Multiple sequence alignment - TraesCS7B01G088200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G088200 chr7B 100.000 2213 0 0 928 3140 103573061 103570849 0.000000e+00 4087
1 TraesCS7B01G088200 chr7B 100.000 611 0 0 1 611 103573988 103573378 0.000000e+00 1129
2 TraesCS7B01G088200 chr7D 93.175 1890 100 14 930 2811 138193975 138192107 0.000000e+00 2748
3 TraesCS7B01G088200 chr7A 95.565 1601 60 4 930 2520 138164149 138162550 0.000000e+00 2553
4 TraesCS7B01G088200 chr7A 96.259 294 10 1 2519 2811 138162445 138162152 6.090000e-132 481
5 TraesCS7B01G088200 chr7A 95.580 181 8 0 2960 3140 138162155 138161975 1.100000e-74 291
6 TraesCS7B01G088200 chr4B 96.147 597 23 0 2 598 34789245 34789841 0.000000e+00 976
7 TraesCS7B01G088200 chr2D 95.326 599 27 1 1 598 53473570 53472972 0.000000e+00 950
8 TraesCS7B01G088200 chrUn 91.166 566 30 4 33 598 296999629 297000174 0.000000e+00 750
9 TraesCS7B01G088200 chr5B 89.542 153 12 4 2809 2960 266358650 266358799 1.150000e-44 191
10 TraesCS7B01G088200 chr5B 89.542 153 12 4 2809 2960 266361209 266361358 1.150000e-44 191
11 TraesCS7B01G088200 chr6B 90.278 144 13 1 2818 2960 177272170 177272027 1.490000e-43 187
12 TraesCS7B01G088200 chr5A 88.235 153 15 1 2808 2960 427828437 427828586 2.490000e-41 180
13 TraesCS7B01G088200 chr4D 87.179 156 18 2 2807 2960 127159152 127158997 3.220000e-40 176
14 TraesCS7B01G088200 chr2B 85.542 166 15 7 2806 2962 109974312 109974477 6.970000e-37 165
15 TraesCS7B01G088200 chr2B 85.256 156 19 3 2809 2964 509573222 509573373 1.170000e-34 158
16 TraesCS7B01G088200 chr2A 85.535 159 18 3 2809 2962 695187259 695187417 9.010000e-36 161
17 TraesCS7B01G088200 chr3B 85.000 160 19 5 2806 2962 157762778 157762935 1.170000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G088200 chr7B 103570849 103573988 3139 True 2608.000000 4087 100.000000 1 3140 2 chr7B.!!$R1 3139
1 TraesCS7B01G088200 chr7D 138192107 138193975 1868 True 2748.000000 2748 93.175000 930 2811 1 chr7D.!!$R1 1881
2 TraesCS7B01G088200 chr7A 138161975 138164149 2174 True 1108.333333 2553 95.801333 930 3140 3 chr7A.!!$R1 2210
3 TraesCS7B01G088200 chr4B 34789245 34789841 596 False 976.000000 976 96.147000 2 598 1 chr4B.!!$F1 596
4 TraesCS7B01G088200 chr2D 53472972 53473570 598 True 950.000000 950 95.326000 1 598 1 chr2D.!!$R1 597
5 TraesCS7B01G088200 chrUn 296999629 297000174 545 False 750.000000 750 91.166000 33 598 1 chrUn.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 612 0.254747 TATCCAAAGTTCAGGGCCCG 59.745 55.0 18.44 12.05 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2188 2196 0.586319 AACACGACAATCCAGCAACG 59.414 50.0 0.0 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 178 4.373116 GCGAAGAGGTGGCCGACA 62.373 66.667 0.00 0.00 0.00 4.35
234 236 2.659063 CGGGCTGTGGACCATCAGA 61.659 63.158 21.30 0.00 41.90 3.27
458 460 2.741211 GGTGTCGGCCGGAAGTTC 60.741 66.667 27.83 9.97 0.00 3.01
599 601 9.590451 AATATGTGCTTTCATGTTTATCCAAAG 57.410 29.630 0.00 0.00 0.00 2.77
