Multiple sequence alignment - TraesCS7B01G090700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G090700 chr7B 100.000 7570 0 0 1 7570 104778425 104770856 0.000000e+00 13980.0
1 TraesCS7B01G090700 chr7B 95.833 72 3 0 2401 2472 104775990 104775919 4.800000e-22 117.0
2 TraesCS7B01G090700 chr7B 95.833 72 3 0 2436 2507 104776025 104775954 4.800000e-22 117.0
3 TraesCS7B01G090700 chr7B 98.000 50 1 0 3131 3180 32181072 32181121 3.760000e-13 87.9
4 TraesCS7B01G090700 chr7D 92.136 1971 108 26 5075 7013 139849139 139847184 0.000000e+00 2737.0
5 TraesCS7B01G090700 chr7D 93.357 1671 84 15 772 2436 139851954 139850305 0.000000e+00 2446.0
6 TraesCS7B01G090700 chr7D 88.221 1197 93 16 2472 3633 139850339 139849156 0.000000e+00 1386.0
7 TraesCS7B01G090700 chr7D 86.919 581 40 14 7009 7570 139841126 139840563 3.000000e-173 619.0
8 TraesCS7B01G090700 chr7D 80.380 158 19 7 1534 1685 139851278 139851127 8.030000e-20 110.0
9 TraesCS7B01G090700 chr7D 94.286 35 2 0 2437 2471 139850339 139850305 4.000000e-03 54.7
10 TraesCS7B01G090700 chr2B 96.828 1450 29 6 3647 5079 377787198 377788647 0.000000e+00 2407.0
11 TraesCS7B01G090700 chr7A 90.114 1750 109 33 5251 6969 139546878 139545162 0.000000e+00 2215.0
12 TraesCS7B01G090700 chr7A 90.011 1742 107 39 738 2436 139550471 139548754 0.000000e+00 2191.0
13 TraesCS7B01G090700 chr7A 89.000 900 61 18 2472 3337 139548788 139547893 0.000000e+00 1079.0
14 TraesCS7B01G090700 chr7A 91.845 699 56 1 1 699 609608083 609608780 0.000000e+00 974.0
15 TraesCS7B01G090700 chr7A 91.139 395 35 0 1 395 5625644 5625250 3.110000e-148 536.0
16 TraesCS7B01G090700 chr7A 95.500 200 9 0 500 699 5625166 5624967 3.410000e-83 320.0
17 TraesCS7B01G090700 chr7A 80.087 462 43 17 6922 7352 139544977 139544534 1.600000e-76 298.0
18 TraesCS7B01G090700 chr7A 88.400 250 22 2 1135 1384 619594254 619594496 2.070000e-75 294.0
19 TraesCS7B01G090700 chr7A 93.631 157 10 0 5090 5246 139547616 139547460 1.270000e-57 235.0
20 TraesCS7B01G090700 chr7A 91.579 95 7 1 351 445 5625158 5625251 6.160000e-26 130.0
21 TraesCS7B01G090700 chr7A 81.061 132 13 6 1534 1655 139549743 139549614 2.250000e-15 95.3
22 TraesCS7B01G090700 chr2D 96.361 1319 30 7 3647 4950 201443786 201445101 0.000000e+00 2154.0
23 TraesCS7B01G090700 chr2D 96.947 131 4 0 4949 5079 201445162 201445292 3.560000e-53 220.0
24 TraesCS7B01G090700 chr2D 92.771 83 6 0 3029 3111 512768302 512768220 3.710000e-23 121.0
25 TraesCS7B01G090700 chr2D 89.552 67 6 1 3114 3180 106630557 106630492 4.870000e-12 84.2
26 TraesCS7B01G090700 chr2A 92.837 1452 79 11 3647 5079 223719642 223721087 0.000000e+00 2082.0
27 TraesCS7B01G090700 chr2A 88.800 250 21 2 1135 1384 723202223 723202465 4.440000e-77 300.0
28 TraesCS7B01G090700 chr2A 87.600 250 24 2 1135 1384 717666972 717667214 4.470000e-72 283.0
29 TraesCS7B01G090700 chr1B 90.188 958 68 12 4140 5078 57776033 57776983 0.000000e+00 1225.0
30 TraesCS7B01G090700 chr1B 92.090 177 9 3 3977 4152 57775302 57775474 2.110000e-60 244.0
31 TraesCS7B01G090700 chr1B 79.121 182 35 3 520 700 589077904 589077725 1.030000e-23 122.0
32 TraesCS7B01G090700 chr1B 98.000 50 1 0 3131 3180 620706291 620706340 3.760000e-13 87.9
33 TraesCS7B01G090700 chr5B 92.725 701 43 6 1 699 575246454 575247148 0.000000e+00 1005.0
34 TraesCS7B01G090700 chr5A 91.989 699 56 0 1 699 606295433 606294735 0.000000e+00 981.0
35 TraesCS7B01G090700 chr5A 96.386 83 3 0 3029 3111 363848613 363848695 3.680000e-28 137.0
36 TraesCS7B01G090700 chr5A 89.333 75 7 1 7117 7191 304459348 304459421 8.090000e-15 93.5
37 TraesCS7B01G090700 chr3B 91.702 699 55 3 1 699 661558261 661557566 0.000000e+00 966.0
38 TraesCS7B01G090700 chr3B 92.473 93 6 1 3020 3111 550641364 550641456 1.710000e-26 132.0
39 TraesCS7B01G090700 chr3B 94.253 87 4 1 3025 3111 829791366 829791451 1.710000e-26 132.0
40 TraesCS7B01G090700 chr3B 79.775 178 33 3 508 684 675257995 675258170 7.970000e-25 126.0
41 TraesCS7B01G090700 chr4A 94.359 195 11 0 505 699 539147369 539147563 4.440000e-77 300.0
42 TraesCS7B01G090700 chr4A 88.843 242 20 2 1135 1376 96810657 96810891 2.670000e-74 291.0
43 TraesCS7B01G090700 chr4A 94.595 37 2 0 1714 1750 617639917 617639881 2.950000e-04 58.4
44 TraesCS7B01G090700 chr3A 88.800 250 21 2 1135 1384 453623227 453623469 4.440000e-77 300.0
45 TraesCS7B01G090700 chr3A 100.000 29 0 0 7162 7190 688973608 688973636 4.000000e-03 54.7
46 TraesCS7B01G090700 chr6A 88.000 150 16 2 2534 2682 540050207 540050059 7.810000e-40 176.0
47 TraesCS7B01G090700 chr6D 88.652 141 15 1 2542 2682 393658675 393658536 3.630000e-38 171.0
48 TraesCS7B01G090700 chr6B 87.943 141 16 1 2542 2682 588908216 588908077 1.690000e-36 165.0
49 TraesCS7B01G090700 chr6B 97.959 49 1 0 3132 3180 21942207 21942159 1.350000e-12 86.1
50 TraesCS7B01G090700 chr1D 95.402 87 4 0 3027 3113 86918503 86918589 1.020000e-28 139.0
51 TraesCS7B01G090700 chr1D 96.296 54 2 0 3132 3185 314437571 314437518 1.050000e-13 89.8
52 TraesCS7B01G090700 chr3D 93.548 93 5 1 3020 3111 422517603 422517695 3.680000e-28 137.0
53 TraesCS7B01G090700 chrUn 94.253 87 4 1 3025 3111 416761372 416761457 1.710000e-26 132.0
54 TraesCS7B01G090700 chr4B 83.871 124 16 4 2989 3111 18469738 18469858 1.730000e-21 115.0
55 TraesCS7B01G090700 chr4D 97.959 49 1 0 3132 3180 355714122 355714074 1.350000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G090700 chr7B 104770856 104778425 7569 True 4738.000000 13980 97.222000 1 7570 3 chr7B.!!$R1 7569
1 TraesCS7B01G090700 chr7D 139847184 139851954 4770 True 1346.740000 2737 89.676000 772 7013 5 chr7D.!!$R2 6241
2 TraesCS7B01G090700 chr7D 139840563 139841126 563 True 619.000000 619 86.919000 7009 7570 1 chr7D.!!$R1 561
3 TraesCS7B01G090700 chr2B 377787198 377788647 1449 False 2407.000000 2407 96.828000 3647 5079 1 chr2B.!!$F1 1432
4 TraesCS7B01G090700 chr7A 139544534 139550471 5937 True 1018.883333 2215 87.317333 738 7352 6 chr7A.!!$R2 6614
5 TraesCS7B01G090700 chr7A 609608083 609608780 697 False 974.000000 974 91.845000 1 699 1 chr7A.!!$F2 698
6 TraesCS7B01G090700 chr7A 5624967 5625644 677 True 428.000000 536 93.319500 1 699 2 chr7A.!!$R1 698
7 TraesCS7B01G090700 chr2D 201443786 201445292 1506 False 1187.000000 2154 96.654000 3647 5079 2 chr2D.!!$F1 1432
8 TraesCS7B01G090700 chr2A 223719642 223721087 1445 False 2082.000000 2082 92.837000 3647 5079 1 chr2A.!!$F1 1432
9 TraesCS7B01G090700 chr1B 57775302 57776983 1681 False 734.500000 1225 91.139000 3977 5078 2 chr1B.!!$F2 1101
