Multiple sequence alignment - TraesCS7B01G090300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G090300 chr7B 100.000 3357 0 0 1 3357 104562624 104565980 0.000000e+00 6200
1 TraesCS7B01G090300 chr7B 83.379 1101 136 28 936 2004 105510707 105509622 0.000000e+00 976
2 TraesCS7B01G090300 chr7B 81.306 1011 138 37 1035 2014 105520654 105519664 0.000000e+00 773
3 TraesCS7B01G090300 chr7D 94.996 2658 100 12 719 3357 139306027 139308670 0.000000e+00 4141
4 TraesCS7B01G090300 chr7D 80.800 1125 158 31 936 2016 140311592 140310482 0.000000e+00 828
5 TraesCS7B01G090300 chr7D 86.268 284 32 6 1165 1446 140317936 140317658 5.440000e-78 302
6 TraesCS7B01G090300 chr7D 81.329 316 51 4 1040 1354 56293189 56292881 2.000000e-62 250
7 TraesCS7B01G090300 chr7D 84.874 119 11 4 2739 2857 140312270 140312159 2.740000e-21 113
8 TraesCS7B01G090300 chr7A 93.814 1180 46 4 766 1936 139421837 139422998 0.000000e+00 1749
9 TraesCS7B01G090300 chr7A 93.119 683 35 5 2043 2720 139422997 139423672 0.000000e+00 990
10 TraesCS7B01G090300 chr7A 85.103 678 75 11 933 1600 140656435 140655774 0.000000e+00 669
11 TraesCS7B01G090300 chr7A 84.514 607 58 17 2753 3352 139423981 139424558 4.860000e-158 568
12 TraesCS7B01G090300 chr7A 76.768 396 68 15 1621 2004 140655700 140655317 2.040000e-47 200
13 TraesCS7B01G090300 chr2B 81.757 740 78 19 1 703 775483509 775482790 1.750000e-157 566
14 TraesCS7B01G090300 chr3A 79.845 774 73 24 1 698 728258749 728257983 3.890000e-134 488
15 TraesCS7B01G090300 chr1D 79.819 773 73 31 1 698 5709471 5708707 1.400000e-133 486
16 TraesCS7B01G090300 chr4A 82.663 323 53 1 1038 1360 670976681 670976362 1.970000e-72 283
17 TraesCS7B01G090300 chr4A 78.072 415 76 12 1040 1448 673046782 673046377 7.190000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G090300 chr7B 104562624 104565980 3356 False 6200.000000 6200 100.000000 1 3357 1 chr7B.!!$F1 3356
1 TraesCS7B01G090300 chr7B 105509622 105510707 1085 True 976.000000 976 83.379000 936 2004 1 chr7B.!!$R1 1068
2 TraesCS7B01G090300 chr7B 105519664 105520654 990 True 773.000000 773 81.306000 1035 2014 1 chr7B.!!$R2 979
3 TraesCS7B01G090300 chr7D 139306027 139308670 2643 False 4141.000000 4141 94.996000 719 3357 1 chr7D.!!$F1 2638
4 TraesCS7B01G090300 chr7D 140310482 140312270 1788 True 470.500000 828 82.837000 936 2857 2 chr7D.!!$R3 1921
5 TraesCS7B01G090300 chr7A 139421837 139424558 2721 False 1102.333333 1749 90.482333 766 3352 3 chr7A.!!$F1 2586
6 TraesCS7B01G090300 chr7A 140655317 140656435 1118 True 434.500000 669 80.935500 933 2004 2 chr7A.!!$R1 1071
7 TraesCS7B01G090300 chr2B 775482790 775483509 719 True 566.000000 566 81.757000 1 703 1 chr2B.!!$R1 702