600 602 6.403866 TGTGCTTTCATGTTTATCCAAAGT 57.596 33.333 0.00 0.00 0.00 2.66
601 603 6.815089 TGTGCTTTCATGTTTATCCAAAGTT 58.185 32.000 0.00 0.00 0.00 2.66
602 604 6.922957 TGTGCTTTCATGTTTATCCAAAGTTC 59.077 34.615 0.00 0.00 0.00 3.01
603 605 6.922957 GTGCTTTCATGTTTATCCAAAGTTCA 59.077 34.615 0.00 0.00 0.00 3.18
604 606 7.115378 GTGCTTTCATGTTTATCCAAAGTTCAG 59.885 37.037 0.00 0.00 0.00 3.02
605 607 6.587608 GCTTTCATGTTTATCCAAAGTTCAGG 59.412 38.462 0.00 0.00 0.00 3.86
606 608 6.588719 TTCATGTTTATCCAAAGTTCAGGG 57.411 37.500 0.00 0.00 0.00 4.45
607 609 4.462483 TCATGTTTATCCAAAGTTCAGGGC 59.538 41.667 0.00 0.00 0.00 5.19
608 610 3.161866 TGTTTATCCAAAGTTCAGGGCC 58.838 45.455 0.00 0.00 0.00 5.80
609 611 2.496070 GTTTATCCAAAGTTCAGGGCCC 59.504 50.000 16.46 16.46 0.00 5.80
610 612 0.254747 TATCCAAAGTTCAGGGCCCG 59.745 55.000 18.44 12.05 0.00 6.13
949 951 3.304458 GCAAAACCCTACAGCTACAACAC 60.304 47.826 0.00 0.00 0.00 3.32
950 952 2.853235 AACCCTACAGCTACAACACC 57.147 50.000 0.00 0.00 0.00 4.16
1014 1022 2.730733 GCGATGCTCCATCTCCGA 59.269 61.111 3.98 0.00 38.59 4.55
1043 1051 0.749049 CTCTCCGCATCTCATGTCCA 59.251 55.000 0.00 0.00 0.00 4.02
1059 1067 2.294078 CCACACACCCTCCCTCTCC 61.294 68.421 0.00 0.00 0.00 3.71
1131 1139 4.831307 CCGTTCGCCGTCGAGGAG 62.831 72.222 6.70 2.54 46.34 3.69
1145 1153 3.759865 AGGAGTACCTCGTCACCAA 57.240 52.632 0.00 0.00 44.13 3.67
1207 1215 2.203788 TCGCCCACCTCAAGTCCT 60.204 61.111 0.00 0.00 0.00 3.85
1214 1222 0.901124 CACCTCAAGTCCTCCTCCAG 59.099 60.000 0.00 0.00 0.00 3.86
1263 1271 3.610669 CTCGGCATCTCCCCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
1352 1360 4.813526 CGTCGACGAGCTCACGGG 62.814 72.222 33.35 15.04 43.02 5.28
1576 1584 1.065491 AGCAATGCGGGATAAGTGTCA 60.065 47.619 0.00 0.00 0.00 3.58
1751 1759 5.606329 AGAAAATTGACAGGAAAATGGGGAA 59.394 36.000 0.00 0.00 0.00 3.97
1810 1818 1.219124 GCTGTGAGGAAGATGCCGA 59.781 57.895 0.00 0.00 0.00 5.54
1846 1854 1.339055 CCGAGGAAAGGATGCAGACAA 60.339 52.381 0.00 0.00 0.00 3.18
1886 1894 1.541233 GGATGTTGGGCTGGAGATACG 60.541 57.143 0.00 0.00 0.00 3.06
1927 1935 6.393990 CCAGTTCTGGTCATGTATAGCTATC 58.606 44.000 10.16 2.99 0.00 2.08
1939 1947 2.511600 GCTATCAGCGCCGGTTGT 60.512 61.111 2.29 0.00 0.00 3.32
2013 2021 7.283625 TCCTGAGCTTGACTTCTATTCTATC 57.716 40.000 0.00 0.00 0.00 2.08
2188 2196 2.431683 TGCTTGGTCTGGGAGCAC 59.568 61.111 0.00 0.00 41.15 4.40
2265 2274 8.478877 ACCCATGTTTTGAATGTTAAACAGTTA 58.521 29.630 0.00 0.00 44.61 2.24
2621 2745 7.039504 TCAGAATTTGCTCCTTTTTGATTAGCT 60.040 33.333 0.00 0.00 34.28 3.32
2696 2820 1.215382 CCGCCGACTCTGATTCACA 59.785 57.895 0.00 0.00 0.00 3.58
2726 2850 3.980646 TTTGACTCGTGAACCCAATTG 57.019 42.857 0.00 0.00 0.00 2.32
2786 2910 7.443879 ACCCAATCATTTTGGTTTGACATAAAC 59.556 33.333 3.86 0.00 37.88 2.01
2812 2936 3.380320 GTGACCATACCAGCAAAATACCC 59.620 47.826 0.00 0.00 0.00 3.69
2813 2937 2.956333 GACCATACCAGCAAAATACCCC 59.044 50.000 0.00 0.00 0.00 4.95