10 TraesCS7B01G090700 chr5B 575246454 575247148 694 False 1005.000000 1005 92.725000 1 699 1 chr5B.!!$F1 698
11 TraesCS7B01G090700 chr5A 606294735 606295433 698 True 981.000000 981 91.989000 1 699 1 chr5A.!!$R1 698
12 TraesCS7B01G090700 chr3B 661557566 661558261 695 True 966.000000 966 91.702000 1 699 1 chr3B.!!$R1 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.253327 CCTACCTGGGCAGTTCTTCC 59.747 60.000 0.00 0.00 0.00 3.46 F
1938 1994 0.108138 ATGGTTGTCGTGCCTAGAGC 60.108 55.000 0.00 0.00 44.14 4.09 F
2953 3014 0.975135 AGAGGCGGATGGATGATCAG 59.025 55.000 0.09 0.00 31.91 2.90 F
3121 3199 0.166814 GCCTCTTGCTGCGTACAAAG 59.833 55.000 0.00 0.00 36.87 2.77 F
3186 3275 1.606313 GGGCTGCCCTTTACTGCAA 60.606 57.895 30.42 0.00 41.34 4.08 F
3308 3397 2.762887 GCCGTTAGTCCTAGGTAACCTT 59.237 50.000 9.08 0.00 34.61 3.50 F
4591 5278 2.839975 TCCACTGAAACATGCGTACAA 58.160 42.857 0.00 0.00 0.00 2.41 F
5423 6766 0.770499 TTGCCCTTGATCACTGGACA 59.230 50.000 12.82 6.39 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2254 0.031449 GCCAGCTATGTCTCTCGGAC 59.969 60.000 0.00 0.00 44.70 4.79 R
3082 3143 0.469331 TGTGTCCAGGACTCGAACCT 60.469 55.000 20.82 5.17 38.40 3.50 R
4573 5260 5.034152 ACTTTTTGTACGCATGTTTCAGTG 58.966 37.500 0.00 0.00 0.00 3.66 R
5101 5861 3.566322 CCGTCCAGGTTGTATTTTGAACA 59.434 43.478 0.00 0.00 34.51 3.18 R
5184 5944 7.148188 TGGCAATGACATTCTTATTCTTCTGTC 60.148 37.037 0.00 0.00 34.91 3.51 R
5294 6634 6.038161 CGCCTATGTTTCTTTTGATCATACCA 59.962 38.462 0.00 0.00 0.00 3.25 R
5994 7359 0.029300 CACACTGGTGCAGGAAAACG 59.971 55.000 0.17 0.00 38.37 3.60 R
7144 8761 0.035152 ATCGCCAGATGCAAAGACCA 60.035 50.000 0.00 0.00 41.33 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.164041 AACGTTATGGGCGCTATGGC 61.164 55.000 7.64 0.00 43.88 4.40
65 66 2.560105 AGCAAGGAGGAAAGCAATTCAC 59.440 45.455 4.87 0.00 39.98 3.18
80 81 1.257743 TTCACGAGGGAGTCTTCCAG 58.742 55.000 0.00 0.00 45.98 3.86
131 132 4.113354 CCAGGTTTATAAGTGAGCTCGAC 58.887 47.826 9.64 8.60 0.00 4.20
145 146 3.529533 AGCTCGACATGATCAAGGAAAG 58.470 45.455 0.00 0.00 0.00 2.62
167 168 2.320587 GCCACAGCCGAGACAACTG 61.321 63.158 0.00 0.00 37.45 3.16
271 272 0.472734 AGAGGAAGAGGTGGTGCTGT 60.473 55.000 0.00 0.00 0.00 4.40
320 321 0.253327 CCTACCTGGGCAGTTCTTCC 59.747 60.000 0.00 0.00 0.00 3.46
322 323 1.205460 TACCTGGGCAGTTCTTCCCC 61.205 60.000 5.18 2.42 41.92 4.81
330 331 0.889186 CAGTTCTTCCCCGGTTGTGG 60.889 60.000 0.00 0.00 0.00 4.17
412 413 2.794910 CGCATGACCTAAATCTACACCG 59.205 50.000 0.00 0.00 0.00 4.94
429 430 0.389817 CCGAGTGGTCATTGCTTCGA 60.390 55.000 0.00 0.00 0.00 3.71
584 589 3.274288 AGCTCATAAGTTAGCCAAGCAC 58.726 45.455 9.75 0.00 39.64 4.40
633 638 3.846256 TGGTATGGCCAATCCCATG 57.154 52.632 21.69 0.00 45.94 3.66
719 724 3.063510 CAGAAGTCTGGAATTGGCTCA 57.936 47.619 0.00 0.00 40.20 4.26
720 725 3.415212 CAGAAGTCTGGAATTGGCTCAA 58.585 45.455 0.00 0.00 40.20 3.02
721 726 3.822735 CAGAAGTCTGGAATTGGCTCAAA 59.177 43.478 0.00 0.00 40.20 2.69
722 727 4.279169 CAGAAGTCTGGAATTGGCTCAAAA 59.721 41.667 0.00 0.00 40.20 2.44
723 728 4.895297 AGAAGTCTGGAATTGGCTCAAAAA 59.105 37.500 0.00 0.00 0.00 1.94
753 758 0.759346 AAGTCTGGAACCTTCTGCGT 59.241 50.000 0.00 0.00 0.00 5.24
754 759 0.318762 AGTCTGGAACCTTCTGCGTC 59.681 55.000 0.00 0.00 0.00 5.19
759 764 4.699522 AACCTTCTGCGTCGGCCC 62.700 66.667 0.00 0.00 38.85 5.80
767 772 4.832608 GCGTCGGCCCCTACCAAG 62.833 72.222 0.00 0.00 0.00 3.61
848 854 3.133183 AGAAAAGAGGCCGAAGAGTATCC 59.867 47.826 0.00 0.00 33.66 2.59
909 918 6.217294 AGAAAACTAGAGAAAAGACGAGTGG 58.783 40.000 0.00 0.00 0.00 4.00
1019 1031 5.062528 CACTAGGGTAGTAGTAGGTGCTAC 58.937 50.000 0.00 0.00 42.17 3.58
1057 1083 2.283894 TCGAGGAAGCAGCAGGGA 60.284 61.111 0.00 0.00 0.00 4.20
1207 1239 0.183492 TTGCTCTGGTTCAAGGCTGT 59.817 50.000 0.00 0.00 0.00 4.40
1208 1240 0.535780 TGCTCTGGTTCAAGGCTGTG 60.536 55.000 0.00 0.00 0.00 3.66
1275 1307 1.577328 ATCGTTGCTGCGGTTTCCTG 61.577 55.000 0.00 0.00 0.00 3.86
1276 1308 2.644992 GTTGCTGCGGTTTCCTGG 59.355 61.111 0.00 0.00 0.00 4.45
1282 1314 1.507141 CTGCGGTTTCCTGGTGTCAC 61.507 60.000 0.00 0.00 0.00 3.67
1308 1340 0.727398 GCTGTTCATGTCGTTAGCCC 59.273 55.000 0.00 0.00 0.00 5.19
1350 1388 1.880340 GGGCGAAGATGTGCGAGAG 60.880 63.158 0.00 0.00 0.00 3.20
1379 1417 0.666913 GGTCGATTCGTAGGCTGCTA 59.333 55.000 5.89 0.00 0.00 3.49
1471 1515 3.882888 TCAAAGCCCTAGTGTCAAAGTTG 59.117 43.478 0.00 0.00 0.00 3.16
1504 1548 3.119884 TCCTGTTTGCTTGTATTGATGCG 60.120 43.478 0.00 0.00 0.00 4.73
1612 1668 0.907486 TCTCTGAGAGTGGCAATGGG 59.093 55.000 9.62 0.00 0.00 4.00
1619 1675 4.464008 TGAGAGTGGCAATGGGAAATATC 58.536 43.478 0.00 0.00 0.00 1.63
1685 1741 4.272991 GCTATGTTGATGCTTTCTCTGAGG 59.727 45.833 4.59 0.00 0.00 3.86
1695 1751 3.369892 GCTTTCTCTGAGGGCATCAAGTA 60.370 47.826 2.54 0.00 37.52 2.24
1868 1924 7.256583 GGGGGTAATAGGAAGTTAAGGACATAG 60.257 44.444 0.00 0.00 0.00 2.23
1869 1925 7.291885 GGGGTAATAGGAAGTTAAGGACATAGT 59.708 40.741 0.00 0.00 0.00 2.12
1870 1926 9.372189 GGGTAATAGGAAGTTAAGGACATAGTA 57.628 37.037 0.00 0.00 0.00 1.82
1938 1994 0.108138 ATGGTTGTCGTGCCTAGAGC 60.108 55.000 0.00 0.00 44.14 4.09
1983 2039 2.620251 TGAAGAGAGTGGTTGGTGTG 57.380 50.000 0.00 0.00 0.00 3.82
2030 2086 5.947228 TCTACAAACTCTGCTCAATTTGG 57.053 39.130 0.00 0.00 36.55 3.28
2062 2118 2.146342 ACTGTGATGTGCTGCTACAAC 58.854 47.619 0.00 3.65 33.69 3.32
2151 2207 6.894339 ACAATGGGGTTAACTGTTAAGAAG 57.106 37.500 12.97 3.19 0.00 2.85
2404 2460 9.494271 AGTATTACCATTATGCTCAGTTACATG 57.506 33.333 0.00 0.00 0.00 3.21
2405 2461 9.489084 GTATTACCATTATGCTCAGTTACATGA 57.511 33.333 0.00 0.00 0.00 3.07
2407 2463 8.978874 TTACCATTATGCTCAGTTACATGATT 57.021 30.769 0.00 0.00 0.00 2.57
2408 2464 7.502120 ACCATTATGCTCAGTTACATGATTC 57.498 36.000 0.00 0.00 0.00 2.52
2409 2465 7.056006 ACCATTATGCTCAGTTACATGATTCA 58.944 34.615 0.00 0.00 0.00 2.57
2410 2466 7.012704 ACCATTATGCTCAGTTACATGATTCAC 59.987 37.037 0.00 0.00 0.00 3.18
2411 2467 7.228108 CCATTATGCTCAGTTACATGATTCACT 59.772 37.037 0.00 0.00 0.00 3.41
2412 2468 8.618677 CATTATGCTCAGTTACATGATTCACTT 58.381 33.333 0.00 0.00 0.00 3.16
2413 2469 9.836864 ATTATGCTCAGTTACATGATTCACTTA 57.163 29.630 0.00 0.00 0.00 2.24
2414 2470 6.968131 TGCTCAGTTACATGATTCACTTAC 57.032 37.500 0.00 0.00 0.00 2.34
2415 2471 5.874810 TGCTCAGTTACATGATTCACTTACC 59.125 40.000 0.00 0.00 0.00 2.85
2416 2472 6.109359 GCTCAGTTACATGATTCACTTACCT 58.891 40.000 0.00 0.00 0.00 3.08
2417 2473 6.256757 GCTCAGTTACATGATTCACTTACCTC 59.743 42.308 0.00 0.00 0.00 3.85
