Multiple sequence alignment - TraesCS7B01G089900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G089900 chr7B 100.000 3114 0 0 1 3114 104320908 104324021 0.000000e+00 5751.0
1 TraesCS7B01G089900 chr7B 88.462 104 9 2 1990 2090 21278795 21278692 4.220000e-24 122.0
2 TraesCS7B01G089900 chr7B 78.947 171 30 6 1579 1745 21230501 21230333 9.130000e-21 111.0
3 TraesCS7B01G089900 chr7B 85.393 89 11 2 1779 1866 104322638 104322725 1.190000e-14 91.6
4 TraesCS7B01G089900 chr7B 85.393 89 11 2 1731 1818 104322686 104322773 1.190000e-14 91.6
5 TraesCS7B01G089900 chr7B 97.222 36 1 0 2571 2606 104323371 104323406 9.320000e-06 62.1
6 TraesCS7B01G089900 chr7B 97.222 36 1 0 2464 2499 104323478 104323513 9.320000e-06 62.1
7 TraesCS7B01G089900 chr7A 96.010 1529 40 7 1594 3114 139099187 139100702 0.000000e+00 2466.0
8 TraesCS7B01G089900 chr7A 95.424 590 23 1 943 1528 139098598 139099187 0.000000e+00 937.0
9 TraesCS7B01G089900 chr7A 86.538 104 11 2 1990 2090 79599216 79599113 9.130000e-21 111.0
10 TraesCS7B01G089900 chr7A 93.443 61 2 2 1803 1862 139099336 139099395 4.280000e-14 89.8
11 TraesCS7B01G089900 chr7A 97.222 36 1 0 2571 2606 139100048 139100083 9.320000e-06 62.1
12 TraesCS7B01G089900 chr7A 94.444 36 2 0 2464 2499 139100155 139100190 4.340000e-04 56.5
13 TraesCS7B01G089900 chr6A 93.151 365 8 3 332 680 258143625 258143988 1.280000e-143 520.0
14 TraesCS7B01G089900 chr6A 97.692 260 6 0 685 944 258144393 258144652 6.130000e-122 448.0
15 TraesCS7B01G089900 chr6A 83.281 317 49 3 2 317 519793925 519794238 3.930000e-74 289.0
16 TraesCS7B01G089900 chr6A 90.062 161 7 3 790 943 602683267 602683425 1.890000e-47 200.0
17 TraesCS7B01G089900 chr6A 90.476 147 9 4 539 680 602682004 602682150 4.100000e-44 189.0
18 TraesCS7B01G089900 chr6A 94.215 121 7 0 685 805 602683131 602683251 5.300000e-43 185.0
19 TraesCS7B01G089900 chr6A 94.828 116 6 0 692 807 155790956 155791071 6.860000e-42 182.0
20 TraesCS7B01G089900 chr6D 85.220 318 43 4 1 317 211975430 211975116 1.080000e-84 324.0
21 TraesCS7B01G089900 chr2A 85.093 322 39 9 1 317 82278304 82277987 1.390000e-83 320.0
22 TraesCS7B01G089900 chr2A 84.688 320 44 4 1 317 487907347 487907030 6.480000e-82 315.0
23 TraesCS7B01G089900 chr2A 90.123 162 7 3 790 944 557640717 557640876 5.270000e-48 202.0
24 TraesCS7B01G089900 chr2A 89.933 149 7 6 539 680 557639599 557639746 5.300000e-43 185.0
25 TraesCS7B01G089900 chr2A 91.129 124 10 1 685 807 557640580 557640703 1.920000e-37 167.0
26 TraesCS7B01G089900 chr2A 97.500 40 1 0 331 370 557640877 557640838 5.570000e-08 69.4
27 TraesCS7B01G089900 chr7D 84.906 318 45 3 1 317 327961479 327961164 5.010000e-83 318.0
28 TraesCS7B01G089900 chr7D 83.386 319 46 7 1 315 345375030 345374715 3.930000e-74 289.0
29 TraesCS7B01G089900 chr5A 84.062 320 44 7 1 317 100976614 100976929 5.050000e-78 302.0
30 TraesCS7B01G089900 chr5A 91.216 148 6 5 539 680 557323871 557324017 8.810000e-46 195.0
31 TraesCS7B01G089900 chr5A 84.967 153 18 3 792 944 368097027 368096880 1.930000e-32 150.0
32 TraesCS7B01G089900 chr4D 84.013 319 44 7 1 315 34014730 34015045 1.820000e-77 300.0
33 TraesCS7B01G089900 chr4D 83.386 319 48 5 2 317 250549598 250549282 1.090000e-74 291.0
34 TraesCS7B01G089900 chr3B 90.123 162 7 3 790 944 145511145 145511304 5.270000e-48 202.0
35 TraesCS7B01G089900 chr3B 88.387 155 10 6 533 680 145510021 145510174 2.470000e-41 180.0
36 TraesCS7B01G089900 chr3B 84.868 152 18 3 792 943 426995866 426995720 6.960000e-32 148.0
37 TraesCS7B01G089900 chr3B 97.500 40 1 0 331 370 145511305 145511266 5.570000e-08 69.4
38 TraesCS7B01G089900 chr1D 93.496 123 7 1 685 807 38562621 38562742 6.860000e-42 182.0
39 TraesCS7B01G089900 chr5B 92.800 125 7 1 685 807 502508888 502508764 2.470000e-41 180.0
40 TraesCS7B01G089900 chr5B 97.500 40 1 0 331 370 141577464 141577425 5.570000e-08 69.4
41 TraesCS7B01G089900 chr5B 95.238 42 2 0 333 374 125796720 125796679 2.000000e-07 67.6
42 TraesCS7B01G089900 chr4A 85.065 154 18 3 792 945 492348350 492348498 5.380000e-33 152.0
43 TraesCS7B01G089900 chr4A 97.436 39 1 0 332 370 492346580 492346618 2.000000e-07 67.6
44 TraesCS7B01G089900 chr4A 97.436 39 1 0 332 370 492348497 492348459 2.000000e-07 67.6
45 TraesCS7B01G089900 chr2B 84.967 153 18 3 792 944 214003628 214003775 1.930000e-32 150.0
46 TraesCS7B01G089900 chr2B 83.234 167 19 7 792 957 603199 603041 9.000000e-31 145.0
47 TraesCS7B01G089900 chr5D 94.521 73 1 3 611 680 15230756 15230828 3.280000e-20 110.0
48 TraesCS7B01G089900 chr4B 97.436 39 1 0 332 370 580381100 580381062 2.000000e-07 67.6
49 TraesCS7B01G089900 chr1B 97.436 39 1 0 332 370 527843381 527843343 2.000000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G089900 chr7B 104320908 104324021 3113 False 1211.68 5751 93.0460 1 3114 5 chr7B.!!$F1 3113
1 TraesCS7B01G089900 chr7A 139098598 139100702 2104 False 722.28 2466 95.3086 943 3114 5 chr7A.!!$F1 2171
2 TraesCS7B01G089900 chr6A 258143625 258144652 1027 False 484.00 520 95.4215 332 944 2 chr6A.!!$F3 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.036105 AACGGTTCGGTGGGGAATAC 60.036 55.0 0.00 0.00 0.00 1.89 F
301 302 0.107654 GTCACTGATAGTGGGCCCAC 60.108 60.0 42.82 42.82 45.94 4.61 F
1529 1950 0.321653 GAGGCCGGTGTCTGAAATGT 60.322 55.0 1.90 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 2175 0.034616 CGCCCTCCTCATCTTCATCC 59.965 60.0 0.0 0.0 0.00 3.51 R
1756 2177 0.467384 CACGCCCTCCTCATCTTCAT 59.533 55.0 0.0 0.0 0.00 2.57 R
2998 3426 0.611896 AGGGCTTACCACAATGGCAC 60.612 55.0 0.0 0.0 42.67 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.868522 AACTAGATGAAATTTGAGGAATGACA 57.131 30.769 0.00 0.00 0.00 3.58
49 50 8.503458 ACTAGATGAAATTTGAGGAATGACAG 57.497 34.615 0.00 0.00 0.00 3.51
50 51 8.324306 ACTAGATGAAATTTGAGGAATGACAGA 58.676 33.333 0.00 0.00 0.00 3.41
51 52 9.170734 CTAGATGAAATTTGAGGAATGACAGAA 57.829 33.333 0.00 0.00 0.00 3.02
52 53 8.413309 AGATGAAATTTGAGGAATGACAGAAA 57.587 30.769 0.00 0.00 0.00 2.52
53 54 8.863086 AGATGAAATTTGAGGAATGACAGAAAA 58.137 29.630 0.00 0.00 0.00 2.29
54 55 9.480053 GATGAAATTTGAGGAATGACAGAAAAA 57.520 29.630 0.00 0.00 0.00 1.94
55 56 8.647143 TGAAATTTGAGGAATGACAGAAAAAC 57.353 30.769 0.00 0.00 0.00 2.43
56 57 8.256605 TGAAATTTGAGGAATGACAGAAAAACA 58.743 29.630 0.00 0.00 0.00 2.83
57 58 9.097257 GAAATTTGAGGAATGACAGAAAAACAA 57.903 29.630 0.00 0.00 0.00 2.83
58 59 9.617523 AAATTTGAGGAATGACAGAAAAACAAT 57.382 25.926 0.00 0.00 0.00 2.71
59 60 8.822652 ATTTGAGGAATGACAGAAAAACAATC 57.177 30.769 0.00 0.00 0.00 2.67
60 61 6.957920 TGAGGAATGACAGAAAAACAATCA 57.042 33.333 0.00 0.00 0.00 2.57
61 62 7.345422 TGAGGAATGACAGAAAAACAATCAA 57.655 32.000 0.00 0.00 0.00 2.57
62 63 7.428020 TGAGGAATGACAGAAAAACAATCAAG 58.572 34.615 0.00 0.00 0.00 3.02
63 64 7.068593 TGAGGAATGACAGAAAAACAATCAAGT 59.931 33.333 0.00 0.00 0.00 3.16
64 65 7.428826 AGGAATGACAGAAAAACAATCAAGTC 58.571 34.615 0.00 0.00 0.00 3.01
65 66 7.068593 AGGAATGACAGAAAAACAATCAAGTCA 59.931 33.333 0.00 0.00 37.99 3.41
66 67 7.869429 GGAATGACAGAAAAACAATCAAGTCAT 59.131 33.333 0.00 0.00 41.95 3.06
67 68 9.252962 GAATGACAGAAAAACAATCAAGTCATT 57.747 29.630 18.57 18.57 46.09 2.57
