Multiple sequence alignment - TraesCS7B01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G087400 chr7B 100.000 8282 0 0 1 8282 102238310 102230029 0.000000e+00 15295.0
1 TraesCS7B01G087400 chr7B 95.349 172 7 1 3833 4003 401532722 401532551 1.060000e-68 272.0
2 TraesCS7B01G087400 chr7B 96.610 118 2 2 5254 5370 102232941 102233057 2.360000e-45 195.0
3 TraesCS7B01G087400 chr7B 100.000 89 0 0 4336 4424 102233799 102233711 1.850000e-36 165.0
4 TraesCS7B01G087400 chr7B 100.000 89 0 0 4512 4600 102233975 102233887 1.850000e-36 165.0
5 TraesCS7B01G087400 chr7B 95.385 65 3 0 1009 1073 102237251 102237187 4.090000e-18 104.0
6 TraesCS7B01G087400 chr7B 95.385 65 3 0 1060 1124 102237302 102237238 4.090000e-18 104.0
7 TraesCS7B01G087400 chr7A 96.860 2834 70 7 1009 3834 137773240 137770418 0.000000e+00 4723.0
8 TraesCS7B01G087400 chr7A 90.539 983 62 9 165 1124 137774201 137773227 0.000000e+00 1271.0
9 TraesCS7B01G087400 chr7A 93.077 780 41 8 5362 6130 137769227 137768450 0.000000e+00 1129.0
10 TraesCS7B01G087400 chr7A 90.235 850 39 15 4422 5259 137770044 137769227 0.000000e+00 1070.0
11 TraesCS7B01G087400 chr7A 93.523 633 30 6 6359 6985 137768457 137767830 0.000000e+00 931.0
12 TraesCS7B01G087400 chr7A 95.255 548 17 4 7026 7573 137767828 137767290 0.000000e+00 859.0
13 TraesCS7B01G087400 chr7A 88.219 713 49 17 7580 8282 137767248 137766561 0.000000e+00 819.0
14 TraesCS7B01G087400 chr7A 97.613 377 9 0 3961 4337 137770432 137770056 0.000000e+00 647.0
15 TraesCS7B01G087400 chr7A 96.571 175 5 1 3830 4003 451519808 451519982 1.050000e-73 289.0
16 TraesCS7B01G087400 chr7A 96.386 166 6 0 3833 3998 494786829 494786994 2.950000e-69 274.0
17 TraesCS7B01G087400 chr7A 91.275 149 9 3 5364 5510 491827847 491827701 5.070000e-47 200.0
18 TraesCS7B01G087400 chr7A 97.414 116 3 0 1009 1124 137773291 137773176 1.820000e-46 198.0
19 TraesCS7B01G087400 chr7A 92.647 136 9 1 3700 3834 130229695 130229560 2.360000e-45 195.0
20 TraesCS7B01G087400 chr7A 91.111 90 2 5 4336 4424 137769947 137769863 5.250000e-22 117.0
21 TraesCS7B01G087400 chr7A 81.944 144 11 6 27 169 137774355 137774226 3.160000e-19 108.0
22 TraesCS7B01G087400 chr7A 95.385 65 3 0 1060 1124 137773342 137773278 4.090000e-18 104.0
23 TraesCS7B01G087400 chr7A 92.308 65 5 0 1009 1073 137773189 137773125 8.850000e-15 93.5
24 TraesCS7B01G087400 chr7D 97.877 1931 40 1 1009 2938 137565039 137563109 0.000000e+00 3338.0
25 TraesCS7B01G087400 chr7D 91.867 1955 92 27 6367 8282 137560275 137558349 0.000000e+00 2667.0
26 TraesCS7B01G087400 chr7D 96.778 776 13 6 2935 3701 137562997 137562225 0.000000e+00 1284.0
27 TraesCS7B01G087400 chr7D 94.063 758 31 7 5362 6105 137561032 137560275 0.000000e+00 1138.0
28 TraesCS7B01G087400 chr7D 90.292 855 44 11 4425 5259 137561867 137561032 0.000000e+00 1083.0