8 TraesCS7B01G090300 chr3A 728257983 728258749 766 True 488.000000 488 79.845000 1 698 1 chr3A.!!$R1 697
9 TraesCS7B01G090300 chr1D 5708707 5709471 764 True 486.000000 486 79.819000 1 698 1 chr1D.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 784 0.039074 CTCGTCCACTCTTTCGCTGT 60.039 55.000 0.0 0.0 0.0 4.40 F
817 907 0.541998 TGGAGAAGAAGCCGGTGAGA 60.542 55.000 1.9 0.0 0.0 3.27 F
1602 1734 1.002134 CGCCCTCCTCACCACAAAT 60.002 57.895 0.0 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1734 0.030773 GCTGACGATATCGCTCCACA 59.969 55.0 24.59 14.88 44.43 4.17 R
1752 1934 0.390492 CGACCATCAGCAGCCTATCA 59.610 55.0 0.00 0.00 0.00 2.15 R
2880 3359 0.389817 GGAATTTCAAACTGGCCGCC 60.390 55.0 1.04 1.04 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.100004 CCGTCTACAACAGTACATTCATCTT 58.900 40.000 0.00 0.00 0.00 2.40
66 67 0.461163 ACGCACTAAGCACACACACA 60.461 50.000 0.00 0.00 46.13 3.72
67 68 0.042188 CGCACTAAGCACACACACAC 60.042 55.000 0.00 0.00 46.13 3.82
68 69 1.299541 GCACTAAGCACACACACACT 58.700 50.000 0.00 0.00 44.79 3.55
69 70 2.479837 GCACTAAGCACACACACACTA 58.520 47.619 0.00 0.00 44.79 2.74
71 72 3.498397 GCACTAAGCACACACACACTAAT 59.502 43.478 0.00 0.00 44.79 1.73
73 74 5.178623 GCACTAAGCACACACACACTAATTA 59.821 40.000 0.00 0.00 44.79 1.40
74 75 6.590357 CACTAAGCACACACACACTAATTAC 58.410 40.000 0.00 0.00 0.00 1.89
75 76 5.699458 ACTAAGCACACACACACTAATTACC 59.301 40.000 0.00 0.00 0.00 2.85
93 94 1.898574 CTTTTGTGCAGCCCGGAGT 60.899 57.895 0.73 0.00 0.00 3.85
96 97 2.731691 TTTGTGCAGCCCGGAGTCTC 62.732 60.000 0.73 0.00 0.00 3.36
111 112 0.318762 GTCTCTGGGTCGTCTTTGCT 59.681 55.000 0.00 0.00 0.00 3.91
142 143 2.507324 GACTCTGCCGTCGAAGCC 60.507 66.667 6.26 0.00 0.00 4.35
143 144 3.282745 GACTCTGCCGTCGAAGCCA 62.283 63.158 6.26 0.00 0.00 4.75
147 148 1.741401 CTGCCGTCGAAGCCATTCA 60.741 57.895 6.26 0.00 34.94 2.57
148 149 1.699656 CTGCCGTCGAAGCCATTCAG 61.700 60.000 6.26 0.00 34.94 3.02
154 175 3.317150 CGTCGAAGCCATTCAGCATATA 58.683 45.455 0.00 0.00 34.94 0.86
230 251 3.110705 ACTTCCACCAGATCTAGCACAT 58.889 45.455 0.00 0.00 0.00 3.21
259 280 1.282875 CGACGAGCACACAGTCTCA 59.717 57.895 0.00 0.00 33.10 3.27
274 295 2.036992 AGTCTCATCCATCGCCAGAATC 59.963 50.000 0.00 0.00 0.00 2.52
322 344 3.888323 GAGGAGATCTATGAGACAGCACA 59.112 47.826 0.00 0.00 0.00 4.57
349 371 4.226168 GGAGAAATCTACCATATGGGGGAG 59.774 50.000 25.55 18.09 42.91 4.30
469 524 1.488527 GTCAACACACTCGTCTGTCC 58.511 55.000 0.00 0.00 0.00 4.02
550 606 0.611714 ACCAACGGTACACCATCCTC 59.388 55.000 0.00 0.00 32.11 3.71
589 653 1.331138 CTAACTCCGTCGCCTCTACTG 59.669 57.143 0.00 0.00 0.00 2.74
