACTCCTCACCGAC 60.108 60.000 0.00 0.00 0.00 4.79
2927 2975 1.264749 CCCATCCAACTCCTCACCGA 61.265 60.000 0.00 0.00 0.00 4.69
2928 2976 1.221840 CCCATCCAACTCCTCACCG 59.778 63.158 0.00 0.00 0.00 4.94
2929 2977 1.216990 ATCCCATCCAACTCCTCACC 58.783 55.000 0.00 0.00 0.00 4.02
2930 2978 2.239654 TCAATCCCATCCAACTCCTCAC 59.760 50.000 0.00 0.00 0.00 3.51
2931 2979 2.561187 TCAATCCCATCCAACTCCTCA 58.439 47.619 0.00 0.00 0.00 3.86
2932 2980 3.282885 GTTCAATCCCATCCAACTCCTC 58.717 50.000 0.00 0.00 0.00 3.71
2933 2981 2.649312 TGTTCAATCCCATCCAACTCCT 59.351 45.455 0.00 0.00 0.00 3.69
2934 2982 3.085952 TGTTCAATCCCATCCAACTCC 57.914 47.619 0.00 0.00 0.00 3.85
2935 2983 4.019174 ACATGTTCAATCCCATCCAACTC 58.981 43.478 0.00 0.00 0.00 3.01
2936 2984 4.019174 GACATGTTCAATCCCATCCAACT 58.981 43.478 0.00 0.00 0.00 3.16
2937 2985 3.763360 TGACATGTTCAATCCCATCCAAC 59.237 43.478 0.00 0.00 0.00 3.77
2938 2986 4.044946 TGACATGTTCAATCCCATCCAA 57.955 40.909 0.00 0.00 0.00 3.53
2939 2987 3.735720 TGACATGTTCAATCCCATCCA 57.264 42.857 0.00 0.00 0.00 3.41
2940 2988 4.209538 TGATGACATGTTCAATCCCATCC 58.790 43.478 15.09 3.13 37.92 3.51
2941 2989 5.359009 ACTTGATGACATGTTCAATCCCATC 59.641 40.000 12.25 12.25 37.92 3.51
2942 2990 5.266788 ACTTGATGACATGTTCAATCCCAT 58.733 37.500 12.25 3.87 37.92 4.00
2943 2991 4.665451 ACTTGATGACATGTTCAATCCCA 58.335 39.130 12.25 0.00 37.92 4.37
2944 2992 5.649782 AACTTGATGACATGTTCAATCCC 57.350 39.130 12.25 0.00 39.17 3.85
2945 2993 7.383102 ACTAACTTGATGACATGTTCAATCC 57.617 36.000 12.25 0.00 41.96 3.01
2946 2994 9.683069 AAAACTAACTTGATGACATGTTCAATC 57.317 29.630 12.25 10.58 41.96 2.67
2947 2995 9.467258 CAAAACTAACTTGATGACATGTTCAAT 57.533 29.630 12.25 3.34 41.96 2.57
2948 2996 8.465999 ACAAAACTAACTTGATGACATGTTCAA 58.534 29.630 11.50 11.50 41.96 2.69
2949 2997 7.995289 ACAAAACTAACTTGATGACATGTTCA 58.005 30.769 0.00 0.00 41.96 3.18
2950 2998 8.856490 AACAAAACTAACTTGATGACATGTTC 57.144 30.769 0.00 0.00 41.96 3.18
2951 2999 9.950680 CTAACAAAACTAACTTGATGACATGTT 57.049 29.630 0.00 0.00 43.43 2.71
2952 3000 8.567948 CCTAACAAAACTAACTTGATGACATGT 58.432 33.333 0.00 0.00 36.24 3.21
2953 3001 8.023128 CCCTAACAAAACTAACTTGATGACATG 58.977 37.037 0.00 0.00 0.00 3.21
2954 3002 7.309194 GCCCTAACAAAACTAACTTGATGACAT 60.309 37.037 0.00 0.00 0.00 3.06
2955 3003 6.016610 GCCCTAACAAAACTAACTTGATGACA 60.017 38.462 0.00 0.00 0.00 3.58
2956 3004 6.206829 AGCCCTAACAAAACTAACTTGATGAC 59.793 38.462 0.00 0.00 0.00 3.06
2957 3005 6.303839 AGCCCTAACAAAACTAACTTGATGA 58.696 36.000 0.00 0.00 0.00 2.92
2958 3006 6.575162 AGCCCTAACAAAACTAACTTGATG 57.425 37.500 0.00 0.00 0.00 3.07
2959 3007 6.775629 TCAAGCCCTAACAAAACTAACTTGAT 59.224 34.615 0.00 0.00 36.88 2.57
2960 3008 6.123651 TCAAGCCCTAACAAAACTAACTTGA 58.876 36.000 0.00 0.00 38.80 3.02
2961 3009 6.385649 TCAAGCCCTAACAAAACTAACTTG 57.614 37.500 0.00 0.00 34.69 3.16
