Multiple sequence alignment - TraesCS7B01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G091200 chr7B 100.000 4242 0 0 1 4242 105232743 105236984 0.000000e+00 7834
1 TraesCS7B01G091200 chr5D 96.214 4252 143 13 1 4242 503225673 503221430 0.000000e+00 6944
2 TraesCS7B01G091200 chr5D 95.578 4251 168 15 2 4242 6196390 6192150 0.000000e+00 6791
3 TraesCS7B01G091200 chr3A 96.119 4251 148 12 1 4242 66010168 66014410 0.000000e+00 6920
4 TraesCS7B01G091200 chr3A 95.508 4252 173 12 1 4242 672902558 672906801 0.000000e+00 6778
5 TraesCS7B01G091200 chrUn 96.024 4250 152 12 1 4242 216511153 216515393 0.000000e+00 6896
6 TraesCS7B01G091200 chrUn 96.024 4250 152 12 1 4242 286272230 286267990 0.000000e+00 6896
7 TraesCS7B01G091200 chrUn 95.090 387 9 5 3860 4242 412653253 412653633 6.070000e-168 601
8 TraesCS7B01G091200 chr2B 95.833 4248 163 10 1 4242 474915895 474911656 0.000000e+00 6852
9 TraesCS7B01G091200 chr3B 95.768 4253 162 11 1 4242 201534484 201530239 0.000000e+00 6841
10 TraesCS7B01G091200 chr1B 95.868 3969 155 9 1 3963 633746443 633750408 0.000000e+00 6412
11 TraesCS7B01G091200 chr1A 96.235 1567 48 6 2681 4242 554517023 554515463 0.000000e+00 2556
12 TraesCS7B01G091200 chr4A 94.000 500 20 8 3746 4242 309522614 309522122 0.000000e+00 749


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G091200 chr7B 105232743 105236984 4241 False 7834 7834 100.000 1 4242 1 chr7B.!!$F1 4241
1 TraesCS7B01G091200 chr5D 503221430 503225673 4243 True 6944 6944 96.214 1 4242 1 chr5D.!!$R2 4241
2 TraesCS7B01G091200 chr5D 6192150 6196390 4240 True 6791 6791 95.578 2 4242 1 chr5D.!!$R1 4240
3 TraesCS7B01G091200 chr3A 66010168 66014410 4242 False 6920 6920 96.119 1 4242 1 chr3A.!!$F1 4241
4 TraesCS7B01G091200 chr3A 672902558 672906801 4243 False 6778 6778 95.508 1 4242 1 chr3A.!!$F2 4241
5 TraesCS7B01G091200 chrUn 216511153 216515393 4240 False 6896 6896 96.024 1 4242 1 chrUn.!!$F1 4241
6 TraesCS7B01G091200 chrUn 286267990 286272230 4240 True 6896 6896 96.024 1 4242 1 chrUn.!!$R1 4241
7 TraesCS7B01G091200 chr2B 474911656 474915895 4239 True 6852 6852 95.833 1 4242 1 chr2B.!!$R1 4241
8 TraesCS7B01G091200 chr3B 201530239 201534484 4245 True 6841 6841 95.768 1 4242 1 chr3B.!!$R1 4241
9 TraesCS7B01G091200 chr1B 633746443 633750408 3965 False 6412 6412 95.868 1 3963 1 chr1B.!!$F1 3962
10 TraesCS7B01G091200 chr1A 554515463 554517023 1560 True 2556 2556 96.235 2681 4242 1 chr1A.!!$R1 1561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 588 0.179067 GTCCGGGTCGAAATATGGCA 60.179 55.0 0.00 0.00 0.00 4.92 F
