AutoCloner

Multiple sequence alignment - TraesCS7B01G090500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G090500	chr7B	100.000	2455	0	0	1	2455	104756605	104759059	0.000000e+00	4534
1	TraesCS7B01G090500	chr7B	97.196	428	11	1	280	706	192454104	192454531	0.000000e+00	723
2	TraesCS7B01G090500	chr7B	96.956	427	13	0	280	706	66170253	66170679	0.000000e+00	717
3	TraesCS7B01G090500	chr7B	97.393	422	10	1	287	707	439997442	439997021	0.000000e+00	717
4	TraesCS7B01G090500	chr7B	100.000	102	0	0	181	282	79398154	79398255	3.220000e-44	189
5	TraesCS7B01G090500	chr7B	100.000	102	0	0	181	282	184483325	184483426	3.220000e-44	189
6	TraesCS7B01G090500	chr7B	100.000	102	0	0	181	282	684817307	684817408	3.220000e-44	189
7	TraesCS7B01G090500	chr7B	100.000	102	0	0	181	282	693860987	693861088	3.220000e-44	189
8	TraesCS7B01G090500	chr7D	91.241	1233	56	23	1226	2428	139829049	139830259	0.000000e+00	1631
9	TraesCS7B01G090500	chr7D	88.738	515	26	14	703	1195	139828552	139829056	3.490000e-168	601
10	TraesCS7B01G090500	chr7A	88.018	868	64	23	703	1555	139467874	139468716	0.000000e+00	990
11	TraesCS7B01G090500	chr7A	91.337	404	22	6	1658	2055	139468716	139469112	7.720000e-150	540
12	TraesCS7B01G090500	chr7A	84.884	430	23	15	2059	2455	139469399	139469819	1.770000e-106	396
13	TraesCS7B01G090500	chr6B	97.203	429	11	1	279	706	469775128	469774700	0.000000e+00	725
14	TraesCS7B01G090500	chr6B	99.448	181	1	0	1	181	520866988	520867168	1.820000e-86	329
15	TraesCS7B01G090500	chr6B	100.000	102	0	0	181	282	473639504	473639403	3.220000e-44	189
16	TraesCS7B01G090500	chr6B	100.000	102	0	0	181	282	634568260	634568361	3.220000e-44	189
17	TraesCS7B01G090500	chr6B	87.898	157	19	0	1297	1453	587799118	587799274	4.170000e-43	185
18	TraesCS7B01G090500	chr2B	97.642	424	7	3	283	704	229782479	229782057	0.000000e+00	725
19	TraesCS7B01G090500	chr2B	96.737	429	13	1	279	706	724750985	724750557	0.000000e+00	713
20	TraesCS7B01G090500	chr2B	100.000	181	0	0	1	181	724751673	724751493	3.910000e-88	335
21	TraesCS7B01G090500	chr4B	97.400	423	10	1	283	704	133611385	133610963	0.000000e+00	719
22	TraesCS7B01G090500	chr4B	99.451	182	1	0	1	182	584129743	584129924	5.060000e-87	331
23	TraesCS7B01G090500	chr4B	98.901	182	2	0	1	182	29628414	29628595	2.350000e-85	326
24	TraesCS7B01G090500	chr4B	98.901	182	2	0	1	182	29634646	29634827	2.350000e-85	326
25	TraesCS7B01G090500	chr4B	100.000	102	0	0	181	282	493532012	493531911	3.220000e-44	189