2418 2474 6.330278 TCAGTTACATGATTCACTTACCTCG 58.670 40.000 0.00 0.00 0.00 4.63
2419 2475 6.071560 TCAGTTACATGATTCACTTACCTCGT 60.072 38.462 0.00 0.00 0.00 4.18
2420 2476 6.590292 CAGTTACATGATTCACTTACCTCGTT 59.410 38.462 0.00 0.00 0.00 3.85
2421 2477 7.117812 CAGTTACATGATTCACTTACCTCGTTT 59.882 37.037 0.00 0.00 0.00 3.60
2422 2478 7.331193 AGTTACATGATTCACTTACCTCGTTTC 59.669 37.037 0.00 0.00 0.00 2.78
2423 2479 5.547465 ACATGATTCACTTACCTCGTTTCA 58.453 37.500 0.00 0.00 0.00 2.69
2424 2480 6.173339 ACATGATTCACTTACCTCGTTTCAT 58.827 36.000 0.00 0.00 0.00 2.57
2425 2481 6.313905 ACATGATTCACTTACCTCGTTTCATC 59.686 38.462 0.00 0.00 0.00 2.92
2426 2482 6.037786 TGATTCACTTACCTCGTTTCATCT 57.962 37.500 0.00 0.00 0.00 2.90
2427 2483 6.464222 TGATTCACTTACCTCGTTTCATCTT 58.536 36.000 0.00 0.00 0.00 2.40
2428 2484 6.368791 TGATTCACTTACCTCGTTTCATCTTG 59.631 38.462 0.00 0.00 0.00 3.02
2429 2485 5.462530 TCACTTACCTCGTTTCATCTTGA 57.537 39.130 0.00 0.00 0.00 3.02
2430 2486 6.037786 TCACTTACCTCGTTTCATCTTGAT 57.962 37.500 0.00 0.00 0.00 2.57
2431 2487 7.165460 TCACTTACCTCGTTTCATCTTGATA 57.835 36.000 0.00 0.00 0.00 2.15
2432 2488 7.033791 TCACTTACCTCGTTTCATCTTGATAC 58.966 38.462 0.00 0.00 0.00 2.24
2433 2489 7.036220 CACTTACCTCGTTTCATCTTGATACT 58.964 38.462 0.00 0.00 0.00 2.12
2434 2490 7.009631 CACTTACCTCGTTTCATCTTGATACTG 59.990 40.741 0.00 0.00 0.00 2.74
2435 2491 5.661056 ACCTCGTTTCATCTTGATACTGA 57.339 39.130 0.00 0.00 0.00 3.41
2436 2492 5.411781 ACCTCGTTTCATCTTGATACTGAC 58.588 41.667 0.00 0.00 0.00 3.51
2437 2493 5.047306 ACCTCGTTTCATCTTGATACTGACA 60.047 40.000 0.00 0.00 0.00 3.58
2438 2494 6.045318 CCTCGTTTCATCTTGATACTGACAT 58.955 40.000 0.00 0.00 0.00 3.06
2439 2495 6.019237 CCTCGTTTCATCTTGATACTGACATG 60.019 42.308 0.00 0.00 0.00 3.21
2440 2496 6.630071 TCGTTTCATCTTGATACTGACATGA 58.370 36.000 0.00 0.00 0.00 3.07
2441 2497 7.267857 TCGTTTCATCTTGATACTGACATGAT 58.732 34.615 0.00 0.00 34.19 2.45
2442 2498 7.765819 TCGTTTCATCTTGATACTGACATGATT 59.234 33.333 0.00 0.00 32.49 2.57
2443 2499 8.060679 CGTTTCATCTTGATACTGACATGATTC 58.939 37.037 0.00 0.00 32.49 2.52
2444 2500 8.886719 GTTTCATCTTGATACTGACATGATTCA 58.113 33.333 0.00 0.00 32.49 2.57
2445 2501 8.429493 TTCATCTTGATACTGACATGATTCAC 57.571 34.615 0.00 0.00 32.49 3.18
2446 2502 7.789026 TCATCTTGATACTGACATGATTCACT 58.211 34.615 0.00 0.00 32.49 3.41
2447 2503 8.262933 TCATCTTGATACTGACATGATTCACTT 58.737 33.333 0.00 0.00 32.49 3.16
2448 2504 9.538508 CATCTTGATACTGACATGATTCACTTA 57.461 33.333 0.00 0.00 32.49 2.24
2449 2505 8.932945 TCTTGATACTGACATGATTCACTTAC 57.067 34.615 0.00 0.00 0.00 2.34
2450 2506 7.981789 TCTTGATACTGACATGATTCACTTACC 59.018 37.037 0.00 0.00 0.00 2.85
2451 2507 7.423844 TGATACTGACATGATTCACTTACCT 57.576 36.000 0.00 0.00 0.00 3.08
2452 2508 7.492524 TGATACTGACATGATTCACTTACCTC 58.507 38.462 0.00 0.00 0.00 3.85
2453 2509 4.748892 ACTGACATGATTCACTTACCTCG 58.251 43.478 0.00 0.00 0.00 4.63
2454 2510 4.220821 ACTGACATGATTCACTTACCTCGT 59.779 41.667 0.00 0.00 0.00 4.18
2455 2511 5.147330 TGACATGATTCACTTACCTCGTT 57.853 39.130 0.00 0.00 0.00 3.85
2456 2512 5.547465 TGACATGATTCACTTACCTCGTTT 58.453 37.500 0.00 0.00 0.00 3.60
2457 2513 5.637810 TGACATGATTCACTTACCTCGTTTC 59.362 40.000 0.00 0.00 0.00 2.78
2458 2514 5.547465 ACATGATTCACTTACCTCGTTTCA 58.453 37.500 0.00 0.00 0.00 2.69
2459 2515 6.173339 ACATGATTCACTTACCTCGTTTCAT 58.827 36.000 0.00 0.00 0.00 2.57
2460 2516 6.313905 ACATGATTCACTTACCTCGTTTCATC 59.686 38.462 0.00 0.00 0.00 2.92
2461 2517 6.037786 TGATTCACTTACCTCGTTTCATCT 57.962 37.500 0.00 0.00 0.00 2.90
2462 2518 6.464222 TGATTCACTTACCTCGTTTCATCTT 58.536 36.000 0.00 0.00 0.00 2.40
2463 2519 6.368791 TGATTCACTTACCTCGTTTCATCTTG 59.631 38.462 0.00 0.00 0.00 3.02
2464 2520 5.462530 TCACTTACCTCGTTTCATCTTGA 57.537 39.130 0.00 0.00 0.00 3.02
2465 2521 6.037786 TCACTTACCTCGTTTCATCTTGAT 57.962 37.500 0.00 0.00 0.00 2.57
2466 2522 7.165460 TCACTTACCTCGTTTCATCTTGATA 57.835 36.000 0.00 0.00 0.00 2.15
2467 2523 7.033791 TCACTTACCTCGTTTCATCTTGATAC 58.966 38.462 0.00 0.00 0.00 2.24
2468 2524 6.255887 CACTTACCTCGTTTCATCTTGATACC 59.744 42.308 0.00 0.00 0.00 2.73
2469 2525 3.782046 ACCTCGTTTCATCTTGATACCG 58.218 45.455 0.00 0.00 0.00 4.02
2470 2526 3.446161 ACCTCGTTTCATCTTGATACCGA 59.554 43.478 0.00 0.00 0.00 4.69
2488 2544 3.513912 ACCGACATGATTCACTTACCTCA 59.486 43.478 0.00 0.00 0.00 3.86
2499 2555 8.102676 TGATTCACTTACCTCATTTCATCTTGA 58.897 33.333 0.00 0.00 0.00 3.02
2506 2562 8.948631 TTACCTCATTTCATCTTGATACTGAC 57.051 34.615 0.00 0.00 0.00 3.51
2545 2601 6.385649 TTCCACATTTTCTCTGTTAACACC 57.614 37.500 3.59 0.00 0.00 4.16
2560 2616 1.094785 ACACCGTTTGCAGATATGCC 58.905 50.000 10.32 0.00 0.00 4.40
2605 2661 7.280428 ACAAAATCTCAAGTAGATGATCAGCAG 59.720 37.037 14.38 0.34 44.56 4.24
2760 2819 3.131933 CCCAAAATGTTCAGTGTTGGTGA 59.868 43.478 7.06 0.00 37.60 4.02
2794 2855 9.057089 CAATTTCTAGTTTCCAGTAGTGAAAGT 57.943 33.333 0.00 4.07 38.54 2.66
2802 2863 7.608761 AGTTTCCAGTAGTGAAAGTTGTAACAA 59.391 33.333 0.00 0.00 32.79 2.83
2804 2865 7.490962 TCCAGTAGTGAAAGTTGTAACAATG 57.509 36.000 0.00 0.00 0.00 2.82
2821 2882 6.874288 AACAATGAAAGACCAAGAGAAGAG 57.126 37.500 0.00 0.00 0.00 2.85
2826 2887 4.408921 TGAAAGACCAAGAGAAGAGTTGGA 59.591 41.667 8.08 0.00 45.35 3.53
2844 2905 2.306805 TGGACCTGATTCAATGTGCTCT 59.693 45.455 8.34 0.00 0.00 4.09
2867 2928 8.871686 TCTCTTTTATGCTTTTCTTGGTTTTC 57.128 30.769 0.00 0.00 0.00 2.29
2944 3005 1.442526 GATGCACCAAGAGGCGGATG 61.443 60.000 0.00 0.00 39.06 3.51
2953 3014 0.975135 AGAGGCGGATGGATGATCAG 59.025 55.000 0.09 0.00 31.91 2.90
2959 3020 3.494048 GGCGGATGGATGATCAGATATCC 60.494 52.174 18.21 18.21 42.56 2.59
2964 3025 6.127111 CGGATGGATGATCAGATATCCTTTCT 60.127 42.308 22.35 5.89 42.67 2.52
2993 3054 9.771534 AGAGAGAAATTATAGGACTGCAATAAC 57.228 33.333 0.00 0.00 0.00 1.89
2997 3058 7.985184 AGAAATTATAGGACTGCAATAACGTCA 59.015 33.333 5.52 0.00 0.00 4.35
2999 3060 8.677148 AATTATAGGACTGCAATAACGTCATT 57.323 30.769 5.52 0.00 0.00 2.57
3000 3061 8.677148 ATTATAGGACTGCAATAACGTCATTT 57.323 30.769 5.52 0.00 0.00 2.32
3035 3096 3.825328 CAATCAGACTAATGGAAGGGGG 58.175 50.000 0.00 0.00 0.00 5.40
3121 3199 0.166814 GCCTCTTGCTGCGTACAAAG 59.833 55.000 0.00 0.00 36.87 2.77
3183 3272 2.438434 CCGGGCTGCCCTTTACTG 60.438 66.667 33.39 17.58 42.67 2.74
3184 3273 3.134127 CGGGCTGCCCTTTACTGC 61.134 66.667 33.39 6.69 42.67 4.40
3186 3275 1.606313 GGGCTGCCCTTTACTGCAA 60.606 57.895 30.42 0.00 41.34 4.08
3206 3295 7.069085 ACTGCAATCAAACTAATATGAGCCATT 59.931 33.333 0.00 0.00 0.00 3.16