2962 3010 6.208797 GGATCAAGCCCTAACAAAACTAACTT 59.791 38.462 0.00 0.00 0.00 2.66
2963 3011 5.710567 GGATCAAGCCCTAACAAAACTAACT 59.289 40.000 0.00 0.00 0.00 2.24
2964 3012 5.105877 GGGATCAAGCCCTAACAAAACTAAC 60.106 44.000 0.00 0.00 45.12 2.34
2965 3013 5.014202 GGGATCAAGCCCTAACAAAACTAA 58.986 41.667 0.00 0.00 45.12 2.24
2966 3014 4.595986 GGGATCAAGCCCTAACAAAACTA 58.404 43.478 0.00 0.00 45.12 2.24
2967 3015 3.431415 GGGATCAAGCCCTAACAAAACT 58.569 45.455 0.00 0.00 45.12 2.66
2968 3016 3.868757 GGGATCAAGCCCTAACAAAAC 57.131 47.619 0.00 0.00 45.12 2.43
2977 3025 2.621070 TGGATACTAGGGATCAAGCCC 58.379 52.381 0.00 0.00 43.32 5.19
2978 3026 4.917906 AATGGATACTAGGGATCAAGCC 57.082 45.455 8.63 0.00 37.61 4.35
2979 3027 6.951971 ACATAATGGATACTAGGGATCAAGC 58.048 40.000 8.63 0.00 37.61 4.01
2980 3028 8.820831 AGAACATAATGGATACTAGGGATCAAG 58.179 37.037 8.63 0.00 37.61 3.02
2981 3029 8.597167 CAGAACATAATGGATACTAGGGATCAA 58.403 37.037 8.63 0.00 37.61 2.57
2982 3030 7.955750 TCAGAACATAATGGATACTAGGGATCA 59.044 37.037 8.63 0.00 37.61 2.92
2983 3031 8.367660 TCAGAACATAATGGATACTAGGGATC 57.632 38.462 0.00 0.00 37.61 3.36
2984 3032 8.180165 TCTCAGAACATAATGGATACTAGGGAT 58.820 37.037 0.00 0.00 37.61 3.85
2985 3033 7.535738 TCTCAGAACATAATGGATACTAGGGA 58.464 38.462 0.00 0.00 37.61 4.20
2986 3034 7.782897 TCTCAGAACATAATGGATACTAGGG 57.217 40.000 0.00 0.00 37.61 3.53
2987 3035 9.650539 CAATCTCAGAACATAATGGATACTAGG 57.349 37.037 0.00 0.00 37.61 3.02
2990 3038 9.722184 CATCAATCTCAGAACATAATGGATACT 57.278 33.333 0.00 0.00 37.61 2.12
2991 3039 9.499479 ACATCAATCTCAGAACATAATGGATAC 57.501 33.333 0.00 0.00 0.00 2.24
2993 3041 8.847196 CAACATCAATCTCAGAACATAATGGAT 58.153 33.333 0.00 0.00 0.00 3.41
2994 3042 7.201758 GCAACATCAATCTCAGAACATAATGGA 60.202 37.037 0.00 0.00 0.00 3.41
2995 3043 6.916387 GCAACATCAATCTCAGAACATAATGG 59.084 38.462 0.00 0.00 0.00 3.16
2996 3044 7.704271 AGCAACATCAATCTCAGAACATAATG 58.296 34.615 0.00 0.00 0.00 1.90
2997 3045 7.876936 AGCAACATCAATCTCAGAACATAAT 57.123 32.000 0.00 0.00 0.00 1.28
2998 3046 8.833493 CATAGCAACATCAATCTCAGAACATAA 58.167 33.333 0.00 0.00 0.00 1.90
2999 3047 8.206189 TCATAGCAACATCAATCTCAGAACATA 58.794 33.333 0.00 0.00 0.00 2.29
3000 3048 7.012138 GTCATAGCAACATCAATCTCAGAACAT 59.988 37.037 0.00 0.00 0.00 2.71
3001 3049 6.314648 GTCATAGCAACATCAATCTCAGAACA 59.685 38.462 0.00 0.00 0.00 3.18
3002 3050 6.538021 AGTCATAGCAACATCAATCTCAGAAC 59.462 38.462 0.00 0.00 0.00 3.01
3003 3051 6.647229 AGTCATAGCAACATCAATCTCAGAA 58.353 36.000 0.00 0.00 0.00 3.02
3004 3052 6.231258 AGTCATAGCAACATCAATCTCAGA 57.769 37.500 0.00 0.00 0.00 3.27
3005 3053 6.922247 AAGTCATAGCAACATCAATCTCAG 57.078 37.500 0.00 0.00 0.00 3.35
3006 3054 6.403964 GCAAAGTCATAGCAACATCAATCTCA 60.404 38.462 0.00 0.00 0.00 3.27