68 69 9.603921 AATGACAGAAAAACAATCAAGTCATTT 57.396 25.926 15.41 6.41 43.90 2.32
69 70 8.410030 TGACAGAAAAACAATCAAGTCATTTG 57.590 30.769 0.00 0.00 38.17 2.32
70 71 7.492020 TGACAGAAAAACAATCAAGTCATTTGG 59.508 33.333 0.00 0.00 37.39 3.28
71 72 7.555087 ACAGAAAAACAATCAAGTCATTTGGA 58.445 30.769 0.00 0.00 37.39 3.53
72 73 7.707893 ACAGAAAAACAATCAAGTCATTTGGAG 59.292 33.333 0.00 0.00 37.39 3.86
73 74 7.707893 CAGAAAAACAATCAAGTCATTTGGAGT 59.292 33.333 0.00 0.00 37.39 3.85
74 75 8.260114 AGAAAAACAATCAAGTCATTTGGAGTT 58.740 29.630 0.00 0.00 39.80 3.01
83 84 6.783708 AAGTCATTTGGAGTTGTGGTTTAA 57.216 33.333 0.00 0.00 37.77 1.52
84 85 6.783708 AGTCATTTGGAGTTGTGGTTTAAA 57.216 33.333 0.00 0.00 0.00 1.52
85 86 7.176589 AGTCATTTGGAGTTGTGGTTTAAAA 57.823 32.000 0.00 0.00 0.00 1.52
86 87 7.616313 AGTCATTTGGAGTTGTGGTTTAAAAA 58.384 30.769 0.00 0.00 0.00 1.94
87 88 7.547722 AGTCATTTGGAGTTGTGGTTTAAAAAC 59.452 33.333 0.00 0.00 38.17 2.43
88 89 7.547722 GTCATTTGGAGTTGTGGTTTAAAAACT 59.452 33.333 3.25 3.25 38.89 2.66
89 90 8.750298 TCATTTGGAGTTGTGGTTTAAAAACTA 58.250 29.630 5.62 0.00 38.89 2.24
90 91 9.030301 CATTTGGAGTTGTGGTTTAAAAACTAG 57.970 33.333 5.62 0.00 38.89 2.57
91 92 7.941431 TTGGAGTTGTGGTTTAAAAACTAGA 57.059 32.000 0.00 0.00 38.89 2.43
92 93 7.562454 TGGAGTTGTGGTTTAAAAACTAGAG 57.438 36.000 0.00 0.00 38.89 2.43
93 94 6.038936 TGGAGTTGTGGTTTAAAAACTAGAGC 59.961 38.462 0.00 0.98 38.89 4.09
94 95 6.387041 AGTTGTGGTTTAAAAACTAGAGCC 57.613 37.500 0.00 0.00 38.89 4.70
95 96 5.889289 AGTTGTGGTTTAAAAACTAGAGCCA 59.111 36.000 0.00 0.00 38.89 4.75
96 97 6.039382 AGTTGTGGTTTAAAAACTAGAGCCAG 59.961 38.462 0.00 0.00 38.89 4.85
97 98 5.442391 TGTGGTTTAAAAACTAGAGCCAGT 58.558 37.500 0.00 0.00 38.89 4.00
98 99 5.529800 TGTGGTTTAAAAACTAGAGCCAGTC 59.470 40.000 0.00 0.00 38.89 3.51
99 100 5.529800 GTGGTTTAAAAACTAGAGCCAGTCA 59.470 40.000 0.00 0.00 38.89 3.41
100 101 6.038936 GTGGTTTAAAAACTAGAGCCAGTCAA 59.961 38.462 0.00 0.00 38.89 3.18
101 102 6.603997 TGGTTTAAAAACTAGAGCCAGTCAAA 59.396 34.615 0.00 0.00 38.89 2.69
102 103 7.139392 GGTTTAAAAACTAGAGCCAGTCAAAG 58.861 38.462 0.00 0.00 38.89 2.77
103 104 7.201794 GGTTTAAAAACTAGAGCCAGTCAAAGT 60.202 37.037 0.00 0.00 38.89 2.66
104 105 7.875327 TTAAAAACTAGAGCCAGTCAAAGTT 57.125 32.000 0.00 0.00 35.98 2.66
105 106 8.967664 TTAAAAACTAGAGCCAGTCAAAGTTA 57.032 30.769 0.00 0.00 34.30 2.24
106 107 7.497925 AAAAACTAGAGCCAGTCAAAGTTAG 57.502 36.000 0.00 0.00 34.30 2.34
107 108 4.810191 ACTAGAGCCAGTCAAAGTTAGG 57.190 45.455 0.00 0.00 0.00 2.69
108 109 3.515901 ACTAGAGCCAGTCAAAGTTAGGG 59.484 47.826 0.00 0.00 0.00 3.53
109 110 2.339769 AGAGCCAGTCAAAGTTAGGGT 58.660 47.619 0.00 0.00 0.00 4.34
110 111 2.303311 AGAGCCAGTCAAAGTTAGGGTC 59.697 50.000 0.00 0.00 44.84 4.46
111 112 2.038557 GAGCCAGTCAAAGTTAGGGTCA 59.961 50.000 0.00 0.00 44.13 4.02
112 113 2.441750 AGCCAGTCAAAGTTAGGGTCAA 59.558 45.455 0.00 0.00 0.00 3.18
113 114 3.117663 AGCCAGTCAAAGTTAGGGTCAAA 60.118 43.478 0.00 0.00 0.00 2.69
114 115 3.826729 GCCAGTCAAAGTTAGGGTCAAAT 59.173 43.478 0.00 0.00 0.00 2.32
115 116 4.082733 GCCAGTCAAAGTTAGGGTCAAATC 60.083 45.833 0.00 0.00 0.00 2.17
116 117 5.316987 CCAGTCAAAGTTAGGGTCAAATCT 58.683 41.667 0.00 0.00 0.00 2.40
117 118 5.182001 CCAGTCAAAGTTAGGGTCAAATCTG 59.818 44.000 0.00 0.00 0.00 2.90
118 119 5.182001 CAGTCAAAGTTAGGGTCAAATCTGG 59.818 44.000 0.00 0.00 0.00 3.86
119 120 5.073144 AGTCAAAGTTAGGGTCAAATCTGGA 59.927 40.000 0.00 0.00 0.00 3.86
120 121 5.946377 GTCAAAGTTAGGGTCAAATCTGGAT 59.054 40.000 0.00 0.00 0.00 3.41
121 122 6.434340 GTCAAAGTTAGGGTCAAATCTGGATT 59.566 38.462 0.00 0.00 0.00 3.01
122 123 7.010160 TCAAAGTTAGGGTCAAATCTGGATTT 58.990 34.615 3.06 3.06 41.33 2.17
123 124 8.167392 TCAAAGTTAGGGTCAAATCTGGATTTA 58.833 33.333 8.04 0.00 38.84 1.40
124 125 8.802267 CAAAGTTAGGGTCAAATCTGGATTTAA 58.198 33.333 8.04 0.00 38.84 1.52
125 126 8.950007 AAGTTAGGGTCAAATCTGGATTTAAA 57.050 30.769 8.04 0.00 38.84 1.52
126 127 9.547279 AAGTTAGGGTCAAATCTGGATTTAAAT 57.453 29.630 0.00 0.00 38.84 1.40
127 128 9.547279 AGTTAGGGTCAAATCTGGATTTAAATT 57.453 29.630 1.43 0.00 38.84 1.82
155 156 2.855660 AAAAGAAAACGGTTCGGTGG 57.144 45.000 0.00 0.00 0.00 4.61
156 157 1.026584 AAAGAAAACGGTTCGGTGGG 58.973 50.000 0.00 0.00 0.00 4.61
157 158 0.820482 AAGAAAACGGTTCGGTGGGG 60.820 55.000 0.00 0.00 0.00 4.96
158 159 1.227913 GAAAACGGTTCGGTGGGGA 60.228 57.895 0.00 0.00 0.00 4.81
159 160 0.818852 GAAAACGGTTCGGTGGGGAA 60.819 55.000 0.00 0.00 0.00 3.97
160 161 0.178984 AAAACGGTTCGGTGGGGAAT 60.179 50.000 0.00 0.00 0.00 3.01
161 162 0.691904 AAACGGTTCGGTGGGGAATA 59.308 50.000 0.00 0.00 0.00 1.75
162 163 0.036105 AACGGTTCGGTGGGGAATAC 60.036 55.000 0.00 0.00 0.00 1.89
163 164 1.519898 CGGTTCGGTGGGGAATACG 60.520 63.158 0.00 0.00 0.00 3.06
164 165 1.816679 GGTTCGGTGGGGAATACGC 60.817 63.158 0.00 0.00 0.00 4.42
165 166 1.219935 GTTCGGTGGGGAATACGCT 59.780 57.895 0.00 0.00 0.00 5.07
166 167 0.392060 GTTCGGTGGGGAATACGCTT 60.392 55.000 0.00 0.00 0.00 4.68
167 168 0.325602 TTCGGTGGGGAATACGCTTT 59.674 50.000 0.00 0.00 0.00 3.51
168 169 0.108041 TCGGTGGGGAATACGCTTTC 60.108 55.000 0.00 0.00 0.00 2.62
169 170 0.391927 CGGTGGGGAATACGCTTTCA 60.392 55.000 1.02 0.00 0.00 2.69
170 171 1.379527 GGTGGGGAATACGCTTTCAG 58.620 55.000 1.02 0.00 0.00 3.02
171 172 1.065709 GGTGGGGAATACGCTTTCAGA 60.066 52.381 1.02 0.00 0.00 3.27
172 173 2.617021 GGTGGGGAATACGCTTTCAGAA 60.617 50.000 1.02 0.00 0.00 3.02
173 174 3.279434 GTGGGGAATACGCTTTCAGAAT 58.721 45.455 1.02 0.00 0.00 2.40
174 175 4.448210 GTGGGGAATACGCTTTCAGAATA 58.552 43.478 1.02 0.00 0.00 1.75
175 176 4.511826 GTGGGGAATACGCTTTCAGAATAG 59.488 45.833 1.02 0.00 0.00 1.73
176 177 4.065789 GGGGAATACGCTTTCAGAATAGG 58.934 47.826 1.02 0.00 0.00 2.57
177 178 4.202326 GGGGAATACGCTTTCAGAATAGGA 60.202 45.833 1.02 0.00 0.00 2.94
178 179 5.365619 GGGAATACGCTTTCAGAATAGGAA 58.634 41.667 1.02 0.00 0.00 3.36
179 180 5.467063 GGGAATACGCTTTCAGAATAGGAAG 59.533 44.000 1.02 0.00 0.00 3.46
180 181 6.281405 GGAATACGCTTTCAGAATAGGAAGA 58.719 40.000 1.02 0.00 0.00 2.87
181 182 6.201234 GGAATACGCTTTCAGAATAGGAAGAC 59.799 42.308 1.02 0.00 0.00 3.01
182 183 3.512680 ACGCTTTCAGAATAGGAAGACG 58.487 45.455 0.00 0.00 33.43 4.18
183 184 3.056749 ACGCTTTCAGAATAGGAAGACGT 60.057 43.478 0.00 0.00 34.76 4.34
184 185 4.157289 ACGCTTTCAGAATAGGAAGACGTA 59.843 41.667 0.00 0.00 36.51 3.57
185 186 4.499758 CGCTTTCAGAATAGGAAGACGTAC 59.500 45.833 0.00 0.00 0.00 3.67
186 187 5.652518 GCTTTCAGAATAGGAAGACGTACT 58.347 41.667 0.00 0.00 0.00 2.73
187 188 5.744819 GCTTTCAGAATAGGAAGACGTACTC 59.255 44.000 0.00 0.00 0.00 2.59
188 189 5.831702 TTCAGAATAGGAAGACGTACTCC 57.168 43.478 7.22 7.22 0.00 3.85
189 190 4.205587 TCAGAATAGGAAGACGTACTCCC 58.794 47.826 10.98 0.00 0.00 4.30
190 191 3.003482 CAGAATAGGAAGACGTACTCCCG 59.997 52.174 10.98 0.00 0.00 5.14
191 192 2.725221 ATAGGAAGACGTACTCCCGT 57.275 50.000 10.98 0.00 45.18 5.28
192 193 1.742761 TAGGAAGACGTACTCCCGTG 58.257 55.000 10.98 0.00 41.98 4.94
193 194 0.251077 AGGAAGACGTACTCCCGTGT 60.251 55.000 10.98 0.00 41.98 4.49
194 195 0.600057 GGAAGACGTACTCCCGTGTT 59.400 55.000 4.36 0.00 45.51 3.32