3226 3315 6.616947 CCATTAATCTTGTTACAAGGCGAAA 58.383 36.000 22.82 13.27 0.00 3.46
3227 3316 7.087639 CCATTAATCTTGTTACAAGGCGAAAA 58.912 34.615 22.82 11.80 0.00 2.29
3294 3383 8.142994 ACAATCAAACTAATATGAGCCGTTAG 57.857 34.615 0.00 0.00 0.00 2.34
3300 3389 6.821031 ACTAATATGAGCCGTTAGTCCTAG 57.179 41.667 0.00 0.00 34.50 3.02
3308 3397 2.762887 GCCGTTAGTCCTAGGTAACCTT 59.237 50.000 9.08 0.00 34.61 3.50
3333 3422 9.886337 TTATGGTTCATACCTACTATTACCTCA 57.114 33.333 0.00 0.00 45.27 3.86
3384 3473 4.199310 TGCATAAGGTTGCCATAGACTTC 58.801 43.478 0.00 0.00 42.06 3.01
3385 3474 4.199310 GCATAAGGTTGCCATAGACTTCA 58.801 43.478 0.00 0.00 36.60 3.02
3388 3477 4.307032 AAGGTTGCCATAGACTTCACAT 57.693 40.909 0.00 0.00 0.00 3.21
3391 3480 3.378427 GGTTGCCATAGACTTCACATTCC 59.622 47.826 0.00 0.00 0.00 3.01
3392 3481 2.905075 TGCCATAGACTTCACATTCCG 58.095 47.619 0.00 0.00 0.00 4.30
3398 3487 6.704493 GCCATAGACTTCACATTCCGTATAAA 59.296 38.462 0.00 0.00 0.00 1.40
3405 3494 7.335627 ACTTCACATTCCGTATAAATCTGGAA 58.664 34.615 0.00 0.00 44.06 3.53
3411 3500 7.998964 ACATTCCGTATAAATCTGGAAGGAAAT 59.001 33.333 10.97 0.00 43.09 2.17
3423 3512 8.915057 ATCTGGAAGGAAATGATACATAACTG 57.085 34.615 0.00 0.00 0.00 3.16
3434 3523 5.988287 TGATACATAACTGAAGCACCATGA 58.012 37.500 0.00 0.00 0.00 3.07
3517 3607 5.540719 GGTATCCTTGCTAGTATCTCCAGTT 59.459 44.000 0.00 0.00 0.00 3.16
3551 3641 9.853555 TTTACAATTTAGTTTACATGGCATCAG 57.146 29.630 0.00 0.00 0.00 2.90
3579 3669 8.106247 ACACAACCATTTGATACTTACGAAAT 57.894 30.769 0.00 0.00 36.48 2.17
3585 3675 9.840427 ACCATTTGATACTTACGAAATTTTGAG 57.160 29.630 12.54 2.78 0.00 3.02
3586 3676 9.840427 CCATTTGATACTTACGAAATTTTGAGT 57.160 29.630 12.54 8.44 0.00 3.41
3607 3699 8.195165 TGAGTACGTAGGTAGGTAGTATACAT 57.805 38.462 5.50 0.00 45.43 2.29
3610 3702 8.310382 AGTACGTAGGTAGGTAGTATACATCTG 58.690 40.741 5.50 0.00 45.43 2.90
3735 3827 4.235079 TGCAACAGTTATAAGCCCATCT 57.765 40.909 0.00 0.00 0.00 2.90
4024 4124 7.851387 TCATCAGATATTACTAGTAGAGGCG 57.149 40.000 3.59 0.00 0.00 5.52
4550 5237 7.010552 CCGATAGAAACTGTCCACTTGATAAAG 59.989 40.741 0.00 0.00 39.76 1.85
4591 5278 2.839975 TCCACTGAAACATGCGTACAA 58.160 42.857 0.00 0.00 0.00 2.41
4990 5744 3.501445 AGAGTTCTGATTCTTGCAAGTGC 59.499 43.478 25.19 15.70 42.50 4.40
5023 5777 8.499162 CAAAACATTACAACAAAGAACAACCAA 58.501 29.630 0.00 0.00 0.00 3.67
5101 5861 3.558746 GGGCTAGATGTGCTATGCTTCAT 60.559 47.826 0.00 0.00 0.00 2.57
5204 5964 6.373005 TGGGACAGAAGAATAAGAATGTCA 57.627 37.500 5.60 0.00 38.99 3.58
5206 5966 7.405292 TGGGACAGAAGAATAAGAATGTCATT 58.595 34.615 0.00 0.00 38.99 2.57
5318 6658 7.333528 TGGTATGATCAAAAGAAACATAGGC 57.666 36.000 0.00 0.00 0.00 3.93
5336 6676 8.736751 ACATAGGCGTGTTTTTACATTAAAAG 57.263 30.769 0.00 0.00 38.70 2.27
5376 6717 3.764885 ACGCATCAGAAATAACTTGCC 57.235 42.857 0.00 0.00 0.00 4.52
5377 6718 3.081061 ACGCATCAGAAATAACTTGCCA 58.919 40.909 0.00 0.00 0.00 4.92
5378 6719 3.696051 ACGCATCAGAAATAACTTGCCAT 59.304 39.130 0.00 0.00 0.00 4.40
5380 6721 5.356751 ACGCATCAGAAATAACTTGCCATAA 59.643 36.000 0.00 0.00 0.00 1.90
5381 6722 5.911280 CGCATCAGAAATAACTTGCCATAAG 59.089 40.000 0.00 0.00 0.00 1.73
5382 6723 6.458751 CGCATCAGAAATAACTTGCCATAAGT 60.459 38.462 0.00 0.00 0.00 2.24
5417 6760 2.450476 ACCAGAATTGCCCTTGATCAC 58.550 47.619 0.00 0.00 0.00 3.06
5423 6766 0.770499 TTGCCCTTGATCACTGGACA 59.230 50.000 12.82 6.39 0.00 4.02
5424 6767 0.994247 TGCCCTTGATCACTGGACAT 59.006 50.000 12.82 0.00 0.00 3.06
5429 6772 4.338879 CCCTTGATCACTGGACATCTTTT 58.661 43.478 13.83 0.00 0.00 2.27
5437 6780 9.513906 TGATCACTGGACATCTTTTGTTAAATA 57.486 29.630 0.00 0.00 39.18 1.40
5438 6781 9.774742 GATCACTGGACATCTTTTGTTAAATAC 57.225 33.333 0.00 0.00 39.18 1.89
5461 6804 2.432510 CCTCTTACCTCTACAAGCTGGG 59.567 54.545 0.00 0.00 0.00 4.45
5464 6807 1.568504 TACCTCTACAAGCTGGGGTG 58.431 55.000 3.59 0.00 0.00 4.61
5470 6813 3.450904 TCTACAAGCTGGGGTGTCTTAT 58.549 45.455 0.00 0.00 0.00 1.73
5471 6814 4.616553 TCTACAAGCTGGGGTGTCTTATA 58.383 43.478 0.00 0.00 0.00 0.98
5472 6815 3.629142 ACAAGCTGGGGTGTCTTATAC 57.371 47.619 0.00 0.00 0.00 1.47
5475 6818 4.406003 ACAAGCTGGGGTGTCTTATACTAG 59.594 45.833 0.00 0.00 0.00 2.57
5569 6914 2.751166 TCAACTGCTGGCTAGTCTTC 57.249 50.000 0.00 0.00 0.00 2.87
5572 6917 1.268283 ACTGCTGGCTAGTCTTCCCC 61.268 60.000 0.00 0.00 0.00 4.81
5599 6944 6.528537 TTCAATGGTGCTGCTTATGTTTAT 57.471 33.333 0.00 0.00 0.00 1.40
5668 7013 1.201424 GGTACGTCCCAAGGAAGGAT 58.799 55.000 0.00 0.00 35.56 3.24
5681 7026 6.374613 CCCAAGGAAGGATAAGTTGAGTAAAC 59.625 42.308 0.00 0.00 39.24 2.01
5689 7034 8.095452 AGGATAAGTTGAGTAAACCTGATGAT 57.905 34.615 0.00 0.00 39.85 2.45
5704 7049 1.067669 GATGATGTACTCTCAGCCGCA 59.932 52.381 0.00 0.00 0.00 5.69
5774 7119 2.301870 AGCAAGGTATTCCTGTTGTCGA 59.698 45.455 0.00 0.00 44.35 4.20
5870 7215 7.750229 ATGTCATTTATGTGATATGTGTCCC 57.250 36.000 0.00 0.00 30.09 4.46
5872 7217 7.345691 TGTCATTTATGTGATATGTGTCCCTT 58.654 34.615 0.00 0.00 0.00 3.95
5873 7218 7.498900 TGTCATTTATGTGATATGTGTCCCTTC 59.501 37.037 0.00 0.00 0.00 3.46
5879 7224 5.674525 TGTGATATGTGTCCCTTCTTCATC 58.325 41.667 0.00 0.00 0.00 2.92
5883 7228 4.762289 ATGTGTCCCTTCTTCATCCTAC 57.238 45.455 0.00 0.00 0.00 3.18
5928 7293 6.554334 TCAAGCCATTTTTACTGTAGTGAC 57.446 37.500 0.00 0.00 0.00 3.67
5958 7323 2.636893 ACTGGCTGATTGACTCACTCTT 59.363 45.455 0.00 0.00 0.00 2.85
5959 7324 3.260740 CTGGCTGATTGACTCACTCTTC 58.739 50.000 0.00 0.00 0.00 2.87
5990 7355 5.105837 TGCTTGCATTGCATAGTATTGACAA 60.106 36.000 12.95 0.00 38.76 3.18
5993 7358 3.970610 GCATTGCATAGTATTGACAAGCG 59.029 43.478 3.15 0.00 0.00 4.68
5994 7359 3.673746 TTGCATAGTATTGACAAGCGC 57.326 42.857 0.00 0.00 0.00 5.92
6001 7366 2.095919 AGTATTGACAAGCGCGTTTTCC 60.096 45.455 5.12 1.11 0.00 3.13
6010 7375 2.542907 CGCGTTTTCCTGCACCAGT 61.543 57.895 0.00 0.00 0.00 4.00
6038 7403 6.744537 GCTCAATAGTTCAATTGCTACACTTG 59.255 38.462 0.00 8.91 36.89 3.16
6068 7436 8.803397 AATTGTACTTCCCCTCTATGTTTTAC 57.197 34.615 0.00 0.00 0.00 2.01
6074 7442 3.784202 TCCCCTCTATGTTTTACCTTCCC 59.216 47.826 0.00 0.00 0.00 3.97
6149 7517 4.307432 CTTCAAAGTTTAGGAGCACGAGA 58.693 43.478 0.00 0.00 0.00 4.04
6227 7595 6.029492 TCATGGGGTGAAAATCCATTCTAT 57.971 37.500 0.00 0.00 39.07 1.98
6405 7773 2.996168 AAGAGCTTTCCACGCACGCT 62.996 55.000 0.00 0.00 0.00 5.07
6492 7860 5.652014 TGAATTCTTGTAAATAGGTGCCAGG 59.348 40.000 7.05 0.00 0.00 4.45
6493 7861 3.644966 TCTTGTAAATAGGTGCCAGGG 57.355 47.619 0.00 0.00 0.00 4.45