595 659 2.052690 GTCGCCTCTACTGCAGGGA 61.053 63.158 19.93 14.40 0.00 4.20
596 660 2.052690 TCGCCTCTACTGCAGGGAC 61.053 63.158 19.93 5.08 0.00 4.46
602 666 1.192146 TCTACTGCAGGGACCCACAC 61.192 60.000 19.93 1.49 0.00 3.82
632 717 2.224606 CATGAGCCATAATTGCCGTCT 58.775 47.619 0.00 0.00 0.00 4.18
637 722 1.308998 CCATAATTGCCGTCTCCACC 58.691 55.000 0.00 0.00 0.00 4.61
638 723 1.308998 CATAATTGCCGTCTCCACCC 58.691 55.000 0.00 0.00 0.00 4.61
661 747 3.560453 GCCCTTGTACCATTGGTCTACAA 60.560 47.826 18.64 18.64 44.54 2.41
698 784 0.039074 CTCGTCCACTCTTTCGCTGT 60.039 55.000 0.00 0.00 0.00 4.40
703 789 1.964223 TCCACTCTTTCGCTGTTCTCT 59.036 47.619 0.00 0.00 0.00 3.10
704 790 2.029828 TCCACTCTTTCGCTGTTCTCTC 60.030 50.000 0.00 0.00 0.00 3.20
705 791 2.029470 CCACTCTTTCGCTGTTCTCTCT 60.029 50.000 0.00 0.00 0.00 3.10
706 792 3.553922 CCACTCTTTCGCTGTTCTCTCTT 60.554 47.826 0.00 0.00 0.00 2.85
707 793 4.054671 CACTCTTTCGCTGTTCTCTCTTT 58.945 43.478 0.00 0.00 0.00 2.52
708 794 5.223382 CACTCTTTCGCTGTTCTCTCTTTA 58.777 41.667 0.00 0.00 0.00 1.85
709 795 5.117897 CACTCTTTCGCTGTTCTCTCTTTAC 59.882 44.000 0.00 0.00 0.00 2.01
710 796 5.196341 TCTTTCGCTGTTCTCTCTTTACA 57.804 39.130 0.00 0.00 0.00 2.41
711 797 5.597806 TCTTTCGCTGTTCTCTCTTTACAA 58.402 37.500 0.00 0.00 0.00 2.41
712 798 6.046593 TCTTTCGCTGTTCTCTCTTTACAAA 58.953 36.000 0.00 0.00 0.00 2.83
713 799 5.907197 TTCGCTGTTCTCTCTTTACAAAG 57.093 39.130 0.00 0.00 37.36 2.77
714 800 4.307432 TCGCTGTTCTCTCTTTACAAAGG 58.693 43.478 2.04 0.00 36.67 3.11
715 801 3.433615 CGCTGTTCTCTCTTTACAAAGGG 59.566 47.826 2.04 0.00 37.86 3.95
716 802 4.642429 GCTGTTCTCTCTTTACAAAGGGA 58.358 43.478 4.30 4.30 42.98 4.20
717 803 5.249420 GCTGTTCTCTCTTTACAAAGGGAT 58.751 41.667 4.78 0.00 44.07 3.85
724 810 8.380742 TCTCTCTTTACAAAGGGATACAGAAT 57.619 34.615 4.78 0.00 44.07 2.40
735 821 6.591750 AGGGATACAGAATTACGGATACAG 57.408 41.667 0.00 0.00 39.74 2.74
759 845 1.657751 GATTTCTTGGCACCTCCCGC 61.658 60.000 0.00 0.00 0.00 6.13
807 897 1.140052 TCAACCGTTGCTGGAGAAGAA 59.860 47.619 6.37 0.00 0.00 2.52
817 907 0.541998 TGGAGAAGAAGCCGGTGAGA 60.542 55.000 1.90 0.00 0.00 3.27
840 930 1.219124 GCTGACGCTTGGATCTCCA 59.781 57.895 0.00 0.00 45.94 3.86
907 1006 1.873270 GCGGGATTGAACCAACCACC 61.873 60.000 0.00 0.00 0.00 4.61
930 1029 3.882888 AGATCCGCAAGAAAAACAACTGA 59.117 39.130 0.00 0.00 43.02 3.41
941 1040 9.023967 CAAGAAAAACAACTGACTAAATTGGAG 57.976 33.333 0.00 0.00 0.00 3.86
964 1063 2.489971 GACTCGTCCTCAGATCGATCT 58.510 52.381 22.32 22.32 37.72 2.75
1225 1324 3.239627 TTCCTCAGCCTCCCCGACT 62.240 63.158 0.00 0.00 0.00 4.18
1332 1434 1.300971 GCAGGTGCTCGCTGATGAAA 61.301 55.000 8.01 0.00 38.21 2.69