26	TraesCS7B01G090500	chr4B	100.000	102	0	0	181	282	656971552	656971451	3.220000e-44	189
27	TraesCS7B01G090500	chr4A	97.176	425	11	1	283	706	701947652	701948076	0.000000e+00	717
28	TraesCS7B01G090500	chrUn	96.948	426	12	1	280	704	266373755	266374180	0.000000e+00	713
29	TraesCS7B01G090500	chr1B	99.451	182	1	0	1	182	365450915	365451096	5.060000e-87	331
30	TraesCS7B01G090500	chr1B	99.451	182	1	0	1	182	550381216	550381397	5.060000e-87	331
31	TraesCS7B01G090500	chr1B	98.901	182	2	0	1	182	1468069	1467888	2.350000e-85	326
32	TraesCS7B01G090500	chr1A	98.901	182	2	0	1	182	583867975	583868156	2.350000e-85	326
33	TraesCS7B01G090500	chr6A	89.172	157	17	0	1297	1453	539865938	539866094	1.930000e-46	196
34	TraesCS7B01G090500	chr6D	88.535	157	18	0	1297	1453	393299674	393299830	8.960000e-45	191
35	TraesCS7B01G090500	chr3B	100.000	102	0	0	181	282	665444173	665444072	3.220000e-44	189

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G090500	chr7B	104756605	104759059	2454	False	4534	4534	100.000000	1	2455	1	chr7B.!!$F3	2454
1	TraesCS7B01G090500	chr7D	139828552	139830259	1707	False	1116	1631	89.989500	703	2428	2	chr7D.!!$F1	1725
2	TraesCS7B01G090500	chr7A	139467874	139469819	1945	False	642	990	88.079667	703	2455	3	chr7A.!!$F1	1752
3	TraesCS7B01G090500	chr2B	724750557	724751673	1116	True	524	713	98.368500	1	706	2	chr2B.!!$R2	705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
674	1086	0.032267	GGCCGCTCTATTTAGACGCT	59.968	55.0	0.0	0.0	0.0	5.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2119	2860	0.038892	ATCGTGTGCGTCCGTTACTT	60.039	50.0	0.0	0.0	39.49	2.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
228	448	0.102120	GAGTGCAGGAGTCCATCGAG	59.898	60.000	12.86	0.00	0.00	4.04
286	697	0.518764	CGAAGAGAAGACCGACGACG	60.519	60.000	0.00	0.00	39.43	5.12
348	759	4.271816	CGCCTCTACATCGCCGCT	62.272	66.667	0.00	0.00	0.00	5.52
349	760	2.355244	GCCTCTACATCGCCGCTC	60.355	66.667	0.00	0.00	0.00	5.03
470	881	1.859398	GAGTGAATCGTTGCGCACA	59.141	52.632	11.12	0.00	33.85	4.57
523	934	1.310933	ACGCCAGACTACGTCCGATT	61.311	55.000	0.00	0.00	38.28	3.34
547	958	1.606606	GATTTGCGGCGTCTTTTGAG	58.393	50.000	9.37	0.00	0.00	3.02
670	1082	1.048601	CCCAGGCCGCTCTATTTAGA	58.951	55.000	0.00	0.00	0.00	2.10
674	1086	0.032267	GGCCGCTCTATTTAGACGCT	59.968	55.000	0.00	0.00	0.00	5.07
680	1092	2.288518	GCTCTATTTAGACGCTCTGGGG	60.289	54.545	0.00	0.00	0.00	4.96
712	1124	3.070018	CTGGAGATGCCCTAATTAAGCG	58.930	50.000	3.45	0.00	34.97	4.68