29 TraesCS7B01G087400 chr7D 88.026 618 45 9 165 753 137565914 137565297 0.000000e+00 704.0
30 TraesCS7B01G087400 chr7D 97.118 347 10 0 3991 4337 137562228 137561882 3.330000e-163 586.0
31 TraesCS7B01G087400 chr7D 94.410 322 18 0 803 1124 137565296 137564975 5.770000e-136 496.0
32 TraesCS7B01G087400 chr7D 93.724 239 15 0 6122 6360 79873921 79873683 7.900000e-95 359.0
33 TraesCS7B01G087400 chr7D 96.512 172 5 1 3833 4003 397555077 397554906 4.890000e-72 283.0
34 TraesCS7B01G087400 chr7D 91.176 136 11 1 3700 3834 457148949 457148814 5.110000e-42 183.0
35 TraesCS7B01G087400 chr7D 81.879 149 25 2 4981 5128 594022449 594022302 3.140000e-24 124.0
36 TraesCS7B01G087400 chr7D 90.698 86 3 4 4339 4424 137561770 137561690 8.790000e-20 110.0
37 TraesCS7B01G087400 chr7D 98.276 58 1 0 1067 1124 137565083 137565026 1.470000e-17 102.0
38 TraesCS7B01G087400 chr7D 98.214 56 1 0 1018 1073 137564979 137564924 1.900000e-16 99.0
39 TraesCS7B01G087400 chr4D 94.979 239 12 0 6122 6360 177493752 177493990 7.850000e-100 375.0
40 TraesCS7B01G087400 chr4D 93.724 239 14 1 6122 6360 98660529 98660766 2.840000e-94 357.0
41 TraesCS7B01G087400 chr4D 94.253 174 8 2 3826 3999 326382443 326382614 1.770000e-66 265.0
42 TraesCS7B01G087400 chr1B 93.004 243 13 3 6122 6362 288163205 288162965 1.320000e-92 351.0
43 TraesCS7B01G087400 chr1B 93.277 119 7 1 5255 5372 22665268 22665386 3.070000e-39 174.0
44 TraesCS7B01G087400 chr1B 81.437 167 31 0 4956 5122 54872737 54872571 4.030000e-28 137.0
45 TraesCS7B01G087400 chr1B 81.437 167 31 0 4956 5122 597262393 597262227 4.030000e-28 137.0
46 TraesCS7B01G087400 chr3D 92.946 241 15 2 6122 6362 373615692 373615930 4.760000e-92 350.0
47 TraesCS7B01G087400 chr3D 95.783 166 7 0 3833 3998 187836469 187836304 1.370000e-67 268.0
48 TraesCS7B01G087400 chr5D 92.469 239 18 0 6122 6360 518129746 518129984 7.960000e-90 342.0
49 TraesCS7B01G087400 chr5D 91.837 147 12 0 5364 5510 549893199 549893053 1.090000e-48 206.0
50 TraesCS7B01G087400 chr5D 91.912 136 10 1 3700 3834 462567533 462567398 1.100000e-43 189.0
51 TraesCS7B01G087400 chr5D 91.912 136 10 1 3700 3834 462568687 462568552 1.100000e-43 189.0
52 TraesCS7B01G087400 chr5D 83.432 169 24 4 4956 5122 370143318 370143484 4.000000e-33 154.0
53 TraesCS7B01G087400 chr4B 92.116 241 19 0 6122 6362 330426685 330426925 2.860000e-89 340.0
54 TraesCS7B01G087400 chr4B 91.729 133 9 2 3699 3829 498397571 498397439 5.110000e-42 183.0
55 TraesCS7B01G087400 chr4B 85.315 143 19 2 4956 5097 415666574 415666715 6.700000e-31 147.0
56 TraesCS7B01G087400 chr4B 82.143 168 28 2 4956 5122 415720097 415720263 8.670000e-30 143.0
57 TraesCS7B01G087400 chr1D 92.050 239 19 0 6122 6360 465991034 465990796 3.700000e-88 337.0
58 TraesCS7B01G087400 chr2B 90.800 250 22 1 6122 6371 398691140 398691388 4.790000e-87 333.0