6592 7960 1.186200 ACTAGACATCGCCTGCTTCA 58.814 50.000 0.00 0.00 0.00 3.02
6596 7964 1.160137 GACATCGCCTGCTTCAAACT 58.840 50.000 0.00 0.00 0.00 2.66
6620 7988 3.064207 GCGATTTCCTGTGTGTTAGTGA 58.936 45.455 0.00 0.00 0.00 3.41
6656 8024 4.904154 CGTTTCAAACATTCCGAAGACTTC 59.096 41.667 5.03 5.03 0.00 3.01
6657 8025 5.212934 GTTTCAAACATTCCGAAGACTTCC 58.787 41.667 9.63 0.00 0.00 3.46
6861 8230 4.082300 TGTGTGTGCAATATTTGGGTCATC 60.082 41.667 0.00 0.00 0.00 2.92
6867 8236 6.817641 TGTGCAATATTTGGGTCATCAAATTC 59.182 34.615 7.91 0.00 42.63 2.17
6869 8238 7.550196 GTGCAATATTTGGGTCATCAAATTCTT 59.450 33.333 7.91 1.74 42.63 2.52
6871 8240 9.598517 GCAATATTTGGGTCATCAAATTCTTAA 57.401 29.630 7.91 0.00 42.63 1.85
6875 8244 6.588719 TTGGGTCATCAAATTCTTAAGTGG 57.411 37.500 1.63 0.00 0.00 4.00
6921 8290 3.119602 ACAATACAAAGCGCGTAGAGAGA 60.120 43.478 8.43 0.00 0.00 3.10
6925 8294 0.171455 AAAGCGCGTAGAGAGAGGTG 59.829 55.000 8.43 0.00 0.00 4.00
6926 8295 1.658686 AAGCGCGTAGAGAGAGGTGG 61.659 60.000 8.43 0.00 0.00 4.61
6989 8593 9.890629 TTTATTATAACACTGTCAGATTGAGCT 57.109 29.630 6.91 0.00 0.00 4.09
7084 8688 7.054751 AGTTGAGGTTTATATTCCTAAGCACC 58.945 38.462 0.00 0.00 33.83 5.01
7113 8725 0.111061 TGTGGTTTGCTCTGCCTCAT 59.889 50.000 0.00 0.00 0.00 2.90
7114 8726 1.251251 GTGGTTTGCTCTGCCTCATT 58.749 50.000 0.00 0.00 0.00 2.57
7115 8727 2.224744 TGTGGTTTGCTCTGCCTCATTA 60.225 45.455 0.00 0.00 0.00 1.90
7117 8729 4.199310 GTGGTTTGCTCTGCCTCATTATA 58.801 43.478 0.00 0.00 0.00 0.98
7119 8731 5.997746 GTGGTTTGCTCTGCCTCATTATATA 59.002 40.000 0.00 0.00 0.00 0.86
7143 8760 2.826674 TTGAAATGGAGGATGACCCC 57.173 50.000 0.00 0.00 36.73 4.95
7144 8761 1.985622 TGAAATGGAGGATGACCCCT 58.014 50.000 0.00 0.00 39.77 4.79
7145 8762 1.565759 TGAAATGGAGGATGACCCCTG 59.434 52.381 0.00 0.00 36.49 4.45
7146 8763 0.929244 AAATGGAGGATGACCCCTGG 59.071 55.000 0.00 0.00 36.49 4.45
7147 8764 0.253820 AATGGAGGATGACCCCTGGT 60.254 55.000 0.00 0.00 39.44 4.00
7157 8774 2.479562 ACCCCTGGTCTTTGCATCT 58.520 52.632 0.00 0.00 0.00 2.90
7158 8775 0.038744 ACCCCTGGTCTTTGCATCTG 59.961 55.000 0.00 0.00 0.00 2.90
7159 8776 0.682209 CCCCTGGTCTTTGCATCTGG 60.682 60.000 0.00 0.00 0.00 3.86
7236 8858 7.647318 GCAATTAAACAAATTTTGGTGGGAAAG 59.353 33.333 13.42 0.00 35.54 2.62
7304 8944 6.723298 TCTTTTGGAACCTGCAAGAAATTA 57.277 33.333 0.00 0.00 34.07 1.40
7334 8974 9.987272 AAAATAAATAAATAATCAGCCTGCCTC 57.013 29.630 0.00 0.00 0.00 4.70
7337 8977 6.645790 AATAAATAATCAGCCTGCCTCTTG 57.354 37.500 0.00 0.00 0.00 3.02
7370 9010 5.410439 ACAATTCCAGCTTTGATCAAAATGC 59.590 36.000 20.82 20.11 0.00 3.56
7388 9028 1.078214 CCGTGGTCCTGCACATCAT 60.078 57.895 0.00 0.00 0.00 2.45
7401 9041 7.859377 GTCCTGCACATCATATTACAGAATTTG 59.141 37.037 0.00 0.00 0.00 2.32
7440 9080 6.633856 ACAGTAATTTTCTTGGAATGATGCC 58.366 36.000 0.00 0.00 0.00 4.40
7444 9084 3.530265 TTTCTTGGAATGATGCCATGC 57.470 42.857 0.00 0.00 34.90 4.06
7460 9100 2.607526 CCATGCGAATGACAAAACTGCA 60.608 45.455 4.44 0.00 35.10 4.41
7461 9101 3.247442 CATGCGAATGACAAAACTGCAT 58.753 40.909 0.00 0.00 41.83 3.96
7473 9113 6.017400 ACAAAACTGCATCTGATTTACTGG 57.983 37.500 0.00 0.00 0.00 4.00
7515 9155 3.282920 GGCCAGCGCTTCTATGCC 61.283 66.667 7.50 11.65 35.56 4.40
7523 9163 1.287730 CGCTTCTATGCCGCTGGATC 61.288 60.000 0.00 0.00 0.00 3.36
7529 9169 2.087462 TATGCCGCTGGATCCGAGTG 62.087 60.000 7.39 11.79 0.00 3.51
7537 9177 1.176619 TGGATCCGAGTGTCGTGTGT 61.177 55.000 7.39 0.00 38.40 3.72
7543 9183 5.390673 GGATCCGAGTGTCGTGTGTATATAG 60.391 48.000 0.00 0.00 38.40 1.31
7545 9185 3.562973 CCGAGTGTCGTGTGTATATAGGT 59.437 47.826 0.00 0.00 38.40 3.08
7547 9187 4.271776 CGAGTGTCGTGTGTATATAGGTCA 59.728 45.833 0.00 0.00 34.72 4.02
7554 9194 7.031372 GTCGTGTGTATATAGGTCAAGAAACA 58.969 38.462 0.00 0.00 0.00 2.83
7555 9195 7.705325 GTCGTGTGTATATAGGTCAAGAAACAT 59.295 37.037 0.00 0.00 0.00 2.71
7556 9196 8.255206 TCGTGTGTATATAGGTCAAGAAACATT 58.745 33.333 0.00 0.00 0.00 2.71
7557 9197 8.328146 CGTGTGTATATAGGTCAAGAAACATTG 58.672 37.037 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.553706 ATTGCTTTCCTCCTTGCTGG 58.446 50.000 0.00 0.00 37.10 4.85
65 66 1.671901 GGCTCTGGAAGACTCCCTCG 61.672 65.000 0.00 0.00 38.67 4.63
80 81 1.612463 GCATGGATTGATTGAGGGCTC 59.388 52.381 0.00 0.00 0.00 4.70
131 132 0.383231 GCGCCCTTTCCTTGATCATG 59.617 55.000 0.00 0.00 0.00 3.07
167 168 2.054453 GGCCCCAACTGCTCCATTC 61.054 63.158 0.00 0.00 0.00 2.67
276 277 2.046314 ATCGTCCCGGCAAACTGG 60.046 61.111 0.00 0.00 42.66 4.00
322 323 2.852495 ATCTACGCTGCCCACAACCG 62.852 60.000 0.00 0.00 0.00 4.44
335 336 1.227380 GGCTGCAGGGTCATCTACG 60.227 63.158 17.12 0.00 0.00 3.51
412 413 2.476854 GCATTCGAAGCAATGACCACTC 60.477 50.000 3.35 0.00 36.03 3.51
429 430 2.226437 CGTTCACAACCTGCTTAGCATT 59.774 45.455 7.58 0.00 38.13 3.56
633 638 3.694566 GAGTGTGGGATACAATTTGGGTC 59.305 47.826 0.78 0.00 41.89 4.46
699 704 3.063510 TGAGCCAATTCCAGACTTCTG 57.936 47.619 0.00 0.00 43.40 3.02
700 705 3.795688 TTGAGCCAATTCCAGACTTCT 57.204 42.857 0.00 0.00 0.00 2.85
701 706 4.853924 TTTTGAGCCAATTCCAGACTTC 57.146 40.909 0.00 0.00 0.00 3.01
733 738 1.270358 ACGCAGAAGGTTCCAGACTTC 60.270 52.381 0.00 0.00 42.56 3.01
734 739 0.759346 ACGCAGAAGGTTCCAGACTT 59.241 50.000 0.00 0.00 0.00 3.01
735 740 0.318762 GACGCAGAAGGTTCCAGACT 59.681 55.000 0.00 0.00 0.00 3.24
736 741 1.009389 CGACGCAGAAGGTTCCAGAC 61.009 60.000 0.00 0.00 0.00 3.51
740 745 3.119096 GCCGACGCAGAAGGTTCC 61.119 66.667 0.00 0.00 34.03 3.62
759 764 4.157120 CCGACGCCCCTTGGTAGG 62.157 72.222 0.00 0.00 41.60 3.18
848 854 6.574462 TCGTTTTCTTTTCTTTATTTACGCCG 59.426 34.615 0.00 0.00 0.00 6.46
909 918 0.165295 GGTACACGCGCTTTCCTTTC 59.835 55.000 5.73 0.00 0.00 2.62
993 1005 1.878734 CCTACTACTACCCTAGTGCGC 59.121 57.143 0.00 0.00 39.81 6.09
1019 1031 3.522731 CACTCGCTCTCCCCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
1057 1083 0.478942 TCCTACGCTCCTCCTGCTAT 59.521 55.000 0.00 0.00 0.00 2.97
1230 1262 1.070289 CCCCCTAACTAATCGACCAGC 59.930 57.143 0.00 0.00 0.00 4.85
1275 1307 0.320771 AACAGCAGATCCGTGACACC 60.321 55.000 0.00 0.00 0.00 4.16
1276 1308 1.071605 GAACAGCAGATCCGTGACAC 58.928 55.000 0.00 0.00 0.00 3.67
1282 1314 0.926155 CGACATGAACAGCAGATCCG 59.074 55.000 0.00 0.00 0.00 4.18
1321 1353 4.659172 TTCGCCCACAAGCCCCAG 62.659 66.667 0.00 0.00 0.00 4.45
1350 1388 1.140407 CGAATCGACCGCTCCAAGAC 61.140 60.000 0.00 0.00 0.00 3.01
1379 1417 1.384082 CTCACCCTTACCCCGGGAT 60.384 63.158 26.32 7.71 44.90 3.85
1471 1515 4.607293 AGCAAACAGGAAAAGAAATCCC 57.393 40.909 0.00 0.00 37.71 3.85
