Multiple sequence alignment - TraesCS7B01G089100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G089100 chr7B 100.000 2848 0 0 1 2848 103982143 103979296 0.000000e+00 5260
1 TraesCS7B01G089100 chr7B 96.947 131 4 0 1987 2117 440630891 440630761 1.330000e-53 220
2 TraesCS7B01G089100 chr7B 85.165 182 24 3 2228 2407 527982937 527983117 1.740000e-42 183
3 TraesCS7B01G089100 chr7D 94.571 1234 38 10 733 1937 138499996 138498763 0.000000e+00 1881
4 TraesCS7B01G089100 chr7D 89.617 732 42 11 5 730 138501311 138500608 0.000000e+00 900
5 TraesCS7B01G089100 chr7D 87.943 564 40 10 2142 2682 138498652 138498094 8.600000e-180 640
6 TraesCS7B01G089100 chr7D 96.241 133 5 0 1985 2117 32642318 32642186 4.780000e-53 219
7 TraesCS7B01G089100 chr7A 92.888 1153 66 10 26 1169 138538403 138537258 0.000000e+00 1661
8 TraesCS7B01G089100 chr7A 93.671 474 19 5 1104 1573 138537251 138536785 0.000000e+00 699
9 TraesCS7B01G089100 chr7A 90.027 371 25 5 1571 1931 138536626 138536258 1.190000e-128 470
10 TraesCS7B01G089100 chr7A 83.112 527 54 19 2166 2680 138536167 138535664 5.600000e-122 448
11 TraesCS7B01G089100 chr7A 86.750 400 43 7 1189 1579 138670504 138670106 1.210000e-118 436
12 TraesCS7B01G089100 chr7A 83.500 400 43 21 2136 2530 138669090 138668709 4.510000e-93 351
13 TraesCS7B01G089100 chr7A 92.893 197 13 1 887 1083 138670687 138670492 4.640000e-73 285
14 TraesCS7B01G089100 chr7A 87.654 243 30 0 1599 1841 138670117 138669875 1.670000e-72 283
15 TraesCS7B01G089100 chr7A 94.444 144 7 1 1977 2120 501074814 501074672 1.330000e-53 220
16 TraesCS7B01G089100 chr7A 95.620 137 6 0 1984 2120 701163395 701163531 1.330000e-53 220
17 TraesCS7B01G089100 chr7A 88.125 160 16 3 316 474 138679262 138679105 1.350000e-43 187
18 TraesCS7B01G089100 chr7A 89.655 145 12 3 751 894 138678974 138678832 6.270000e-42 182
19 TraesCS7B01G089100 chr3A 99.213 127 1 0 1991 2117 38275538 38275664 2.210000e-56 230
20 TraesCS7B01G089100 chr3A 96.269 134 4 1 1991 2124 38671375 38671243 4.780000e-53 219
21 TraesCS7B01G089100 chr6A 88.889 180 18 2 2247 2424 495246336 495246515 1.330000e-53 220
22 TraesCS7B01G089100 chr6A 87.135 171 20 2 2247 2415 495108312 495108482 2.900000e-45 193
23 TraesCS7B01G089100 chr5A 95.620 137 6 0 1982 2118 145678332 145678468 1.330000e-53 220
24 TraesCS7B01G089100 chr4A 94.444 144 7 1 1984 2127 513376015 513375873 1.330000e-53 220
25 TraesCS7B01G089100 chr1A 96.212 132 5 0 1991 2122 487800122 487799991 1.720000e-52 217
26 TraesCS7B01G089100 chr2A 95.276 127 6 0 1991 2117 36139465 36139591 4.810000e-48 202
27 TraesCS7B01G089100 chr6D 86.740 181 22 2 2247 2425 350230849 350231029 1.730000e-47 200
28 TraesCS7B01G089100 chr6D 86.188 181 23 2 2247 2425 350257847 350258027 8.050000e-46 195
29 TraesCS7B01G089100 chr6B 85.165 182 23 4 2247 2425 564211980 564212160 1.740000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G089100 chr7B 103979296 103982143 2847 True 5260.000000 5260 100.000000 1 2848 1 chr7B.!!$R1 2847
1 TraesCS7B01G089100 chr7D 138498094 138501311 3217 True 1140.333333 1881 90.710333 5 2682 3 chr7D.!!$R2 2677
2 TraesCS7B01G089100 chr7A 138535664 138538403 2739 True 819.500000 1661 89.924500 26 2680 4 chr7A.!!$R2 2654
3 TraesCS7B01G089100 chr7A 138668709 138670687 1978 True 338.750000 436 87.699250 887 2530 4 chr7A.!!$R3 1643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 565 0.392998 AGCACTTCCCATACAAGCGG 60.393 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 3154 0.106719 CCCGGTTGGACCATATGCTT 60.107 55.0 0.0 0.0 38.47 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 71 1.802880 GCATGTGGTAGGCTAGTGTCG 60.803 57.143 0.00 0.00 32.24 4.35
78 82 4.350620 AGTGTCGCTGCACTGAAG 57.649 55.556 8.87 0.00 46.72 3.02
92 96 3.567164 GCACTGAAGTAATGCAGGCATAT 59.433 43.478 7.26 1.24 39.23 1.78
121 125 9.178758 GATTCAGATTCCTAACCAACTTATGTT 57.821 33.333 0.00 0.00 36.75 2.71
122 126 8.934023 TTCAGATTCCTAACCAACTTATGTTT 57.066 30.769 0.00 0.00 33.52 2.83
123 127 8.561738 TCAGATTCCTAACCAACTTATGTTTC 57.438 34.615 0.00 0.00 33.52 2.78
124 128 8.383175 TCAGATTCCTAACCAACTTATGTTTCT 58.617 33.333 0.00 0.00 33.52 2.52
125 129 9.014297 CAGATTCCTAACCAACTTATGTTTCTT 57.986 33.333 0.00 0.00 33.52 2.52
126 130 9.014297 AGATTCCTAACCAACTTATGTTTCTTG 57.986 33.333 0.00 0.00 33.52 3.02
127 131 8.706322 ATTCCTAACCAACTTATGTTTCTTGT 57.294 30.769 0.00 0.00 33.52 3.16
128 132 7.504924 TCCTAACCAACTTATGTTTCTTGTG 57.495 36.000 0.00 0.00 33.52 3.33
129 133 6.016610 TCCTAACCAACTTATGTTTCTTGTGC 60.017 38.462 0.00 0.00 33.52 4.57
130 134 4.584327 ACCAACTTATGTTTCTTGTGCC 57.416 40.909 0.00 0.00 33.52 5.01
131 135 3.320826 ACCAACTTATGTTTCTTGTGCCC 59.679 43.478 0.00 0.00 33.52 5.36
132 136 3.320541 CCAACTTATGTTTCTTGTGCCCA 59.679 43.478 0.00 0.00 33.52 5.36
133 137 4.202202 CCAACTTATGTTTCTTGTGCCCAA 60.202 41.667 0.00 0.00 33.52 4.12
134 138 4.584327 ACTTATGTTTCTTGTGCCCAAC 57.416 40.909 0.00 0.00 0.00 3.77
135 139 3.004315 ACTTATGTTTCTTGTGCCCAACG 59.996 43.478 0.00 0.00 0.00 4.10
136 140 0.673437 ATGTTTCTTGTGCCCAACGG 59.327 50.000 0.00 0.00 0.00 4.44
138 142 1.076632 TTTCTTGTGCCCAACGGGT 60.077 52.632 0.06 0.00 46.51 5.28
139 143 1.104577 TTTCTTGTGCCCAACGGGTC 61.105 55.000 0.06 0.00 46.51 4.46
159 183 6.347888 CGGGTCTCTTTTAAAGCGATGTTTAA 60.348 38.462 0.61 0.00 31.46 1.52
216 240 1.005156 TGCATCTACGTGCTGCACA 60.005 52.632 29.86 12.91 45.27 4.57
253 280 7.559335 TGGCTTATGACAGATATAGGTTGAT 57.441 36.000 0.00 0.00 0.00 2.57
265 292 8.210946 CAGATATAGGTTGATCTTTTGTACCCA 58.789 37.037 0.00 0.00 29.73 4.51
267 294 8.747538 ATATAGGTTGATCTTTTGTACCCAAC 57.252 34.615 0.00 0.00 34.75 3.77
287 318 6.444633 CCAACTACAATGGATACTAGTACGG 58.555 44.000 4.31 0.00 40.56 4.02
358 390 1.807142 GTCTTCCTGCGGGAGAAAAAG 59.193 52.381 15.42 9.18 43.29 2.27