1967 1976 3.019564 CAGGGTCAGGAACAATGAATCC 58.980 50.0 2.46 2.46 35.88 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2229 1.133363 TCCTTTCCACCTTGGTTCGA 58.867 50.000 0.0 0.0 39.03 3.71 R
3822 3834 1.899814 TCGCCTGTCTACCATTTCACT 59.100 47.619 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 6.800408 CCGTATTCGATGAAAGTCGTATGTAT 59.200 38.462 0.00 0.00 42.07 2.29
227 230 5.066593 ACAGATTCTTGAACCTCTTTCACC 58.933 41.667 0.00 0.00 44.28 4.02
232 235 2.930826 TGAACCTCTTTCACCCTCAC 57.069 50.000 0.00 0.00 39.45 3.51
583 588 0.179067 GTCCGGGTCGAAATATGGCA 60.179 55.000 0.00 0.00 0.00 4.92
599 604 8.962884 AAATATGGCATTCAAATTAAGTTCCC 57.037 30.769 4.78 0.00 0.00 3.97
607 612 9.087424 GCATTCAAATTAAGTTCCCAATTAGTC 57.913 33.333 0.00 0.00 0.00 2.59
632 637 3.160478 GCCAAAGGGAGTGGGGGTT 62.160 63.158 0.00 0.00 36.58 4.11
687 692 3.681034 GCAGAGGCAAATAGAGCTCTTGA 60.681 47.826 23.84 4.83 40.72 3.02
705 710 7.653311 AGCTCTTGAACATTTTTGTTAATCCAC 59.347 33.333 0.00 0.00 31.35 4.02
780 785 6.739331 AGAATCAATAGAAGGAGAATCGGT 57.261 37.500 0.00 0.00 34.37 4.69
781 786 7.130681 AGAATCAATAGAAGGAGAATCGGTT 57.869 36.000 0.00 0.00 34.37 4.44
794 799 6.325028 AGGAGAATCGGTTGATATCTTTCTCA 59.675 38.462 18.96 0.00 36.12 3.27
931 936 5.840693 GGTTTGATCCTATTCATGGGGATTT 59.159 40.000 10.20 0.00 39.63 2.17
975 980 7.519032 AAATCGAAACAATAGGGACTTTTCA 57.481 32.000 0.00 0.00 41.75 2.69
1067 1072 6.302313 ACGAGAATTTTTATGAAAGCGTTTCG 59.698 34.615 0.00 0.00 42.55 3.46
1102 1107 5.852827 TCAATGGAAGTTTCATTTTCCCAC 58.147 37.500 6.65 0.00 41.75 4.61
1189 1194 7.437748 AGATAGACCTTGGTTCTATTTCATCG 58.562 38.462 10.70 0.00 36.59 3.84
1292 1297 7.602517 AATTTCCAAACGAACAATTTCAACA 57.397 28.000 0.00 0.00 0.00 3.33
1390 1395 7.995488 ACATAAATGGCTATAGCAGAGTTTCTT 59.005 33.333 25.53 9.41 44.36 2.52
1422 1427 6.841781 ATTAACAGCTATTCTAGGGGGAAA 57.158 37.500 0.00 0.00 0.00 3.13
1479 1484 6.240894 TCTTTGTAGCTCCAGAATGTTTCAT 58.759 36.000 0.00 0.00 0.00 2.57
1536 1541 4.658063 AGAGATCTACGGTCTAATGAGGG 58.342 47.826 0.00 0.00 0.00 4.30
1597 1602 9.035890 TCTTCTATTCTAGTTCATGGTTTCTCA 57.964 33.333 0.00 0.00 0.00 3.27
1647 1656 3.311966 GAGCTGCAAGAAATTGTGAACC 58.688 45.455 1.02 0.00 34.07 3.62
1692 1701 8.561769 TGTATAACTCCCCAGGAATTTCAATTA 58.438 33.333 0.00 0.00 0.00 1.40
1784 1793 3.254060 CGTCTATGAAGGAGTGTGGTTG 58.746 50.000 0.00 0.00 0.00 3.77
1847 1856 5.559148 TTGGGTTTTGCAAAACTCCATAT 57.441 34.783 37.74 0.00 46.35 1.78
1878 1887 3.663198 AGAGAAATGCTATCCCCACTCT 58.337 45.455 0.00 0.00 0.00 3.24