59 TraesCS7B01G087400 chr2B 94.737 114 5 1 5256 5369 531050023 531049911 8.540000e-40 176.0
60 TraesCS7B01G087400 chr3A 95.783 166 7 0 3833 3998 238686210 238686375 1.370000e-67 268.0
61 TraesCS7B01G087400 chr3A 90.323 155 9 4 5365 5518 169855923 169856072 1.820000e-46 198.0
62 TraesCS7B01G087400 chr3A 92.537 67 4 1 5112 5178 637615611 637615676 2.460000e-15 95.3
63 TraesCS7B01G087400 chr6B 93.296 179 10 2 3832 4009 615991223 615991046 6.370000e-66 263.0
64 TraesCS7B01G087400 chr6D 84.553 246 36 2 3754 3998 432678417 432678173 8.300000e-60 243.0
65 TraesCS7B01G087400 chr6D 83.333 174 27 2 4956 5128 248583004 248582832 8.600000e-35 159.0
66 TraesCS7B01G087400 chr5A 91.772 158 9 3 5364 5519 47458916 47459071 5.030000e-52 217.0
67 TraesCS7B01G087400 chr5A 90.446 157 11 3 5364 5518 3455632 3455478 3.920000e-48 204.0
68 TraesCS7B01G087400 chr5A 91.275 149 9 3 5364 5510 299777059 299776913 5.070000e-47 200.0
69 TraesCS7B01G087400 chr1A 90.446 157 10 4 5364 5518 452758571 452758724 1.410000e-47 202.0
70 TraesCS7B01G087400 chr1A 93.284 134 8 1 3699 3831 516570621 516570488 6.560000e-46 196.0
71 TraesCS7B01G087400 chr4A 97.297 111 3 0 5258 5368 714338877 714338987 1.100000e-43 189.0
72 TraesCS7B01G087400 chr5B 96.460 113 4 0 5256 5368 507688108 507688220 3.950000e-43 187.0
73 TraesCS7B01G087400 chr3B 94.215 121 5 2 5255 5375 777611839 777611721 5.110000e-42 183.0
74 TraesCS7B01G087400 chr3B 94.017 117 7 0 5256 5372 579888590 579888706 2.380000e-40 178.0
75 TraesCS7B01G087400 chr3B 93.333 120 6 2 5254 5372 777611725 777611843 8.540000e-40 176.0
76 TraesCS7B01G087400 chr3B 84.524 168 24 2 4956 5122 631963610 631963776 1.850000e-36 165.0
77 TraesCS7B01G087400 chr2A 91.176 136 9 2 3700 3834 107386657 107386524 1.840000e-41 182.0
78 TraesCS7B01G087400 chrUn 94.495 109 6 0 5257 5365 316483465 316483357 1.430000e-37 169.0
79 TraesCS7B01G087400 chr2D 80.537 149 27 2 4981 5128 305521823 305521676 6.790000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G087400 chr7B 102230029 102238310 8281 True 15295.000000 15295 100.000000 1 8282 1 chr7B.!!$R1 8281
1 TraesCS7B01G087400 chr7A 137766561 137774355 7794 True 928.423077 4723 92.575615 27 8282 13 chr7A.!!$R3 8255
2 TraesCS7B01G087400 chr7D 137558349 137565914 7565 True 1055.181818 3338 94.329000 165 8282 11 chr7D.!!$R5 8117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1084 0.039035 ATTGGTAAGCTTTCCCCGCA 59.961 50.0 18.43 0.00 0.00 5.69 F
1294 1483 1.107538 CAGAAGCCCTGATGCCATGG 61.108 60.0 7.63 7.63 45.78 3.66 F
2082 2271 0.679960 CTTTGCCTCCTTTACCCGGG 60.680 60.0 22.25 22.25 0.00 5.73 F
3372 3684 0.669318 ACGCGTTAGTGACATGTGGG 60.669 55.0 5.58 0.00 0.00 4.61 F
3714 4028 1.302907 TAGGTACTCCCTCCGTTCCT 58.697 55.0 0.00 0.00 44.81 3.36 F
5051 5396 0.035152 TCGGGTAGACTAGTTCGCCA 60.035 55.0 0.00 0.00 0.00 5.69 F