359 391 1.697432 TCTTCCTGCGGGAGAAAAAGA 59.303 47.619 15.42 11.59 43.29 2.52
362 394 1.909302 TCCTGCGGGAGAAAAAGAGAT 59.091 47.619 11.27 0.00 36.57 2.75
454 487 6.645415 CACTGACCCAGTCCGTAAATAATATC 59.355 42.308 0.00 0.00 43.43 1.63
503 536 5.520632 TCTAGATGCGCATGTACTTAGTTC 58.479 41.667 30.76 10.16 0.00 3.01
532 565 0.392998 AGCACTTCCCATACAAGCGG 60.393 55.000 0.00 0.00 0.00 5.52
553 586 5.233263 GCGGAAGTGCTTTTGTCAATTAAAA 59.767 36.000 0.00 0.00 0.00 1.52
554 587 6.562086 GCGGAAGTGCTTTTGTCAATTAAAAG 60.562 38.462 7.33 7.33 44.16 2.27
555 588 6.475402 CGGAAGTGCTTTTGTCAATTAAAAGT 59.525 34.615 11.64 0.00 43.56 2.66
556 589 7.515059 CGGAAGTGCTTTTGTCAATTAAAAGTG 60.515 37.037 11.64 0.00 43.56 3.16
672 705 4.687948 TCGCAGTTTCTCTTCTGAAGAATG 59.312 41.667 19.73 10.32 37.02 2.67
730 763 4.913355 TCTGGATAATTTGGCTCCCATCTA 59.087 41.667 0.00 0.00 31.53 1.98
873 1515 5.053811 GGTTGGTCCATTTGGTAAAACTTG 58.946 41.667 0.00 0.00 36.34 3.16
939 1581 7.575414 TGCTAAACATTTTCAGGACTGTAAA 57.425 32.000 6.58 6.58 35.04 2.01
1102 1744 3.695830 TCTCACGCCTGTTTCCTTTAT 57.304 42.857 0.00 0.00 0.00 1.40
1261 1985 0.691904 TGCCATCCACAGACATGACA 59.308 50.000 0.00 0.00 0.00 3.58
1328 2055 9.639563 TTCTTCTCAAGAGTACTAGATCATGAT 57.360 33.333 8.25 8.25 39.03 2.45
1355 2084 3.123050 GTCCACATGTTGGCAACTTTTC 58.877 45.455 28.71 4.88 46.47 2.29
1369 2101 6.376018 TGGCAACTTTTCCAGTATTACATACC 59.624 38.462 0.00 0.00 32.94 2.73
1410 2143 7.945109 AGCTCAAATTCCTTAATAGGGGATAAC 59.055 37.037 0.00 0.00 42.26 1.89
1548 2281 2.237143 CTCAGCCCAACAAGGTGATCTA 59.763 50.000 0.00 0.00 40.66 1.98
1861 2770 5.699915 ACTCACAGTGATGTCTCTGAATTTG 59.300 40.000 16.41 6.59 39.17 2.32
1863 2772 6.057533 TCACAGTGATGTCTCTGAATTTGTT 58.942 36.000 16.41 0.00 39.17 2.83
1868 2777 6.073548 AGTGATGTCTCTGAATTTGTTTCGTC 60.074 38.462 0.00 0.00 37.13 4.20
1880 3154 3.378911 TGTTTCGTCACTGATGCTACA 57.621 42.857 0.00 0.00 0.00 2.74
1916 3193 2.355310 CCGGGCAGGACATAACTTACAA 60.355 50.000 0.00 0.00 45.00 2.41
1931 3208 0.036765 TACAATCTTCCGCACGGCTT 60.037 50.000 3.66 0.00 34.68 4.35
1933 3210 0.454957 CAATCTTCCGCACGGCTTTG 60.455 55.000 3.66 1.97 34.68 2.77
1935 3212 2.748058 ATCTTCCGCACGGCTTTGGT 62.748 55.000 3.66 0.00 34.68 3.67
1937 3214 3.469863 TTCCGCACGGCTTTGGTCT 62.470 57.895 3.66 0.00 34.68 3.85
1938 3215 3.726517 CCGCACGGCTTTGGTCTG 61.727 66.667 0.00 0.00 0.00 3.51
1939 3216 2.664851 CGCACGGCTTTGGTCTGA 60.665 61.111 0.00 0.00 0.00 3.27
1940 3217 2.250939 CGCACGGCTTTGGTCTGAA 61.251 57.895 0.00 0.00 0.00 3.02
1941 3218 1.577328 CGCACGGCTTTGGTCTGAAT 61.577 55.000 0.00 0.00 0.00 2.57
1942 3219 0.598065 GCACGGCTTTGGTCTGAATT 59.402 50.000 0.00 0.00 0.00 2.17
1943 3220 1.810151 GCACGGCTTTGGTCTGAATTA 59.190 47.619 0.00 0.00 0.00 1.40
1947 3506 4.634004 CACGGCTTTGGTCTGAATTATGTA 59.366 41.667 0.00 0.00 0.00 2.29
1949 3508 4.876107 CGGCTTTGGTCTGAATTATGTACT 59.124 41.667 0.00 0.00 0.00 2.73
1957 3516 5.364157 GGTCTGAATTATGTACTCCCTCTGT 59.636 44.000 0.00 0.00 0.00 3.41
1959 3518 5.598830 TCTGAATTATGTACTCCCTCTGTCC 59.401 44.000 0.00 0.00 0.00 4.02
1964 3523 2.257207 TGTACTCCCTCTGTCCCAAAG 58.743 52.381 0.00 0.00 0.00 2.77
1965 3524 2.158219 TGTACTCCCTCTGTCCCAAAGA 60.158 50.000 0.00 0.00 0.00 2.52
1966 3525 1.650528 ACTCCCTCTGTCCCAAAGAG 58.349 55.000 0.00 0.00 40.79 2.85
1968 3527 0.178891 TCCCTCTGTCCCAAAGAGCT 60.179 55.000 0.00 0.00 39.94 4.09
1969 3528 0.695347 CCCTCTGTCCCAAAGAGCTT 59.305 55.000 0.00 0.00 39.94 3.74
1970 3529 1.339535 CCCTCTGTCCCAAAGAGCTTC 60.340 57.143 0.00 0.00 39.94 3.86
1971 3530 1.627834 CCTCTGTCCCAAAGAGCTTCT 59.372 52.381 0.00 0.00 39.94 2.85
1972 3531 2.039613 CCTCTGTCCCAAAGAGCTTCTT 59.960 50.000 0.00 0.00 39.94 2.52
1973 3532 3.261897 CCTCTGTCCCAAAGAGCTTCTTA 59.738 47.826 0.00 0.00 39.94 2.10
1974 3533 4.502962 CTCTGTCCCAAAGAGCTTCTTAG 58.497 47.826 0.00 0.00 35.27 2.18
1975 3534 4.160329 TCTGTCCCAAAGAGCTTCTTAGA 58.840 43.478 0.00 0.00 35.27 2.10
1976 3535 4.780021 TCTGTCCCAAAGAGCTTCTTAGAT 59.220 41.667 0.00 0.00 35.27 1.98
1977 3536 5.249393 TCTGTCCCAAAGAGCTTCTTAGATT 59.751 40.000 0.00 0.00 35.27 2.40
1978 3537 5.880901 TGTCCCAAAGAGCTTCTTAGATTT 58.119 37.500 0.00 0.00 35.27 2.17
1979 3538 5.707298 TGTCCCAAAGAGCTTCTTAGATTTG 59.293 40.000 0.00 0.00 35.27 2.32
1980 3539 5.707764 GTCCCAAAGAGCTTCTTAGATTTGT 59.292 40.000 0.00 0.00 35.27 2.83
1981 3540 5.940470 TCCCAAAGAGCTTCTTAGATTTGTC 59.060 40.000 0.00 0.00 35.27 3.18
1982 3541 5.942826 CCCAAAGAGCTTCTTAGATTTGTCT 59.057 40.000 0.00 0.00 35.27 3.41
1983 3542 7.038302 TCCCAAAGAGCTTCTTAGATTTGTCTA 60.038 37.037 0.00 0.00 35.27 2.59
1984 3543 7.065204 CCCAAAGAGCTTCTTAGATTTGTCTAC 59.935 40.741 0.00 0.00 35.27 2.59
1985 3544 7.604164 CCAAAGAGCTTCTTAGATTTGTCTACA 59.396 37.037 0.00 0.00 35.27 2.74
1986 3545 8.655092 CAAAGAGCTTCTTAGATTTGTCTACAG 58.345 37.037 0.00 0.00 35.27 2.74
1987 3546 7.710676 AGAGCTTCTTAGATTTGTCTACAGA 57.289 36.000 0.00 0.00 0.00 3.41
1988 3547 8.305046 AGAGCTTCTTAGATTTGTCTACAGAT 57.695 34.615 0.00 0.00 0.00 2.90
1989 3548 8.196771 AGAGCTTCTTAGATTTGTCTACAGATG 58.803 37.037 0.00 0.00 0.00 2.90
1990 3549 7.846066 AGCTTCTTAGATTTGTCTACAGATGT 58.154 34.615 0.00 0.00 0.00 3.06
1991 3550 8.972127 AGCTTCTTAGATTTGTCTACAGATGTA 58.028 33.333 0.00 0.00 0.00 2.29
1992 3551 9.026074 GCTTCTTAGATTTGTCTACAGATGTAC 57.974 37.037 0.00 0.00 0.00 2.90
1995 3554 8.904834 TCTTAGATTTGTCTACAGATGTACTCC 58.095 37.037 0.00 0.00 0.00 3.85
1996 3555 6.472686 AGATTTGTCTACAGATGTACTCCC 57.527 41.667 0.00 0.00 0.00 4.30
1997 3556 6.198639 AGATTTGTCTACAGATGTACTCCCT 58.801 40.000 0.00 0.00 0.00 4.20
1998 3557 5.916661 TTTGTCTACAGATGTACTCCCTC 57.083 43.478 0.00 0.00 0.00 4.30
1999 3558 3.899726 TGTCTACAGATGTACTCCCTCC 58.100 50.000 0.00 0.00 0.00 4.30