1967 1976 3.019564 CAGGGTCAGGAACAATGAATCC 58.980 50.000 2.46 2.46 35.88 3.01
2039 2048 7.177832 TCCTACAAAGAATCGGACTAATGAA 57.822 36.000 0.00 0.00 0.00 2.57
2054 2063 7.224753 CGGACTAATGAAGTATACAATGCTTGT 59.775 37.037 5.50 6.74 42.47 3.16
2171 2180 5.014860 TGATCATCTCATGGCTATTGGGAAT 59.985 40.000 0.00 0.00 0.00 3.01
2204 2213 6.409704 TCAGATGGTTCTATTTCTCAACCTG 58.590 40.000 1.98 0.00 40.37 4.00
2220 2229 2.826488 ACCTGTCTGACTTGCTCCTAT 58.174 47.619 9.51 0.00 0.00 2.57
2221 2230 2.763448 ACCTGTCTGACTTGCTCCTATC 59.237 50.000 9.51 0.00 0.00 2.08
2232 2241 1.207089 TGCTCCTATCGAACCAAGGTG 59.793 52.381 0.00 0.00 0.00 4.00
2242 2251 3.328343 TCGAACCAAGGTGGAAAGGATTA 59.672 43.478 0.18 0.00 40.96 1.75
2287 2296 5.121811 CACTGATGAAGGATTCCTCGAAAT 58.878 41.667 5.48 0.00 46.93 2.17
2341 2350 4.757799 TTGCGAAAAAGAATGGATTCGA 57.242 36.364 10.54 0.00 45.45 3.71
2348 2357 7.322222 GCGAAAAAGAATGGATTCGATCTTATG 59.678 37.037 10.54 0.00 45.45 1.90
2472 2481 4.081972 TGAGAGAAAGAAGTGAGGAATCCG 60.082 45.833 0.00 0.00 0.00 4.18
2623 2632 8.783660 TCTTCTTCTGGAAATCCTAGCTATTA 57.216 34.615 0.00 0.00 36.82 0.98
2708 2717 1.116308 TCGTCCATAGGGCAAATCGA 58.884 50.000 0.00 0.00 0.00 3.59
2719 2728 7.970061 CCATAGGGCAAATCGAATATGTAATTG 59.030 37.037 0.00 0.00 0.00 2.32
2840 2849 6.691754 TGTATTATTTGGTCTACGTACCGA 57.308 37.500 3.13 0.00 42.91 4.69
2859 2868 4.863131 ACCGAAACTGATAACATTCGAGAC 59.137 41.667 9.51 0.00 45.45 3.36
2955 2966 2.303022 CCTCCACTAGCAGGTTTCTTCA 59.697 50.000 2.09 0.00 0.00 3.02
3100 3112 3.159472 ACGAAACCAAGAAATAACCCCC 58.841 45.455 0.00 0.00 0.00 5.40
3113 3125 1.762708 AACCCCCTATGTGCGAAATG 58.237 50.000 0.00 0.00 0.00 2.32
3139 3151 9.853177 GATAGAAGATCCCCTTTAAGATCAAAA 57.147 33.333 0.00 0.00 41.16 2.44
3183 3195 5.246883 TGCCTGTATGTGTGATAGCATCTAT 59.753 40.000 0.00 0.00 0.00 1.98
3208 3220 9.615660 ATTATACTAGGAATATCAGTGAACCCA 57.384 33.333 0.00 0.00 0.00 4.51
3264 3276 6.578023 AGCTGCTAGGTCTATTTCTTAGTTG 58.422 40.000 0.00 0.00 0.00 3.16
3284 3296 9.986157 TTAGTTGAAGATCCCTCTTACTAACTA 57.014 33.333 11.99 11.36 41.87 2.24
3375 3387 4.037923 TCATGGAATCGACTCGATCATCAA 59.962 41.667 14.25 3.77 46.30 2.57
3380 3392 6.983890 TGGAATCGACTCGATCATCAAATTAA 59.016 34.615 14.25 0.00 46.30 1.40
3494 3506 6.455360 AGAAATCCGTACGTCCTTACATTA 57.545 37.500 15.21 0.00 0.00 1.90
3591 3603 2.424956 CACCTCTTTGGGCTTCTATTGC 59.575 50.000 0.00 0.00 41.11 3.56
3594 3606 3.703052 CCTCTTTGGGCTTCTATTGCATT 59.297 43.478 0.00 0.00 0.00 3.56
3604 3616 6.406177 GGGCTTCTATTGCATTGAGAAATTGA 60.406 38.462 6.84 0.00 0.00 2.57