2814 2938 2.316108 CCATACCAGCAAAATACCCCC 58.684 52.381 0.00 0.00 0.00 5.40
2815 2939 1.953686 CATACCAGCAAAATACCCCCG 59.046 52.381 0.00 0.00 0.00 5.73
2816 2940 0.993470 TACCAGCAAAATACCCCCGT 59.007 50.000 0.00 0.00 0.00 5.28
2817 2941 0.323087 ACCAGCAAAATACCCCCGTC 60.323 55.000 0.00 0.00 0.00 4.79
2818 2942 1.373590 CCAGCAAAATACCCCCGTCG 61.374 60.000 0.00 0.00 0.00 5.12
2819 2943 0.675522 CAGCAAAATACCCCCGTCGT 60.676 55.000 0.00 0.00 0.00 4.34
2820 2944 0.037160 AGCAAAATACCCCCGTCGTT 59.963 50.000 0.00 0.00 0.00 3.85
2821 2945 0.448990 GCAAAATACCCCCGTCGTTC 59.551 55.000 0.00 0.00 0.00 3.95
2822 2946 1.089112 CAAAATACCCCCGTCGTTCC 58.911 55.000 0.00 0.00 0.00 3.62
2823 2947 0.986527 AAAATACCCCCGTCGTTCCT 59.013 50.000 0.00 0.00 0.00 3.36
2824 2948 1.864669 AAATACCCCCGTCGTTCCTA 58.135 50.000 0.00 0.00 0.00 2.94
2825 2949 1.864669 AATACCCCCGTCGTTCCTAA 58.135 50.000 0.00 0.00 0.00 2.69
2826 2950 1.864669 ATACCCCCGTCGTTCCTAAA 58.135 50.000 0.00 0.00 0.00 1.85
2827 2951 1.864669 TACCCCCGTCGTTCCTAAAT 58.135 50.000 0.00 0.00 0.00 1.40
2828 2952 1.864669 ACCCCCGTCGTTCCTAAATA 58.135 50.000 0.00 0.00 0.00 1.40
2829 2953 2.401568 ACCCCCGTCGTTCCTAAATAT 58.598 47.619 0.00 0.00 0.00 1.28
2830 2954 3.575805 ACCCCCGTCGTTCCTAAATATA 58.424 45.455 0.00 0.00 0.00 0.86
2831 2955 3.966665 ACCCCCGTCGTTCCTAAATATAA 59.033 43.478 0.00 0.00 0.00 0.98
2832 2956 4.039609 ACCCCCGTCGTTCCTAAATATAAG 59.960 45.833 0.00 0.00 0.00 1.73
2833 2957 4.039609 CCCCCGTCGTTCCTAAATATAAGT 59.960 45.833 0.00 0.00 0.00 2.24
2834 2958 5.243730 CCCCCGTCGTTCCTAAATATAAGTA 59.756 44.000 0.00 0.00 0.00 2.24
2835 2959 6.071165 CCCCCGTCGTTCCTAAATATAAGTAT 60.071 42.308 0.00 0.00 0.00 2.12
2836 2960 7.381323 CCCCGTCGTTCCTAAATATAAGTATT 58.619 38.462 0.00 0.00 31.89 1.89
2837 2961 7.874528 CCCCGTCGTTCCTAAATATAAGTATTT 59.125 37.037 0.00 0.00 41.92 1.40
2838 2962 9.264719 CCCGTCGTTCCTAAATATAAGTATTTT 57.735 33.333 0.00 0.00 40.21 1.82
2900 3024 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
2901 3025 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
2902 3026 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
2903 3027 5.559770 TGTAGATTCACTCATTTTGCTCCA 58.440 37.500 0.00 0.00 0.00 3.86
2904 3028 6.182627 TGTAGATTCACTCATTTTGCTCCAT 58.817 36.000 0.00 0.00 0.00 3.41
2905 3029 7.337938 TGTAGATTCACTCATTTTGCTCCATA 58.662 34.615 0.00 0.00 0.00 2.74
2906 3030 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
2907 3031 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
2908 3032 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
2909 3033 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
2910 3034 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
2911 3035 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
2912 3036 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
2913 3037 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
2914 3038 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