2000 3559 2.879646 GTCTACAGATGTACTCCCTCCG 59.120 54.545 0.00 0.00 0.00 4.63
2001 3560 2.508716 TCTACAGATGTACTCCCTCCGT 59.491 50.000 0.00 0.00 0.00 4.69
2002 3561 2.233305 ACAGATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
2003 3562 2.100989 ACAGATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
2004 3563 1.409427 CAGATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
2005 3564 0.384669 GATGTACTCCCTCCGTTCCG 59.615 60.000 0.00 0.00 0.00 4.30
2006 3565 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
2007 3566 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
2008 3567 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2009 3568 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2010 3569 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2011 3570 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2012 3571 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2013 3572 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2014 3573 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2015 3574 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2016 3575 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2017 3576 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2018 3577 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2019 3578 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
2020 3579 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
2021 3580 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
2022 3581 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
2023 3582 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
2024 3583 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
2025 3584 9.079833 CGTTCCGAATTACTTGTCTTAGATTTA 57.920 33.333 0.00 0.00 0.00 1.40
2059 3618 8.023021 TGGATGTATCTAGCACTAAAATGAGT 57.977 34.615 0.00 0.00 0.00 3.41
2060 3619 8.144478 TGGATGTATCTAGCACTAAAATGAGTC 58.856 37.037 0.00 0.00 0.00 3.36
2061 3620 8.364142 GGATGTATCTAGCACTAAAATGAGTCT 58.636 37.037 0.00 0.00 0.00 3.24
2064 3623 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
2067 3626 7.429633 TCTAGCACTAAAATGAGTCTAGATGC 58.570 38.462 0.00 0.00 34.65 3.91
2068 3627 5.982356 AGCACTAAAATGAGTCTAGATGCA 58.018 37.500 9.55 5.43 0.00 3.96
2069 3628 6.590068 AGCACTAAAATGAGTCTAGATGCAT 58.410 36.000 0.00 0.00 0.00 3.96
2070 3629 6.705381 AGCACTAAAATGAGTCTAGATGCATC 59.295 38.462 19.37 19.37 0.00 3.91
2071 3630 6.073331 GCACTAAAATGAGTCTAGATGCATCC 60.073 42.308 23.06 7.80 0.00 3.51
2072 3631 6.145209 CACTAAAATGAGTCTAGATGCATCCG 59.855 42.308 23.06 14.43 0.00 4.18
2073 3632 4.679373 AAATGAGTCTAGATGCATCCGT 57.321 40.909 23.06 8.39 0.00 4.69
2074 3633 5.791336 AAATGAGTCTAGATGCATCCGTA 57.209 39.130 23.06 9.13 0.00 4.02
2075 3634 5.991933 AATGAGTCTAGATGCATCCGTAT 57.008 39.130 23.06 7.24 0.00 3.06
2076 3635 5.574891 ATGAGTCTAGATGCATCCGTATC 57.425 43.478 23.06 14.66 34.68 2.24
2077 3636 4.657013 TGAGTCTAGATGCATCCGTATCT 58.343 43.478 23.06 14.44 45.39 1.98
2078 3637 5.805728 TGAGTCTAGATGCATCCGTATCTA 58.194 41.667 23.06 7.64 42.15 1.98
2084 3643 5.791336 AGATGCATCCGTATCTAGACAAA 57.209 39.130 23.06 0.00 42.15 2.83
2089 3648 5.163353 TGCATCCGTATCTAGACAAATCCAA 60.163 40.000 0.00 0.00 0.00 3.53
2096 3655 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
2097 3656 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
2098 3657 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2101 3660 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
2104 3663 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
2122 3681 1.962100 GGAACGGAGGGAGTATGTAGG 59.038 57.143 0.00 0.00 0.00 3.18
2123 3682 1.340568 GAACGGAGGGAGTATGTAGGC 59.659 57.143 0.00 0.00 0.00 3.93
2124 3683 0.556747 ACGGAGGGAGTATGTAGGCT 59.443 55.000 0.00 0.00 0.00 4.58
2125 3684 1.063114 ACGGAGGGAGTATGTAGGCTT 60.063 52.381 0.00 0.00 0.00 4.35
2126 3685 2.040178 CGGAGGGAGTATGTAGGCTTT 58.960 52.381 0.00 0.00 0.00 3.51
2127 3686 2.434702 CGGAGGGAGTATGTAGGCTTTT 59.565 50.000 0.00 0.00 0.00 2.27
2128 3687 3.492829 CGGAGGGAGTATGTAGGCTTTTC 60.493 52.174 0.00 0.00 0.00 2.29
2129 3688 3.492829 GGAGGGAGTATGTAGGCTTTTCG 60.493 52.174 0.00 0.00 0.00 3.46
2130 3689 2.434702 AGGGAGTATGTAGGCTTTTCGG 59.565 50.000 0.00 0.00 0.00 4.30
2131 3690 2.484947 GGGAGTATGTAGGCTTTTCGGG 60.485 54.545 0.00 0.00 0.00 5.14
2132 3691 2.433239 GGAGTATGTAGGCTTTTCGGGA 59.567 50.000 0.00 0.00 0.00 5.14
2133 3692 3.455327 GAGTATGTAGGCTTTTCGGGAC 58.545 50.000 0.00 0.00 0.00 4.46
2134 3693 2.835764 AGTATGTAGGCTTTTCGGGACA 59.164 45.455 0.00 0.00 0.00 4.02
2231 3807 7.970061 GCTTGAAATCTTGCACAACAGATAATA 59.030 33.333 0.00 0.00 0.00 0.98
2415 3993 3.306780 CCGTCCAGGTAAGTGAGTTTCAT 60.307 47.826 0.00 0.00 34.51 2.57
2458 4037 4.599047 AATAATCAGCTCTCCTTCCGAG 57.401 45.455 0.00 0.00 40.30 4.63
2499 4078 2.437281 TGGGACTAAAAACGTGGGTACA 59.563 45.455 0.00 0.00 0.00 2.90
2513 4092 2.092323 GGGTACAAAGAATCCTGGTGC 58.908 52.381 0.00 0.00 0.00 5.01
2530 4110 2.751837 CCTTCCGGAAAGCTGGGC 60.752 66.667 19.39 0.00 41.20 5.36
2548 4128 4.465512 GCGGCGTCGTCTTCGGTA 62.466 66.667 12.58 0.00 38.89 4.02
2563 4143 3.436577 TCGGTAATTAGGGCCACAAAA 57.563 42.857 6.18 0.00 0.00 2.44
2584 4164 2.656069 GCTAACTCAGGCCCACCGA 61.656 63.158 0.00 0.00 42.76 4.69
2585 4165 1.972660 GCTAACTCAGGCCCACCGAT 61.973 60.000 0.00 0.00 42.76 4.18
2586 4166 0.105039 CTAACTCAGGCCCACCGATC 59.895 60.000 0.00 0.00 42.76 3.69
2615 4208 1.136565 CCCAATAAGCCGCAACGTG 59.863 57.895 0.00 0.00 0.00 4.49
2616 4209 1.582610 CCCAATAAGCCGCAACGTGT 61.583 55.000 0.00 0.00 0.00 4.49
2682 4275 1.153353 TCCTTCGATTGCGTTCCAAC 58.847 50.000 0.00 0.00 35.99 3.77
2683 4276 0.871722 CCTTCGATTGCGTTCCAACA 59.128 50.000 0.00 0.00 35.99 3.33
2684 4277 1.135972 CCTTCGATTGCGTTCCAACAG 60.136 52.381 0.00 0.00 35.99 3.16