195 196 1.000171 GGAAGACGTACTCCCGTGTTT 60.000 52.381 4.36 0.00 43.29 2.83
196 197 2.228822 GGAAGACGTACTCCCGTGTTTA 59.771 50.000 4.36 0.00 43.29 2.01
197 198 2.997485 AGACGTACTCCCGTGTTTAC 57.003 50.000 0.00 0.00 41.98 2.01
198 199 4.206801 GAAGACGTACTCCCGTGTTTACG 61.207 52.174 0.00 0.00 43.29 3.18
207 208 3.850207 CGTGTTTACGCTTCCATCG 57.150 52.632 0.00 0.00 44.11 3.84
208 209 1.342555 CGTGTTTACGCTTCCATCGA 58.657 50.000 0.00 0.00 44.11 3.59
209 210 1.924524 CGTGTTTACGCTTCCATCGAT 59.075 47.619 0.00 0.00 44.11 3.59
210 211 2.347452 CGTGTTTACGCTTCCATCGATT 59.653 45.455 0.00 0.00 44.11 3.34
211 212 3.548668 CGTGTTTACGCTTCCATCGATTA 59.451 43.478 0.00 0.00 44.11 1.75
212 213 4.547587 CGTGTTTACGCTTCCATCGATTAC 60.548 45.833 0.00 0.00 44.11 1.89
213 214 3.548668 TGTTTACGCTTCCATCGATTACG 59.451 43.478 0.00 0.00 41.26 3.18
214 215 1.762419 TACGCTTCCATCGATTACGC 58.238 50.000 0.00 0.00 39.58 4.42
215 216 1.206745 ACGCTTCCATCGATTACGCG 61.207 55.000 20.27 20.27 44.06 6.01
216 217 1.206745 CGCTTCCATCGATTACGCGT 61.207 55.000 19.17 19.17 39.58 6.01
217 218 0.928229 GCTTCCATCGATTACGCGTT 59.072 50.000 20.78 0.00 39.58 4.84
218 219 1.071436 GCTTCCATCGATTACGCGTTC 60.071 52.381 20.78 9.36 39.58 3.95
219 220 2.190161 CTTCCATCGATTACGCGTTCA 58.810 47.619 20.78 4.87 39.58 3.18
220 221 1.835121 TCCATCGATTACGCGTTCAG 58.165 50.000 20.78 7.25 39.58 3.02
221 222 1.402613 TCCATCGATTACGCGTTCAGA 59.597 47.619 20.78 12.97 39.58 3.27
222 223 2.159352 TCCATCGATTACGCGTTCAGAA 60.159 45.455 20.78 5.68 39.58 3.02
223 224 2.034842 CCATCGATTACGCGTTCAGAAC 60.035 50.000 20.78 2.85 39.58 3.01
224 225 2.334971 TCGATTACGCGTTCAGAACA 57.665 45.000 20.78 0.00 39.58 3.18
225 226 2.247637 TCGATTACGCGTTCAGAACAG 58.752 47.619 20.78 8.86 39.58 3.16
226 227 1.320555 CGATTACGCGTTCAGAACAGG 59.679 52.381 20.78 6.57 0.00 4.00
227 228 1.659098 GATTACGCGTTCAGAACAGGG 59.341 52.381 20.78 14.90 0.00 4.45
228 229 0.675083 TTACGCGTTCAGAACAGGGA 59.325 50.000 20.78 5.58 0.00 4.20
229 230 0.675083 TACGCGTTCAGAACAGGGAA 59.325 50.000 20.78 0.00 0.00 3.97
230 231 0.600255 ACGCGTTCAGAACAGGGAAG 60.600 55.000 20.81 4.78 0.00 3.46
231 232 0.319555 CGCGTTCAGAACAGGGAAGA 60.320 55.000 13.82 0.00 0.00 2.87
232 233 1.149148 GCGTTCAGAACAGGGAAGAC 58.851 55.000 13.82 0.00 0.00 3.01
233 234 1.540363 GCGTTCAGAACAGGGAAGACA 60.540 52.381 13.82 0.00 0.00 3.41
234 235 2.872038 GCGTTCAGAACAGGGAAGACAT 60.872 50.000 13.82 0.00 0.00 3.06
235 236 3.616560 GCGTTCAGAACAGGGAAGACATA 60.617 47.826 13.82 0.00 0.00 2.29
236 237 4.759782 CGTTCAGAACAGGGAAGACATAT 58.240 43.478 13.82 0.00 0.00 1.78
237 238 5.178797 CGTTCAGAACAGGGAAGACATATT 58.821 41.667 13.82 0.00 0.00 1.28
238 239 5.063944 CGTTCAGAACAGGGAAGACATATTG 59.936 44.000 13.82 0.00 0.00 1.90
239 240 5.762179 TCAGAACAGGGAAGACATATTGT 57.238 39.130 0.00 0.00 0.00 2.71
251 252 4.308899 GACATATTGTCCAGAGTACGCT 57.691 45.455 0.00 0.00 41.37 5.07
252 253 4.683832 GACATATTGTCCAGAGTACGCTT 58.316 43.478 0.00 0.00 41.37 4.68
253 254 4.683832 ACATATTGTCCAGAGTACGCTTC 58.316 43.478 0.00 0.00 0.00 3.86
254 255 2.674796 ATTGTCCAGAGTACGCTTCC 57.325 50.000 0.00 0.00 0.00 3.46
255 256 1.334160 TTGTCCAGAGTACGCTTCCA 58.666 50.000 0.00 0.00 0.00 3.53
256 257 0.601558 TGTCCAGAGTACGCTTCCAC 59.398 55.000 0.00 0.00 0.00 4.02
257 258 0.889306 GTCCAGAGTACGCTTCCACT 59.111 55.000 0.00 0.00 0.00 4.00
258 259 1.272769 GTCCAGAGTACGCTTCCACTT 59.727 52.381 0.00 0.00 0.00 3.16
259 260 2.490903 GTCCAGAGTACGCTTCCACTTA 59.509 50.000 0.00 0.00 0.00 2.24
260 261 2.753452 TCCAGAGTACGCTTCCACTTAG 59.247 50.000 0.00 0.00 0.00 2.18
261 262 2.159226 CCAGAGTACGCTTCCACTTAGG 60.159 54.545 0.00 0.00 39.47 2.69
269 270 3.599584 TCCACTTAGGACGAGCCG 58.400 61.111 0.00 0.00 43.07 5.52
270 271 2.050350 TCCACTTAGGACGAGCCGG 61.050 63.158 0.00 0.00 43.07 6.13
271 272 2.202756 CACTTAGGACGAGCCGGC 60.203 66.667 21.89 21.89 43.43 6.13
272 273 3.823330 ACTTAGGACGAGCCGGCG 61.823 66.667 23.20 10.77 43.43 6.46
274 275 4.124351 TTAGGACGAGCCGGCGTG 62.124 66.667 23.20 20.15 45.72 5.34
287 288 4.626081 GCGTGGTGCTGGGTCACT 62.626 66.667 0.00 0.00 41.73 3.41
288 289 2.666190 CGTGGTGCTGGGTCACTG 60.666 66.667 0.00 0.00 37.16 3.66
289 290 2.828868 GTGGTGCTGGGTCACTGA 59.171 61.111 0.00 0.00 37.16 3.41
290 291 1.376466 GTGGTGCTGGGTCACTGAT 59.624 57.895 0.00 0.00 37.16 2.90
291 292 0.613260 GTGGTGCTGGGTCACTGATA 59.387 55.000 0.00 0.00 37.16 2.15
292 293 0.904649 TGGTGCTGGGTCACTGATAG 59.095 55.000 0.00 0.00 37.16 2.08
293 294 0.905357 GGTGCTGGGTCACTGATAGT 59.095 55.000 0.00 0.00 37.16 2.12
295 296 0.904649 TGCTGGGTCACTGATAGTGG 59.095 55.000 8.91 0.00 45.94 4.00
296 297 0.179000 GCTGGGTCACTGATAGTGGG 59.821 60.000 8.91 0.00 45.94 4.61
297 298 0.179000 CTGGGTCACTGATAGTGGGC 59.821 60.000 8.91 3.29 45.94 5.36
298 299 1.271840 TGGGTCACTGATAGTGGGCC 61.272 60.000 8.91 0.00 45.94 5.80
299 300 1.527370 GGTCACTGATAGTGGGCCC 59.473 63.158 17.59 17.59 45.94 5.80
300 301 1.271840 GGTCACTGATAGTGGGCCCA 61.272 60.000 24.45 24.45 45.94 5.36
301 302 0.107654 GTCACTGATAGTGGGCCCAC 60.108 60.000 42.82 42.82 45.94 4.61
302 303 1.271840 TCACTGATAGTGGGCCCACC 61.272 60.000 44.71 31.88 45.94 4.61
303 304 3.673664 TCACTGATAGTGGGCCCACCT 62.674 57.143 44.71 34.33 45.94 4.00
322 323 3.580319 ACCCCCTGGTCAAGCCAC 61.580 66.667 0.00 0.00 43.06 5.01
323 324 4.722700 CCCCCTGGTCAAGCCACG 62.723 72.222 0.00 0.00 43.61 4.94
326 327 4.335647 CCTGGTCAAGCCACGCCT 62.336 66.667 0.00 0.00 43.61 5.52
327 328 2.743928 CTGGTCAAGCCACGCCTC 60.744 66.667 0.00 0.00 43.61 4.70
328 329 3.535629 CTGGTCAAGCCACGCCTCA 62.536 63.158 0.00 0.00 43.61 3.86
329 330 2.045926 GGTCAAGCCACGCCTCAT 60.046 61.111 0.00 0.00 37.17 2.90
330 331 2.109126 GGTCAAGCCACGCCTCATC 61.109 63.158 0.00 0.00 37.17 2.92
479 495 2.660064 CCAGCCTAGCCGTTCACCT 61.660 63.158 0.00 0.00 0.00 4.00
490 506 1.441738 CGTTCACCTGATGCATCACA 58.558 50.000 25.42 6.60 32.50 3.58
491 507 1.129251 CGTTCACCTGATGCATCACAC 59.871 52.381 25.42 14.65 32.50 3.82
500 516 1.821332 TGCATCACACGGTTGCACA 60.821 52.632 1.29 0.00 44.94 4.57
515 531 6.016610 ACGGTTGCACAAGTCAACTAATTAAT 60.017 34.615 5.94 0.00 42.40 1.40
517 533 6.586082 GGTTGCACAAGTCAACTAATTAATGG 59.414 38.462 5.94 0.00 42.40 3.16
533 549 9.757227 CTAATTAATGGTTTCCTTGTGTTCAAA 57.243 29.630 0.00 0.00 32.87 2.69
953 1370 3.781307 CGGTTCCGCCTCATCCCA 61.781 66.667 0.00 0.00 34.25 4.37
960 1377 1.670590 CGCCTCATCCCATCCTCTC 59.329 63.158 0.00 0.00 0.00 3.20
1004 1421 1.033746 CGATCCAAGGCAAGCATGGT 61.034 55.000 13.54 0.00 35.66 3.55
1008 1425 0.323725 CCAAGGCAAGCATGGTAGGT 60.324 55.000 0.00 0.00 0.00 3.08
1076 1493 0.955428 GTTGCCGGACAGATGAAGCA 60.955 55.000 5.05 0.00 0.00 3.91
1080 1497 1.081892 CCGGACAGATGAAGCAGTTG 58.918 55.000 0.00 0.00 0.00 3.16
1117 1534 1.862147 CTGTTCCGCGACTACGACG 60.862 63.158 8.23 0.00 42.66 5.12
1120 1537 2.316867 TTCCGCGACTACGACGTCA 61.317 57.895 17.16 0.00 42.66 4.35
1152 1569 2.311701 CGCGTTGGCCGAAGTTGTA 61.312 57.895 7.82 0.00 39.56 2.41
1157 1574 3.634283 CGTTGGCCGAAGTTGTAAATTT 58.366 40.909 0.00 0.00 39.56 1.82
1181 1598 2.681848 CGTACGAGGTACAGATGGAAGT 59.318 50.000 10.44 0.00 38.77 3.01