2915 3039 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
2916 3040 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
2917 3041 8.385491 TCATTTTGCTCCATATGTAGTCCATAT 58.615 33.333 1.24 0.00 45.67 1.78
2918 3042 9.017509 CATTTTGCTCCATATGTAGTCCATATT 57.982 33.333 1.24 0.00 42.87 1.28
2920 3044 9.725019 TTTTGCTCCATATGTAGTCCATATTAG 57.275 33.333 1.24 0.00 42.87 1.73
2921 3045 8.664669 TTGCTCCATATGTAGTCCATATTAGA 57.335 34.615 1.24 0.00 42.87 2.10
2922 3046 8.664669 TGCTCCATATGTAGTCCATATTAGAA 57.335 34.615 1.24 0.00 42.87 2.10
2923 3047 9.271921 TGCTCCATATGTAGTCCATATTAGAAT 57.728 33.333 1.24 0.00 42.87 2.40
2924 3048 9.757227 GCTCCATATGTAGTCCATATTAGAATC 57.243 37.037 1.24 0.00 42.87 2.52
2926 3050 9.213777 TCCATATGTAGTCCATATTAGAATCCC 57.786 37.037 1.24 0.00 42.87 3.85
2927 3051 9.218525 CCATATGTAGTCCATATTAGAATCCCT 57.781 37.037 1.24 0.00 42.87 4.20
2954 3078 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2955 3079 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2956 3080 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2957 3081 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2958 3082 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2959 3083 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2960 3084 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2961 3085 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
2962 3086 7.715266 ATATTTAGGAACGGAGGGAGTATAC 57.285 40.000 0.00 0.00 0.00 1.47
2975 3099 7.039923 CGGAGGGAGTATACTAAGCTAAATTGA 60.040 40.741 5.09 0.00 0.00 2.57
3016 3140 5.298276 TGCTTAATGGAATAACGAATGGACC 59.702 40.000 0.00 0.00 0.00 4.46
3049 3173 2.014068 GCCCATGAGCTTAGGTGTCAC 61.014 57.143 0.00 0.00 0.00 3.67
3069 3193 9.651718 GTGTCACTGTTTAGTCTCAAAATTTAG 57.348 33.333 0.00 0.00 34.07 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 152 2.587194 CCTCTTCGCCATCGCCAG 60.587 66.667 0.00 0.00 35.26 4.85
196 198 1.344953 ATCCGCAGCATCCCAACCTA 61.345 55.000 0.00 0.00 0.00 3.08
227 229 5.393787 CCAACAAATCATCCACTTCTGATGG 60.394 44.000 0.00 0.00 40.02 3.51
234 236 2.513753 TCGCCAACAAATCATCCACTT 58.486 42.857 0.00 0.00 0.00 3.16
374 376 4.446371 CCATAGACTCCATGGAAGAACAC 58.554 47.826 17.00 3.92 44.95 3.32
927 929 2.882137 TGTTGTAGCTGTAGGGTTTTGC 59.118 45.455 0.00 0.00 0.00 3.68
928 930 3.252458 GGTGTTGTAGCTGTAGGGTTTTG 59.748 47.826 0.00 0.00 0.00 2.44
992 1000 3.696426 GATGGAGCATCGCGTCGC 61.696 66.667 7.29 7.29 34.37 5.19
993 1001 2.013483 GAGATGGAGCATCGCGTCG 61.013 63.158 5.77 0.00 44.67 5.12
1014 1022 0.908198 ATGCGGAGAGGAAGAGCTTT 59.092 50.000 0.00 0.00 0.00 3.51
1043 1051 2.122954 GGGAGAGGGAGGGTGTGT 59.877 66.667 0.00 0.00 0.00 3.72
1059 1067 1.223763 GTAGAGCGGGAAAAGGGGG 59.776 63.158 0.00 0.00 0.00 5.40
1104 1112 4.388499 GCGAACGGCTCTGGGGAA 62.388 66.667 0.00 0.00 39.11 3.97
1131 1139 1.007336 CGCAGTTGGTGACGAGGTAC 61.007 60.000 0.00 0.00 0.00 3.34
1297 1305 2.584418 CACATCGGCGCAGAGGAG 60.584 66.667 27.90 16.87 0.00 3.69