716	1128	2.441750	AGATGCCCTAATTAAGCGGGAA	59.558	45.455	11.57	2.29	40.55	3.97
734	1146	2.352519	GGAAGAAACGACCGCTAACTCT	60.353	50.000	0.00	0.00	0.00	3.24
795	1211	2.453638	GCTTGGCCTACGTCTTCGC	61.454	63.158	3.32	0.00	41.18	4.70
798	1214	4.867599	GGCCTACGTCTTCGCCCG	62.868	72.222	0.00	0.00	41.18	6.13
802	1218	1.800315	CTACGTCTTCGCCCGTGTG	60.800	63.158	0.00	0.00	41.18	3.82
809	1225	0.719465	CTTCGCCCGTGTGTTGTATC	59.281	55.000	0.00	0.00	0.00	2.24
813	1229	1.014352	GCCCGTGTGTTGTATCCATC	58.986	55.000	0.00	0.00	0.00	3.51
814	1230	1.406887	GCCCGTGTGTTGTATCCATCT	60.407	52.381	0.00	0.00	0.00	2.90
815	1231	2.939640	GCCCGTGTGTTGTATCCATCTT	60.940	50.000	0.00	0.00	0.00	2.40
816	1232	3.680475	GCCCGTGTGTTGTATCCATCTTA	60.680	47.826	0.00	0.00	0.00	2.10
817	1233	4.509616	CCCGTGTGTTGTATCCATCTTAA	58.490	43.478	0.00	0.00	0.00	1.85
957	1393	1.142748	CCGATCACACAGCCTCTCC	59.857	63.158	0.00	0.00	0.00	3.71
973	1409	1.654954	CTCCATCGACCGACCTTCGT	61.655	60.000	0.00	0.00	38.40	3.85
987	1423	0.373716	CTTCGTTCGCCCTGCATTAC	59.626	55.000	0.00	0.00	0.00	1.89
1131	1570	1.154338	GGTACGACCGACACGACTG	60.154	63.158	0.00	0.00	34.70	3.51
1195	1634	2.280797	GTGCAGTCAAGCCACGGA	60.281	61.111	0.00	0.00	0.00	4.69
1196	1635	2.280797	TGCAGTCAAGCCACGGAC	60.281	61.111	0.00	0.00	0.00	4.79
1197	1636	3.414700	GCAGTCAAGCCACGGACG	61.415	66.667	0.00	0.00	39.01	4.79
1198	1637	3.414700	CAGTCAAGCCACGGACGC	61.415	66.667	0.00	0.00	39.01	5.19
1199	1638	3.923864	AGTCAAGCCACGGACGCA	61.924	61.111	0.00	0.00	39.01	5.24
1200	1639	3.414700	GTCAAGCCACGGACGCAG	61.415	66.667	0.00	0.00	0.00	5.18
1201	1640	4.680237	TCAAGCCACGGACGCAGG	62.680	66.667	0.00	0.00	0.00	4.85
1269	1709	5.949952	GTGTTTATGGGAGGTTTATGGAAGT	59.050	40.000	0.00	0.00	0.00	3.01
1274	1714	2.496070	GGGAGGTTTATGGAAGTTTGGC	59.504	50.000	0.00	0.00	0.00	4.52
1276	1716	3.056821	GGAGGTTTATGGAAGTTTGGCAC	60.057	47.826	0.00	0.00	0.00	5.01
1458	1902	1.529713	AGCCTCCTCCGCTAGCTAC	60.530	63.158	13.93	0.00	33.91	3.58
1460	1904	1.151908	CCTCCTCCGCTAGCTACCT	59.848	63.158	13.93	0.00	0.00	3.08
1545	1998	0.446616	TCTACGTACAGCTCGTGCAG	59.553	55.000	12.58	6.26	41.62	4.41
1546	1999	0.168348	CTACGTACAGCTCGTGCAGT	59.832	55.000	12.58	12.36	41.62	4.40
1623	2076	3.193479	TCCGTCGATCTATGCAAGCATAT	59.807	43.478	14.50	2.80	38.13	1.78
1652	2105	9.676195	ATGCAGATCGATCGATATCTAATTAAG	57.324	33.333	29.45	13.29	34.60	1.85
1653	2106	8.131731	TGCAGATCGATCGATATCTAATTAAGG	58.868	37.037	29.45	12.62	34.60	2.69