3677 3689 2.870411 GGTGTCCTACGGATAATGCAAC 59.130 50.000 0.00 0.00 32.73 4.17
3723 3735 3.131223 CAGGCCTATATGACCGATCGATT 59.869 47.826 18.66 2.17 0.00 3.34
3753 3765 2.816087 CCAAGACTCCACCTTTGTCATG 59.184 50.000 0.00 0.00 33.56 3.07
3838 3850 5.525378 GCCTTGATAGTGAAATGGTAGACAG 59.475 44.000 0.00 0.00 0.00 3.51
3931 3943 1.035139 ATTCAATGAGCATTCCCCGC 58.965 50.000 0.00 0.00 0.00 6.13
3955 3967 1.843851 AGTATTCCGGAAATCTGGGCA 59.156 47.619 23.08 0.00 42.72 5.36
3958 3970 1.037030 TTCCGGAAATCTGGGCATGC 61.037 55.000 16.28 9.90 42.72 4.06
3959 3971 2.717485 CGGAAATCTGGGCATGCG 59.283 61.111 12.44 0.00 0.00 4.73
3960 3972 2.414594 GGAAATCTGGGCATGCGC 59.585 61.111 26.55 26.55 37.44 6.09
3961 3973 2.123428 GGAAATCTGGGCATGCGCT 61.123 57.895 31.56 14.24 38.60 5.92
3962 3974 1.358046 GAAATCTGGGCATGCGCTC 59.642 57.895 31.56 18.55 40.02 5.03
3967 3979 2.111669 TGGGCATGCGCTCATAGG 59.888 61.111 31.56 0.00 46.28 2.57
3968 3980 2.427320 GGGCATGCGCTCATAGGA 59.573 61.111 26.07 0.00 39.07 2.94
3969 3981 1.002868 GGGCATGCGCTCATAGGAT 60.003 57.895 26.07 0.00 39.07 3.24
3970 3982 0.250234 GGGCATGCGCTCATAGGATA 59.750 55.000 26.07 0.00 39.07 2.59
4023 4035 7.974504 TCCCTGAGAAAAGTAGACAGTAAAAT 58.025 34.615 0.00 0.00 0.00 1.82
4126 4140 1.611673 CCTACTGCAAGGGTGGTCTTG 60.612 57.143 0.00 0.00 44.97 3.02
4223 4238 4.002906 TGCGACAGGAAAAAGTGACTAT 57.997 40.909 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.055588 ACTTTCATCGAATACGGATTTCCAT 58.944 36.000 0.00 0.00 40.21 3.41
106 107 1.561542 GAAAGATCTCCCTCCAAGCCA 59.438 52.381 0.00 0.00 0.00 4.75
227 230 0.594602 TACCTTGACGTGACGTGAGG 59.405 55.000 26.11 26.11 41.37 3.86
232 235 0.318360 TGCAGTACCTTGACGTGACG 60.318 55.000 2.24 2.24 0.00 4.35
285 288 7.332557 ACCACCATGTTAACTAATCGATTACA 58.667 34.615 13.85 12.76 0.00 2.41
337 341 8.226448 CGATAGAGAATTTGATAAGCCAATGAC 58.774 37.037 0.00 0.00 39.76 3.06
486 491 7.338710 AGATCCTATTTCAATCGGAACTTTCA 58.661 34.615 0.00 0.00 31.99 2.69
583 588 9.238368 TCGACTAATTGGGAACTTAATTTGAAT 57.762 29.630 0.00 0.00 0.00 2.57
599 604 3.488047 CCTTTGGCAGCATCGACTAATTG 60.488 47.826 0.00 0.00 0.00 2.32
607 612 1.377725 ACTCCCTTTGGCAGCATCG 60.378 57.895 0.00 0.00 0.00 3.84
632 637 3.500680 GTCACTTCCTTTTTGCGTATGGA 59.499 43.478 0.00 0.00 0.00 3.41
687 692 9.751542 TTATGTTCGTGGATTAACAAAAATGTT 57.248 25.926 0.00 0.00 38.95 2.71
715 720 6.266786 ACGGATCCATGTGTCTACATACATAA 59.733 38.462 13.41 0.00 45.53 1.90
931 936 8.894731 TCGATTTTTGAAATGGGATATTTACGA 58.105 29.630 0.00 0.00 0.00 3.43
964 969 4.290722 ACATCCAATCTCTGAAAAGTCCCT 59.709 41.667 0.00 0.00 0.00 4.20