1504 1548 1.470632 CCATCGCCACTCTCAGAGAAC 60.471 57.143 9.27 0.00 33.32 3.01
1612 1668 7.510407 ACTAGGGCTTTGAAGTAGGATATTTC 58.490 38.462 0.00 0.00 37.75 2.17
1619 1675 4.906618 TGAAACTAGGGCTTTGAAGTAGG 58.093 43.478 0.00 0.00 0.00 3.18
1695 1751 7.986085 AGATGCAAACATAAACAAGTACTCT 57.014 32.000 0.00 0.00 36.35 3.24
1868 1924 9.666626 CCGGACAGAAGAATCGATATTATATAC 57.333 37.037 0.00 0.00 0.00 1.47
1869 1925 8.847196 CCCGGACAGAAGAATCGATATTATATA 58.153 37.037 0.73 0.00 0.00 0.86
1870 1926 7.560262 TCCCGGACAGAAGAATCGATATTATAT 59.440 37.037 0.73 0.00 0.00 0.86
1871 1927 6.888088 TCCCGGACAGAAGAATCGATATTATA 59.112 38.462 0.73 0.00 0.00 0.98
1872 1928 5.715279 TCCCGGACAGAAGAATCGATATTAT 59.285 40.000 0.73 0.00 0.00 1.28
1873 1929 5.048224 GTCCCGGACAGAAGAATCGATATTA 60.048 44.000 13.05 0.00 32.09 0.98
1874 1930 3.895656 TCCCGGACAGAAGAATCGATATT 59.104 43.478 0.73 0.00 0.00 1.28
1878 1934 0.815734 GTCCCGGACAGAAGAATCGA 59.184 55.000 13.05 0.00 32.09 3.59
1959 2015 5.530915 CACACCAACCACTCTCTTCAAATAA 59.469 40.000 0.00 0.00 0.00 1.40
1983 2039 7.559590 ACACTGAATTCAAGTTATATCCTGC 57.440 36.000 9.88 0.00 0.00 4.85
2030 2086 4.615949 CACATCACAGTAGATCCAGTAGC 58.384 47.826 0.00 0.00 0.00 3.58
2127 2183 7.747690 TCTTCTTAACAGTTAACCCCATTGTA 58.252 34.615 0.88 0.00 0.00 2.41
2182 2238 6.546034 TCTCTCGGACAATACATGATAAGACA 59.454 38.462 0.00 0.00 0.00 3.41
2198 2254 0.031449 GCCAGCTATGTCTCTCGGAC 59.969 60.000 0.00 0.00 44.70 4.79
2392 2448 6.109359 AGGTAAGTGAATCATGTAACTGAGC 58.891 40.000 0.00 0.00 0.00 4.26
2400 2456 5.547465 TGAAACGAGGTAAGTGAATCATGT 58.453 37.500 0.00 0.00 0.00 3.21
2401 2457 6.536582 AGATGAAACGAGGTAAGTGAATCATG 59.463 38.462 0.00 0.00 0.00 3.07
2402 2458 6.644347 AGATGAAACGAGGTAAGTGAATCAT 58.356 36.000 0.00 0.00 0.00 2.45
2403 2459 6.037786 AGATGAAACGAGGTAAGTGAATCA 57.962 37.500 0.00 0.00 0.00 2.57
2404 2460 6.590292 TCAAGATGAAACGAGGTAAGTGAATC 59.410 38.462 0.00 0.00 0.00 2.52
2405 2461 6.464222 TCAAGATGAAACGAGGTAAGTGAAT 58.536 36.000 0.00 0.00 0.00 2.57
2406 2462 5.849510 TCAAGATGAAACGAGGTAAGTGAA 58.150 37.500 0.00 0.00 0.00 3.18
2407 2463 5.462530 TCAAGATGAAACGAGGTAAGTGA 57.537 39.130 0.00 0.00 0.00 3.41
2408 2464 7.009631 CAGTATCAAGATGAAACGAGGTAAGTG 59.990 40.741 0.00 0.00 0.00 3.16
2409 2465 7.036220 CAGTATCAAGATGAAACGAGGTAAGT 58.964 38.462 0.00 0.00 0.00 2.24
2410 2466 7.221067 GTCAGTATCAAGATGAAACGAGGTAAG 59.779 40.741 0.00 0.00 0.00 2.34
2411 2467 7.033791 GTCAGTATCAAGATGAAACGAGGTAA 58.966 38.462 0.00 0.00 0.00 2.85
2412 2468 6.152154 TGTCAGTATCAAGATGAAACGAGGTA 59.848 38.462 0.00 0.00 0.00 3.08
2413 2469 5.047306 TGTCAGTATCAAGATGAAACGAGGT 60.047 40.000 0.00 0.00 0.00 3.85
2414 2470 5.410924 TGTCAGTATCAAGATGAAACGAGG 58.589 41.667 0.00 0.00 0.00 4.63
2415 2471 6.753744 TCATGTCAGTATCAAGATGAAACGAG 59.246 38.462 0.00 0.00 0.00 4.18
2416 2472 6.630071 TCATGTCAGTATCAAGATGAAACGA 58.370 36.000 0.00 0.00 0.00 3.85
2417 2473 6.892310 TCATGTCAGTATCAAGATGAAACG 57.108 37.500 0.00 0.00 0.00 3.60
2418 2474 8.886719 TGAATCATGTCAGTATCAAGATGAAAC 58.113 33.333 0.00 0.00 30.13 2.78
2419 2475 8.886719 GTGAATCATGTCAGTATCAAGATGAAA 58.113 33.333 0.00 0.00 30.13 2.69
2420 2476 8.262933 AGTGAATCATGTCAGTATCAAGATGAA 58.737 33.333 0.00 0.00 30.13 2.57
2421 2477 7.789026 AGTGAATCATGTCAGTATCAAGATGA 58.211 34.615 0.00 0.00 30.79 2.92
2422 2478 8.434733 AAGTGAATCATGTCAGTATCAAGATG 57.565 34.615 0.00 0.00 30.77 2.90
2423 2479 9.539825 GTAAGTGAATCATGTCAGTATCAAGAT 57.460 33.333 0.00 0.00 30.77 2.40
2424 2480 7.981789 GGTAAGTGAATCATGTCAGTATCAAGA 59.018 37.037 0.00 0.00 30.77 3.02
2425 2481 7.984050 AGGTAAGTGAATCATGTCAGTATCAAG 59.016 37.037 0.00 0.00 30.77 3.02
2426 2482 7.851228 AGGTAAGTGAATCATGTCAGTATCAA 58.149 34.615 0.00 0.00 30.77 2.57
2427 2483 7.423844 AGGTAAGTGAATCATGTCAGTATCA 57.576 36.000 0.00 0.00 30.77 2.15
2428 2484 6.638873 CGAGGTAAGTGAATCATGTCAGTATC 59.361 42.308 0.00 0.00 30.77 2.24
2429 2485 6.096987 ACGAGGTAAGTGAATCATGTCAGTAT 59.903 38.462 0.00 0.00 30.77 2.12
2430 2486 5.417894 ACGAGGTAAGTGAATCATGTCAGTA 59.582 40.000 0.00 0.00 30.77 2.74
2431 2487 4.220821 ACGAGGTAAGTGAATCATGTCAGT 59.779 41.667 0.00 0.00 32.35 3.41
2432 2488 4.748892 ACGAGGTAAGTGAATCATGTCAG 58.251 43.478 0.00 0.00 0.00 3.51
2433 2489 4.801330 ACGAGGTAAGTGAATCATGTCA 57.199 40.909 0.00 0.00 0.00 3.58
2434 2490 5.637810 TGAAACGAGGTAAGTGAATCATGTC 59.362 40.000 0.00 0.00 0.00 3.06
2435 2491 5.547465 TGAAACGAGGTAAGTGAATCATGT 58.453 37.500 0.00 0.00 0.00 3.21
2436 2492 6.536582 AGATGAAACGAGGTAAGTGAATCATG 59.463 38.462 0.00 0.00 0.00 3.07
2437 2493 6.644347 AGATGAAACGAGGTAAGTGAATCAT 58.356 36.000 0.00 0.00 0.00 2.45
2438 2494 6.037786 AGATGAAACGAGGTAAGTGAATCA 57.962 37.500 0.00 0.00 0.00 2.57
2439 2495 6.590292 TCAAGATGAAACGAGGTAAGTGAATC 59.410 38.462 0.00 0.00 0.00 2.52
2440 2496 6.464222 TCAAGATGAAACGAGGTAAGTGAAT 58.536 36.000 0.00 0.00 0.00 2.57
2441 2497 5.849510 TCAAGATGAAACGAGGTAAGTGAA 58.150 37.500 0.00 0.00 0.00 3.18
2442 2498 5.462530 TCAAGATGAAACGAGGTAAGTGA 57.537 39.130 0.00 0.00 0.00 3.41
2443 2499 6.255887 GGTATCAAGATGAAACGAGGTAAGTG 59.744 42.308 0.00 0.00 0.00 3.16
2444 2500 6.338937 GGTATCAAGATGAAACGAGGTAAGT 58.661 40.000 0.00 0.00 0.00 2.24
2445 2501 5.459107 CGGTATCAAGATGAAACGAGGTAAG 59.541 44.000 0.00 0.00 0.00 2.34
2446 2502 5.125900 TCGGTATCAAGATGAAACGAGGTAA 59.874 40.000 0.00 0.00 30.53 2.85
2447 2503 4.641541 TCGGTATCAAGATGAAACGAGGTA 59.358 41.667 0.00 0.00 30.53 3.08
2448 2504 3.446161 TCGGTATCAAGATGAAACGAGGT 59.554 43.478 0.00 0.00 30.53 3.85
2449 2505 3.797256 GTCGGTATCAAGATGAAACGAGG 59.203 47.826 0.00 0.00 33.15 4.63
2450 2506 4.421058 TGTCGGTATCAAGATGAAACGAG 58.579 43.478 0.00 0.00 33.15 4.18
2451 2507 4.443913 TGTCGGTATCAAGATGAAACGA 57.556 40.909 0.00 0.00 31.16 3.85
2452 2508 4.803613 TCATGTCGGTATCAAGATGAAACG 59.196 41.667 0.00 0.00 0.00 3.60
2453 2509 6.851222 ATCATGTCGGTATCAAGATGAAAC 57.149 37.500 0.00 0.00 0.00 2.78
2454 2510 7.011389 GTGAATCATGTCGGTATCAAGATGAAA 59.989 37.037 0.00 0.00 0.00 2.69
2455 2511 6.479990 GTGAATCATGTCGGTATCAAGATGAA 59.520 38.462 0.00 0.00 0.00 2.57
2456 2512 5.985530 GTGAATCATGTCGGTATCAAGATGA 59.014 40.000 0.00 0.00 0.00 2.92
2457 2513 5.987953 AGTGAATCATGTCGGTATCAAGATG 59.012 40.000 0.00 0.00 0.00 2.90
2458 2514 6.166984 AGTGAATCATGTCGGTATCAAGAT 57.833 37.500 0.00 0.00 0.00 2.40
2459 2515 5.598416 AGTGAATCATGTCGGTATCAAGA 57.402 39.130 0.00 0.00 0.00 3.02
2460 2516 6.201044 GGTAAGTGAATCATGTCGGTATCAAG 59.799 42.308 0.00 0.00 0.00 3.02