1654	2107	8.346300	GCAGATCGATCGATATCTAATTAAGGA	58.654	37.037	29.45	0.00	34.60	3.36
1716	2169	2.026449	AGGGCATCCATCATTAGCTAGC	60.026	50.000	6.62	6.62	34.83	3.42
1717	2170	2.026449	GGGCATCCATCATTAGCTAGCT	60.026	50.000	23.12	23.12	0.00	3.32
1718	2171	3.198635	GGGCATCCATCATTAGCTAGCTA	59.801	47.826	20.67	20.67	0.00	3.32
1719	2172	4.440880	GGCATCCATCATTAGCTAGCTAG	58.559	47.826	23.03	16.84	0.00	3.42
1728	2181	4.306967	GCTAGCTAGGGCCGCCAG	62.307	72.222	22.10	1.61	39.73	4.85
1768	2221	1.066605	CATTAGCTCACCCTTGCATGC	59.933	52.381	11.82	11.82	0.00	4.06
1778	2231	1.243342	CCTTGCATGCGGTTTCCTCA	61.243	55.000	14.09	0.00	0.00	3.86
1792	2245	0.991920	TCCTCACAGTTTCCATCCCC	59.008	55.000	0.00	0.00	0.00	4.81
1807	2262	3.039526	CCCCCTCCCCCTCTCTCT	61.040	72.222	0.00	0.00	0.00	3.10
1809	2264	1.304936	CCCCCTCCCCCTCTCTCTTA	61.305	65.000	0.00	0.00	0.00	2.10
1812	2267	2.361940	CCCCTCCCCCTCTCTCTTATTT	60.362	54.545	0.00	0.00	0.00	1.40
1817	2272	5.133491	CCTCCCCCTCTCTCTTATTTTCATT	59.867	44.000	0.00	0.00	0.00	2.57
1821	2276	5.890419	CCCCTCTCTCTTATTTTCATTTGCT	59.110	40.000	0.00	0.00	0.00	3.91
1919	2378	2.367567	CCGGTGGTGGTACTGCTAATAT	59.632	50.000	0.00	0.00	0.00	1.28
1920	2379	3.575256	CCGGTGGTGGTACTGCTAATATA	59.425	47.826	0.00	0.00	0.00	0.86
1921	2380	4.553323	CGGTGGTGGTACTGCTAATATAC	58.447	47.826	0.00	0.00	0.00	1.47
1929	2388	8.728833	GGTGGTACTGCTAATATACTACTACTG	58.271	40.741	0.00	0.00	32.58	2.74
2055	2516	2.937149	CTCCATGAGATCTGCTGTTGTG	59.063	50.000	0.00	0.00	0.00	3.33
2057	2518	1.400846	CATGAGATCTGCTGTTGTGCC	59.599	52.381	0.00	0.00	0.00	5.01
2072	2813	6.797033	GCTGTTGTGCCGATTATGTTATTATC	59.203	38.462	0.00	0.00	0.00	1.75
2093	2834	4.990257	TCAGTAATACGTACACTCTTGGC	58.010	43.478	8.36	0.00	34.88	4.52
2096	2837	2.846039	ATACGTACACTCTTGGCTCG	57.154	50.000	0.00	0.00	0.00	5.03
2119	2860	3.071479	GTGCTCGTTGATTACCCAAGAA	58.929	45.455	0.00	0.00	0.00	2.52
2169	2922	1.445716	CGGGCCGTCGTCTCTATCTT	61.446	60.000	19.97	0.00	0.00	2.40
2202	2960	4.174009	GTTGATACTTCAAGTCGCTGCTA	58.826	43.478	0.00	0.00	42.41	3.49
2428	3211	0.463295	CTCCTCTCGTGCATGGCATT	60.463	55.000	5.98	0.00	41.91	3.56
2429	3212	0.745486	TCCTCTCGTGCATGGCATTG	60.745	55.000	5.98	0.00	41.91	2.82
2430	3213	1.721664	CCTCTCGTGCATGGCATTGG	61.722	60.000	5.98	0.00	41.91	3.16
2431	3214	2.103538	CTCGTGCATGGCATTGGC	59.896	61.111	5.98	2.73	41.91	4.52
2432	3215	2.675772	TCGTGCATGGCATTGGCA	60.676	55.556	15.86	15.86	41.91	4.92