3007 3055 5.970023 GCAAAGTCATAGCAACATCAATCTC 59.030 40.000 0.00 0.00 0.00 2.75
3008 3056 5.163581 GGCAAAGTCATAGCAACATCAATCT 60.164 40.000 0.00 0.00 0.00 2.40
3009 3057 5.039333 GGCAAAGTCATAGCAACATCAATC 58.961 41.667 0.00 0.00 0.00 2.67
3010 3058 4.463539 TGGCAAAGTCATAGCAACATCAAT 59.536 37.500 0.00 0.00 0.00 2.57
3011 3059 3.825585 TGGCAAAGTCATAGCAACATCAA 59.174 39.130 0.00 0.00 0.00 2.57
3012 3060 3.419943 TGGCAAAGTCATAGCAACATCA 58.580 40.909 0.00 0.00 0.00 3.07
3013 3061 4.357142 CATGGCAAAGTCATAGCAACATC 58.643 43.478 0.00 0.00 0.00 3.06
3014 3062 3.429822 GCATGGCAAAGTCATAGCAACAT 60.430 43.478 0.00 0.00 0.00 2.71
3015 3063 2.094597 GCATGGCAAAGTCATAGCAACA 60.095 45.455 0.00 0.00 0.00 3.33
3016 3064 2.165030 AGCATGGCAAAGTCATAGCAAC 59.835 45.455 0.00 0.00 29.23 4.17
3017 3065 2.449464 AGCATGGCAAAGTCATAGCAA 58.551 42.857 0.00 0.00 29.23 3.91
3018 3066 2.133281 AGCATGGCAAAGTCATAGCA 57.867 45.000 0.00 0.00 29.23 3.49
3019 3067 4.637483 TTAAGCATGGCAAAGTCATAGC 57.363 40.909 0.00 0.00 0.00 2.97
3020 3068 4.980434 GCATTAAGCATGGCAAAGTCATAG 59.020 41.667 0.00 0.00 44.79 2.23
3021 3069 4.935702 GCATTAAGCATGGCAAAGTCATA 58.064 39.130 0.00 0.00 44.79 2.15
3022 3070 3.788937 GCATTAAGCATGGCAAAGTCAT 58.211 40.909 0.00 0.00 44.79 3.06
3023 3071 3.235157 GCATTAAGCATGGCAAAGTCA 57.765 42.857 0.00 0.00 44.79 3.41
3024 3072 4.856922 ACAAGCATTAAGCATGGCAAAGTC 60.857 41.667 0.00 0.00 45.81 3.01
3025 3073 3.007182 ACAAGCATTAAGCATGGCAAAGT 59.993 39.130 0.00 0.00 45.81 2.66
3026 3074 3.592059 ACAAGCATTAAGCATGGCAAAG 58.408 40.909 0.00 0.00 45.81 2.77
3027 3075 3.681593 ACAAGCATTAAGCATGGCAAA 57.318 38.095 0.00 0.00 45.81 3.68
3031 3079 4.445452 AAGTGACAAGCATTAAGCATGG 57.555 40.909 0.00 0.00 45.81 3.66
3033 3081 8.456214 GTCCCAAAGTGACAAGCATTAAGCAT 62.456 42.308 0.00 0.00 37.98 3.79
3034 3082 7.231762 GTCCCAAAGTGACAAGCATTAAGCA 62.232 44.000 0.00 0.00 37.98 3.91
3035 3083 3.255642 TCCCAAAGTGACAAGCATTAAGC 59.744 43.478 0.00 0.00 46.19 3.09
3036 3084 4.321230 GGTCCCAAAGTGACAAGCATTAAG 60.321 45.833 0.00 0.00 34.36 1.85
3037 3085 3.572255 GGTCCCAAAGTGACAAGCATTAA 59.428 43.478 0.00 0.00 34.36 1.40
3038 3086 3.153919 GGTCCCAAAGTGACAAGCATTA 58.846 45.455 0.00 0.00 34.36 1.90
3039 3087 1.963515 GGTCCCAAAGTGACAAGCATT 59.036 47.619 0.00 0.00 34.36 3.56
3040 3088 1.620822 GGTCCCAAAGTGACAAGCAT 58.379 50.000 0.00 0.00 34.36 3.79
3041 3089 0.817634 CGGTCCCAAAGTGACAAGCA 60.818 55.000 0.00 0.00 34.36 3.91
3042 3090 1.515521 CCGGTCCCAAAGTGACAAGC 61.516 60.000 0.00 0.00 34.36 4.01
3043 3091 0.889186 CCCGGTCCCAAAGTGACAAG 60.889 60.000 0.00 0.00 34.36 3.16
3044 3092 1.149627 CCCGGTCCCAAAGTGACAA 59.850 57.895 0.00 0.00 34.36 3.18
3045 3093 2.073716 ACCCGGTCCCAAAGTGACA 61.074 57.895 0.00 0.00 34.36 3.58
3046 3094 2.833957 ACCCGGTCCCAAAGTGAC 59.166 61.111 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.