2685 4278 0.871722 TTCGATTGCGTTCCAACAGG 59.128 50.000 0.00 0.00 35.99 4.00
2686 4279 0.034198 TCGATTGCGTTCCAACAGGA 59.966 50.000 0.00 0.00 35.99 3.86
2687 4280 0.443869 CGATTGCGTTCCAACAGGAG 59.556 55.000 0.00 0.00 35.99 3.69
2688 4281 0.169009 GATTGCGTTCCAACAGGAGC 59.831 55.000 0.00 0.00 35.99 4.70
2689 4282 1.244019 ATTGCGTTCCAACAGGAGCC 61.244 55.000 0.00 0.00 35.99 4.70
2690 4283 3.056328 GCGTTCCAACAGGAGCCC 61.056 66.667 0.00 0.00 31.86 5.19
2691 4284 2.750350 CGTTCCAACAGGAGCCCT 59.250 61.111 0.00 0.00 31.86 5.19
2692 4285 1.376037 CGTTCCAACAGGAGCCCTC 60.376 63.158 0.00 0.00 31.86 4.30
2704 4297 1.379527 GAGCCCTCCATAAAACACGG 58.620 55.000 0.00 0.00 0.00 4.94
2705 4298 0.679960 AGCCCTCCATAAAACACGGC 60.680 55.000 0.00 0.00 35.08 5.68
2706 4299 1.988834 GCCCTCCATAAAACACGGCG 61.989 60.000 4.80 4.80 0.00 6.46
2707 4300 0.675522 CCCTCCATAAAACACGGCGT 60.676 55.000 6.77 6.77 0.00 5.68
2708 4301 0.446222 CCTCCATAAAACACGGCGTG 59.554 55.000 35.89 35.89 39.75 5.34
2709 4302 0.179200 CTCCATAAAACACGGCGTGC 60.179 55.000 37.21 0.00 36.98 5.34
2710 4303 0.885150 TCCATAAAACACGGCGTGCA 60.885 50.000 37.21 21.21 36.98 4.57
2711 4304 0.727793 CCATAAAACACGGCGTGCAC 60.728 55.000 37.21 6.82 36.98 4.57
2712 4305 0.040870 CATAAAACACGGCGTGCACA 60.041 50.000 37.21 21.20 36.98 4.57
2713 4306 0.663688 ATAAAACACGGCGTGCACAA 59.336 45.000 37.21 21.86 36.98 3.33
2714 4307 0.450583 TAAAACACGGCGTGCACAAA 59.549 45.000 37.21 17.93 36.98 2.83
2715 4308 0.388649 AAAACACGGCGTGCACAAAA 60.389 45.000 37.21 0.00 36.98 2.44
2716 4309 1.073768 AAACACGGCGTGCACAAAAC 61.074 50.000 37.21 2.50 36.98 2.43
2717 4310 2.101185 CACGGCGTGCACAAAACA 59.899 55.556 28.30 0.00 0.00 2.83
2718 4311 1.515088 CACGGCGTGCACAAAACAA 60.515 52.632 28.30 0.00 0.00 2.83
2719 4312 1.226547 ACGGCGTGCACAAAACAAG 60.227 52.632 13.76 0.00 0.00 3.16
2720 4313 1.063327 CGGCGTGCACAAAACAAGA 59.937 52.632 18.64 0.00 0.00 3.02
2721 4314 0.929824 CGGCGTGCACAAAACAAGAG 60.930 55.000 18.64 0.00 0.00 2.85
2722 4315 1.208642 GGCGTGCACAAAACAAGAGC 61.209 55.000 18.64 8.33 0.00 4.09
2723 4316 1.531522 GCGTGCACAAAACAAGAGCG 61.532 55.000 18.64 0.00 0.00 5.03
2724 4317 0.929824 CGTGCACAAAACAAGAGCGG 60.930 55.000 18.64 0.00 0.00 5.52
2725 4318 1.065600 TGCACAAAACAAGAGCGGC 59.934 52.632 0.00 0.00 0.00 6.53
2726 4319 2.010817 GCACAAAACAAGAGCGGCG 61.011 57.895 0.51 0.51 0.00 6.46
2727 4320 1.370414 CACAAAACAAGAGCGGCGG 60.370 57.895 9.78 0.00 0.00 6.13
2728 4321 2.429069 CAAAACAAGAGCGGCGGC 60.429 61.111 9.78 8.43 40.37 6.53
2729 4322 4.025401 AAAACAAGAGCGGCGGCG 62.025 61.111 28.70 28.70 46.35 6.46
2730 4323 4.980805 AAACAAGAGCGGCGGCGA 62.981 61.111 36.87 0.00 46.35 5.54
2752 4345 2.202892 GACCGATCGACCTTGCCC 60.203 66.667 18.66 0.00 0.00 5.36
2753 4346 4.143333 ACCGATCGACCTTGCCCG 62.143 66.667 18.66 0.00 0.00 6.13
2754 4347 4.143333 CCGATCGACCTTGCCCGT 62.143 66.667 18.66 0.00 0.00 5.28
2755 4348 2.885644 CGATCGACCTTGCCCGTG 60.886 66.667 10.26 0.00 0.00 4.94
2756 4349 2.511600 GATCGACCTTGCCCGTGG 60.512 66.667 0.00 0.00 0.00 4.94
2757 4350 3.310860 GATCGACCTTGCCCGTGGT 62.311 63.158 0.00 0.00 39.60 4.16
2758 4351 3.605749 ATCGACCTTGCCCGTGGTG 62.606 63.158 0.00 0.00 36.59 4.17
2759 4352 4.308458 CGACCTTGCCCGTGGTGA 62.308 66.667 0.00 0.00 36.59 4.02
2760 4353 2.668550 GACCTTGCCCGTGGTGAC 60.669 66.667 0.00 0.00 36.59 3.67
2761 4354 3.168528 ACCTTGCCCGTGGTGACT 61.169 61.111 0.00 0.00 34.90 3.41
2762 4355 2.358737 CCTTGCCCGTGGTGACTC 60.359 66.667 0.00 0.00 0.00 3.36
2763 4356 2.743718 CTTGCCCGTGGTGACTCT 59.256 61.111 0.00 0.00 0.00 3.24
2764 4357 1.071471 CTTGCCCGTGGTGACTCTT 59.929 57.895 0.00 0.00 0.00 2.85
2765 4358 0.951040 CTTGCCCGTGGTGACTCTTC 60.951 60.000 0.00 0.00 0.00 2.87
2766 4359 2.432628 GCCCGTGGTGACTCTTCG 60.433 66.667 0.00 0.00 0.00 3.79
2767 4360 2.432628 CCCGTGGTGACTCTTCGC 60.433 66.667 0.00 0.00 0.00 4.70
2768 4361 2.651361 CCGTGGTGACTCTTCGCT 59.349 61.111 0.00 0.00 32.36 4.93
2769 4362 1.592400 CCCGTGGTGACTCTTCGCTA 61.592 60.000 0.00 0.00 32.36 4.26
2770 4363 0.179161 CCGTGGTGACTCTTCGCTAG 60.179 60.000 0.00 0.00 32.36 3.42
2771 4364 0.803117 CGTGGTGACTCTTCGCTAGA 59.197 55.000 0.00 0.00 32.36 2.43
2779 4372 2.314561 CTCTTCGCTAGAGCTGATCG 57.685 55.000 0.00 0.00 43.73 3.69
2780 4373 0.309302 TCTTCGCTAGAGCTGATCGC 59.691 55.000 0.00 1.92 39.32 4.58
2781 4374 0.996229 CTTCGCTAGAGCTGATCGCG 60.996 60.000 0.00 0.00 45.59 5.87
2782 4375 2.393989 TTCGCTAGAGCTGATCGCGG 62.394 60.000 6.13 0.00 45.59 6.46
2789 4382 2.278596 GCTGATCGCGGCTACGAA 60.279 61.111 6.13 0.00 46.59 3.85
2790 4383 2.296480 GCTGATCGCGGCTACGAAG 61.296 63.158 6.13 1.83 46.59 3.79
2791 4384 1.355563 CTGATCGCGGCTACGAAGA 59.644 57.895 6.13 0.00 46.59 2.87
2792 4385 0.248498 CTGATCGCGGCTACGAAGAA 60.248 55.000 6.13 0.00 46.59 2.52
2793 4386 0.171679 TGATCGCGGCTACGAAGAAA 59.828 50.000 6.13 0.00 46.59 2.52
2794 4387 0.571197 GATCGCGGCTACGAAGAAAC 59.429 55.000 6.13 0.00 46.59 2.78
2795 4388 0.804933 ATCGCGGCTACGAAGAAACC 60.805 55.000 6.13 0.00 46.59 3.27
2796 4389 2.450345 CGCGGCTACGAAGAAACCC 61.450 63.158 0.00 0.00 44.60 4.11
2797 4390 1.375013 GCGGCTACGAAGAAACCCA 60.375 57.895 0.00 0.00 44.60 4.51
2798 4391 0.952010 GCGGCTACGAAGAAACCCAA 60.952 55.000 0.00 0.00 44.60 4.12
2799 4392 1.076332 CGGCTACGAAGAAACCCAAG 58.924 55.000 0.00 0.00 44.60 3.61
2800 4393 1.450025 GGCTACGAAGAAACCCAAGG 58.550 55.000 0.00 0.00 0.00 3.61
2801 4394 0.803117 GCTACGAAGAAACCCAAGGC 59.197 55.000 0.00 0.00 0.00 4.35
2802 4395 1.076332 CTACGAAGAAACCCAAGGCG 58.924 55.000 0.00 0.00 0.00 5.52
2803 4396 0.680618 TACGAAGAAACCCAAGGCGA 59.319 50.000 0.00 0.00 0.00 5.54
2804 4397 0.602905 ACGAAGAAACCCAAGGCGAG 60.603 55.000 0.00 0.00 0.00 5.03
2805 4398 1.298859 CGAAGAAACCCAAGGCGAGG 61.299 60.000 0.00 0.00 0.00 4.63