2445	3228	2.272678	CATTGGCATGGAACGTACGTA	58.727	47.619	23.12	6.57	0.00	3.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
419	830	3.771160	AGGCGTTGGCGGAGTAGG	61.771	66.667	0.00	0.00	41.24	3.18
421	832	4.077184	CCAGGCGTTGGCGGAGTA	62.077	66.667	0.00	0.00	40.87	2.59
547	958	0.883370	AAACTTGGTCGTTCCCGCTC	60.883	55.000	0.00	0.00	34.77	5.03
712	1124	1.073964	GTTAGCGGTCGTTTCTTCCC	58.926	55.000	0.00	0.00	0.00	3.97
716	1128	3.382048	AAAGAGTTAGCGGTCGTTTCT	57.618	42.857	0.00	0.00	0.00	2.52
757	1169	5.743636	AGCCAAATGCAGATTAGGAAAAA	57.256	34.783	0.00	0.00	44.83	1.94
777	1189	2.453638	GCGAAGACGTAGGCCAAGC	61.454	63.158	5.01	0.00	41.98	4.01
791	1207	0.671163	GGATACAACACACGGGCGAA	60.671	55.000	0.00	0.00	0.00	4.70
809	1225	3.316308	CGGGGAGAGCAAAATTAAGATGG	59.684	47.826	0.00	0.00	0.00	3.51
813	1229	3.610911	AGACGGGGAGAGCAAAATTAAG	58.389	45.455	0.00	0.00	0.00	1.85
814	1230	3.713826	AGACGGGGAGAGCAAAATTAA	57.286	42.857	0.00	0.00	0.00	1.40
815	1231	3.263425	AGAAGACGGGGAGAGCAAAATTA	59.737	43.478	0.00	0.00	0.00	1.40
816	1232	2.040412	AGAAGACGGGGAGAGCAAAATT	59.960	45.455	0.00	0.00	0.00	1.82
817	1233	1.630878	AGAAGACGGGGAGAGCAAAAT	59.369	47.619	0.00	0.00	0.00	1.82
860	1281	3.771577	GCTTTTATAGCTAGGGAGGCA	57.228	47.619	0.00	0.00	46.77	4.75
892	1324	0.960364	TGCGATGGGGAAGAAGCAAC	60.960	55.000	0.00	0.00	0.00	4.17
893	1325	0.960364	GTGCGATGGGGAAGAAGCAA	60.960	55.000	0.00	0.00	36.32	3.91
895	1327	0.678048	AAGTGCGATGGGGAAGAAGC	60.678	55.000	0.00	0.00	0.00	3.86
957	1393	4.883026	AACGAAGGTCGGTCGATG	57.117	55.556	2.38	0.00	45.59	3.84
973	1409	0.613260	ACAGAGTAATGCAGGGCGAA	59.387	50.000	0.00	0.00	0.00	4.70
987	1423	2.873609	CCAGACATCGTCTTCACAGAG	58.126	52.381	0.00	0.00	41.37	3.35
1131	1570	3.671702	GCTAGCTGCAAACTGATGAAACC	60.672	47.826	7.70	0.00	42.31	3.27
1157	1596	3.391160	ATGCTGACATGCAAGCGCG	62.391	57.895	0.00	0.00	46.61	6.86
1184	1623	4.680237	CCTGCGTCCGTGGCTTGA	62.680	66.667	0.00	0.00	0.00	3.02
1222	1661	0.179009	AAGCTTGCACTCTGGCTGAA	60.179	50.000	0.00	0.00	35.08	3.02
1269	1709	0.109532	TCCACCGATTCAGTGCCAAA	59.890	50.000	0.00	0.00	33.75	3.28
1274	1714	2.032550	GCATTCATCCACCGATTCAGTG	59.967	50.000	0.00	0.00	34.91	3.66
1276	1716	2.291365	TGCATTCATCCACCGATTCAG	58.709	47.619	0.00	0.00	0.00	3.02
1466	1910	2.835027	TGATGATGATGAGCAGTCAGC	58.165	47.619	0.00	0.00	46.19	4.26
1467	1911	3.675698	CGATGATGATGATGAGCAGTCAG	59.324	47.826	0.00	0.00	35.66	3.51
1470	1914	4.021368	TGATCGATGATGATGATGAGCAGT	60.021	41.667	0.54	0.00	0.00	4.40