6335 6699 0.388520 GCACAAAATGCGAAGGGGAC 60.389 55.0 0.00 0.00 46.55 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 2017 1.393603 TGCATGAACAACCGAACCAA 58.606 45.0 0.00 0.0 0.00 3.67 R
3182 3494 2.099756 GGCATTAGGGCAATCAAGACAC 59.900 50.0 0.00 0.0 42.77 3.67 R
3697 4011 2.149973 TAAGGAACGGAGGGAGTACC 57.850 55.0 0.00 0.0 40.67 3.34 R
4398 4713 0.108041 TTCCGGGAACTGATTACGCC 60.108 55.0 5.09 0.0 36.31 5.68 R
5347 5696 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.00 3.28 R
6444 6808 0.030638 CTTGGTTGACCGCTGTTTGG 59.969 55.0 0.00 0.0 39.43 3.28 R
7444 7815 0.179166 CGGAACATGGTTGATTGGCG 60.179 55.0 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.437850 GTTTATCGCGTCGTGGTGT 58.562 52.632 5.77 0.00 0.00 4.16
19 20 0.364515 GTTTATCGCGTCGTGGTGTC 59.635 55.000 5.77 0.00 0.00 3.67
20 21 1.066656 TTTATCGCGTCGTGGTGTCG 61.067 55.000 5.77 0.00 0.00 4.35
21 22 2.854079 TTATCGCGTCGTGGTGTCGG 62.854 60.000 5.77 0.00 0.00 4.79
38 39 4.554036 GGGCCTGGGATCTCGTGC 62.554 72.222 0.84 0.00 0.00 5.34
39 40 3.474570 GGCCTGGGATCTCGTGCT 61.475 66.667 0.00 0.00 0.00 4.40
41 42 3.023949 GCCTGGGATCTCGTGCTGT 62.024 63.158 0.00 0.00 0.00 4.40
45 46 0.389817 TGGGATCTCGTGCTGTTTCG 60.390 55.000 0.00 0.00 0.00 3.46
48 49 1.402984 GGATCTCGTGCTGTTTCGTCT 60.403 52.381 0.00 0.00 0.00 4.18
95 96 2.749776 CCGATTGGTTGTTTTGGTTCC 58.250 47.619 0.00 0.00 0.00 3.62
97 98 2.131972 GATTGGTTGTTTTGGTTCCGC 58.868 47.619 0.00 0.00 0.00 5.54
108 109 1.669760 GGTTCCGCGTGTTCATCCA 60.670 57.895 4.92 0.00 0.00 3.41
109 110 1.495951 GTTCCGCGTGTTCATCCAC 59.504 57.895 4.92 0.00 0.00 4.02
110 111 1.669760 TTCCGCGTGTTCATCCACC 60.670 57.895 4.92 0.00 31.47 4.61
111 112 3.487202 CCGCGTGTTCATCCACCG 61.487 66.667 4.92 0.00 31.47 4.94
112 113 2.431771 CGCGTGTTCATCCACCGA 60.432 61.111 0.00 0.00 33.63 4.69
113 114 1.809619 CGCGTGTTCATCCACCGAT 60.810 57.895 0.00 0.00 33.63 4.18
114 115 1.715585 GCGTGTTCATCCACCGATG 59.284 57.895 0.00 0.00 46.30 3.84
115 116 1.019278 GCGTGTTCATCCACCGATGT 61.019 55.000 0.38 0.00 45.32 3.06
116 117 1.438651 CGTGTTCATCCACCGATGTT 58.561 50.000 0.38 0.00 45.32 2.71
117 118 1.804151 CGTGTTCATCCACCGATGTTT 59.196 47.619 0.38 0.00 45.32 2.83
118 119 2.412716 CGTGTTCATCCACCGATGTTTG 60.413 50.000 0.38 0.00 45.32 2.93
119 120 2.552315 GTGTTCATCCACCGATGTTTGT 59.448 45.455 0.38 0.00 45.32 2.83
126 127 0.238289 CACCGATGTTTGTGGACAGC 59.762 55.000 0.00 0.00 32.19 4.40
129 130 2.629002 GATGTTTGTGGACAGCGGT 58.371 52.632 0.00 0.00 32.19 5.68
130 131 0.951558 GATGTTTGTGGACAGCGGTT 59.048 50.000 0.00 0.00 32.19 4.44
131 132 1.336755 GATGTTTGTGGACAGCGGTTT 59.663 47.619 0.00 0.00 32.19 3.27
132 133 0.453793 TGTTTGTGGACAGCGGTTTG 59.546 50.000 0.00 0.00 0.00 2.93
133 134 0.248866 GTTTGTGGACAGCGGTTTGG 60.249 55.000 0.00 0.00 0.00 3.28
134 135 1.388065 TTTGTGGACAGCGGTTTGGG 61.388 55.000 0.00 0.00 0.00 4.12