1340 1348 3.432588 CGAGACCCGTGAGCTCGT 61.433 66.667 9.64 0.00 44.59 4.18
1352 1360 4.443266 AGCGCTTGAGGCCGAGAC 62.443 66.667 2.64 0.00 37.74 3.36
1710 1718 1.004560 CTCCTGGCTCTGAAACGCA 60.005 57.895 0.00 0.00 0.00 5.24
1751 1759 2.365293 GACCAACCAAGCATTTCAAGGT 59.635 45.455 0.00 0.00 0.00 3.50
1846 1854 4.792068 TCCCTTGTCAAGAAATTCACAGT 58.208 39.130 14.42 0.00 0.00 3.55
2188 2196 0.586319 AACACGACAATCCAGCAACG 59.414 50.000 0.00 0.00 0.00 4.10
2265 2274 4.225042 TGTTACACAAGATCACCCATAGCT 59.775 41.667 0.00 0.00 0.00 3.32
2360 2370 3.068024 GCATGTTCACTGGAAAACTGGAA 59.932 43.478 0.00 0.00 34.13 3.53
2696 2820 7.392113 TGGGTTCACGAGTCAAATAATATGTTT 59.608 33.333 0.00 0.00 0.00 2.83
2726 2850 5.640732 ACATCCAAAATCACAAAGCGATAC 58.359 37.500 0.00 0.00 0.00 2.24
2786 2910 2.768253 TTGCTGGTATGGTCACTCTG 57.232 50.000 0.00 0.00 0.00 3.35
2812 2936 8.822652 AAATACTTATATTTAGGAACGACGGG 57.177 34.615 0.00 0.00 38.89 5.28
2840 2964 8.811017 CCATATGTAGTCCATATTCAACTCTCT 58.189 37.037 1.24 0.00 42.87 3.10
2841 2965 8.807118 TCCATATGTAGTCCATATTCAACTCTC 58.193 37.037 1.24 0.00 42.87 3.20
2842 2966 8.727100 TCCATATGTAGTCCATATTCAACTCT 57.273 34.615 1.24 0.00 42.87 3.24
2843 2967 9.376075 CATCCATATGTAGTCCATATTCAACTC 57.624 37.037 1.24 0.00 42.87 3.01
2844 2968 9.104713 TCATCCATATGTAGTCCATATTCAACT 57.895 33.333 1.24 0.00 42.87 3.16
2845 2969 9.725019 TTCATCCATATGTAGTCCATATTCAAC 57.275 33.333 1.24 0.00 42.87 3.18
2874 2998 9.624373 AGCAAAATGAGTGAATCTACATTCTAT 57.376 29.630 0.00 0.00 39.49 1.98
2875 2999 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
2876 3000 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
2877 3001 7.148188 TGGAGCAAAATGAGTGAATCTACATTC 60.148 37.037 0.00 0.00 39.24 2.67
2878 3002 6.660521 TGGAGCAAAATGAGTGAATCTACATT 59.339 34.615 0.00 0.00 34.99 2.71
2879 3003 6.182627 TGGAGCAAAATGAGTGAATCTACAT 58.817 36.000 0.00 0.00 0.00 2.29
2880 3004 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
2881 3005 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
2882 3006 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
2883 3007 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
2884 3008 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
2885 3009 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
2886 3010 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
2887 3011 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
2888 3012 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
2889 3013 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
2890 3014 6.057533 TGGACTACATATGGAGCAAAATGAG 58.942 40.000 15.30 0.00 0.00 2.90
2891 3015 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
2892 3016 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