1191 1608 6.497259 AGGTACAGATGGAAGTCTTCACTAAA 59.503 38.462 14.49 0.00 30.14 1.85
1198 1615 3.808174 GGAAGTCTTCACTAAAGTGCGTT 59.192 43.478 14.49 0.00 45.25 4.84
1207 1624 7.439955 TCTTCACTAAAGTGCGTTCAATTTCTA 59.560 33.333 5.21 0.00 45.25 2.10
1250 1671 4.199310 GGTTCATCCGATTTGATCCTTCA 58.801 43.478 0.00 0.00 32.51 3.02
1298 1719 4.162690 CCAGTCGGTGGCTAGGGC 62.163 72.222 0.00 0.00 40.39 5.19
1353 1774 3.714798 AGTCTTAAAGTTCTGGTGGTGGA 59.285 43.478 0.00 0.00 0.00 4.02
1413 1834 2.811101 CAGAGGTAGCCGCTGGAG 59.189 66.667 2.16 0.00 45.47 3.86
1424 1845 0.467384 CCGCTGGAGAAGATGGTGAT 59.533 55.000 0.00 0.00 0.00 3.06
1527 1948 1.299976 GGAGGCCGGTGTCTGAAAT 59.700 57.895 1.90 0.00 0.00 2.17
1528 1949 1.026718 GGAGGCCGGTGTCTGAAATG 61.027 60.000 1.90 0.00 0.00 2.32
1529 1950 0.321653 GAGGCCGGTGTCTGAAATGT 60.322 55.000 1.90 0.00 0.00 2.71
1530 1951 0.321653 AGGCCGGTGTCTGAAATGTC 60.322 55.000 1.90 0.00 0.00 3.06
1531 1952 0.321653 GGCCGGTGTCTGAAATGTCT 60.322 55.000 1.90 0.00 0.00 3.41
1532 1953 0.798776 GCCGGTGTCTGAAATGTCTG 59.201 55.000 1.90 0.00 0.00 3.51
1533 1954 1.878102 GCCGGTGTCTGAAATGTCTGT 60.878 52.381 1.90 0.00 0.00 3.41
1534 1955 2.494059 CCGGTGTCTGAAATGTCTGTT 58.506 47.619 0.00 0.00 0.00 3.16
1535 1956 2.224079 CCGGTGTCTGAAATGTCTGTTG 59.776 50.000 0.00 0.00 0.00 3.33
1536 1957 2.872245 CGGTGTCTGAAATGTCTGTTGT 59.128 45.455 0.00 0.00 0.00 3.32
1537 1958 3.312421 CGGTGTCTGAAATGTCTGTTGTT 59.688 43.478 0.00 0.00 0.00 2.83
1538 1959 4.509970 CGGTGTCTGAAATGTCTGTTGTTA 59.490 41.667 0.00 0.00 0.00 2.41
1539 1960 5.179368 CGGTGTCTGAAATGTCTGTTGTTAT 59.821 40.000 0.00 0.00 0.00 1.89
1540 1961 6.603095 GGTGTCTGAAATGTCTGTTGTTATC 58.397 40.000 0.00 0.00 0.00 1.75
1541 1962 6.204688 GGTGTCTGAAATGTCTGTTGTTATCA 59.795 38.462 0.00 0.00 0.00 2.15
1542 1963 7.293745 GTGTCTGAAATGTCTGTTGTTATCAG 58.706 38.462 0.00 0.00 35.53 2.90
1543 1964 6.992123 TGTCTGAAATGTCTGTTGTTATCAGT 59.008 34.615 0.00 0.00 35.66 3.41
1544 1965 7.171508 TGTCTGAAATGTCTGTTGTTATCAGTC 59.828 37.037 0.00 0.00 35.66 3.51
1545 1966 7.171508 GTCTGAAATGTCTGTTGTTATCAGTCA 59.828 37.037 0.00 0.00 36.04 3.41
1546 1967 7.879677 TCTGAAATGTCTGTTGTTATCAGTCAT 59.120 33.333 0.00 0.00 40.96 3.06
1547 1968 8.394971 TGAAATGTCTGTTGTTATCAGTCATT 57.605 30.769 10.66 10.66 45.60 2.57
1550 1971 7.984422 ATGTCTGTTGTTATCAGTCATTTGA 57.016 32.000 0.00 0.00 38.02 2.69
1551 1972 7.800155 TGTCTGTTGTTATCAGTCATTTGAA 57.200 32.000 0.00 0.00 34.86 2.69
1552 1973 7.639039 TGTCTGTTGTTATCAGTCATTTGAAC 58.361 34.615 0.00 0.00 34.86 3.18
1553 1974 7.498900 TGTCTGTTGTTATCAGTCATTTGAACT 59.501 33.333 0.00 0.00 34.86 3.01
1554 1975 7.800380 GTCTGTTGTTATCAGTCATTTGAACTG 59.200 37.037 0.00 0.00 34.86 3.16
1555 1976 6.437928 TGTTGTTATCAGTCATTTGAACTGC 58.562 36.000 0.00 0.00 0.00 4.40
1556 1977 6.039159 TGTTGTTATCAGTCATTTGAACTGCA 59.961 34.615 0.00 0.00 0.00 4.41
1557 1978 6.822667 TGTTATCAGTCATTTGAACTGCAT 57.177 33.333 0.00 0.00 0.00 3.96
1558 1979 7.218228 TGTTATCAGTCATTTGAACTGCATT 57.782 32.000 0.00 0.00 0.00 3.56
1559 1980 7.307694 TGTTATCAGTCATTTGAACTGCATTC 58.692 34.615 0.00 0.00 37.88 2.67
1560 1981 4.408993 TCAGTCATTTGAACTGCATTCG 57.591 40.909 0.00 0.00 40.56 3.34
1561 1982 3.189080 TCAGTCATTTGAACTGCATTCGG 59.811 43.478 0.00 0.00 40.56 4.30
1562 1983 3.189080 CAGTCATTTGAACTGCATTCGGA 59.811 43.478 0.00 0.00 40.56 4.55
1563 1984 3.820467 AGTCATTTGAACTGCATTCGGAA 59.180 39.130 0.00 0.00 40.56 4.30
1564 1985 4.460382 AGTCATTTGAACTGCATTCGGAAT 59.540 37.500 0.00 0.00 40.56 3.01
1565 1986 4.795278 GTCATTTGAACTGCATTCGGAATC 59.205 41.667 0.00 0.00 40.56 2.52
1566 1987 3.848272 TTTGAACTGCATTCGGAATCC 57.152 42.857 0.00 0.00 40.56 3.01
1567 1988 2.488204 TGAACTGCATTCGGAATCCA 57.512 45.000 0.00 0.00 40.56 3.41
1568 1989 2.789213 TGAACTGCATTCGGAATCCAA 58.211 42.857 0.00 0.00 40.56 3.53
1569 1990 2.487762 TGAACTGCATTCGGAATCCAAC 59.512 45.455 0.00 0.00 40.56 3.77
1570 1991 1.463674 ACTGCATTCGGAATCCAACC 58.536 50.000 0.00 0.00 0.00 3.77
1571 1992 0.740737 CTGCATTCGGAATCCAACCC 59.259 55.000 0.00 0.00 0.00 4.11
1572 1993 0.331278 TGCATTCGGAATCCAACCCT 59.669 50.000 0.00 0.00 0.00 4.34
1573 1994 1.562008 TGCATTCGGAATCCAACCCTA 59.438 47.619 0.00 0.00 0.00 3.53
1574 1995 2.025793 TGCATTCGGAATCCAACCCTAA 60.026 45.455 0.00 0.00 0.00 2.69
1575 1996 3.222603 GCATTCGGAATCCAACCCTAAT 58.777 45.455 0.00 0.00 0.00 1.73
1576 1997 3.253432 GCATTCGGAATCCAACCCTAATC 59.747 47.826 0.00 0.00 0.00 1.75
1577 1998 3.570912 TTCGGAATCCAACCCTAATCC 57.429 47.619 0.00 0.00 0.00 3.01
1578 1999 2.771688 TCGGAATCCAACCCTAATCCT 58.228 47.619 0.00 0.00 0.00 3.24
1579 2000 3.120108 TCGGAATCCAACCCTAATCCTT 58.880 45.455 0.00 0.00 0.00 3.36
1580 2001 3.118038 TCGGAATCCAACCCTAATCCTTG 60.118 47.826 0.00 0.00 0.00 3.61
1581 2002 3.371595 CGGAATCCAACCCTAATCCTTGT 60.372 47.826 0.00 0.00 0.00 3.16
1582 2003 4.610333 GGAATCCAACCCTAATCCTTGTT 58.390 43.478 0.00 0.00 0.00 2.83
1583 2004 5.023452 GGAATCCAACCCTAATCCTTGTTT 58.977 41.667 0.00 0.00 0.00 2.83
1584 2005 5.483937 GGAATCCAACCCTAATCCTTGTTTT 59.516 40.000 0.00 0.00 0.00 2.43
1585 2006 6.666113 GGAATCCAACCCTAATCCTTGTTTTA 59.334 38.462 0.00 0.00 0.00 1.52
1586 2007 7.363530 GGAATCCAACCCTAATCCTTGTTTTAC 60.364 40.741 0.00 0.00 0.00 2.01
1587 2008 5.326900 TCCAACCCTAATCCTTGTTTTACC 58.673 41.667 0.00 0.00 0.00 2.85
1588 2009 5.075344 TCCAACCCTAATCCTTGTTTTACCT 59.925 40.000 0.00 0.00 0.00 3.08
1589 2010 5.778241 CCAACCCTAATCCTTGTTTTACCTT 59.222 40.000 0.00 0.00 0.00 3.50
1590 2011 6.269077 CCAACCCTAATCCTTGTTTTACCTTT 59.731 38.462 0.00 0.00 0.00 3.11
1591 2012 7.452189 CCAACCCTAATCCTTGTTTTACCTTTA 59.548 37.037 0.00 0.00 0.00 1.85
1592 2013 8.520351 CAACCCTAATCCTTGTTTTACCTTTAG 58.480 37.037 0.00 0.00 0.00 1.85
1748 2169 2.697751 CAAGGACGAGGAAGAGGATGAT 59.302 50.000 0.00 0.00 0.00 2.45
1749 2170 2.315176 AGGACGAGGAAGAGGATGATG 58.685 52.381 0.00 0.00 0.00 3.07
1750 2171 1.342819 GGACGAGGAAGAGGATGATGG 59.657 57.143 0.00 0.00 0.00 3.51
1751 2172 1.342819 GACGAGGAAGAGGATGATGGG 59.657 57.143 0.00 0.00 0.00 4.00
1752 2173 0.683973 CGAGGAAGAGGATGATGGGG 59.316 60.000 0.00 0.00 0.00 4.96
1753 2174 1.813102 GAGGAAGAGGATGATGGGGT 58.187 55.000 0.00 0.00 0.00 4.95
1754 2175 1.419387 GAGGAAGAGGATGATGGGGTG 59.581 57.143 0.00 0.00 0.00 4.61
1755 2176 0.475906 GGAAGAGGATGATGGGGTGG 59.524 60.000 0.00 0.00 0.00 4.61
1756 2177 1.511613 GAAGAGGATGATGGGGTGGA 58.488 55.000 0.00 0.00 0.00 4.02
1757 2178 2.061061 GAAGAGGATGATGGGGTGGAT 58.939 52.381 0.00 0.00 0.00 3.41
1758 2179 1.442773 AGAGGATGATGGGGTGGATG 58.557 55.000 0.00 0.00 0.00 3.51
1759 2180 1.061111 AGAGGATGATGGGGTGGATGA 60.061 52.381 0.00 0.00 0.00 2.92
1795 2216 1.419387 GGTGGATGAAGATGAGGAGGG 59.581 57.143 0.00 0.00 0.00 4.30
1814 2235 1.293924 GCGTGGTGGATGAAGATGAG 58.706 55.000 0.00 0.00 0.00 2.90
1817 2238 2.482664 CGTGGTGGATGAAGATGAGGAG 60.483 54.545 0.00 0.00 0.00 3.69
1819 2240 1.419387 GGTGGATGAAGATGAGGAGGG 59.581 57.143 0.00 0.00 0.00 4.30
1822 2243 0.755686 GATGAAGATGAGGAGGGCGT 59.244 55.000 0.00 0.00 0.00 5.68
1845 2266 3.037549 GTGGATGAAGATGAGGAGGACT 58.962 50.000 0.00 0.00 0.00 3.85