1344 1446 1.918957 CTGATGAAACCTTCCCCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
1448 1550 1.374758 CCGCTCTGGTGGAGTCAAC 60.375 63.158 0.00 0.00 45.39 3.18
1466 1583 1.289109 ACAAATTCCACGACCGCGAG 61.289 55.000 8.23 0.00 41.64 5.03
1602 1734 1.002134 CGCCCTCCTCACCACAAAT 60.002 57.895 0.00 0.00 0.00 2.32
1715 1897 3.386726 TGGTATGATCCTAACTTGACCGG 59.613 47.826 0.00 0.00 0.00 5.28
1752 1934 0.251077 ACTACCTTGTCGTCTCCGGT 60.251 55.000 0.00 0.00 33.95 5.28
1756 1938 1.100510 CCTTGTCGTCTCCGGTGATA 58.899 55.000 9.83 0.00 33.95 2.15
2089 2277 5.051153 GGCCCTTCGTTTCAAAAATAAACA 58.949 37.500 0.00 0.00 36.78 2.83
2211 2399 1.617947 GCGAAGGTCCATGGTCTCCT 61.618 60.000 12.58 14.79 0.00 3.69
2300 2488 7.482654 TCTTAGATGTTGCAGTATGTATTGC 57.517 36.000 1.07 1.07 39.31 3.56
2309 2497 5.059161 TGCAGTATGTATTGCTTCCATCTC 58.941 41.667 8.64 0.00 39.36 2.75
2880 3359 5.696724 ACTTTGATAGTTTCTGTCAGAACCG 59.303 40.000 14.98 0.00 33.26 4.44
3074 3556 6.620877 TTAATGTGGACTGTAGTGGAAGAT 57.379 37.500 0.00 0.00 0.00 2.40
3133 3615 8.481492 AATGTATGATTAAATTGCCAGGATGA 57.519 30.769 0.00 0.00 39.69 2.92
3135 3617 7.888424 TGTATGATTAAATTGCCAGGATGATG 58.112 34.615 0.00 0.00 39.69 3.07
3136 3618 6.989155 ATGATTAAATTGCCAGGATGATGT 57.011 33.333 0.00 0.00 39.69 3.06
3137 3619 6.795144 TGATTAAATTGCCAGGATGATGTT 57.205 33.333 0.00 0.00 39.69 2.71
3138 3620 6.808829 TGATTAAATTGCCAGGATGATGTTC 58.191 36.000 0.00 0.00 39.69 3.18
3140 3622 2.077687 ATTGCCAGGATGATGTTCCC 57.922 50.000 0.00 0.00 39.69 3.97
3141 3623 0.033208 TTGCCAGGATGATGTTCCCC 60.033 55.000 0.00 0.00 39.69 4.81
3142 3624 1.152673 GCCAGGATGATGTTCCCCC 60.153 63.158 0.00 0.00 39.69 5.40
3282 3767 6.914757 GTGCAGAGAACCAAGCAATTAATATC 59.085 38.462 0.00 0.00 38.91 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.728102 TGTTGTAGACGGGGCGCG 62.728 66.667 23.00 23.00 0.00 6.86
39 40 2.224090 TGTGCTTAGTGCGTTCCTGTTA 60.224 45.455 0.00 0.00 46.63 2.41
66 67 3.509967 GGGCTGCACAAAAGGTAATTAGT 59.490 43.478 0.50 0.00 0.00 2.24
67 68 3.427503 CGGGCTGCACAAAAGGTAATTAG 60.428 47.826 1.50 0.00 0.00 1.73
68 69 2.490115 CGGGCTGCACAAAAGGTAATTA 59.510 45.455 1.50 0.00 0.00 1.40
69 70 1.272212 CGGGCTGCACAAAAGGTAATT 59.728 47.619 1.50 0.00 0.00 1.40
71 72 1.175983 CCGGGCTGCACAAAAGGTAA 61.176 55.000 1.50 0.00 0.00 2.85
73 74 2.912025 CCGGGCTGCACAAAAGGT 60.912 61.111 1.50 0.00 0.00 3.50
74 75 2.597217 TCCGGGCTGCACAAAAGG 60.597 61.111 0.00 0.00 0.00 3.11
75 76 1.856265 GACTCCGGGCTGCACAAAAG 61.856 60.000 0.00 0.00 0.00 2.27
93 94 1.819288 CTAGCAAAGACGACCCAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