1263 1268 7.849492 TGAAATTGTTCGTTTGGAAATTTCCCT 60.849 33.333 30.04 1.49 39.21 4.20
1367 1372 8.807948 AAAAGAAACTCTGCTATAGCCATTTA 57.192 30.769 21.84 1.82 41.18 1.40
1410 1415 6.014012 CCACATAAAAACTTTCCCCCTAGAA 58.986 40.000 0.00 0.00 0.00 2.10
1422 1427 6.569179 AATCGTTAGCACCACATAAAAACT 57.431 33.333 0.00 0.00 0.00 2.66
1479 1484 8.153221 TCCAGACAATAGGTAGGAACATAAAA 57.847 34.615 0.00 0.00 32.54 1.52
1554 1559 1.610379 GAGCTTGCCCCACCCATTT 60.610 57.895 0.00 0.00 0.00 2.32
1555 1560 2.037847 GAGCTTGCCCCACCCATT 59.962 61.111 0.00 0.00 0.00 3.16
1597 1602 3.267812 CCCCAGATGAACCATATAGCCAT 59.732 47.826 0.00 0.00 0.00 4.40
1631 1640 3.626028 AGACGGTTCACAATTTCTTGC 57.374 42.857 0.00 0.00 35.69 4.01
1692 1701 7.069986 AGTCCTACAGTGATGGATATAAGTGT 58.930 38.462 10.91 0.00 35.78 3.55
1784 1793 4.203654 AGAGGTAGGAATTTGTCGAACC 57.796 45.455 0.00 0.00 33.74 3.62
1818 1827 3.425162 TTTGCAAAACCCAAACACCTT 57.575 38.095 10.02 0.00 0.00 3.50
1847 1856 5.994054 GGATAGCATTTCTCTTCTGCATGTA 59.006 40.000 0.00 0.00 38.37 2.29
1878 1887 8.754991 TTTTGGTAAAAGTTCTATCTTGGTCA 57.245 30.769 0.00 0.00 0.00 4.02
2134 2143 7.125356 CCATGAGATGATCATCTTAGGGTGATA 59.875 40.741 35.45 18.10 46.01 2.15
2171 2180 9.690913 AGAAATAGAACCATCTGATTTGATTCA 57.309 29.630 0.00 0.00 37.10 2.57
2204 2213 3.440228 GTTCGATAGGAGCAAGTCAGAC 58.560 50.000 0.00 0.00 0.00 3.51
2220 2229 1.133363 TCCTTTCCACCTTGGTTCGA 58.867 50.000 0.00 0.00 39.03 3.71
2221 2230 2.200373 ATCCTTTCCACCTTGGTTCG 57.800 50.000 0.00 0.00 39.03 3.95
2287 2296 9.985730 TCGAAAAAGAACTACTAATCCTTAACA 57.014 29.630 0.00 0.00 0.00 2.41
2322 2331 5.162000 AGATCGAATCCATTCTTTTTCGC 57.838 39.130 0.00 0.00 40.43 4.70
2341 2350 3.579709 CTTCCTCGCGTATGCATAAGAT 58.420 45.455 21.79 0.00 42.97 2.40
2348 2357 2.059541 GATTACCTTCCTCGCGTATGC 58.940 52.381 5.77 0.00 37.91 3.14
2397 2406 3.877508 GCACGGCTCCTAAGTGATAAAAT 59.122 43.478 0.00 0.00 38.06 1.82
2436 2445 4.219070 TCTTTCTCTCATGCAAAACCATGG 59.781 41.667 11.19 11.19 42.19 3.66
2472 2481 1.673329 GGGGAGTCAGAGTCGAAAAGC 60.673 57.143 0.00 0.00 0.00 3.51
2590 2599 5.128335 GGATTTCCAGAAGAAGATGCCATTT 59.872 40.000 0.00 0.00 35.40 2.32
2623 2632 7.300658 AGGAGATTACCCAAAATCATGCTAAT 58.699 34.615 0.00 0.00 38.16 1.73
2640 2649 9.383519 CTTGTTTGAGTAATAGCAAGGAGATTA 57.616 33.333 0.00 0.00 32.28 1.75
2719 2728 6.817765 TGAGTCTCCAACAATTATTCCAAC 57.182 37.500 0.00 0.00 0.00 3.77
2789 2798 6.820656 GCAAGAAGAAGTTCCTAGATTCATGA 59.179 38.462 9.79 0.00 32.48 3.07
2807 2816 9.722056 GTAGACCAAATAATACAATGCAAGAAG 57.278 33.333 0.00 0.00 0.00 2.85