2806 4399 1.587043 GAAGAAACCCAAGGCGAGGC 61.587 60.000 0.00 0.00 0.00 4.70
2807 4400 3.431725 GAAACCCAAGGCGAGGCG 61.432 66.667 0.00 0.00 0.00 5.52
2808 4401 4.265056 AAACCCAAGGCGAGGCGT 62.265 61.111 0.00 0.00 0.00 5.68
2809 4402 4.699522 AACCCAAGGCGAGGCGTC 62.700 66.667 0.00 0.00 0.00 5.19
2811 4404 4.697756 CCCAAGGCGAGGCGTCAA 62.698 66.667 7.26 0.00 32.13 3.18
2812 4405 2.668212 CCAAGGCGAGGCGTCAAA 60.668 61.111 7.26 0.00 32.13 2.69
2813 4406 2.680913 CCAAGGCGAGGCGTCAAAG 61.681 63.158 7.26 0.00 32.13 2.77
2814 4407 1.667830 CAAGGCGAGGCGTCAAAGA 60.668 57.895 7.26 0.00 32.13 2.52
2815 4408 1.668151 AAGGCGAGGCGTCAAAGAC 60.668 57.895 7.26 0.00 32.13 3.01
2816 4409 3.119096 GGCGAGGCGTCAAAGACC 61.119 66.667 7.26 0.00 0.00 3.85
2817 4410 2.357034 GCGAGGCGTCAAAGACCA 60.357 61.111 7.26 0.00 0.00 4.02
2818 4411 2.383527 GCGAGGCGTCAAAGACCAG 61.384 63.158 7.26 0.00 0.00 4.00
2819 4412 2.383527 CGAGGCGTCAAAGACCAGC 61.384 63.158 7.26 0.00 0.00 4.85
2821 4414 2.281484 GGCGTCAAAGACCAGCCA 60.281 61.111 10.05 0.00 46.48 4.75
2822 4415 1.675641 GGCGTCAAAGACCAGCCAT 60.676 57.895 10.05 0.00 46.48 4.40
2823 4416 1.503542 GCGTCAAAGACCAGCCATG 59.496 57.895 0.00 0.00 0.00 3.66
2833 4426 2.767536 CCAGCCATGGTAACGACTG 58.232 57.895 14.67 10.52 42.17 3.51
2834 4427 0.249120 CCAGCCATGGTAACGACTGA 59.751 55.000 14.67 0.00 42.17 3.41
2835 4428 1.359848 CAGCCATGGTAACGACTGAC 58.640 55.000 14.67 0.00 42.51 3.51
2836 4429 0.973632 AGCCATGGTAACGACTGACA 59.026 50.000 14.67 0.00 42.51 3.58
2837 4430 1.555075 AGCCATGGTAACGACTGACAT 59.445 47.619 14.67 0.00 42.51 3.06
2838 4431 1.665679 GCCATGGTAACGACTGACATG 59.334 52.381 14.67 0.00 38.82 3.21
2839 4432 2.676750 GCCATGGTAACGACTGACATGA 60.677 50.000 14.67 0.00 40.92 3.07
2840 4433 3.190079 CCATGGTAACGACTGACATGAG 58.810 50.000 2.57 0.00 40.92 2.90
2841 4434 3.190079 CATGGTAACGACTGACATGAGG 58.810 50.000 0.00 0.00 40.92 3.86
2842 4435 2.521126 TGGTAACGACTGACATGAGGA 58.479 47.619 0.00 0.00 42.51 3.71
2843 4436 3.096852 TGGTAACGACTGACATGAGGAT 58.903 45.455 0.00 0.00 42.51 3.24
2844 4437 3.119137 TGGTAACGACTGACATGAGGATG 60.119 47.826 0.00 0.00 42.51 3.51
2845 4438 2.680312 AACGACTGACATGAGGATGG 57.320 50.000 0.00 0.00 33.39 3.51
2846 4439 0.176680 ACGACTGACATGAGGATGGC 59.823 55.000 0.00 0.00 38.23 4.40
2847 4440 0.463204 CGACTGACATGAGGATGGCT 59.537 55.000 0.00 0.00 38.60 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.574013 CGATGAAGCTCTGGATTAAAAGCT 59.426 41.667 0.00 0.00 46.66 3.74
5 6 4.787882 GCGATGAAGCTCTGGATTAAAAGC 60.788 45.833 0.00 0.00 34.95 3.51
6 7 4.574013 AGCGATGAAGCTCTGGATTAAAAG 59.426 41.667 0.00 0.00 45.67 2.27
8 9 4.142609 AGCGATGAAGCTCTGGATTAAA 57.857 40.909 0.00 0.00 45.67 1.52
9 10 3.827008 AGCGATGAAGCTCTGGATTAA 57.173 42.857 0.00 0.00 45.67 1.40
19 20 2.787680 GCAATCATTTGAGCGATGAAGC 59.212 45.455 0.00 0.00 37.11 3.86
20 21 4.288670 AGCAATCATTTGAGCGATGAAG 57.711 40.909 0.00 0.00 37.11 3.02
21 22 4.260907 GCTAGCAATCATTTGAGCGATGAA 60.261 41.667 10.63 0.00 37.11 2.57
22 23 3.249320 GCTAGCAATCATTTGAGCGATGA 59.751 43.478 10.63 0.00 37.86 2.92
23 24 3.250280 AGCTAGCAATCATTTGAGCGATG 59.750 43.478 18.83 0.00 37.61 3.84
24 25 3.474600 AGCTAGCAATCATTTGAGCGAT 58.525 40.909 18.83 0.00 37.61 4.58
78 82 5.936372 TCTGAATCTGATATGCCTGCATTAC 59.064 40.000 10.27 5.73 37.82 1.89
92 96 6.627087 AGTTGGTTAGGAATCTGAATCTGA 57.373 37.500 0.00 0.00 0.00 3.27
130 134 2.095919 CGCTTTAAAAGAGACCCGTTGG 60.096 50.000 0.00 0.00 37.80 3.77
131 135 2.803956 TCGCTTTAAAAGAGACCCGTTG 59.196 45.455 0.00 0.00 32.19 4.10
132 136 3.116079 TCGCTTTAAAAGAGACCCGTT 57.884 42.857 0.00 0.00 32.19 4.44
133 137 2.825861 TCGCTTTAAAAGAGACCCGT 57.174 45.000 0.00 0.00 32.19 5.28
134 138 3.000727 ACATCGCTTTAAAAGAGACCCG 58.999 45.455 0.00 0.00 40.14 5.28
135 139 5.372547 AAACATCGCTTTAAAAGAGACCC 57.627 39.130 0.00 0.00 40.14 4.46
136 140 7.021790 CCTTAAACATCGCTTTAAAAGAGACC 58.978 38.462 0.00 0.00 40.14 3.85
137 141 7.534239 CACCTTAAACATCGCTTTAAAAGAGAC 59.466 37.037 0.00 0.00 40.14 3.36
138 142 7.308348 CCACCTTAAACATCGCTTTAAAAGAGA 60.308 37.037 0.00 0.00 41.55 3.10
139 143 6.801862 CCACCTTAAACATCGCTTTAAAAGAG 59.198 38.462 0.00 0.00 0.00 2.85
159 183 4.814771 CAGTTTCGAGTAAGTTTTCCACCT 59.185 41.667 0.00 0.00 0.00 4.00
216 240 5.071250 TGTCATAAGCCAATCCCTAACGTAT 59.929 40.000 0.00 0.00 0.00 3.06
253 280 5.942961 TCCATTGTAGTTGGGTACAAAAGA 58.057 37.500 0.00 0.00 44.15 2.52
265 292 9.750783 ATATCCGTACTAGTATCCATTGTAGTT 57.249 33.333 5.75 0.00 0.00 2.24
313 345 7.335422 ACTGTTGACTTCCTTCATATGTCAATC 59.665 37.037 9.53 5.44 45.33 2.67
454 487 7.883229 AAAAGAAAACCCAAAATACGCATAG 57.117 32.000 0.00 0.00 0.00 2.23
492 525 3.093814 TCCTGCATCCGAACTAAGTACA 58.906 45.455 0.00 0.00 0.00 2.90
532 565 8.185003 ACACTTTTAATTGACAAAAGCACTTC 57.815 30.769 10.50 0.00 43.62 3.01
642 675 4.271049 CAGAAGAGAAACTGCGACTTTCAA 59.729 41.667 0.00 0.00 31.12 2.69
698 731 7.724061 GGAGCCAAATTATCCAGAATAAACCTA 59.276 37.037 0.00 0.00 33.59 3.08
752 1394 2.175202 CAACAGAGACAGTAGGCTCCT 58.825 52.381 0.00 0.00 0.00 3.69
784 1426 5.292834 CAGACACTGCAACCTACATAAGATG 59.707 44.000 0.00 0.00 0.00 2.90
873 1515 7.816640 TGCTACATGTTCCATTTAGAAGTTTC 58.183 34.615 2.30 0.00 0.00 2.78
939 1581 0.324285 CAAGAGACTCTGCTGCCCTT 59.676 55.000 5.55 0.00 0.00 3.95
1369 2101 4.530094 TTGAGCTCTTTTACACAACACG 57.470 40.909 16.19 0.00 0.00 4.49
1430 2163 3.877559 TGACTGGTCTAGGCAATGATTG 58.122 45.455 0.00 0.00 42.98 2.67
1438 2171 4.207891 TCAATTCTTGACTGGTCTAGGC 57.792 45.455 11.03 0.00 34.08 3.93
1597 2496 2.769663 TGGTCCTTACGCCATGTTAGAT 59.230 45.455 0.00 0.00 28.50 1.98
1789 2688 0.482446 TGATGCCCACCTGAAAAGGT 59.518 50.000 0.00 0.00 44.23 3.50
1861 2770 3.423645 GCTTGTAGCATCAGTGACGAAAC 60.424 47.826 0.00 0.00 41.89 2.78