96 97 2.753452 TCTACTAGCAAAGACGACCCAG 59.247 50.000 0.00 0.00 0.00 4.45
111 112 3.380637 GGCAGAGTCCGAACAATCTACTA 59.619 47.826 0.00 0.00 0.00 1.82
172 193 2.238847 TACACGAGGTGGCTGATGGC 62.239 60.000 0.42 0.00 37.94 4.40
194 215 1.153168 AAGTAGCCGGCGAATGCAT 60.153 52.632 23.20 3.61 45.35 3.96
246 267 1.134877 CGATGGATGAGACTGTGTGCT 60.135 52.381 0.00 0.00 0.00 4.40
259 280 0.758734 TTCCGATTCTGGCGATGGAT 59.241 50.000 0.00 0.00 0.00 3.41
274 295 1.071471 AACTGCTGGTCAGGTTCCG 59.929 57.895 0.00 0.00 40.58 4.30
322 344 5.549619 CCCCATATGGTAGATTTCTCCTTCT 59.450 44.000 20.46 0.00 0.00 2.85
422 444 0.765903 ACCTCAGATCCCATGGCGAT 60.766 55.000 6.09 10.83 0.00 4.58
469 524 2.485122 GATTGCCGGGAAACGCTG 59.515 61.111 14.07 0.00 42.52 5.18
516 571 6.466889 ACCGTTGGTACCTGATCGATTCAG 62.467 50.000 14.36 14.34 42.32 3.02
536 592 0.381089 GAGTCGAGGATGGTGTACCG 59.619 60.000 0.00 0.00 39.43 4.02
589 653 1.562672 ATACTGGTGTGGGTCCCTGC 61.563 60.000 10.00 2.67 0.00 4.85
595 659 2.647299 TCATGGAAATACTGGTGTGGGT 59.353 45.455 0.00 0.00 0.00 4.51
596 660 3.282021 CTCATGGAAATACTGGTGTGGG 58.718 50.000 0.00 0.00 0.00 4.61
602 666 6.684686 CAATTATGGCTCATGGAAATACTGG 58.315 40.000 0.00 0.00 0.00 4.00
632 717 3.324108 GGTACAAGGGCGGGTGGA 61.324 66.667 0.00 0.00 0.00 4.02
661 747 2.415010 CTCGCGTGCTCCTGCTAT 59.585 61.111 5.77 0.00 40.48 2.97
662 748 4.498520 GCTCGCGTGCTCCTGCTA 62.499 66.667 24.65 0.00 40.48 3.49
698 784 7.792364 TCTGTATCCCTTTGTAAAGAGAGAA 57.208 36.000 5.95 0.00 38.28 2.87
703 789 7.767198 CCGTAATTCTGTATCCCTTTGTAAAGA 59.233 37.037 5.95 0.00 38.28 2.52
704 790 7.767198 TCCGTAATTCTGTATCCCTTTGTAAAG 59.233 37.037 0.00 0.00 35.79 1.85
705 791 7.622713 TCCGTAATTCTGTATCCCTTTGTAAA 58.377 34.615 0.00 0.00 0.00 2.01
706 792 7.185318 TCCGTAATTCTGTATCCCTTTGTAA 57.815 36.000 0.00 0.00 0.00 2.41
707 793 6.795144 TCCGTAATTCTGTATCCCTTTGTA 57.205 37.500 0.00 0.00 0.00 2.41
708 794 5.687166 TCCGTAATTCTGTATCCCTTTGT 57.313 39.130 0.00 0.00 0.00 2.83
709 795 7.214381 TGTATCCGTAATTCTGTATCCCTTTG 58.786 38.462 0.00 0.00 0.00 2.77
710 796 7.289317 TCTGTATCCGTAATTCTGTATCCCTTT 59.711 37.037 0.00 0.00 0.00 3.11
711 797 6.781014 TCTGTATCCGTAATTCTGTATCCCTT 59.219 38.462 0.00 0.00 0.00 3.95
712 798 6.312529 TCTGTATCCGTAATTCTGTATCCCT 58.687 40.000 0.00 0.00 0.00 4.20
713 799 6.585695 TCTGTATCCGTAATTCTGTATCCC 57.414 41.667 0.00 0.00 0.00 3.85
714 800 6.586844 GCTTCTGTATCCGTAATTCTGTATCC 59.413 42.308 0.00 0.00 0.00 2.59
715 801 6.305877 CGCTTCTGTATCCGTAATTCTGTATC 59.694 42.308 0.00 0.00 0.00 2.24
716 802 6.016527 TCGCTTCTGTATCCGTAATTCTGTAT 60.017 38.462 0.00 0.00 0.00 2.29
717 803 5.297527 TCGCTTCTGTATCCGTAATTCTGTA 59.702 40.000 0.00 0.00 0.00 2.74