1643	2096	4.410228	AGCATGCAGTCCTCCTTAATTAGA	59.590	41.667	21.98	0.00	0.00	2.10
1648	2101	3.118261	CCTTAGCATGCAGTCCTCCTTAA	60.118	47.826	21.98	5.31	0.00	1.85
1649	2102	2.435805	CCTTAGCATGCAGTCCTCCTTA	59.564	50.000	21.98	0.00	0.00	2.69
1650	2103	1.211457	CCTTAGCATGCAGTCCTCCTT	59.789	52.381	21.98	0.00	0.00	3.36
1651	2104	0.835941	CCTTAGCATGCAGTCCTCCT	59.164	55.000	21.98	0.00	0.00	3.69
1652	2105	0.817229	GCCTTAGCATGCAGTCCTCC	60.817	60.000	21.98	0.00	39.53	4.30
1653	2106	0.817229	GGCCTTAGCATGCAGTCCTC	60.817	60.000	21.98	3.93	42.56	3.71
1654	2107	1.225704	GGCCTTAGCATGCAGTCCT	59.774	57.895	21.98	0.16	42.56	3.85
1716	2169	1.972660	AACTTAGCTGGCGGCCCTAG	61.973	60.000	17.97	9.42	43.05	3.02
1717	2170	1.968050	GAACTTAGCTGGCGGCCCTA	61.968	60.000	17.97	8.77	43.05	3.53
1718	2171	3.330720	AACTTAGCTGGCGGCCCT	61.331	61.111	17.97	9.87	43.05	5.19
1719	2172	1.968050	TAGAACTTAGCTGGCGGCCC	61.968	60.000	17.97	1.16	43.05	5.80
1728	2181	8.238481	CTAATGAAGCAGCTATAGAACTTAGC	57.762	38.462	3.21	0.00	41.93	3.09
1748	2201	1.066605	GCATGCAAGGGTGAGCTAATG	59.933	52.381	14.21	0.00	0.00	1.90
1768	2221	1.961793	TGGAAACTGTGAGGAAACCG	58.038	50.000	0.00	0.00	0.00	4.44
1792	2245	2.805290	AATAAGAGAGAGGGGGAGGG	57.195	55.000	0.00	0.00	0.00	4.30
1809	2264	7.552330	ACCAAGTTTACACAAGCAAATGAAAAT	59.448	29.630	0.00	0.00	0.00	1.82
1812	2267	5.971763	ACCAAGTTTACACAAGCAAATGAA	58.028	33.333	0.00	0.00	0.00	2.57
1817	2272	6.256757	GCAAATAACCAAGTTTACACAAGCAA	59.743	34.615	0.00	0.00	0.00	3.91
1821	2276	6.868622	ACTGCAAATAACCAAGTTTACACAA	58.131	32.000	0.00	0.00	0.00	3.33
1929	2388	4.672587	TGGGTGATTGATACTGAGTAGC	57.327	45.455	0.04	0.04	0.00	3.58
2072	2813	4.995124	AGCCAAGAGTGTACGTATTACTG	58.005	43.478	16.96	6.84	0.00	2.74
2093	2834	1.654105	GGTAATCAACGAGCACACGAG	59.346	52.381	5.12	0.00	37.03	4.18
2096	2837	1.803334	TGGGTAATCAACGAGCACAC	58.197	50.000	0.00	0.00	0.00	3.82
2119	2860	0.038892	ATCGTGTGCGTCCGTTACTT	60.039	50.000	0.00	0.00	39.49	2.24
2169	2922	5.632244	TGAAGTATCAACAGTACTACGCA	57.368	39.130	0.00	0.00	32.34	5.24
2202	2960	1.120530	CCGGTAATCCTGTGCCTACT	58.879	55.000	0.00	0.00	0.00	2.57
2334	3106	4.481112	GCGGCGGCCTGTCAATTG	62.481	66.667	18.34	0.00	0.00	2.32
2369	3145	3.418068	GACTGGCGCACTGCTGAC	61.418	66.667	10.83	0.00	45.43	3.51
2428	3211	0.456482	CGTACGTACGTTCCATGCCA	60.456	55.000	33.95	2.14	44.13	4.92
2429	3212	2.281359	CGTACGTACGTTCCATGCC	58.719	57.895	33.95	5.28	44.13	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.