1863 2772 2.337583 GCTTGTAGCATCAGTGACGAA 58.662 47.619 0.00 0.00 41.89 3.85
1880 3154 0.106719 CCCGGTTGGACCATATGCTT 60.107 55.000 0.00 0.00 38.47 3.91
1916 3193 2.040544 CCAAAGCCGTGCGGAAGAT 61.041 57.895 15.45 0.00 37.50 2.40
1931 3208 5.964477 AGAGGGAGTACATAATTCAGACCAA 59.036 40.000 0.00 0.00 0.00 3.67
1933 3210 5.364157 ACAGAGGGAGTACATAATTCAGACC 59.636 44.000 0.00 0.00 0.00 3.85
1935 3212 5.598830 GGACAGAGGGAGTACATAATTCAGA 59.401 44.000 0.00 0.00 0.00 3.27
1937 3214 4.654262 GGGACAGAGGGAGTACATAATTCA 59.346 45.833 0.00 0.00 0.00 2.57
1938 3215 4.654262 TGGGACAGAGGGAGTACATAATTC 59.346 45.833 0.00 0.00 0.00 2.17
1939 3216 4.631234 TGGGACAGAGGGAGTACATAATT 58.369 43.478 0.00 0.00 0.00 1.40
1940 3217 4.280789 TGGGACAGAGGGAGTACATAAT 57.719 45.455 0.00 0.00 0.00 1.28
1941 3218 3.769189 TGGGACAGAGGGAGTACATAA 57.231 47.619 0.00 0.00 0.00 1.90
1942 3219 3.769189 TTGGGACAGAGGGAGTACATA 57.231 47.619 0.00 0.00 42.39 2.29
1943 3220 2.642171 TTGGGACAGAGGGAGTACAT 57.358 50.000 0.00 0.00 42.39 2.29
1947 3506 1.650528 CTCTTTGGGACAGAGGGAGT 58.349 55.000 0.00 0.00 44.75 3.85
1949 3508 0.178891 AGCTCTTTGGGACAGAGGGA 60.179 55.000 0.00 0.00 44.75 4.20
1957 3516 5.880901 ACAAATCTAAGAAGCTCTTTGGGA 58.119 37.500 4.15 2.74 37.89 4.37
1959 3518 7.604164 TGTAGACAAATCTAAGAAGCTCTTTGG 59.396 37.037 4.15 0.00 39.20 3.28
1964 3523 7.978975 ACATCTGTAGACAAATCTAAGAAGCTC 59.021 37.037 0.00 0.00 39.20 4.09
1965 3524 7.846066 ACATCTGTAGACAAATCTAAGAAGCT 58.154 34.615 0.00 0.00 39.20 3.74
1966 3525 9.026074 GTACATCTGTAGACAAATCTAAGAAGC 57.974 37.037 0.00 0.00 39.20 3.86
1969 3528 8.904834 GGAGTACATCTGTAGACAAATCTAAGA 58.095 37.037 0.00 0.00 39.20 2.10
1970 3529 8.138712 GGGAGTACATCTGTAGACAAATCTAAG 58.861 40.741 0.00 0.00 39.20 2.18
1971 3530 7.839705 AGGGAGTACATCTGTAGACAAATCTAA 59.160 37.037 0.00 0.00 39.20 2.10
1972 3531 7.355101 AGGGAGTACATCTGTAGACAAATCTA 58.645 38.462 0.00 0.00 36.29 1.98
1973 3532 6.198639 AGGGAGTACATCTGTAGACAAATCT 58.801 40.000 0.00 0.00 39.15 2.40
1974 3533 6.461788 GGAGGGAGTACATCTGTAGACAAATC 60.462 46.154 0.00 0.00 0.00 2.17
1975 3534 5.364157 GGAGGGAGTACATCTGTAGACAAAT 59.636 44.000 0.00 0.00 0.00 2.32
1976 3535 4.710375 GGAGGGAGTACATCTGTAGACAAA 59.290 45.833 0.00 0.00 0.00 2.83
1977 3536 4.279145 GGAGGGAGTACATCTGTAGACAA 58.721 47.826 0.00 0.00 0.00 3.18
1978 3537 3.684697 CGGAGGGAGTACATCTGTAGACA 60.685 52.174 0.00 0.00 0.00 3.41
1979 3538 2.879646 CGGAGGGAGTACATCTGTAGAC 59.120 54.545 0.00 0.00 0.00 2.59
1980 3539 2.508716 ACGGAGGGAGTACATCTGTAGA 59.491 50.000 0.00 0.00 30.83 2.59
1981 3540 2.933573 ACGGAGGGAGTACATCTGTAG 58.066 52.381 0.00 0.00 30.83 2.74
1982 3541 3.285484 GAACGGAGGGAGTACATCTGTA 58.715 50.000 0.98 0.00 32.32 2.74
1983 3542 2.100989 GAACGGAGGGAGTACATCTGT 58.899 52.381 0.00 0.00 34.02 3.41
1984 3543 1.409427 GGAACGGAGGGAGTACATCTG 59.591 57.143 0.00 0.00 0.00 2.90
1985 3544 1.777941 GGAACGGAGGGAGTACATCT 58.222 55.000 0.00 0.00 0.00 2.90
2033 3592 8.654997 ACTCATTTTAGTGCTAGATACATCCAT 58.345 33.333 0.00 0.00 0.00 3.41
2034 3593 8.023021 ACTCATTTTAGTGCTAGATACATCCA 57.977 34.615 0.00 0.00 0.00 3.41
2035 3594 8.364142 AGACTCATTTTAGTGCTAGATACATCC 58.636 37.037 0.00 0.00 0.00 3.51
2038 3597 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
2041 3600 8.087750 GCATCTAGACTCATTTTAGTGCTAGAT 58.912 37.037 0.00 0.00 41.43 1.98
2042 3601 7.068716 TGCATCTAGACTCATTTTAGTGCTAGA 59.931 37.037 0.00 0.00 38.76 2.43
2043 3602 7.205992 TGCATCTAGACTCATTTTAGTGCTAG 58.794 38.462 0.00 0.00 33.34 3.42
2044 3603 7.112452 TGCATCTAGACTCATTTTAGTGCTA 57.888 36.000 0.00 0.00 0.00 3.49
2045 3604 5.982356 TGCATCTAGACTCATTTTAGTGCT 58.018 37.500 0.00 0.00 0.00 4.40
2046 3605 6.073331 GGATGCATCTAGACTCATTTTAGTGC 60.073 42.308 25.28 5.59 0.00 4.40
2047 3606 6.145209 CGGATGCATCTAGACTCATTTTAGTG 59.855 42.308 25.28 0.00 0.00 2.74
2048 3607 6.183360 ACGGATGCATCTAGACTCATTTTAGT 60.183 38.462 25.28 0.00 0.00 2.24
2049 3608 6.219473 ACGGATGCATCTAGACTCATTTTAG 58.781 40.000 25.28 0.00 0.00 1.85
2050 3609 6.161855 ACGGATGCATCTAGACTCATTTTA 57.838 37.500 25.28 0.00 0.00 1.52
2051 3610 5.028549 ACGGATGCATCTAGACTCATTTT 57.971 39.130 25.28 0.48 0.00 1.82
2052 3611 4.679373 ACGGATGCATCTAGACTCATTT 57.321 40.909 25.28 1.13 0.00 2.32
2053 3612 5.714333 AGATACGGATGCATCTAGACTCATT 59.286 40.000 25.28 6.58 29.66 2.57
2054 3613 5.260424 AGATACGGATGCATCTAGACTCAT 58.740 41.667 25.28 9.73 29.66 2.90
2055 3614 4.657013 AGATACGGATGCATCTAGACTCA 58.343 43.478 25.28 5.56 29.66 3.41
2060 3619 6.502136 TTGTCTAGATACGGATGCATCTAG 57.498 41.667 25.28 20.66 46.48 2.43
2061 3620 6.894339 TTTGTCTAGATACGGATGCATCTA 57.106 37.500 25.28 12.00 33.58 1.98
2062 3621 5.791336 TTTGTCTAGATACGGATGCATCT 57.209 39.130 25.28 10.06 35.67 2.90
2063 3622 5.578727 GGATTTGTCTAGATACGGATGCATC 59.421 44.000 18.81 18.81 0.00 3.91
2064 3623 5.012046 TGGATTTGTCTAGATACGGATGCAT 59.988 40.000 0.00 0.00 0.00 3.96
2065 3624 4.343814 TGGATTTGTCTAGATACGGATGCA 59.656 41.667 0.00 0.00 0.00 3.96
2066 3625 4.883083 TGGATTTGTCTAGATACGGATGC 58.117 43.478 0.00 0.00 0.00 3.91
2067 3626 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
2068 3627 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
2069 3628 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
2070 3629 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
2071 3630 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2072 3631 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2074 3633 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2075 3634 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2076 3635 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
2077 3636 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
2078 3637 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