724 810 5.258456 AGAAATCGCTTCTGTATCCGTAA 57.742 39.130 0.00 0.00 43.09 3.18
735 821 1.131315 GAGGTGCCAAGAAATCGCTTC 59.869 52.381 0.00 0.00 0.00 3.86
759 845 3.200593 GATGCGCTGGTGGAGCTG 61.201 66.667 9.73 0.00 46.64 4.24
807 897 1.220206 CAGCTTCATCTCACCGGCT 59.780 57.895 0.00 0.00 0.00 5.52
840 930 4.081420 CAGTTGAGACCAGGCTATGTACTT 60.081 45.833 0.00 0.00 0.00 2.24
907 1006 3.976942 CAGTTGTTTTTCTTGCGGATCTG 59.023 43.478 0.00 0.00 0.00 2.90
930 1029 1.549170 ACGAGTCCGCTCCAATTTAGT 59.451 47.619 0.00 0.00 38.49 2.24
964 1063 5.126707 GGGATACGTCCTCTTTAAACAGAGA 59.873 44.000 5.85 0.00 44.44 3.10
1013 1112 1.474478 GGAGAGACGAGCTTGATGACA 59.526 52.381 8.31 0.00 0.00 3.58
1063 1162 3.414700 GAGCACGACGCCCAACAG 61.415 66.667 0.00 0.00 44.04 3.16
1332 1434 3.003763 GTCGCAGAGGGGGAAGGT 61.004 66.667 0.00 0.00 40.51 3.50
1448 1550 1.011968 TCTCGCGGTCGTGGAATTTG 61.012 55.000 6.13 0.00 36.96 2.32
1466 1583 3.252215 CCCACGAGTAGAGATGATGACTC 59.748 52.174 0.00 0.00 35.91 3.36
1498 1615 1.016130 GTGGAGCACCTCGTGATGTG 61.016 60.000 0.71 1.47 35.23 3.21
1602 1734 0.030773 GCTGACGATATCGCTCCACA 59.969 55.000 24.59 14.88 44.43 4.17
1626 1796 1.203994 CCGTCGTCCAGGATACAAAGT 59.796 52.381 0.00 0.00 41.41 2.66
1630 1800 2.420568 GGCCGTCGTCCAGGATACA 61.421 63.158 0.00 0.00 41.41 2.29
1715 1897 0.444260 GTTCCGCTGCAAGTAGAAGC 59.556 55.000 0.00 0.00 46.27 3.86
1752 1934 0.390492 CGACCATCAGCAGCCTATCA 59.610 55.000 0.00 0.00 0.00 2.15
1756 1938 1.078848 GTTCGACCATCAGCAGCCT 60.079 57.895 0.00 0.00 0.00 4.58
2089 2277 2.043526 AGGCATTCTCACAATTTCCCCT 59.956 45.455 0.00 0.00 0.00 4.79
2300 2488 5.181245 TGCGAAAGTAAAAAGGAGATGGAAG 59.819 40.000 0.00 0.00 0.00 3.46
2309 2497 7.883229 AATTGGTATTGCGAAAGTAAAAAGG 57.117 32.000 0.00 0.00 39.68 3.11
2482 2680 1.073763 TGCTTATGTGGGTCTGCTTGT 59.926 47.619 0.00 0.00 0.00 3.16
2483 2681 1.825090 TGCTTATGTGGGTCTGCTTG 58.175 50.000 0.00 0.00 0.00 4.01
2620 2823 8.022550 AGTTTTGAACCTTTTGCATTTTTCTTG 58.977 29.630 0.00 0.00 0.00 3.02
2664 2867 8.079211 AGGTTTCTATTTAGCTCAGTATGTCA 57.921 34.615 0.00 0.00 37.40 3.58
2744 2947 5.481122 GCCCATTAAGTAAAACCCCACTAAA 59.519 40.000 0.00 0.00 0.00 1.85
2745 2948 5.018149 GCCCATTAAGTAAAACCCCACTAA 58.982 41.667 0.00 0.00 0.00 2.24
2880 3359 0.389817 GGAATTTCAAACTGGCCGCC 60.390 55.000 1.04 1.04 0.00 6.13
2955 3434 5.998363 AGGTTAGGAATCTCAAACTCAACAC 59.002 40.000 0.00 0.00 0.00 3.32
3059 3541 7.916450 GTGTAACTCATATCTTCCACTACAGTC 59.084 40.741 0.00 0.00 0.00 3.51
3282 3767 7.757173 TCTCTGTTTCATCAGAAGTAAAGATCG 59.243 37.037 0.00 0.00 42.73 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.