1852 2273 2.465813 AGATGAGGAGGACTGTGAAGG 58.534 52.381 0.00 0.00 0.00 3.46
1950 2372 8.518430 TGGCAGAACTTATTAGATTGCATTTA 57.482 30.769 0.00 0.00 31.80 1.40
1959 2381 9.768662 CTTATTAGATTGCATTTAATTTGCCCT 57.231 29.630 8.06 5.94 39.39 5.19
1994 2416 9.442047 ACTTACTTCTTCTGATTAAGTTGATGG 57.558 33.333 9.54 2.07 35.23 3.51
2148 2570 8.746922 ATTTATGTGTAAGCACTTGTTCATTG 57.253 30.769 0.00 0.00 45.44 2.82
2261 2684 9.630098 AAATTGATCTTGCATACAACAGTAAAG 57.370 29.630 0.00 0.00 0.00 1.85
2265 2688 7.331934 TGATCTTGCATACAACAGTAAAGAGTC 59.668 37.037 0.00 0.00 0.00 3.36
2319 2742 7.500227 AGATTCAGTTGAACATTCACTTCTCAA 59.500 33.333 0.00 0.00 36.83 3.02
2499 2923 2.507407 TGGTGATAGTTTTGAGCCCC 57.493 50.000 0.00 0.00 0.00 5.80
2518 2942 2.880890 CCCTACATGTAGCTTTCATGCC 59.119 50.000 24.85 0.00 44.26 4.40
2599 3023 8.325787 TCCAATGTGTAGTATGGTGATAGTTTT 58.674 33.333 0.00 0.00 34.50 2.43
2608 3032 4.235079 TGGTGATAGTTTTGATCCCTGG 57.765 45.455 0.00 0.00 0.00 4.45
2617 3041 3.513909 TTTGATCCCTGGGATGCTATG 57.486 47.619 32.43 0.00 43.27 2.23
2622 3046 0.846015 CCCTGGGATGCTATGTGGAA 59.154 55.000 7.01 0.00 0.00 3.53
2660 3084 1.269257 TGAGCTCACCGATTATGCGAG 60.269 52.381 13.74 0.00 0.00 5.03
2680 3104 6.934083 TGCGAGCCTATTATATTGAATCACAA 59.066 34.615 0.00 0.00 42.95 3.33
2780 3208 5.252969 TGCTTATTCATTGAGCATGGTTC 57.747 39.130 0.00 0.00 41.15 3.62
2783 3211 5.163581 GCTTATTCATTGAGCATGGTTCACT 60.164 40.000 0.00 0.00 36.45 3.41
2834 3262 8.488668 TGTAGAAGGGTTTAGTAAAGAAGTTGT 58.511 33.333 0.00 0.00 0.00 3.32
2998 3426 7.727181 ACTGCAGTAGGAAAACTATATGGTAG 58.273 38.462 20.16 0.00 33.43 3.18
3014 3442 1.743394 GGTAGTGCCATTGTGGTAAGC 59.257 52.381 0.00 0.00 40.46 3.09
3025 3453 4.788925 TTGTGGTAAGCCCTAATGCTAT 57.211 40.909 0.00 0.00 41.80 2.97
3027 3455 5.483685 TGTGGTAAGCCCTAATGCTATAG 57.516 43.478 0.00 0.00 41.80 1.31
3064 3492 9.702253 TTCCAATTGTTATTAGTATTTGGCCTA 57.298 29.630 3.32 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.300681 TGTCATTCCTCAAATTTCATCTAGTTT 57.699 29.630 0.00 0.00 0.00 2.66
23 24 8.868522 TGTCATTCCTCAAATTTCATCTAGTT 57.131 30.769 0.00 0.00 0.00 2.24
24 25 8.324306 TCTGTCATTCCTCAAATTTCATCTAGT 58.676 33.333 0.00 0.00 0.00 2.57
25 26 8.728337 TCTGTCATTCCTCAAATTTCATCTAG 57.272 34.615 0.00 0.00 0.00 2.43
26 27 9.519191 TTTCTGTCATTCCTCAAATTTCATCTA 57.481 29.630 0.00 0.00 0.00 1.98
27 28 8.413309 TTTCTGTCATTCCTCAAATTTCATCT 57.587 30.769 0.00 0.00 0.00 2.90
28 29 9.480053 TTTTTCTGTCATTCCTCAAATTTCATC 57.520 29.630 0.00 0.00 0.00 2.92
29 30 9.264719 GTTTTTCTGTCATTCCTCAAATTTCAT 57.735 29.630 0.00 0.00 0.00 2.57
30 31 8.256605 TGTTTTTCTGTCATTCCTCAAATTTCA 58.743 29.630 0.00 0.00 0.00 2.69
31 32 8.647143 TGTTTTTCTGTCATTCCTCAAATTTC 57.353 30.769 0.00 0.00 0.00 2.17
32 33 9.617523 ATTGTTTTTCTGTCATTCCTCAAATTT 57.382 25.926 0.00 0.00 0.00 1.82
33 34 9.264719 GATTGTTTTTCTGTCATTCCTCAAATT 57.735 29.630 0.00 0.00 0.00 1.82
34 35 8.423349 TGATTGTTTTTCTGTCATTCCTCAAAT 58.577 29.630 0.00 0.00 0.00 2.32
35 36 7.780064 TGATTGTTTTTCTGTCATTCCTCAAA 58.220 30.769 0.00 0.00 0.00 2.69
36 37 7.345422 TGATTGTTTTTCTGTCATTCCTCAA 57.655 32.000 0.00 0.00 0.00 3.02
37 38 6.957920 TGATTGTTTTTCTGTCATTCCTCA 57.042 33.333 0.00 0.00 0.00 3.86
38 39 7.428826 ACTTGATTGTTTTTCTGTCATTCCTC 58.571 34.615 0.00 0.00 0.00 3.71
39 40 7.068593 TGACTTGATTGTTTTTCTGTCATTCCT 59.931 33.333 0.00 0.00 0.00 3.36
40 41 7.202526 TGACTTGATTGTTTTTCTGTCATTCC 58.797 34.615 0.00 0.00 0.00 3.01
41 42 8.807667 ATGACTTGATTGTTTTTCTGTCATTC 57.192 30.769 0.00 0.00 39.81 2.67
43 44 9.037737 CAAATGACTTGATTGTTTTTCTGTCAT 57.962 29.630 0.00 0.00 43.09 3.06
44 45 7.492020 CCAAATGACTTGATTGTTTTTCTGTCA 59.508 33.333 0.00 0.00 37.17 3.58
45 46 7.706179 TCCAAATGACTTGATTGTTTTTCTGTC 59.294 33.333 0.00 0.00 37.17 3.51
46 47 7.555087 TCCAAATGACTTGATTGTTTTTCTGT 58.445 30.769 0.00 0.00 37.17 3.41
47 48 7.707893 ACTCCAAATGACTTGATTGTTTTTCTG 59.292 33.333 0.00 0.00 37.17 3.02
48 49 7.785033 ACTCCAAATGACTTGATTGTTTTTCT 58.215 30.769 0.00 0.00 37.17 2.52
49 50 8.330302 CAACTCCAAATGACTTGATTGTTTTTC 58.670 33.333 0.00 0.00 37.17 2.29
50 51 7.823799 ACAACTCCAAATGACTTGATTGTTTTT 59.176 29.630 0.00 0.00 37.17 1.94
51 52 7.278424 CACAACTCCAAATGACTTGATTGTTTT 59.722 33.333 0.00 0.00 37.17 2.43
52 53 6.757947 CACAACTCCAAATGACTTGATTGTTT 59.242 34.615 0.00 0.00 37.17 2.83
53 54 6.275335 CACAACTCCAAATGACTTGATTGTT 58.725 36.000 0.00 0.00 37.17 2.83
54 55 5.221303 CCACAACTCCAAATGACTTGATTGT 60.221 40.000 0.00 0.00 37.17 2.71
55 56 5.221303 ACCACAACTCCAAATGACTTGATTG 60.221 40.000 0.00 0.00 37.17 2.67
56 57 4.895297 ACCACAACTCCAAATGACTTGATT 59.105 37.500 0.00 0.00 37.17 2.57
57 58 4.473444 ACCACAACTCCAAATGACTTGAT 58.527 39.130 0.00 0.00 37.17 2.57
58 59 3.897239 ACCACAACTCCAAATGACTTGA 58.103 40.909 0.00 0.00 37.17 3.02
59 60 4.654091 AACCACAACTCCAAATGACTTG 57.346 40.909 0.00 0.00 34.52 3.16
60 61 6.783708 TTAAACCACAACTCCAAATGACTT 57.216 33.333 0.00 0.00 0.00 3.01
61 62 6.783708 TTTAAACCACAACTCCAAATGACT 57.216 33.333 0.00 0.00 0.00 3.41
62 63 7.547722 AGTTTTTAAACCACAACTCCAAATGAC 59.452 33.333 1.90 0.00 39.71 3.06
63 64 7.616313 AGTTTTTAAACCACAACTCCAAATGA 58.384 30.769 1.90 0.00 39.71 2.57
64 65 7.841915 AGTTTTTAAACCACAACTCCAAATG 57.158 32.000 1.90 0.00 39.71 2.32
65 66 8.973182 TCTAGTTTTTAAACCACAACTCCAAAT 58.027 29.630 6.33 0.00 39.71 2.32
66 67 8.350852 TCTAGTTTTTAAACCACAACTCCAAA 57.649 30.769 6.33 0.00 39.71 3.28
67 68 7.415877 GCTCTAGTTTTTAAACCACAACTCCAA 60.416 37.037 6.33 0.00 39.71 3.53
68 69 6.038936 GCTCTAGTTTTTAAACCACAACTCCA 59.961 38.462 6.33 0.00 39.71 3.86
69 70 6.436261 GCTCTAGTTTTTAAACCACAACTCC 58.564 40.000 6.33 0.00 39.71 3.85
70 71 6.038936 TGGCTCTAGTTTTTAAACCACAACTC 59.961 38.462 6.33 0.00 39.71 3.01
71 72 5.889289 TGGCTCTAGTTTTTAAACCACAACT 59.111 36.000 7.85 7.85 39.71 3.16
72 73 6.139048 TGGCTCTAGTTTTTAAACCACAAC 57.861 37.500 1.90 0.00 39.71 3.32
73 74 5.889289 ACTGGCTCTAGTTTTTAAACCACAA 59.111 36.000 1.90 0.00 39.71 3.33
74 75 5.442391 ACTGGCTCTAGTTTTTAAACCACA 58.558 37.500 1.90 0.00 39.71 4.17
75 76 5.529800 TGACTGGCTCTAGTTTTTAAACCAC 59.470 40.000 1.90 0.00 39.71 4.16
76 77 5.686753 TGACTGGCTCTAGTTTTTAAACCA 58.313 37.500 1.90 0.00 39.71 3.67
77 78 6.628919 TTGACTGGCTCTAGTTTTTAAACC 57.371 37.500 1.90 0.00 39.71 3.27
78 79 7.704271 ACTTTGACTGGCTCTAGTTTTTAAAC 58.296 34.615 0.00 0.00 39.17 2.01
79 80 7.875327 ACTTTGACTGGCTCTAGTTTTTAAA 57.125 32.000 0.00 0.00 0.00 1.52
80 81 7.875327 AACTTTGACTGGCTCTAGTTTTTAA 57.125 32.000 0.00 0.00 0.00 1.52
81 82 7.660208 CCTAACTTTGACTGGCTCTAGTTTTTA 59.340 37.037 0.00 0.00 31.22 1.52
82 83 6.486993 CCTAACTTTGACTGGCTCTAGTTTTT 59.513 38.462 0.00 0.00 31.22 1.94
83 84 5.998363 CCTAACTTTGACTGGCTCTAGTTTT 59.002 40.000 0.00 0.00 31.22 2.43
84 85 5.513267 CCCTAACTTTGACTGGCTCTAGTTT 60.513 44.000 0.00 0.00 31.22 2.66
85 86 4.020128 CCCTAACTTTGACTGGCTCTAGTT 60.020 45.833 0.00 0.00 32.56 2.24
86 87 3.515901 CCCTAACTTTGACTGGCTCTAGT 59.484 47.826 0.00 0.00 0.00 2.57
87 88 3.515901 ACCCTAACTTTGACTGGCTCTAG 59.484 47.826 0.00 0.00 0.00 2.43
88 89 3.514309 GACCCTAACTTTGACTGGCTCTA 59.486 47.826 0.00 0.00 0.00 2.43