2928 3052 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2929 3053 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2930 3054 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2931 3055 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2932 3056 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2933 3057 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2934 3058 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2935 3059 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2936 3060 9.247861 GTATACTCCCTCCGTTCCTAAATATAA 57.752 37.037 0.00 0.00 0.00 0.98
2937 3061 8.618385 AGTATACTCCCTCCGTTCCTAAATATA 58.382 37.037 0.00 0.00 0.00 0.86
2938 3062 7.477008 AGTATACTCCCTCCGTTCCTAAATAT 58.523 38.462 0.00 0.00 0.00 1.28
2939 3063 6.856757 AGTATACTCCCTCCGTTCCTAAATA 58.143 40.000 0.00 0.00 0.00 1.40
2940 3064 5.713807 AGTATACTCCCTCCGTTCCTAAAT 58.286 41.667 0.00 0.00 0.00 1.40
2941 3065 5.134725 AGTATACTCCCTCCGTTCCTAAA 57.865 43.478 0.00 0.00 0.00 1.85
2942 3066 4.803329 AGTATACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
2943 3067 5.747248 GCTTAGTATACTCCCTCCGTTCCTA 60.747 48.000 9.12 0.00 0.00 2.94
2944 3068 4.727677 CTTAGTATACTCCCTCCGTTCCT 58.272 47.826 9.12 0.00 0.00 3.36
2945 3069 3.255395 GCTTAGTATACTCCCTCCGTTCC 59.745 52.174 9.12 0.00 0.00 3.62
2946 3070 4.143543 AGCTTAGTATACTCCCTCCGTTC 58.856 47.826 9.12 0.00 0.00 3.95
2947 3071 4.181799 AGCTTAGTATACTCCCTCCGTT 57.818 45.455 9.12 0.00 0.00 4.44
2948 3072 3.880168 AGCTTAGTATACTCCCTCCGT 57.120 47.619 9.12 0.00 0.00 4.69
2949 3073 6.837471 ATTTAGCTTAGTATACTCCCTCCG 57.163 41.667 9.12 0.00 0.00 4.63
2950 3074 8.191534 TCAATTTAGCTTAGTATACTCCCTCC 57.808 38.462 9.12 0.00 0.00 4.30
2951 3075 9.646427 CATCAATTTAGCTTAGTATACTCCCTC 57.354 37.037 9.12 0.00 0.00 4.30
2952 3076 8.097662 GCATCAATTTAGCTTAGTATACTCCCT 58.902 37.037 9.12 6.85 0.00 4.20
2953 3077 8.097662 AGCATCAATTTAGCTTAGTATACTCCC 58.902 37.037 9.12 0.00 34.37 4.30
2954 3078 8.930760 CAGCATCAATTTAGCTTAGTATACTCC 58.069 37.037 9.12 0.00 36.26 3.85
2955 3079 8.930760 CCAGCATCAATTTAGCTTAGTATACTC 58.069 37.037 9.12 0.00 36.26 2.59
2956 3080 8.432805 ACCAGCATCAATTTAGCTTAGTATACT 58.567 33.333 10.87 10.87 36.26 2.12
2957 3081 8.608844 ACCAGCATCAATTTAGCTTAGTATAC 57.391 34.615 0.00 0.00 36.26 1.47
2958 3082 9.056005 CAACCAGCATCAATTTAGCTTAGTATA 57.944 33.333 0.00 0.00 36.26 1.47
2959 3083 7.469181 GCAACCAGCATCAATTTAGCTTAGTAT 60.469 37.037 0.00 0.00 44.79 2.12
2960 3084 6.183360 GCAACCAGCATCAATTTAGCTTAGTA 60.183 38.462 0.00 0.00 44.79 1.82
2961 3085 5.393461 GCAACCAGCATCAATTTAGCTTAGT 60.393 40.000 0.00 0.00 44.79 2.24
2962 3086 5.039333 GCAACCAGCATCAATTTAGCTTAG 58.961 41.667 0.00 0.00 44.79 2.18
2992 3116 5.298276 GGTCCATTCGTTATTCCATTAAGCA 59.702 40.000 0.00 0.00 0.00 3.91
3004 3128 5.236282 TGTTGTTTATCGGTCCATTCGTTA 58.764 37.500 0.00 0.00 0.00 3.18
3016 3140 3.731867 GCTCATGGGCTTGTTGTTTATCG 60.732 47.826 11.30 0.00 0.00 2.92
3042 3166 6.619801 ATTTTGAGACTAAACAGTGACACC 57.380 37.500 0.84 0.00 0.00 4.16
3069 3193 9.392259 AGCAAAAAGGTACCTATAATGAAGTAC 57.608 33.333 16.67 0.03 35.44 2.73
3077 3201 7.533289 AAGCAAAGCAAAAAGGTACCTATAA 57.467 32.000 16.67 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.