135 136 2.983592 GTGGACAGCGGTTTGGGG 60.984 66.667 0.00 0.00 0.00 4.96
136 137 4.278513 TGGACAGCGGTTTGGGGG 62.279 66.667 0.00 0.00 0.00 5.40
167 198 1.740585 CGGGTTTATTGTCGGAATGCA 59.259 47.619 0.00 0.00 0.00 3.96
185 216 1.472552 GCAATTAATCCGGGGGTTTGC 60.473 52.381 0.00 7.91 0.00 3.68
214 249 4.937620 GTGAGATCTCAACCTGTAAATGCA 59.062 41.667 26.70 0.00 41.85 3.96
231 266 1.074319 GCATTTGAGTGCGCACATGG 61.074 55.000 39.21 22.88 35.10 3.66
273 318 3.635331 TGATTACGCGGATTAGTACTGC 58.365 45.455 12.47 0.00 36.43 4.40
313 358 3.006940 TGCCAGATTGGTAACGTTGATC 58.993 45.455 11.99 9.03 40.46 2.92
322 367 3.575256 TGGTAACGTTGATCTACTGGTGT 59.425 43.478 11.99 0.00 42.51 4.16
371 420 1.000283 TGTTTGCATTTGGGGCGTTAG 60.000 47.619 0.00 0.00 0.00 2.34
396 445 2.238898 GTCAGGTACTATTTGCCCAGGT 59.761 50.000 0.00 0.00 36.02 4.00
399 448 4.536888 TCAGGTACTATTTGCCCAGGTTTA 59.463 41.667 0.00 0.00 36.02 2.01
406 455 3.760580 TTTGCCCAGGTTTAATGGTTG 57.239 42.857 0.00 0.00 35.96 3.77
414 463 1.814394 GGTTTAATGGTTGGTCGTCCC 59.186 52.381 0.00 0.00 0.00 4.46
430 479 3.880846 CCGCGGGCAGAGCATTTC 61.881 66.667 20.10 0.00 34.19 2.17
450 499 2.026542 TCTGGATGCTGCTTCTGATTGT 60.027 45.455 14.20 0.00 0.00 2.71
468 517 0.978385 GTCGATCGCGTGCATATCTC 59.022 55.000 11.09 0.00 38.98 2.75
492 541 4.793678 GCAGTTCATCATGCACAACAAAGA 60.794 41.667 0.00 0.00 42.11 2.52
623 681 8.159344 AGTCTAATATAAAAGCATTCACCTGC 57.841 34.615 0.00 0.00 42.62 4.85
624 682 7.775093 AGTCTAATATAAAAGCATTCACCTGCA 59.225 33.333 0.00 0.00 44.77 4.41
625 683 8.571336 GTCTAATATAAAAGCATTCACCTGCAT 58.429 33.333 0.00 0.00 44.77 3.96
626 684 9.135189 TCTAATATAAAAGCATTCACCTGCATT 57.865 29.630 0.00 0.00 44.77 3.56
627 685 9.403110 CTAATATAAAAGCATTCACCTGCATTC 57.597 33.333 0.00 0.00 44.77 2.67
628 686 2.642139 AAAGCATTCACCTGCATTCG 57.358 45.000 0.00 0.00 44.77 3.34
665 751 2.285083 GTACTAACCATGCCATGCGAA 58.715 47.619 0.00 0.00 0.00 4.70
666 752 1.832883 ACTAACCATGCCATGCGAAA 58.167 45.000 0.00 0.00 0.00 3.46
716 803 6.603940 TGCCCTCTATGCAAATTTAACTTT 57.396 33.333 0.00 0.00 35.40 2.66
753 840 5.468592 TCCATTTTGACATATGTGTTGTGC 58.531 37.500 14.43 0.00 39.09 4.57
759 846 3.244526 TGACATATGTGTTGTGCTGGTCT 60.245 43.478 14.43 0.00 39.09 3.85
760 847 4.020662 TGACATATGTGTTGTGCTGGTCTA 60.021 41.667 14.43 0.00 39.09 2.59
761 848 5.102953 ACATATGTGTTGTGCTGGTCTAT 57.897 39.130 7.78 0.00 34.01 1.98
776 863 6.707608 TGCTGGTCTATGACATATGACAAATC 59.292 38.462 10.38 1.31 33.68 2.17
778 865 7.135591 TGGTCTATGACATATGACAAATCCA 57.864 36.000 10.38 13.36 33.68 3.41
822 909 9.513906 TGAAATTTTTGTCATATGGTAGAGACA 57.486 29.630 2.13 0.00 39.06 3.41
828 915 7.712204 TTGTCATATGGTAGAGACAACTGTA 57.288 36.000 2.13 0.00 43.66 2.74
854 941 7.671398 ACCACATGTCTTTGATATTCTCCTTTT 59.329 33.333 0.00 0.00 0.00 2.27
910 997 8.995577 AGAATTTTATTTCCATCCATTCCATGT 58.004 29.630 0.00 0.00 0.00 3.21