2079 3638 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
2080 3639 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
2081 3640 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
2082 3641 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
2084 3643 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
2089 3648 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2096 3655 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2097 3656 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2098 3657 1.687123 CATACTCCCTCCGTTCCGAAT 59.313 52.381 0.00 0.00 0.00 3.34
2101 3660 1.607628 CTACATACTCCCTCCGTTCCG 59.392 57.143 0.00 0.00 0.00 4.30
2104 3663 1.063114 AGCCTACATACTCCCTCCGTT 60.063 52.381 0.00 0.00 0.00 4.44
2107 3666 3.492829 CGAAAAGCCTACATACTCCCTCC 60.493 52.174 0.00 0.00 0.00 4.30
2108 3667 3.492829 CCGAAAAGCCTACATACTCCCTC 60.493 52.174 0.00 0.00 0.00 4.30
2109 3668 2.434702 CCGAAAAGCCTACATACTCCCT 59.565 50.000 0.00 0.00 0.00 4.20
2110 3669 2.484947 CCCGAAAAGCCTACATACTCCC 60.485 54.545 0.00 0.00 0.00 4.30
2111 3670 2.433239 TCCCGAAAAGCCTACATACTCC 59.567 50.000 0.00 0.00 0.00 3.85
2112 3671 3.118884 TGTCCCGAAAAGCCTACATACTC 60.119 47.826 0.00 0.00 0.00 2.59
2113 3672 2.835764 TGTCCCGAAAAGCCTACATACT 59.164 45.455 0.00 0.00 0.00 2.12
2114 3673 3.118884 TCTGTCCCGAAAAGCCTACATAC 60.119 47.826 0.00 0.00 0.00 2.39
2115 3674 3.101437 TCTGTCCCGAAAAGCCTACATA 58.899 45.455 0.00 0.00 0.00 2.29
2116 3675 1.906574 TCTGTCCCGAAAAGCCTACAT 59.093 47.619 0.00 0.00 0.00 2.29
2117 3676 1.275291 CTCTGTCCCGAAAAGCCTACA 59.725 52.381 0.00 0.00 0.00 2.74
2118 3677 1.405661 CCTCTGTCCCGAAAAGCCTAC 60.406 57.143 0.00 0.00 0.00 3.18
2119 3678 0.902531 CCTCTGTCCCGAAAAGCCTA 59.097 55.000 0.00 0.00 0.00 3.93
2120 3679 1.128188 ACCTCTGTCCCGAAAAGCCT 61.128 55.000 0.00 0.00 0.00 4.58
2121 3680 0.611714 TACCTCTGTCCCGAAAAGCC 59.388 55.000 0.00 0.00 0.00 4.35
2122 3681 2.467566 TTACCTCTGTCCCGAAAAGC 57.532 50.000 0.00 0.00 0.00 3.51
2123 3682 8.202137 TCTAAATATTACCTCTGTCCCGAAAAG 58.798 37.037 0.00 0.00 0.00 2.27
2124 3683 8.081517 TCTAAATATTACCTCTGTCCCGAAAA 57.918 34.615 0.00 0.00 0.00 2.29
2125 3684 7.562454 TCTCTAAATATTACCTCTGTCCCGAAA 59.438 37.037 0.00 0.00 0.00 3.46
2126 3685 7.064866 TCTCTAAATATTACCTCTGTCCCGAA 58.935 38.462 0.00 0.00 0.00 4.30
2127 3686 6.607970 TCTCTAAATATTACCTCTGTCCCGA 58.392 40.000 0.00 0.00 0.00 5.14
2128 3687 6.896021 TCTCTAAATATTACCTCTGTCCCG 57.104 41.667 0.00 0.00 0.00 5.14
2129 3688 8.145122 CAGTTCTCTAAATATTACCTCTGTCCC 58.855 40.741 0.00 0.00 0.00 4.46
2130 3689 8.915036 TCAGTTCTCTAAATATTACCTCTGTCC 58.085 37.037 0.00 0.00 0.00 4.02
2195 3770 6.050432 TGCAAGATTTCAAGCACAAAAATCT 58.950 32.000 9.32 9.32 46.46 2.40
2231 3807 5.163353 CCCCTACCAACACTCAAACAAAAAT 60.163 40.000 0.00 0.00 0.00 1.82
2441 4019 2.819477 CCTCGGAAGGAGAGCTGAT 58.181 57.895 0.00 0.00 46.67 2.90
2499 4078 1.614317 CGGAAGGCACCAGGATTCTTT 60.614 52.381 0.00 0.00 0.00 2.52
2536 4116 2.467838 GCCCTAATTACCGAAGACGAC 58.532 52.381 0.00 0.00 42.66 4.34
2544 4124 3.086282 AGTTTTGTGGCCCTAATTACCG 58.914 45.455 0.00 0.00 0.00 4.02
2548 4128 2.608623 AGCAGTTTTGTGGCCCTAATT 58.391 42.857 0.00 0.00 0.00 1.40
2563 4143 1.679898 GTGGGCCTGAGTTAGCAGT 59.320 57.895 4.53 0.00 34.06 4.40
2584 4164 3.810743 GCTTATTGGGCCTGGATTACGAT 60.811 47.826 4.53 0.00 0.00 3.73
2585 4165 2.486548 GCTTATTGGGCCTGGATTACGA 60.487 50.000 4.53 0.00 0.00 3.43
2586 4166 1.880027 GCTTATTGGGCCTGGATTACG 59.120 52.381 4.53 0.00 0.00 3.18
2615 4208 1.652329 CCGACCGACGCACGTATAC 60.652 63.158 0.00 0.00 41.07 1.47
2616 4209 2.106074 ACCGACCGACGCACGTATA 61.106 57.895 0.00 0.00 41.07 1.47
2661 4254 1.885560 TGGAACGCAATCGAAGGAAA 58.114 45.000 0.00 0.00 39.41 3.13
2664 4257 0.871722 TGTTGGAACGCAATCGAAGG 59.128 50.000 0.00 0.00 39.41 3.46
2685 4278 1.379527 CCGTGTTTTATGGAGGGCTC 58.620 55.000 0.00 0.00 37.69 4.70
2686 4279 0.679960 GCCGTGTTTTATGGAGGGCT 60.680 55.000 0.00 0.00 37.69 5.19
2687 4280 1.807226 GCCGTGTTTTATGGAGGGC 59.193 57.895 0.00 0.00 37.69 5.19
2688 4281 0.675522 ACGCCGTGTTTTATGGAGGG 60.676 55.000 0.00 0.00 39.36 4.30
2689 4282 0.446222 CACGCCGTGTTTTATGGAGG 59.554 55.000 9.53 0.00 39.36 4.30
2690 4283 0.179200 GCACGCCGTGTTTTATGGAG 60.179 55.000 19.57 0.00 40.71 3.86
2691 4284 0.885150 TGCACGCCGTGTTTTATGGA 60.885 50.000 19.57 0.00 37.69 3.41
2692 4285 0.727793 GTGCACGCCGTGTTTTATGG 60.728 55.000 19.57 0.00 35.75 2.74
2693 4286 0.040870 TGTGCACGCCGTGTTTTATG 60.041 50.000 19.57 0.00 35.75 1.90
2694 4287 0.663688 TTGTGCACGCCGTGTTTTAT 59.336 45.000 19.57 0.00 35.75 1.40
2695 4288 0.450583 TTTGTGCACGCCGTGTTTTA 59.549 45.000 19.57 0.33 35.75 1.52
2696 4289 0.388649 TTTTGTGCACGCCGTGTTTT 60.389 45.000 19.57 0.00 35.75 2.43
2697 4290 1.073768 GTTTTGTGCACGCCGTGTTT 61.074 50.000 19.57 0.00 35.75 2.83
2698 4291 1.515304 GTTTTGTGCACGCCGTGTT 60.515 52.632 19.57 0.00 35.75 3.32
2699 4292 2.101380 GTTTTGTGCACGCCGTGT 59.899 55.556 19.57 0.00 35.75 4.49
2700 4293 1.470699 CTTGTTTTGTGCACGCCGTG 61.471 55.000 13.95 13.95 36.51 4.94
2701 4294 1.226547 CTTGTTTTGTGCACGCCGT 60.227 52.632 13.13 0.00 0.00 5.68
2702 4295 0.929824 CTCTTGTTTTGTGCACGCCG 60.930 55.000 13.13 0.00 0.00 6.46
2703 4296 1.208642 GCTCTTGTTTTGTGCACGCC 61.209 55.000 13.13 0.00 0.00 5.68
2704 4297 1.531522 CGCTCTTGTTTTGTGCACGC 61.532 55.000 13.13 4.92 0.00 5.34
2705 4298 0.929824 CCGCTCTTGTTTTGTGCACG 60.930 55.000 13.13 0.00 0.00 5.34
2706 4299 1.208642 GCCGCTCTTGTTTTGTGCAC 61.209 55.000 10.75 10.75 0.00 4.57
2707 4300 1.065600 GCCGCTCTTGTTTTGTGCA 59.934 52.632 0.00 0.00 0.00 4.57
2708 4301 2.010817 CGCCGCTCTTGTTTTGTGC 61.011 57.895 0.00 0.00 0.00 4.57
2709 4302 1.370414 CCGCCGCTCTTGTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