2461 2517 6.046593 GGTAAGTGAATCATGTCGGTATCAA 58.953 40.000 0.00 0.00 0.00 2.57
2462 2518 5.362717 AGGTAAGTGAATCATGTCGGTATCA 59.637 40.000 0.00 0.00 0.00 2.15
2463 2519 5.844004 AGGTAAGTGAATCATGTCGGTATC 58.156 41.667 0.00 0.00 0.00 2.24
2464 2520 5.362717 TGAGGTAAGTGAATCATGTCGGTAT 59.637 40.000 0.00 0.00 0.00 2.73
2465 2521 4.707934 TGAGGTAAGTGAATCATGTCGGTA 59.292 41.667 0.00 0.00 0.00 4.02
2466 2522 3.513912 TGAGGTAAGTGAATCATGTCGGT 59.486 43.478 0.00 0.00 0.00 4.69
2467 2523 4.123497 TGAGGTAAGTGAATCATGTCGG 57.877 45.455 0.00 0.00 0.00 4.79
2468 2524 6.313658 TGAAATGAGGTAAGTGAATCATGTCG 59.686 38.462 0.00 0.00 38.65 4.35
2469 2525 7.615582 TGAAATGAGGTAAGTGAATCATGTC 57.384 36.000 0.00 0.00 37.07 3.06
2470 2526 8.051535 AGATGAAATGAGGTAAGTGAATCATGT 58.948 33.333 0.00 0.00 32.85 3.21
2488 2544 7.551974 CAGTGGAAGTCAGTATCAAGATGAAAT 59.448 37.037 0.00 0.00 0.00 2.17
2499 2555 7.390718 GGAAATTACAACAGTGGAAGTCAGTAT 59.609 37.037 0.00 0.00 28.53 2.12
2506 2562 5.766150 TGTGGAAATTACAACAGTGGAAG 57.234 39.130 0.00 0.00 28.53 3.46
2560 2616 5.428496 TTGTTTCAATTGCTCTCACAGAG 57.572 39.130 0.00 0.00 45.04 3.35
2605 2661 1.003233 AGCACCCAGTAAGTAAGCCAC 59.997 52.381 0.00 0.00 0.00 5.01
2685 2741 5.877012 GTGTATCTGAAGATCCAGAAAAGCA 59.123 40.000 5.87 1.72 45.22 3.91
2686 2742 6.112058 AGTGTATCTGAAGATCCAGAAAAGC 58.888 40.000 5.87 0.00 45.22 3.51
2726 2785 9.100197 ACTGAACATTTTGGGATATTAAAGGTT 57.900 29.630 0.00 0.00 38.14 3.50
2732 2791 7.453126 ACCAACACTGAACATTTTGGGATATTA 59.547 33.333 3.84 0.00 40.97 0.98
2760 2819 5.690865 TGGAAACTAGAAATTGTGAGGTGT 58.309 37.500 0.00 0.00 0.00 4.16
2768 2829 9.057089 ACTTTCACTACTGGAAACTAGAAATTG 57.943 33.333 0.00 0.00 31.44 2.32
2777 2838 7.311364 TGTTACAACTTTCACTACTGGAAAC 57.689 36.000 0.00 0.00 31.44 2.78
2794 2855 7.773224 TCTTCTCTTGGTCTTTCATTGTTACAA 59.227 33.333 0.00 0.00 0.00 2.41
2802 2863 5.072329 TCCAACTCTTCTCTTGGTCTTTCAT 59.928 40.000 0.00 0.00 38.50 2.57
2804 2865 4.752604 GTCCAACTCTTCTCTTGGTCTTTC 59.247 45.833 0.00 0.00 38.50 2.62
2821 2882 2.821969 AGCACATTGAATCAGGTCCAAC 59.178 45.455 0.00 0.00 0.00 3.77
2826 2887 3.996921 AGAGAGCACATTGAATCAGGT 57.003 42.857 0.00 0.00 0.00 4.00
2844 2905 9.097257 CAAGAAAACCAAGAAAAGCATAAAAGA 57.903 29.630 0.00 0.00 0.00 2.52
2916 2977 4.439289 GCCTCTTGGTGCATCAAATAGTTC 60.439 45.833 14.46 5.01 35.27 3.01
2944 3005 9.874205 CTCTTAAGAAAGGATATCTGATCATCC 57.126 37.037 6.63 5.10 40.98 3.51
3049 3110 1.160137 CACAAGGCAACAGCTCTACC 58.840 55.000 0.00 0.00 41.41 3.18
3053 3114 0.819259 TGGTCACAAGGCAACAGCTC 60.819 55.000 0.00 0.00 41.41 4.09
3082 3143 0.469331 TGTGTCCAGGACTCGAACCT 60.469 55.000 20.82 5.17 38.40 3.50
3111 3172 1.134037 ACTTTGGGTCCTTTGTACGCA 60.134 47.619 0.00 0.00 37.94 5.24
3113 3174 2.551032 GGAACTTTGGGTCCTTTGTACG 59.449 50.000 0.00 0.00 0.00 3.67
3114 3175 2.889045 GGGAACTTTGGGTCCTTTGTAC 59.111 50.000 0.00 0.00 0.00 2.90
3115 3176 2.158430 GGGGAACTTTGGGTCCTTTGTA 60.158 50.000 0.00 0.00 0.00 2.41
3121 3199 2.035155 CCGGGGAACTTTGGGTCC 59.965 66.667 0.00 0.00 0.00 4.46
3149 3238 2.125147 GTGCACATAGCTCCCGCA 60.125 61.111 13.17 0.00 45.94 5.69
3183 3272 9.918630 ATTAATGGCTCATATTAGTTTGATTGC 57.081 29.630 0.00 0.00 0.00 3.56
3206 3295 7.174253 ACATCTTTTCGCCTTGTAACAAGATTA 59.826 33.333 0.00 0.00 29.05 1.75
3211 3300 5.066634 TGAACATCTTTTCGCCTTGTAACAA 59.933 36.000 0.00 0.00 0.00 2.83
3213 3302 5.049680 TCTGAACATCTTTTCGCCTTGTAAC 60.050 40.000 0.00 0.00 0.00 2.50
3226 3315 6.656902 TCAGGAAAGCATATCTGAACATCTT 58.343 36.000 0.00 0.00 33.87 2.40
3227 3316 6.099413 TCTCAGGAAAGCATATCTGAACATCT 59.901 38.462 0.00 0.00 36.06 2.90
3374 3463 8.833231 ATTTATACGGAATGTGAAGTCTATGG 57.167 34.615 0.00 0.00 0.00 2.74
3376 3465 9.698309 CAGATTTATACGGAATGTGAAGTCTAT 57.302 33.333 0.00 0.00 31.49 1.98
3384 3473 6.288294 TCCTTCCAGATTTATACGGAATGTG 58.712 40.000 0.00 0.00 36.94 3.21
3385 3474 6.494666 TCCTTCCAGATTTATACGGAATGT 57.505 37.500 0.00 0.00 36.94 2.71
3388 3477 7.570132 TCATTTCCTTCCAGATTTATACGGAA 58.430 34.615 0.00 0.00 36.17 4.30
3391 3480 9.489084 TGTATCATTTCCTTCCAGATTTATACG 57.511 33.333 0.00 0.00 0.00 3.06
3398 3487 8.717717 TCAGTTATGTATCATTTCCTTCCAGAT 58.282 33.333 0.00 0.00 0.00 2.90
3405 3494 6.543831 GGTGCTTCAGTTATGTATCATTTCCT 59.456 38.462 0.00 0.00 0.00 3.36
3411 3500 5.988287 TCATGGTGCTTCAGTTATGTATCA 58.012 37.500 0.00 0.00 0.00 2.15
3455 3544 9.784531 AGAATCGATATCACAAATTACCTCAAT 57.215 29.630 0.00 0.00 0.00 2.57
3493 3582 5.081032 ACTGGAGATACTAGCAAGGATACC 58.919 45.833 0.00 0.00 37.17 2.73
3496 3585 5.211973 TGAACTGGAGATACTAGCAAGGAT 58.788 41.667 0.00 0.00 0.00 3.24
3551 3641 8.020861 TCGTAAGTATCAAATGGTTGTGTTAC 57.979 34.615 0.00 0.00 35.75 2.50
3579 3669 9.326413 GTATACTACCTACCTACGTACTCAAAA 57.674 37.037 0.00 0.00 0.00 2.44
3585 3675 8.091449 ACAGATGTATACTACCTACCTACGTAC 58.909 40.741 4.17 0.00 0.00 3.67
3586 3676 8.090831 CACAGATGTATACTACCTACCTACGTA 58.909 40.741 4.17 0.00 0.00 3.57
3589 3681 8.915057 TTCACAGATGTATACTACCTACCTAC 57.085 38.462 4.17 0.00 0.00 3.18
3735 3827 4.691326 TGTACCAATTGTGTGACCTACA 57.309 40.909 4.43 1.02 36.82 2.74
3998 4098 9.549078 CGCCTCTACTAGTAATATCTGATGATA 57.451 37.037 3.76 0.00 39.25 2.15
4024 4124 9.742144 TCAGATACTAGATACCAAGTAAGATCC 57.258 37.037 0.00 0.00 32.24 3.36
4573 5260 5.034152 ACTTTTTGTACGCATGTTTCAGTG 58.966 37.500 0.00 0.00 0.00 3.66
4990 5744 6.983307 TCTTTGTTGTAATGTTTTGGTGATGG 59.017 34.615 0.00 0.00 0.00 3.51
5023 5777 6.538742 CGACCAATAATCTGTTCCTGTACATT 59.461 38.462 0.00 0.00 0.00 2.71
5101 5861 3.566322 CCGTCCAGGTTGTATTTTGAACA 59.434 43.478 0.00 0.00 34.51 3.18
5166 5926 7.950124 TCTTCTGTCCCATACATGTAGATCATA 59.050 37.037 11.91 0.00 37.50 2.15
5184 5944 7.148188 TGGCAATGACATTCTTATTCTTCTGTC 60.148 37.037 0.00 0.00 34.91 3.51
5204 5964 9.553064 TTCAAGTTGTTAATATTTGTTGGCAAT 57.447 25.926 1.92 0.00 34.18 3.56
5206 5966 8.821894 GTTTCAAGTTGTTAATATTTGTTGGCA 58.178 29.630 2.11 0.00 0.00 4.92
5292 6632 8.416329 GCCTATGTTTCTTTTGATCATACCAAT 58.584 33.333 0.00 0.00 0.00 3.16
5293 6633 7.415095 CGCCTATGTTTCTTTTGATCATACCAA 60.415 37.037 0.00 0.00 0.00 3.67
5294 6634 6.038161 CGCCTATGTTTCTTTTGATCATACCA 59.962 38.462 0.00 0.00 0.00 3.25
5295 6635 6.038271 ACGCCTATGTTTCTTTTGATCATACC 59.962 38.462 0.00 0.00 0.00 2.73
5318 6658 8.169268 TGTTTTGCCTTTTAATGTAAAAACACG 58.831 29.630 6.69 0.00 39.67 4.49
5327 6667 7.546778 AACGAAATGTTTTGCCTTTTAATGT 57.453 28.000 0.00 0.00 37.59 2.71
5386 6727 4.039852 GGGCAATTCTGGTTACAGGAAAAA 59.960 41.667 0.00 0.00 44.99 1.94