89 90 2.303311 GACCCTAACTTTGACTGGCTCT 59.697 50.000 0.00 0.00 0.00 4.09
90 91 2.038557 TGACCCTAACTTTGACTGGCTC 59.961 50.000 0.00 0.00 0.00 4.70
91 92 2.054799 TGACCCTAACTTTGACTGGCT 58.945 47.619 0.00 0.00 0.00 4.75
92 93 2.561478 TGACCCTAACTTTGACTGGC 57.439 50.000 0.00 0.00 0.00 4.85
93 94 5.182001 CAGATTTGACCCTAACTTTGACTGG 59.818 44.000 0.00 0.00 0.00 4.00
94 95 5.182001 CCAGATTTGACCCTAACTTTGACTG 59.818 44.000 0.00 0.00 0.00 3.51
95 96 5.073144 TCCAGATTTGACCCTAACTTTGACT 59.927 40.000 0.00 0.00 0.00 3.41
96 97 5.313712 TCCAGATTTGACCCTAACTTTGAC 58.686 41.667 0.00 0.00 0.00 3.18
97 98 5.576563 TCCAGATTTGACCCTAACTTTGA 57.423 39.130 0.00 0.00 0.00 2.69
98 99 6.840780 AATCCAGATTTGACCCTAACTTTG 57.159 37.500 0.00 0.00 0.00 2.77
99 100 8.950007 TTAAATCCAGATTTGACCCTAACTTT 57.050 30.769 14.46 0.00 40.83 2.66
100 101 8.950007 TTTAAATCCAGATTTGACCCTAACTT 57.050 30.769 14.46 0.00 40.83 2.66
101 102 9.547279 AATTTAAATCCAGATTTGACCCTAACT 57.453 29.630 14.46 0.00 40.83 2.24
135 136 2.159212 CCCACCGAACCGTTTTCTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
136 137 1.406180 CCCACCGAACCGTTTTCTTTT 59.594 47.619 0.00 0.00 0.00 2.27
137 138 1.026584 CCCACCGAACCGTTTTCTTT 58.973 50.000 0.00 0.00 0.00 2.52
138 139 0.820482 CCCCACCGAACCGTTTTCTT 60.820 55.000 0.00 0.00 0.00 2.52
139 140 1.228033 CCCCACCGAACCGTTTTCT 60.228 57.895 0.00 0.00 0.00 2.52
140 141 0.818852 TTCCCCACCGAACCGTTTTC 60.819 55.000 0.00 0.00 0.00 2.29
141 142 0.178984 ATTCCCCACCGAACCGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
142 143 0.691904 TATTCCCCACCGAACCGTTT 59.308 50.000 0.00 0.00 0.00 3.60
143 144 0.036105 GTATTCCCCACCGAACCGTT 60.036 55.000 0.00 0.00 0.00 4.44
144 145 1.598517 GTATTCCCCACCGAACCGT 59.401 57.895 0.00 0.00 0.00 4.83
145 146 1.519898 CGTATTCCCCACCGAACCG 60.520 63.158 0.00 0.00 0.00 4.44
146 147 1.816679 GCGTATTCCCCACCGAACC 60.817 63.158 0.00 0.00 0.00 3.62
147 148 0.392060 AAGCGTATTCCCCACCGAAC 60.392 55.000 0.00 0.00 0.00 3.95
148 149 0.325602 AAAGCGTATTCCCCACCGAA 59.674 50.000 0.00 0.00 0.00 4.30
149 150 0.108041 GAAAGCGTATTCCCCACCGA 60.108 55.000 0.00 0.00 0.00 4.69
150 151 0.391927 TGAAAGCGTATTCCCCACCG 60.392 55.000 0.84 0.00 0.00 4.94
151 152 1.065709 TCTGAAAGCGTATTCCCCACC 60.066 52.381 0.84 0.00 0.00 4.61
152 153 2.396590 TCTGAAAGCGTATTCCCCAC 57.603 50.000 0.84 0.00 0.00 4.61
153 154 3.644966 ATTCTGAAAGCGTATTCCCCA 57.355 42.857 0.00 0.00 0.00 4.96
154 155 4.065789 CCTATTCTGAAAGCGTATTCCCC 58.934 47.826 0.00 0.00 0.00 4.81
155 156 4.957296 TCCTATTCTGAAAGCGTATTCCC 58.043 43.478 0.00 0.00 0.00 3.97
156 157 6.201234 GTCTTCCTATTCTGAAAGCGTATTCC 59.799 42.308 0.00 0.00 0.00 3.01
157 158 6.074782 CGTCTTCCTATTCTGAAAGCGTATTC 60.075 42.308 0.00 0.00 0.00 1.75
158 159 5.749109 CGTCTTCCTATTCTGAAAGCGTATT 59.251 40.000 0.00 0.00 0.00 1.89
159 160 5.163540 ACGTCTTCCTATTCTGAAAGCGTAT 60.164 40.000 0.00 0.00 33.49 3.06
160 161 4.157289 ACGTCTTCCTATTCTGAAAGCGTA 59.843 41.667 0.00 0.00 33.49 4.42
161 162 3.056749 ACGTCTTCCTATTCTGAAAGCGT 60.057 43.478 0.00 0.00 31.74 5.07
162 163 3.512680 ACGTCTTCCTATTCTGAAAGCG 58.487 45.455 0.00 0.00 0.00 4.68
163 164 5.652518 AGTACGTCTTCCTATTCTGAAAGC 58.347 41.667 0.00 0.00 0.00 3.51
164 165 6.267070 GGAGTACGTCTTCCTATTCTGAAAG 58.733 44.000 10.22 0.00 0.00 2.62
165 166 5.126707 GGGAGTACGTCTTCCTATTCTGAAA 59.873 44.000 15.47 0.00 38.77 2.69
166 167 4.643784 GGGAGTACGTCTTCCTATTCTGAA 59.356 45.833 15.47 0.00 38.77 3.02
167 168 4.205587 GGGAGTACGTCTTCCTATTCTGA 58.794 47.826 15.47 0.00 38.77 3.27
168 169 3.003482 CGGGAGTACGTCTTCCTATTCTG 59.997 52.174 15.47 0.00 39.67 3.02
169 170 3.212685 CGGGAGTACGTCTTCCTATTCT 58.787 50.000 15.47 0.00 39.67 2.40
170 171 2.948315 ACGGGAGTACGTCTTCCTATTC 59.052 50.000 15.47 1.66 45.08 1.75
171 172 2.686915 CACGGGAGTACGTCTTCCTATT 59.313 50.000 15.47 1.29 46.75 1.73
172 173 2.295885 CACGGGAGTACGTCTTCCTAT 58.704 52.381 15.47 4.33 46.75 2.57
173 174 1.003580 ACACGGGAGTACGTCTTCCTA 59.996 52.381 15.47 0.00 46.75 2.94
174 175 0.251077 ACACGGGAGTACGTCTTCCT 60.251 55.000 15.47 0.00 46.75 3.36
175 176 0.600057 AACACGGGAGTACGTCTTCC 59.400 55.000 9.23 9.23 46.75 3.46
176 177 2.428888 AAACACGGGAGTACGTCTTC 57.571 50.000 0.00 0.00 46.75 2.87
177 178 2.350772 CGTAAACACGGGAGTACGTCTT 60.351 50.000 14.10 0.00 46.75 3.01
178 179 1.197721 CGTAAACACGGGAGTACGTCT 59.802 52.381 14.10 0.00 46.75 4.18
179 180 1.606606 CGTAAACACGGGAGTACGTC 58.393 55.000 14.10 0.00 46.75 4.34
181 182 0.109597 AGCGTAAACACGGGAGTACG 60.110 55.000 16.85 16.85 44.67 3.67
182 183 1.988467 GAAGCGTAAACACGGGAGTAC 59.012 52.381 0.00 0.00 44.67 2.73
183 184 1.067635 GGAAGCGTAAACACGGGAGTA 60.068 52.381 0.00 0.00 44.67 2.59
185 186 0.320073 TGGAAGCGTAAACACGGGAG 60.320 55.000 0.00 0.00 0.00 4.30
186 187 0.322322 ATGGAAGCGTAAACACGGGA 59.678 50.000 0.00 0.00 0.00 5.14
187 188 0.725117 GATGGAAGCGTAAACACGGG 59.275 55.000 0.00 0.00 0.00 5.28
188 189 0.368907 CGATGGAAGCGTAAACACGG 59.631 55.000 0.00 0.00 43.21 4.94
189 190 3.850207 CGATGGAAGCGTAAACACG 57.150 52.632 0.00 0.00 43.21 4.49
198 199 0.928229 AACGCGTAATCGATGGAAGC 59.072 50.000 14.46 3.50 39.71 3.86
199 200 2.190161 TGAACGCGTAATCGATGGAAG 58.810 47.619 14.46 0.00 39.71 3.46
200 201 2.159352 TCTGAACGCGTAATCGATGGAA 60.159 45.455 14.46 0.00 39.71 3.53
201 202 1.402613 TCTGAACGCGTAATCGATGGA 59.597 47.619 14.46 2.12 39.71 3.41
202 203 1.835121 TCTGAACGCGTAATCGATGG 58.165 50.000 14.46 0.00 39.71 3.51
203 204 2.596862 TGTTCTGAACGCGTAATCGATG 59.403 45.455 14.46 2.17 39.71 3.84
204 205 2.852413 CTGTTCTGAACGCGTAATCGAT 59.148 45.455 14.46 0.00 39.71 3.59
205 206 2.247637 CTGTTCTGAACGCGTAATCGA 58.752 47.619 14.46 6.78 39.71 3.59
206 207 1.320555 CCTGTTCTGAACGCGTAATCG 59.679 52.381 14.46 4.34 40.37 3.34
207 208 1.659098 CCCTGTTCTGAACGCGTAATC 59.341 52.381 14.46 8.34 0.00 1.75
208 209 1.274167 TCCCTGTTCTGAACGCGTAAT 59.726 47.619 14.46 0.00 0.00 1.89
209 210 0.675083 TCCCTGTTCTGAACGCGTAA 59.325 50.000 14.46 2.65 0.00 3.18
210 211 0.675083 TTCCCTGTTCTGAACGCGTA 59.325 50.000 14.46 0.00 0.00 4.42
211 212 0.600255 CTTCCCTGTTCTGAACGCGT 60.600 55.000 5.58 5.58 0.00 6.01
212 213 0.319555 TCTTCCCTGTTCTGAACGCG 60.320 55.000 15.18 3.53 0.00 6.01
213 214 1.149148 GTCTTCCCTGTTCTGAACGC 58.851 55.000 15.18 0.00 0.00 4.84
214 215 2.526304 TGTCTTCCCTGTTCTGAACG 57.474 50.000 15.18 9.97 0.00 3.95
215 216 5.940470 ACAATATGTCTTCCCTGTTCTGAAC 59.060 40.000 13.49 13.49 0.00 3.18
216 217 6.126863 ACAATATGTCTTCCCTGTTCTGAA 57.873 37.500 0.00 0.00 0.00 3.02
217 218 5.338381 GGACAATATGTCTTCCCTGTTCTGA 60.338 44.000 10.06 0.00 46.19 3.27
218 219 4.878397 GGACAATATGTCTTCCCTGTTCTG 59.122 45.833 10.06 0.00 46.19 3.02
219 220 4.536090 TGGACAATATGTCTTCCCTGTTCT 59.464 41.667 10.06 0.00 46.19 3.01
220 221 4.843728 TGGACAATATGTCTTCCCTGTTC 58.156 43.478 10.06 0.00 46.19 3.18
221 222 4.536090 TCTGGACAATATGTCTTCCCTGTT 59.464 41.667 10.06 0.00 46.19 3.16
222 223 4.104086 TCTGGACAATATGTCTTCCCTGT 58.896 43.478 10.06 0.00 46.19 4.00
223 224 4.163078 ACTCTGGACAATATGTCTTCCCTG 59.837 45.833 10.06 0.00 46.19 4.45
224 225 4.366267 ACTCTGGACAATATGTCTTCCCT 58.634 43.478 10.06 0.00 46.19 4.20