965 1052 4.071961 TGCACAAGCTTCTTACTTGAGA 57.928 40.909 10.26 0.00 45.99 3.27
967 1054 3.809832 GCACAAGCTTCTTACTTGAGACA 59.190 43.478 10.26 0.00 45.99 3.41
993 1080 2.446435 TGCAGATTGGTAAGCTTTCCC 58.554 47.619 18.43 12.85 0.00 3.97
997 1084 0.039035 ATTGGTAAGCTTTCCCCGCA 59.961 50.000 18.43 0.00 0.00 5.69
1204 1393 7.463961 AATTCAATGAGTGAGAATTCAAGCT 57.536 32.000 8.44 1.86 37.39 3.74
1294 1483 1.107538 CAGAAGCCCTGATGCCATGG 61.108 60.000 7.63 7.63 45.78 3.66
1413 1602 2.662006 TGAGGCGTTCTTCTGATCAG 57.338 50.000 17.07 17.07 0.00 2.90
1614 1803 4.074970 CAAGTGGCAATGGTAAGAAGACT 58.925 43.478 0.00 0.00 0.00 3.24
1625 1814 7.962995 ATGGTAAGAAGACTGTCTCAGATTA 57.037 36.000 11.31 5.52 35.18 1.75
1628 1817 7.147828 TGGTAAGAAGACTGTCTCAGATTATGG 60.148 40.741 11.31 0.00 35.18 2.74
1742 1931 3.268032 AACTGGGGAAGCTGGGGG 61.268 66.667 0.00 0.00 0.00 5.40
1828 2017 4.091549 ACTGGGATGTGAAGATTGCAAAT 58.908 39.130 1.71 0.00 0.00 2.32
2082 2271 0.679960 CTTTGCCTCCTTTACCCGGG 60.680 60.000 22.25 22.25 0.00 5.73
2362 2552 4.142160 GGTTTTGTCTGACTTTTGAGGCTT 60.142 41.667 9.51 0.00 0.00 4.35
2650 2840 6.435904 TGTTGGTTGGAATATTTGGAGGTTAG 59.564 38.462 0.00 0.00 0.00 2.34
3181 3493 9.965902 AGACTGATAATTGATAACTTGGTTCTT 57.034 29.630 0.00 0.00 0.00 2.52
3182 3494 9.994432 GACTGATAATTGATAACTTGGTTCTTG 57.006 33.333 0.00 0.00 0.00 3.02
3313 3625 3.118920 TGACCTGTCACGTGAAGAAAAGA 60.119 43.478 21.95 0.00 34.14 2.52
3372 3684 0.669318 ACGCGTTAGTGACATGTGGG 60.669 55.000 5.58 0.00 0.00 4.61
3522 3834 3.815809 TCTTGTGAAACCTTTCGGACAT 58.184 40.909 0.00 0.00 40.01 3.06
3555 3867 2.297701 TCCAAGGTGAACAAAGCAGAC 58.702 47.619 0.00 0.00 0.00 3.51
3706 4020 6.444171 AAGTTATGCTTCTTTAGGTACTCCCT 59.556 38.462 0.00 0.00 39.24 4.20
3714 4028 1.302907 TAGGTACTCCCTCCGTTCCT 58.697 55.000 0.00 0.00 44.81 3.36
3731 4045 8.953368 TCCGTTCCTTAATATAAGACCTTTTC 57.047 34.615 0.00 0.00 0.00 2.29
3838 4153 6.819397 AAAGCTAAAATGTCTTGTACTCCC 57.181 37.500 0.00 0.00 0.00 4.30
3839 4154 5.763876 AGCTAAAATGTCTTGTACTCCCT 57.236 39.130 0.00 0.00 0.00 4.20
3840 4155 5.735766 AGCTAAAATGTCTTGTACTCCCTC 58.264 41.667 0.00 0.00 0.00 4.30
3841 4156 5.485708 AGCTAAAATGTCTTGTACTCCCTCT 59.514 40.000 0.00 0.00 0.00 3.69
3842 4157 5.582665 GCTAAAATGTCTTGTACTCCCTCTG 59.417 44.000 0.00 0.00 0.00 3.35
3843 4158 5.568620 AAAATGTCTTGTACTCCCTCTGT 57.431 39.130 0.00 0.00 0.00 3.41
3844 4159 5.568620 AAATGTCTTGTACTCCCTCTGTT 57.431 39.130 0.00 0.00 0.00 3.16
3845 4160 4.810191 ATGTCTTGTACTCCCTCTGTTC 57.190 45.455 0.00 0.00 0.00 3.18
3846 4161 2.897969 TGTCTTGTACTCCCTCTGTTCC 59.102 50.000 0.00 0.00 0.00 3.62
3847 4162 3.166679 GTCTTGTACTCCCTCTGTTCCT 58.833 50.000 0.00 0.00 0.00 3.36
3848 4163 4.202641 TGTCTTGTACTCCCTCTGTTCCTA 60.203 45.833 0.00 0.00 0.00 2.94