5387 6728 3.576550 GGGCAATTCTGGTTACAGGAAAA 59.423 43.478 0.00 0.00 44.99 2.29
5388 6729 3.161866 GGGCAATTCTGGTTACAGGAAA 58.838 45.455 0.00 0.00 44.99 3.13
5389 6730 2.378547 AGGGCAATTCTGGTTACAGGAA 59.621 45.455 0.00 0.00 44.99 3.36
5406 6749 1.211457 AGATGTCCAGTGATCAAGGGC 59.789 52.381 12.02 12.02 0.00 5.19
5417 6760 8.567285 AGGAGTATTTAACAAAAGATGTCCAG 57.433 34.615 0.00 0.00 42.99 3.86
5424 6767 9.939802 GAGGTAAGAGGAGTATTTAACAAAAGA 57.060 33.333 0.00 0.00 0.00 2.52
5429 6772 9.537852 TTGTAGAGGTAAGAGGAGTATTTAACA 57.462 33.333 0.00 0.00 0.00 2.41
5437 6780 4.020543 CAGCTTGTAGAGGTAAGAGGAGT 58.979 47.826 0.00 0.00 33.99 3.85
5438 6781 3.383185 CCAGCTTGTAGAGGTAAGAGGAG 59.617 52.174 0.00 0.00 33.99 3.69
5452 6795 3.182152 AGTATAAGACACCCCAGCTTGT 58.818 45.455 0.00 0.00 0.00 3.16
5569 6914 1.304713 AGCACCATTGAAGCAGGGG 60.305 57.895 3.70 0.00 0.00 4.79
5572 6917 0.601558 AAGCAGCACCATTGAAGCAG 59.398 50.000 0.00 0.00 0.00 4.24
5599 6944 4.418401 GGCCGCGCAAAATGCTCA 62.418 61.111 8.75 0.00 42.25 4.26
5668 7013 8.812972 AGTACATCATCAGGTTTACTCAACTTA 58.187 33.333 0.00 0.00 35.46 2.24
5681 7026 2.288091 CGGCTGAGAGTACATCATCAGG 60.288 54.545 14.52 1.69 39.63 3.86
5689 7034 0.322546 TCTCTGCGGCTGAGAGTACA 60.323 55.000 28.68 12.05 38.51 2.90
5731 7076 7.025485 GCTAATTAGCTTCTCAAATGCTTCT 57.975 36.000 26.79 0.00 45.62 2.85
5821 7166 7.545362 AAGCAAGAATATAGCAACACTACAG 57.455 36.000 0.00 0.00 32.32 2.74
5824 7169 9.261180 GACATAAGCAAGAATATAGCAACACTA 57.739 33.333 0.00 0.00 34.64 2.74
5864 7209 4.027437 AGAGTAGGATGAAGAAGGGACAC 58.973 47.826 0.00 0.00 0.00 3.67
5870 7215 3.791973 ACGCAGAGTAGGATGAAGAAG 57.208 47.619 0.00 0.00 0.00 2.85
5883 7228 6.504398 TGATTCATAAACCTACTACGCAGAG 58.496 40.000 0.00 0.00 0.00 3.35
5928 7293 5.352284 AGTCAATCAGCCAGTTATCTTACG 58.648 41.667 0.00 0.00 0.00 3.18
5933 7298 4.764172 AGTGAGTCAATCAGCCAGTTATC 58.236 43.478 0.00 0.00 39.07 1.75
5958 7323 3.388345 TGCAATGCAAGCATTCAAAGA 57.612 38.095 16.75 0.00 43.92 2.52
5982 7347 2.095969 CAGGAAAACGCGCTTGTCAATA 60.096 45.455 5.73 0.00 0.00 1.90
5990 7355 3.660111 GGTGCAGGAAAACGCGCT 61.660 61.111 5.73 0.00 38.67 5.92
5993 7358 1.008538 CACTGGTGCAGGAAAACGC 60.009 57.895 0.00 0.00 35.51 4.84
5994 7359 0.029300 CACACTGGTGCAGGAAAACG 59.971 55.000 0.17 0.00 38.37 3.60
6010 7375 5.704978 TGTAGCAATTGAACTATTGAGCACA 59.295 36.000 10.34 8.77 37.65 4.57
6017 7382 6.573664 TGCAAGTGTAGCAATTGAACTATT 57.426 33.333 10.34 3.29 41.15 1.73
6038 7403 6.998673 ACATAGAGGGGAAGTACAATTTATGC 59.001 38.462 0.00 0.00 0.00 3.14
6068 7436 1.781786 TGCACTAGCTAGAGGGAAGG 58.218 55.000 27.45 8.12 42.74 3.46
6149 7517 0.036010 CCTCCTGCAAGATTGACCGT 60.036 55.000 0.00 0.00 34.07 4.83
6304 7672 6.102897 AGCCTTCGCTACTAATCATAACAT 57.897 37.500 0.00 0.00 46.08 2.71
6405 7773 1.944709 CGCATCATGCAATCCTCAAGA 59.055 47.619 11.00 0.00 45.36 3.02
6448 7816 3.257375 TCAGCCGTCACATAGTAGTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6453 7821 4.938080 AGAATTCAGCCGTCACATAGTAG 58.062 43.478 8.44 0.00 0.00 2.57
6454 7822 5.109210 CAAGAATTCAGCCGTCACATAGTA 58.891 41.667 8.44 0.00 0.00 1.82
6492 7860 3.071874 TCATCTGGGAACATGTCAACC 57.928 47.619 0.00 2.41 41.51 3.77
6493 7861 4.012374 ACATCATCTGGGAACATGTCAAC 58.988 43.478 0.00 0.00 41.51 3.18
6592 7960 4.134563 ACACACAGGAAATCGCTAAGTTT 58.865 39.130 0.00 0.00 0.00 2.66
6596 7964 4.688879 CACTAACACACAGGAAATCGCTAA 59.311 41.667 0.00 0.00 0.00 3.09
6620 7988 0.106918 TGAAACGCACAACTTCCCCT 60.107 50.000 0.00 0.00 0.00 4.79
6656 8024 7.416777 GCCCATTTGAAGTTCTTAATTCTAGGG 60.417 40.741 4.17 10.73 0.00 3.53
6657 8025 7.484140 GCCCATTTGAAGTTCTTAATTCTAGG 58.516 38.462 4.17 2.53 0.00 3.02
6861 8230 6.833933 ACCTAATAGGCCCACTTAAGAATTTG 59.166 38.462 10.09 0.00 39.63 2.32
6867 8236 5.071788 TGATGACCTAATAGGCCCACTTAAG 59.928 44.000 6.17 0.00 39.63 1.85
6869 8238 4.562767 TGATGACCTAATAGGCCCACTTA 58.437 43.478 6.17 0.00 39.63 2.24
6871 8240 3.060479 TGATGACCTAATAGGCCCACT 57.940 47.619 6.17 0.00 39.63 4.00
6872 8241 3.118038 TGTTGATGACCTAATAGGCCCAC 60.118 47.826 6.17 0.00 39.63 4.61
6873 8242 3.119319 TGTTGATGACCTAATAGGCCCA 58.881 45.455 6.17 5.37 39.63 5.36
6874 8243 3.391296 TCTGTTGATGACCTAATAGGCCC 59.609 47.826 6.17 0.00 39.63 5.80
6875 8244 4.381411 GTCTGTTGATGACCTAATAGGCC 58.619 47.826 6.17 0.00 39.63 5.19
7023 8627 7.119116 CAGCGGCTAAACACATATTTGGATATA 59.881 37.037 0.26 0.00 0.00 0.86
7026 8630 4.036734 CAGCGGCTAAACACATATTTGGAT 59.963 41.667 0.26 0.00 0.00 3.41
7060 8664 7.054751 AGGTGCTTAGGAATATAAACCTCAAC 58.945 38.462 4.66 1.61 37.68 3.18
7084 8688 3.129287 AGAGCAAACCACAACAGTGAAAG 59.871 43.478 0.00 0.00 35.24 2.62
7143 8760 0.674581 TCGCCAGATGCAAAGACCAG 60.675 55.000 0.00 0.00 41.33 4.00
7144 8761 0.035152 ATCGCCAGATGCAAAGACCA 60.035 50.000 0.00 0.00 41.33 4.02
7145 8762 0.379669 CATCGCCAGATGCAAAGACC 59.620 55.000 0.00 0.00 46.46 3.85
7146 8763 3.911989 CATCGCCAGATGCAAAGAC 57.088 52.632 0.00 0.00 46.46 3.01
7154 8771 3.130280 TGATTGTATGCATCGCCAGAT 57.870 42.857 0.19 0.00 37.65 2.90
7155 8772 2.618442 TGATTGTATGCATCGCCAGA 57.382 45.000 0.19 0.00 0.00 3.86
7156 8773 3.909776 AATGATTGTATGCATCGCCAG 57.090 42.857 0.19 0.00 0.00 4.85
7157 8774 4.652421 AAAATGATTGTATGCATCGCCA 57.348 36.364 0.19 0.00 0.00 5.69
7158 8775 8.915871 ATAATAAAATGATTGTATGCATCGCC 57.084 30.769 0.19 0.00 0.00 5.54
7223 8845 4.100808 CCACAAGATTCTTTCCCACCAAAA 59.899 41.667 0.00 0.00 0.00 2.44
7236 8858 5.253330 TGATTACAAGGTCCCACAAGATTC 58.747 41.667 0.00 0.00 0.00 2.52
7269 8909 7.525029 GCAGGTTCCAAAAGAAGTACTAGTAGA 60.525 40.741 1.87 0.00 34.29 2.59
7334 8974 3.809279 GCTGGAATTGTTTGGTTTCCAAG 59.191 43.478 5.26 1.98 46.07 3.61
7337 8977 3.751479 AGCTGGAATTGTTTGGTTTCC 57.249 42.857 0.00 0.00 39.50 3.13
7370 9010 0.177836 TATGATGTGCAGGACCACGG 59.822 55.000 0.00 0.00 38.55 4.94
7440 9080 2.663808 TGCAGTTTTGTCATTCGCATG 58.336 42.857 0.00 0.00 0.00 4.06
7444 9084 4.408993 TCAGATGCAGTTTTGTCATTCG 57.591 40.909 0.00 0.00 0.00 3.34
7460 9100 2.540515 CGTGTCGCCAGTAAATCAGAT 58.459 47.619 0.00 0.00 0.00 2.90
7461 9101 1.990799 CGTGTCGCCAGTAAATCAGA 58.009 50.000 0.00 0.00 0.00 3.27
7483 9123 0.395448 TGGCCAAATGCATCCGATGA 60.395 50.000 12.79 0.00 43.89 2.92
7489 9129 2.567564 AAGCGCTGGCCAAATGCATC 62.568 55.000 12.58 10.36 43.89 3.91
7515 9155 2.278206 CGACACTCGGATCCAGCG 60.278 66.667 13.41 5.22 36.00 5.18
7523 9163 3.562973 ACCTATATACACACGACACTCGG 59.437 47.826 0.00 0.00 45.59 4.63
7529 9169 7.031372 TGTTTCTTGACCTATATACACACGAC 58.969 38.462 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.