2809 2818 7.551262 ACGTAGACCAAATAATACAATGCAAGA 59.449 33.333 0.00 0.00 0.00 3.02
2840 2849 7.041721 TGCATAGTCTCGAATGTTATCAGTTT 58.958 34.615 0.00 0.00 0.00 2.66
2859 2868 6.366332 GGTCTTTCGTGTATAATCCTGCATAG 59.634 42.308 0.00 0.00 0.00 2.23
2955 2966 8.367660 TCCACACAGAATAGATAGAGTTTTCT 57.632 34.615 0.00 0.00 37.46 2.52
3100 3112 6.312426 GGGATCTTCTATCATTTCGCACATAG 59.688 42.308 0.00 0.00 0.00 2.23
3113 3125 9.853177 TTTTGATCTTAAAGGGGATCTTCTATC 57.147 33.333 0.00 0.00 39.09 2.08
3139 3151 7.093201 ACAGGCATACTCAATTTGATGGAATTT 60.093 33.333 0.00 0.00 0.00 1.82
3183 3195 9.442062 TTGGGTTCACTGATATTCCTAGTATAA 57.558 33.333 0.00 0.00 0.00 0.98
3189 3201 7.451731 AGAATTGGGTTCACTGATATTCCTA 57.548 36.000 0.00 0.00 39.39 2.94
3208 3220 5.163478 GGTATCCTGAGCAATTGCAAGAATT 60.163 40.000 30.89 10.32 45.16 2.17
3375 3387 8.248253 GGTTCGGTATGGAATGAACTTTTAATT 58.752 33.333 4.23 0.00 40.34 1.40
3380 3392 4.658063 TGGTTCGGTATGGAATGAACTTT 58.342 39.130 4.23 0.00 40.34 2.66
3677 3689 5.347342 AGTCAGACATCAAATAGCTTCGAG 58.653 41.667 2.66 0.00 0.00 4.04
3723 3735 4.168101 AGGTGGAGTCTTGGAGTATTTCA 58.832 43.478 0.00 0.00 0.00 2.69
3822 3834 1.899814 TCGCCTGTCTACCATTTCACT 59.100 47.619 0.00 0.00 0.00 3.41
3931 3943 4.130118 CCCAGATTTCCGGAATACTTCTG 58.870 47.826 25.27 25.27 35.78 3.02
3955 3967 5.445069 AGATAGAGTATCCTATGAGCGCAT 58.555 41.667 11.47 8.35 35.79 4.73
3958 3970 6.821160 TCAGAAGATAGAGTATCCTATGAGCG 59.179 42.308 0.00 0.00 35.79 5.03
3959 3971 7.283127 CCTCAGAAGATAGAGTATCCTATGAGC 59.717 44.444 10.00 0.00 37.17 4.26
3960 3972 8.328758 ACCTCAGAAGATAGAGTATCCTATGAG 58.671 40.741 9.02 9.02 37.66 2.90
3961 3973 8.225863 ACCTCAGAAGATAGAGTATCCTATGA 57.774 38.462 0.00 0.00 35.79 2.15
3962 3974 7.556275 GGACCTCAGAAGATAGAGTATCCTATG 59.444 44.444 0.00 0.00 34.66 2.23
3963 3975 7.464265 AGGACCTCAGAAGATAGAGTATCCTAT 59.536 40.741 9.49 0.00 40.77 2.57
3965 3977 5.615261 AGGACCTCAGAAGATAGAGTATCCT 59.385 44.000 0.00 0.00 39.17 3.24
3966 3978 5.887754 AGGACCTCAGAAGATAGAGTATCC 58.112 45.833 0.00 0.00 36.34 2.59
3967 3979 8.789762 GTTAAGGACCTCAGAAGATAGAGTATC 58.210 40.741 0.00 0.00 35.41 2.24
3968 3980 7.726738 GGTTAAGGACCTCAGAAGATAGAGTAT 59.273 40.741 0.00 0.00 45.55 2.12
3969 3981 7.061688 GGTTAAGGACCTCAGAAGATAGAGTA 58.938 42.308 0.00 0.00 45.55 2.59
3970 3982 5.894964 GGTTAAGGACCTCAGAAGATAGAGT 59.105 44.000 0.00 0.00 45.55 3.24
4047 4059 3.883489 GGGATTTTTAGGATCGTTCAGGG 59.117 47.826 0.00 0.00 0.00 4.45
4126 4140 4.074970 TGAGCAACCTCTTTTGGATTCTC 58.925 43.478 0.00 0.00 38.93 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.