225 226 4.762289 ACTCTGGACAATATGTCTTCCC 57.238 45.455 10.06 0.00 46.19 3.97
226 227 5.282510 CGTACTCTGGACAATATGTCTTCC 58.717 45.833 10.06 0.00 46.19 3.46
227 228 4.740695 GCGTACTCTGGACAATATGTCTTC 59.259 45.833 10.06 0.00 46.19 2.87
228 229 4.402793 AGCGTACTCTGGACAATATGTCTT 59.597 41.667 10.06 0.00 46.19 3.01
229 230 3.954904 AGCGTACTCTGGACAATATGTCT 59.045 43.478 10.06 0.00 46.19 3.41
230 231 4.308899 AGCGTACTCTGGACAATATGTC 57.691 45.455 1.88 1.88 46.23 3.06
231 232 4.441634 GGAAGCGTACTCTGGACAATATGT 60.442 45.833 0.00 0.00 0.00 2.29
232 233 4.051922 GGAAGCGTACTCTGGACAATATG 58.948 47.826 0.00 0.00 0.00 1.78
233 234 3.704566 TGGAAGCGTACTCTGGACAATAT 59.295 43.478 0.00 0.00 0.00 1.28
234 235 3.093814 TGGAAGCGTACTCTGGACAATA 58.906 45.455 0.00 0.00 0.00 1.90
235 236 1.899814 TGGAAGCGTACTCTGGACAAT 59.100 47.619 0.00 0.00 0.00 2.71
236 237 1.000506 GTGGAAGCGTACTCTGGACAA 59.999 52.381 0.00 0.00 0.00 3.18
237 238 0.601558 GTGGAAGCGTACTCTGGACA 59.398 55.000 0.00 0.00 0.00 4.02
238 239 0.889306 AGTGGAAGCGTACTCTGGAC 59.111 55.000 0.00 0.00 0.00 4.02
239 240 1.629043 AAGTGGAAGCGTACTCTGGA 58.371 50.000 0.00 0.00 0.00 3.86
240 241 2.159226 CCTAAGTGGAAGCGTACTCTGG 60.159 54.545 0.00 0.00 38.35 3.86
241 242 2.753452 TCCTAAGTGGAAGCGTACTCTG 59.247 50.000 0.00 0.00 42.94 3.35
242 243 3.083122 TCCTAAGTGGAAGCGTACTCT 57.917 47.619 0.00 0.00 42.94 3.24
252 253 2.050350 CCGGCTCGTCCTAAGTGGA 61.050 63.158 0.00 0.00 43.86 4.02
253 254 2.494918 CCGGCTCGTCCTAAGTGG 59.505 66.667 0.00 0.00 37.10 4.00
254 255 2.202756 GCCGGCTCGTCCTAAGTG 60.203 66.667 22.15 0.00 0.00 3.16
255 256 3.823330 CGCCGGCTCGTCCTAAGT 61.823 66.667 26.68 0.00 0.00 2.24
256 257 3.823330 ACGCCGGCTCGTCCTAAG 61.823 66.667 26.68 7.84 38.44 2.18
257 258 4.124351 CACGCCGGCTCGTCCTAA 62.124 66.667 26.68 0.00 41.21 2.69
270 271 4.626081 AGTGACCCAGCACCACGC 62.626 66.667 0.00 0.00 39.59 5.34
271 272 2.454832 ATCAGTGACCCAGCACCACG 62.455 60.000 0.00 0.00 39.59 4.94
272 273 0.613260 TATCAGTGACCCAGCACCAC 59.387 55.000 0.00 0.00 39.59 4.16
273 274 0.904649 CTATCAGTGACCCAGCACCA 59.095 55.000 0.00 0.00 39.59 4.17
274 275 0.905357 ACTATCAGTGACCCAGCACC 59.095 55.000 0.00 0.00 39.59 5.01
284 285 1.224592 GGTGGGCCCACTATCAGTG 59.775 63.158 45.38 0.00 45.53 3.66
285 286 1.082954 AGGTGGGCCCACTATCAGT 59.917 57.895 45.38 24.68 45.52 3.41
286 287 0.982852 TCAGGTGGGCCCACTATCAG 60.983 60.000 45.38 31.15 45.52 2.90
287 288 1.082019 TCAGGTGGGCCCACTATCA 59.918 57.895 45.38 28.01 45.52 2.15
288 289 1.527370 GTCAGGTGGGCCCACTATC 59.473 63.158 45.38 32.45 45.52 2.08
289 290 2.001269 GGTCAGGTGGGCCCACTAT 61.001 63.158 45.38 33.98 45.52 2.12
290 291 2.609610 GGTCAGGTGGGCCCACTA 60.610 66.667 45.38 31.26 45.52 2.74
312 313 2.045926 ATGAGGCGTGGCTTGACC 60.046 61.111 0.00 0.00 39.84 4.02
313 314 2.109126 GGATGAGGCGTGGCTTGAC 61.109 63.158 0.00 0.00 0.00 3.18
314 315 2.268920 GGATGAGGCGTGGCTTGA 59.731 61.111 0.00 0.00 0.00 3.02
315 316 3.197790 CGGATGAGGCGTGGCTTG 61.198 66.667 0.00 0.00 0.00 4.01
316 317 4.473520 CCGGATGAGGCGTGGCTT 62.474 66.667 0.00 0.00 0.00 4.35
318 319 4.467084 TTCCGGATGAGGCGTGGC 62.467 66.667 4.15 0.00 0.00 5.01
319 320 2.511600 GTTCCGGATGAGGCGTGG 60.512 66.667 4.15 0.00 0.00 4.94
320 321 2.511600 GGTTCCGGATGAGGCGTG 60.512 66.667 4.15 0.00 0.00 5.34
321 322 2.683933 AGGTTCCGGATGAGGCGT 60.684 61.111 4.15 0.00 0.00 5.68
322 323 2.202932 CAGGTTCCGGATGAGGCG 60.203 66.667 4.15 0.00 0.00 5.52
323 324 2.514824 GCAGGTTCCGGATGAGGC 60.515 66.667 4.15 3.68 0.00 4.70
324 325 1.144936 GAGCAGGTTCCGGATGAGG 59.855 63.158 4.15 0.00 0.00 3.86
325 326 1.144936 GGAGCAGGTTCCGGATGAG 59.855 63.158 4.15 0.00 0.00 2.90
326 327 1.306141 AGGAGCAGGTTCCGGATGA 60.306 57.895 4.15 0.00 42.29 2.92
327 328 1.144936 GAGGAGCAGGTTCCGGATG 59.855 63.158 4.15 0.99 42.29 3.51
328 329 0.261991 TAGAGGAGCAGGTTCCGGAT 59.738 55.000 4.15 0.00 42.29 4.18
329 330 0.683504 GTAGAGGAGCAGGTTCCGGA 60.684 60.000 0.00 0.00 42.29 5.14
330 331 1.677637 GGTAGAGGAGCAGGTTCCGG 61.678 65.000 0.00 0.00 42.29 5.14
479 495 0.888285 TGCAACCGTGTGATGCATCA 60.888 50.000 25.42 25.42 44.52 3.07
490 506 2.319136 TAGTTGACTTGTGCAACCGT 57.681 45.000 0.00 0.00 45.05 4.83
491 507 3.896648 ATTAGTTGACTTGTGCAACCG 57.103 42.857 0.00 0.00 45.05 4.44
500 516 9.143155 ACAAGGAAACCATTAATTAGTTGACTT 57.857 29.630 2.21 6.58 0.00 3.01
715 1132 7.488889 ACCCCTCAATAAAATATTTCCCCTA 57.511 36.000 0.10 0.00 0.00 3.53
726 1143 5.961421 CCTATTTCCCAACCCCTCAATAAAA 59.039 40.000 0.00 0.00 0.00 1.52
827 1244 5.450274 GCTTACCTCCTAACCGAAAGTCTAG 60.450 48.000 0.00 0.00 0.00 2.43
1080 1497 1.282930 GGCTAATAGCGTACGCAGGC 61.283 60.000 38.58 32.52 43.62 4.85
1144 1561 6.364435 ACCTCGTACGAGAAATTTACAACTTC 59.636 38.462 39.62 0.00 44.53 3.01
1152 1569 5.633830 TCTGTACCTCGTACGAGAAATTT 57.366 39.130 39.62 22.23 44.53 1.82
1157 1574 2.169144 TCCATCTGTACCTCGTACGAGA 59.831 50.000 39.62 22.59 44.53 4.04
1191 1608 4.579869 ACAGGATAGAAATTGAACGCACT 58.420 39.130 0.00 0.00 0.00 4.40
1198 1615 5.269554 ACCCCAAACAGGATAGAAATTGA 57.730 39.130 0.00 0.00 41.22 2.57
1207 1624 4.202781 ACCAAATCTTACCCCAAACAGGAT 60.203 41.667 0.00 0.00 41.22 3.24
1250 1671 0.314302 CCCAAACAGACTCGTCGACT 59.686 55.000 14.70 0.00 34.09 4.18
1298 1719 5.878669 GGTTAACCCCTAACACTAATCACTG 59.121 44.000 14.16 0.00 41.60 3.66
1353 1774 1.258445 CGGCCCACTACCTCAGTCTT 61.258 60.000 0.00 0.00 34.26 3.01
1413 1834 1.137872 ACAGCCGAGATCACCATCTTC 59.862 52.381 0.00 0.00 39.71 2.87
1483 1904 2.775911 TGATTGCCTTCTGTCCTCAG 57.224 50.000 0.00 0.00 42.54 3.35
1527 1948 7.498900 AGTTCAAATGACTGATAACAACAGACA 59.501 33.333 0.00 0.00 41.91 3.41
1528 1949 7.800380 CAGTTCAAATGACTGATAACAACAGAC 59.200 37.037 0.00 0.00 38.55 3.51
1529 1950 7.520453 GCAGTTCAAATGACTGATAACAACAGA 60.520 37.037 8.33 0.00 38.55 3.41
1530 1951 6.580041 GCAGTTCAAATGACTGATAACAACAG 59.420 38.462 8.33 0.00 40.68 3.16
1531 1952 6.039159 TGCAGTTCAAATGACTGATAACAACA 59.961 34.615 8.33 0.00 33.65 3.33
1532 1953 6.437928 TGCAGTTCAAATGACTGATAACAAC 58.562 36.000 8.33 0.00 33.65 3.32
1533 1954 6.631971 TGCAGTTCAAATGACTGATAACAA 57.368 33.333 8.33 0.00 33.65 2.83
1534 1955 6.822667 ATGCAGTTCAAATGACTGATAACA 57.177 33.333 8.33 0.00 33.65 2.41
1535 1956 6.467047 CGAATGCAGTTCAAATGACTGATAAC 59.533 38.462 8.33 0.00 36.60 1.89
1536 1957 6.403527 CCGAATGCAGTTCAAATGACTGATAA 60.404 38.462 8.33 0.00 36.60 1.75
1537 1958 5.065090 CCGAATGCAGTTCAAATGACTGATA 59.935 40.000 8.33 0.00 36.60 2.15
1538 1959 4.142534 CCGAATGCAGTTCAAATGACTGAT 60.143 41.667 8.33 0.00 36.60 2.90
1539 1960 3.189080 CCGAATGCAGTTCAAATGACTGA 59.811 43.478 8.33 0.00 36.60 3.41
1540 1961 3.189080 TCCGAATGCAGTTCAAATGACTG 59.811 43.478 0.00 0.10 36.60 3.51
1541 1962 3.411446 TCCGAATGCAGTTCAAATGACT 58.589 40.909 0.00 0.00 36.60 3.41
1542 1963 3.829886 TCCGAATGCAGTTCAAATGAC 57.170 42.857 0.00 0.00 36.60 3.06
1543 1964 4.142403 GGATTCCGAATGCAGTTCAAATGA 60.142 41.667 7.69 0.00 36.60 2.57
1544 1965 4.107622 GGATTCCGAATGCAGTTCAAATG 58.892 43.478 7.69 0.00 36.60 2.32
1545 1966 3.763360 TGGATTCCGAATGCAGTTCAAAT 59.237 39.130 10.98 0.30 34.08 2.32