3849 4164 4.771054 GTCTTGTACTCCCTCTGTTCCTAA 59.229 45.833 0.00 0.00 0.00 2.69
3850 4165 5.245526 GTCTTGTACTCCCTCTGTTCCTAAA 59.754 44.000 0.00 0.00 0.00 1.85
3851 4166 6.023603 TCTTGTACTCCCTCTGTTCCTAAAT 58.976 40.000 0.00 0.00 0.00 1.40
3852 4167 7.123847 GTCTTGTACTCCCTCTGTTCCTAAATA 59.876 40.741 0.00 0.00 0.00 1.40
3853 4168 7.844779 TCTTGTACTCCCTCTGTTCCTAAATAT 59.155 37.037 0.00 0.00 0.00 1.28
3854 4169 9.144298 CTTGTACTCCCTCTGTTCCTAAATATA 57.856 37.037 0.00 0.00 0.00 0.86
3855 4170 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
3856 4171 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
3857 4172 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
3858 4173 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
3859 4174 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
3860 4175 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
3861 4176 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
3862 4177 9.549078 CCCTCTGTTCCTAAATATAAGTCTTTC 57.451 37.037 0.00 0.00 0.00 2.62
3890 4205 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
3891 4206 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
3892 4207 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
3893 4208 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
3895 4210 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
3896 4211 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
3897 4212 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
3902 4217 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
3903 4218 7.493645 TGGACTACATACGGATGTATATAGACG 59.506 40.741 20.64 9.79 45.42 4.18
3904 4219 7.493971 GGACTACATACGGATGTATATAGACGT 59.506 40.741 20.64 12.85 45.42 4.34
3905 4220 9.521503 GACTACATACGGATGTATATAGACGTA 57.478 37.037 20.64 9.65 45.42 3.57
3906 4221 9.526713 ACTACATACGGATGTATATAGACGTAG 57.473 37.037 20.64 9.36 45.42 3.51
3907 4222 9.526713 CTACATACGGATGTATATAGACGTAGT 57.473 37.037 20.64 11.55 45.77 2.73
3908 4223 8.783833 ACATACGGATGTATATAGACGTAGTT 57.216 34.615 12.79 0.00 43.41 2.24
3909 4224 9.224267 ACATACGGATGTATATAGACGTAGTTT 57.776 33.333 12.79 0.00 43.41 2.66
3925 4240 7.684937 ACGTAGTTTAGAGTGTAGATTCACT 57.315 36.000 0.00 0.00 45.46 3.41
3935 4250 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3936 4251 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3937 4252 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
3938 4253 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
3939 4254 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
3940 4255 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
3941 4256 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
3942 4257 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
3943 4258 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
3944 4259 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