2710 4303 3.030652 CCGCCGCTCTTGTTTTGT 58.969 55.556 0.00 0.00 0.00 2.83
2711 4304 2.429069 GCCGCCGCTCTTGTTTTG 60.429 61.111 0.00 0.00 0.00 2.44
2712 4305 4.025401 CGCCGCCGCTCTTGTTTT 62.025 61.111 0.00 0.00 0.00 2.43
2713 4306 4.980805 TCGCCGCCGCTCTTGTTT 62.981 61.111 0.00 0.00 0.00 2.83
2735 4328 2.202892 GGGCAAGGTCGATCGGTC 60.203 66.667 16.41 8.87 0.00 4.79
2736 4329 4.143333 CGGGCAAGGTCGATCGGT 62.143 66.667 16.41 0.00 0.00 4.69
2737 4330 4.143333 ACGGGCAAGGTCGATCGG 62.143 66.667 16.41 0.00 0.00 4.18
2738 4331 2.885644 CACGGGCAAGGTCGATCG 60.886 66.667 9.36 9.36 0.00 3.69
2739 4332 2.511600 CCACGGGCAAGGTCGATC 60.512 66.667 0.00 0.00 0.00 3.69
2740 4333 3.319198 ACCACGGGCAAGGTCGAT 61.319 61.111 0.00 0.00 30.79 3.59
2741 4334 4.308458 CACCACGGGCAAGGTCGA 62.308 66.667 0.00 0.00 35.52 4.20
2742 4335 4.308458 TCACCACGGGCAAGGTCG 62.308 66.667 0.00 0.00 35.52 4.79
2743 4336 2.668550 GTCACCACGGGCAAGGTC 60.669 66.667 0.00 0.00 35.52 3.85
2744 4337 3.168528 AGTCACCACGGGCAAGGT 61.169 61.111 0.00 0.00 39.10 3.50
2745 4338 2.358737 GAGTCACCACGGGCAAGG 60.359 66.667 0.00 0.00 0.00 3.61
2746 4339 0.951040 GAAGAGTCACCACGGGCAAG 60.951 60.000 0.00 0.00 0.00 4.01
2747 4340 1.070786 GAAGAGTCACCACGGGCAA 59.929 57.895 0.00 0.00 0.00 4.52
2748 4341 2.741092 GAAGAGTCACCACGGGCA 59.259 61.111 0.00 0.00 0.00 5.36
2749 4342 2.432628 CGAAGAGTCACCACGGGC 60.433 66.667 0.00 0.00 0.00 6.13
2750 4343 1.592400 TAGCGAAGAGTCACCACGGG 61.592 60.000 0.00 0.00 0.00 5.28
2751 4344 0.179161 CTAGCGAAGAGTCACCACGG 60.179 60.000 0.00 0.00 0.00 4.94
2752 4345 0.803117 TCTAGCGAAGAGTCACCACG 59.197 55.000 0.00 0.00 0.00 4.94
2753 4346 2.553079 CTCTAGCGAAGAGTCACCAC 57.447 55.000 10.12 0.00 45.85 4.16
2766 4359 1.857318 TAGCCGCGATCAGCTCTAGC 61.857 60.000 8.23 0.00 45.59 3.42
2767 4360 0.109964 GTAGCCGCGATCAGCTCTAG 60.110 60.000 8.23 0.00 45.59 2.43
2768 4361 1.842698 CGTAGCCGCGATCAGCTCTA 61.843 60.000 8.23 5.22 45.59 2.43
2769 4362 2.725008 GTAGCCGCGATCAGCTCT 59.275 61.111 8.23 6.00 45.59 4.09
2770 4363 2.663630 TTCGTAGCCGCGATCAGCTC 62.664 60.000 8.23 1.26 45.59 4.09
2771 4364 2.669808 CTTCGTAGCCGCGATCAGCT 62.670 60.000 8.23 10.71 45.59 4.24
2772 4365 2.278596 TTCGTAGCCGCGATCAGC 60.279 61.111 8.23 1.15 40.76 4.26
2773 4366 0.248498 TTCTTCGTAGCCGCGATCAG 60.248 55.000 8.23 0.00 40.76 2.90
2774 4367 0.171679 TTTCTTCGTAGCCGCGATCA 59.828 50.000 8.23 0.00 40.76 2.92
2775 4368 0.571197 GTTTCTTCGTAGCCGCGATC 59.429 55.000 8.23 0.00 40.76 3.69
2776 4369 0.804933 GGTTTCTTCGTAGCCGCGAT 60.805 55.000 8.23 0.00 40.76 4.58
2777 4370 1.444895 GGTTTCTTCGTAGCCGCGA 60.445 57.895 8.23 0.00 39.28 5.87
2778 4371 2.450345 GGGTTTCTTCGTAGCCGCG 61.450 63.158 0.00 0.00 0.00 6.46
2779 4372 0.952010 TTGGGTTTCTTCGTAGCCGC 60.952 55.000 0.00 0.00 34.67 6.53
2780 4373 1.076332 CTTGGGTTTCTTCGTAGCCG 58.924 55.000 0.00 0.00 34.67 5.52
2781 4374 1.450025 CCTTGGGTTTCTTCGTAGCC 58.550 55.000 0.00 0.00 0.00 3.93
2782 4375 0.803117 GCCTTGGGTTTCTTCGTAGC 59.197 55.000 0.00 0.00 0.00 3.58
2783 4376 1.076332 CGCCTTGGGTTTCTTCGTAG 58.924 55.000 0.00 0.00 0.00 3.51
2784 4377 0.680618 TCGCCTTGGGTTTCTTCGTA 59.319 50.000 0.00 0.00 0.00 3.43
2785 4378 0.602905 CTCGCCTTGGGTTTCTTCGT 60.603 55.000 0.00 0.00 0.00 3.85
2786 4379 1.298859 CCTCGCCTTGGGTTTCTTCG 61.299 60.000 0.00 0.00 0.00 3.79
2787 4380 1.587043 GCCTCGCCTTGGGTTTCTTC 61.587 60.000 0.00 0.00 0.00 2.87
2788 4381 1.603739 GCCTCGCCTTGGGTTTCTT 60.604 57.895 0.00 0.00 0.00 2.52
2789 4382 2.034221 GCCTCGCCTTGGGTTTCT 59.966 61.111 0.00 0.00 0.00 2.52
2790 4383 3.431725 CGCCTCGCCTTGGGTTTC 61.432 66.667 0.00 0.00 0.00 2.78
2791 4384 4.265056 ACGCCTCGCCTTGGGTTT 62.265 61.111 0.00 0.00 0.00 3.27
2792 4385 4.699522 GACGCCTCGCCTTGGGTT 62.700 66.667 0.00 0.00 0.00 4.11
2794 4387 4.697756 TTGACGCCTCGCCTTGGG 62.698 66.667 0.00 0.00 0.00 4.12
2795 4388 2.668212 TTTGACGCCTCGCCTTGG 60.668 61.111 0.00 0.00 0.00 3.61
2796 4389 1.667830 TCTTTGACGCCTCGCCTTG 60.668 57.895 0.00 0.00 0.00 3.61
2797 4390 1.668151 GTCTTTGACGCCTCGCCTT 60.668 57.895 0.00 0.00 0.00 4.35
2798 4391 2.048127 GTCTTTGACGCCTCGCCT 60.048 61.111 0.00 0.00 0.00 5.52
2799 4392 3.119096 GGTCTTTGACGCCTCGCC 61.119 66.667 0.00 0.00 32.65 5.54
2800 4393 2.357034 TGGTCTTTGACGCCTCGC 60.357 61.111 0.00 0.00 32.65 5.03
2801 4394 2.383527 GCTGGTCTTTGACGCCTCG 61.384 63.158 0.00 0.00 32.65 4.63
2802 4395 2.035442 GGCTGGTCTTTGACGCCTC 61.035 63.158 8.62 0.00 36.57 4.70
2803 4396 2.032681 GGCTGGTCTTTGACGCCT 59.967 61.111 8.62 0.00 36.57 5.52
2804 4397 1.675641 ATGGCTGGTCTTTGACGCC 60.676 57.895 8.86 8.86 38.77 5.68
2805 4398 1.503542 CATGGCTGGTCTTTGACGC 59.496 57.895 0.00 0.00 32.65 5.19
2806 4399 2.174334 CCATGGCTGGTCTTTGACG 58.826 57.895 0.00 0.00 37.79 4.35
2816 4409 1.337728 TGTCAGTCGTTACCATGGCTG 60.338 52.381 13.04 10.06 42.31 4.85
2817 4410 0.973632 TGTCAGTCGTTACCATGGCT 59.026 50.000 13.04 1.45 0.00 4.75
2818 4411 1.665679 CATGTCAGTCGTTACCATGGC 59.334 52.381 13.04 0.00 31.49 4.40
2819 4412 3.190079 CTCATGTCAGTCGTTACCATGG 58.810 50.000 11.19 11.19 34.94 3.66
2820 4413 3.119137 TCCTCATGTCAGTCGTTACCATG 60.119 47.826 0.00 0.00 35.39 3.66
2821 4414 3.096852 TCCTCATGTCAGTCGTTACCAT 58.903 45.455 0.00 0.00 0.00 3.55
2822 4415 2.521126 TCCTCATGTCAGTCGTTACCA 58.479 47.619 0.00 0.00 0.00 3.25
2823 4416 3.448686 CATCCTCATGTCAGTCGTTACC 58.551 50.000 0.00 0.00 0.00 2.85
2824 4417 3.448686 CCATCCTCATGTCAGTCGTTAC 58.551 50.000 0.00 0.00 0.00 2.50
2825 4418 2.159099 GCCATCCTCATGTCAGTCGTTA 60.159 50.000 0.00 0.00 0.00 3.18
2826 4419 1.406069 GCCATCCTCATGTCAGTCGTT 60.406 52.381 0.00 0.00 0.00 3.85
2827 4420 0.176680 GCCATCCTCATGTCAGTCGT 59.823 55.000 0.00 0.00 0.00 4.34
2828 4421 0.463204 AGCCATCCTCATGTCAGTCG 59.537 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.