1546 1967 3.153130 TGGATTCCGAATGCAGTTCAAA 58.847 40.909 10.98 0.00 34.08 2.69
1547 1968 2.789213 TGGATTCCGAATGCAGTTCAA 58.211 42.857 10.98 0.00 34.08 2.69
1548 1969 2.487762 GTTGGATTCCGAATGCAGTTCA 59.512 45.455 14.13 0.00 40.41 3.18
1549 1970 2.159379 GGTTGGATTCCGAATGCAGTTC 60.159 50.000 14.13 9.59 40.41 3.01
1550 1971 1.818674 GGTTGGATTCCGAATGCAGTT 59.181 47.619 14.13 0.00 40.41 3.16
1551 1972 1.463674 GGTTGGATTCCGAATGCAGT 58.536 50.000 14.13 0.00 40.41 4.40
1552 1973 0.740737 GGGTTGGATTCCGAATGCAG 59.259 55.000 14.13 0.00 40.41 4.41
1553 1974 0.331278 AGGGTTGGATTCCGAATGCA 59.669 50.000 10.98 10.98 37.45 3.96
1554 1975 2.341846 TAGGGTTGGATTCCGAATGC 57.658 50.000 5.71 5.71 0.00 3.56
1555 1976 3.821033 GGATTAGGGTTGGATTCCGAATG 59.179 47.826 0.00 0.00 30.41 2.67
1556 1977 3.722101 AGGATTAGGGTTGGATTCCGAAT 59.278 43.478 0.00 0.00 32.40 3.34
1557 1978 3.120108 AGGATTAGGGTTGGATTCCGAA 58.880 45.455 0.00 0.00 0.00 4.30
1558 1979 2.771688 AGGATTAGGGTTGGATTCCGA 58.228 47.619 0.00 0.00 0.00 4.55
1559 1980 3.214328 CAAGGATTAGGGTTGGATTCCG 58.786 50.000 0.00 0.00 0.00 4.30
1560 1981 4.251103 ACAAGGATTAGGGTTGGATTCC 57.749 45.455 0.00 0.00 0.00 3.01
1561 1982 6.605471 AAAACAAGGATTAGGGTTGGATTC 57.395 37.500 0.00 0.00 0.00 2.52
1562 1983 6.439375 GGTAAAACAAGGATTAGGGTTGGATT 59.561 38.462 0.00 0.00 0.00 3.01
1563 1984 5.955959 GGTAAAACAAGGATTAGGGTTGGAT 59.044 40.000 0.00 0.00 0.00 3.41
1564 1985 5.075344 AGGTAAAACAAGGATTAGGGTTGGA 59.925 40.000 0.00 0.00 0.00 3.53
1565 1986 5.330233 AGGTAAAACAAGGATTAGGGTTGG 58.670 41.667 0.00 0.00 0.00 3.77
1566 1987 6.911250 AAGGTAAAACAAGGATTAGGGTTG 57.089 37.500 0.00 0.00 0.00 3.77
1567 1988 8.229605 ACTAAAGGTAAAACAAGGATTAGGGTT 58.770 33.333 0.00 0.00 0.00 4.11
1568 1989 7.762610 ACTAAAGGTAAAACAAGGATTAGGGT 58.237 34.615 0.00 0.00 0.00 4.34
1569 1990 8.520351 CAACTAAAGGTAAAACAAGGATTAGGG 58.480 37.037 0.00 0.00 0.00 3.53
1570 1991 8.520351 CCAACTAAAGGTAAAACAAGGATTAGG 58.480 37.037 0.00 0.00 0.00 2.69
1571 1992 9.074576 ACCAACTAAAGGTAAAACAAGGATTAG 57.925 33.333 0.00 0.00 37.67 1.73
1572 1993 8.999905 ACCAACTAAAGGTAAAACAAGGATTA 57.000 30.769 0.00 0.00 37.67 1.75
1573 1994 7.562088 TGACCAACTAAAGGTAAAACAAGGATT 59.438 33.333 0.00 0.00 40.09 3.01
1574 1995 7.013942 GTGACCAACTAAAGGTAAAACAAGGAT 59.986 37.037 0.00 0.00 40.09 3.24
1575 1996 6.319405 GTGACCAACTAAAGGTAAAACAAGGA 59.681 38.462 0.00 0.00 40.09 3.36
1576 1997 6.320418 AGTGACCAACTAAAGGTAAAACAAGG 59.680 38.462 0.00 0.00 40.09 3.61
1577 1998 7.329588 AGTGACCAACTAAAGGTAAAACAAG 57.670 36.000 0.00 0.00 40.09 3.16
1578 1999 6.037391 CGAGTGACCAACTAAAGGTAAAACAA 59.963 38.462 0.00 0.00 40.07 2.83
1579 2000 5.524646 CGAGTGACCAACTAAAGGTAAAACA 59.475 40.000 0.00 0.00 40.07 2.83
1580 2001 5.525012 ACGAGTGACCAACTAAAGGTAAAAC 59.475 40.000 0.00 0.00 40.07 2.43
1581 2002 5.673514 ACGAGTGACCAACTAAAGGTAAAA 58.326 37.500 0.00 0.00 40.07 1.52
1582 2003 5.280654 ACGAGTGACCAACTAAAGGTAAA 57.719 39.130 0.00 0.00 40.07 2.01
1583 2004 4.942761 ACGAGTGACCAACTAAAGGTAA 57.057 40.909 0.00 0.00 40.07 2.85
1584 2005 4.942761 AACGAGTGACCAACTAAAGGTA 57.057 40.909 0.00 0.00 40.07 3.08
1585 2006 3.832615 AACGAGTGACCAACTAAAGGT 57.167 42.857 0.00 0.00 40.07 3.50
1586 2007 6.425721 TGAATAAACGAGTGACCAACTAAAGG 59.574 38.462 0.00 0.00 40.07 3.11
1587 2008 7.384115 TCTGAATAAACGAGTGACCAACTAAAG 59.616 37.037 0.00 0.00 40.07 1.85
1588 2009 7.211573 TCTGAATAAACGAGTGACCAACTAAA 58.788 34.615 0.00 0.00 40.07 1.85
1589 2010 6.751157 TCTGAATAAACGAGTGACCAACTAA 58.249 36.000 0.00 0.00 40.07 2.24
1590 2011 6.015688 ACTCTGAATAAACGAGTGACCAACTA 60.016 38.462 0.00 0.00 40.07 2.24
1591 2012 5.209818 TCTGAATAAACGAGTGACCAACT 57.790 39.130 0.00 0.00 43.85 3.16
1592 2013 4.989168 ACTCTGAATAAACGAGTGACCAAC 59.011 41.667 0.00 0.00 36.70 3.77
1748 2169 1.216064 CCTCATCTTCATCCACCCCA 58.784 55.000 0.00 0.00 0.00 4.96
1749 2170 1.419387 CTCCTCATCTTCATCCACCCC 59.581 57.143 0.00 0.00 0.00 4.95
1750 2171 1.419387 CCTCCTCATCTTCATCCACCC 59.581 57.143 0.00 0.00 0.00 4.61
1751 2172 1.419387 CCCTCCTCATCTTCATCCACC 59.581 57.143 0.00 0.00 0.00 4.61
1752 2173 1.202746 GCCCTCCTCATCTTCATCCAC 60.203 57.143 0.00 0.00 0.00 4.02
1753 2174 1.135094 GCCCTCCTCATCTTCATCCA 58.865 55.000 0.00 0.00 0.00 3.41
1754 2175 0.034616 CGCCCTCCTCATCTTCATCC 59.965 60.000 0.00 0.00 0.00 3.51
1755 2176 0.755686 ACGCCCTCCTCATCTTCATC 59.244 55.000 0.00 0.00 0.00 2.92
1756 2177 0.467384 CACGCCCTCCTCATCTTCAT 59.533 55.000 0.00 0.00 0.00 2.57
1757 2178 1.617018 CCACGCCCTCCTCATCTTCA 61.617 60.000 0.00 0.00 0.00 3.02
1758 2179 1.144936 CCACGCCCTCCTCATCTTC 59.855 63.158 0.00 0.00 0.00 2.87
1759 2180 1.613630 ACCACGCCCTCCTCATCTT 60.614 57.895 0.00 0.00 0.00 2.40
1795 2216 1.293924 CTCATCTTCATCCACCACGC 58.706 55.000 0.00 0.00 0.00 5.34
1814 2235 2.876368 CTTCATCCACCACGCCCTCC 62.876 65.000 0.00 0.00 0.00 4.30
1817 2238 1.097547 CATCTTCATCCACCACGCCC 61.098 60.000 0.00 0.00 0.00 6.13
1819 2240 1.293924 CTCATCTTCATCCACCACGC 58.706 55.000 0.00 0.00 0.00 5.34
1822 2243 2.121948 CCTCCTCATCTTCATCCACCA 58.878 52.381 0.00 0.00 0.00 4.17
1845 2266 5.688814 ATCTCATCATCTTCACCTTCACA 57.311 39.130 0.00 0.00 0.00 3.58
1852 2273 5.218885 CCGTCAGTATCTCATCATCTTCAC 58.781 45.833 0.00 0.00 0.00 3.18
1920 2342 6.352516 CAATCTAATAAGTTCTGCCAGGACT 58.647 40.000 0.00 0.00 0.00 3.85
1950 2372 8.417273 AAGTAAGTATAACAACAGGGCAAATT 57.583 30.769 0.00 0.00 0.00 1.82
1957 2379 9.877178 ATCAGAAGAAGTAAGTATAACAACAGG 57.123 33.333 0.00 0.00 0.00 4.00
1994 2416 4.878397 AGTAGCAGGCTTATTGTGATCAAC 59.122 41.667 0.00 0.00 36.33 3.18
2148 2570 4.399934 TGGAAGAAACAAGGTTACCACAAC 59.600 41.667 3.51 0.00 0.00 3.32
2237 2659 8.565896 TCTTTACTGTTGTATGCAAGATCAAT 57.434 30.769 0.00 0.00 34.94 2.57
2252 2675 7.633193 AGTGAGATATCGACTCTTTACTGTT 57.367 36.000 12.74 0.00 35.66 3.16
2319 2742 2.164017 TGATGTGCAGCATTAACGCAAT 59.836 40.909 0.00 0.00 38.06 3.56
2499 2923 4.445453 TCTGGCATGAAAGCTACATGTAG 58.555 43.478 25.68 25.68 44.52 2.74
2518 2942 6.872920 ACTAGAGAACCAGATTAAGCTTCTG 58.127 40.000 0.00 4.31 40.25 3.02
2599 3023 1.701292 CACATAGCATCCCAGGGATCA 59.299 52.381 19.44 7.21 40.98 2.92
2608 3032 6.058183 ACAGAGTTATTTCCACATAGCATCC 58.942 40.000 0.00 0.00 0.00 3.51
2617 3041 4.935808 ACAATCGGACAGAGTTATTTCCAC 59.064 41.667 0.00 0.00 0.00 4.02
2622 3046 4.081420 AGCTCACAATCGGACAGAGTTATT 60.081 41.667 0.00 0.00 0.00 1.40
2694 3118 9.511272 AATTATGGTACGAAGTTAACTCCTTTT 57.489 29.630 8.95 0.00 37.78 2.27
2808 3236 8.488668 ACAACTTCTTTACTAAACCCTTCTACA 58.511 33.333 0.00 0.00 0.00 2.74
2834 3262 3.300388 AGATTCTGGACCTCGCATTCTA 58.700 45.455 0.00 0.00 0.00 2.10
2949 3377 5.412526 TGGCAAGACAAAGTAACTAAACG 57.587 39.130 0.00 0.00 0.00 3.60
2953 3381 5.220970 GCAGTTTGGCAAGACAAAGTAACTA 60.221 40.000 8.32 0.00 40.89 2.24
2961 3389 1.473258 ACTGCAGTTTGGCAAGACAA 58.527 45.000 15.25 0.00 44.40 3.18
2998 3426 0.611896 AGGGCTTACCACAATGGCAC 60.612 55.000 0.00 0.00 42.67 5.01
3014 3442 7.251321 AGATCCAAACTCTATAGCATTAGGG 57.749 40.000 0.00 0.00 0.00 3.53
3064 3492 7.959658 TCATGTTCCACAAATTTCCTGATAT 57.040 32.000 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.