3945 4260 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
3946 4261 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
3947 4262 6.765036 CACTCATTTTGCTCCATATGTAGTCT 59.235 38.462 1.24 0.00 0.00 3.24
3948 4263 7.928167 CACTCATTTTGCTCCATATGTAGTCTA 59.072 37.037 1.24 0.00 0.00 2.59
3949 4264 8.654997 ACTCATTTTGCTCCATATGTAGTCTAT 58.345 33.333 1.24 0.00 0.00 1.98
3954 4269 9.725019 TTTTGCTCCATATGTAGTCTATATTGG 57.275 33.333 1.24 3.77 0.00 3.16
3955 4270 8.664669 TTGCTCCATATGTAGTCTATATTGGA 57.335 34.615 14.20 14.20 0.00 3.53
3956 4271 8.664669 TGCTCCATATGTAGTCTATATTGGAA 57.335 34.615 15.05 5.71 0.00 3.53
3957 4272 9.271921 TGCTCCATATGTAGTCTATATTGGAAT 57.728 33.333 15.05 0.00 0.00 3.01
3958 4273 9.757227 GCTCCATATGTAGTCTATATTGGAATC 57.243 37.037 15.05 9.94 0.00 2.52
4345 4660 4.771590 CATGTGTGCAAGGATGTTACTT 57.228 40.909 0.00 0.00 0.00 2.24
4346 4661 5.125100 CATGTGTGCAAGGATGTTACTTT 57.875 39.130 0.00 0.00 0.00 2.66
4347 4662 5.531634 CATGTGTGCAAGGATGTTACTTTT 58.468 37.500 0.00 0.00 0.00 2.27
4348 4663 5.590530 TGTGTGCAAGGATGTTACTTTTT 57.409 34.783 0.00 0.00 0.00 1.94
4370 4685 7.707774 TTTTTCCGGAAGAAATGATTGAAAC 57.292 32.000 17.22 0.00 43.93 2.78
4371 4686 6.648879 TTTCCGGAAGAAATGATTGAAACT 57.351 33.333 17.97 0.00 39.60 2.66
4372 4687 6.648879 TTCCGGAAGAAATGATTGAAACTT 57.351 33.333 14.35 0.00 0.00 2.66
4373 4688 7.753309 TTCCGGAAGAAATGATTGAAACTTA 57.247 32.000 14.35 0.00 0.00 2.24
4374 4689 7.141100 TCCGGAAGAAATGATTGAAACTTAC 57.859 36.000 0.00 0.00 0.00 2.34
4375 4690 6.150474 TCCGGAAGAAATGATTGAAACTTACC 59.850 38.462 0.00 0.00 0.00 2.85
4376 4691 6.151144 CCGGAAGAAATGATTGAAACTTACCT 59.849 38.462 0.00 0.00 0.00 3.08
4377 4692 7.335924 CCGGAAGAAATGATTGAAACTTACCTA 59.664 37.037 0.00 0.00 0.00 3.08
4378 4693 8.391106 CGGAAGAAATGATTGAAACTTACCTAG 58.609 37.037 0.00 0.00 0.00 3.02
4379 4694 9.232473 GGAAGAAATGATTGAAACTTACCTAGT 57.768 33.333 0.00 0.00 39.32 2.57
4384 4699 8.928270 AATGATTGAAACTTACCTAGTACTCG 57.072 34.615 0.00 0.00 35.54 4.18
4385 4700 7.458409 TGATTGAAACTTACCTAGTACTCGT 57.542 36.000 0.00 0.00 35.54 4.18
4386 4701 8.565896 TGATTGAAACTTACCTAGTACTCGTA 57.434 34.615 0.00 0.00 35.54 3.43
4387 4702 9.182214 TGATTGAAACTTACCTAGTACTCGTAT 57.818 33.333 0.00 0.00 35.54 3.06
4388 4703 9.448294 GATTGAAACTTACCTAGTACTCGTATG 57.552 37.037 0.00 6.53 35.54 2.39
4389 4704 7.928307 TGAAACTTACCTAGTACTCGTATGT 57.072 36.000 0.00 7.14 35.54 2.29
4390 4705 9.448438 TTGAAACTTACCTAGTACTCGTATGTA 57.552 33.333 15.94 4.74 35.54 2.29
4391 4706 9.102757 TGAAACTTACCTAGTACTCGTATGTAG 57.897 37.037 15.94 8.96 35.54 2.74
4392 4707 8.443953 AAACTTACCTAGTACTCGTATGTAGG 57.556 38.462 15.94 11.21 35.54 3.18
4393 4708 5.994668 ACTTACCTAGTACTCGTATGTAGGC 59.005 44.000 14.83 0.00 34.56 3.93
4394 4709 3.749226 ACCTAGTACTCGTATGTAGGCC 58.251 50.000 0.00 0.00 34.67 5.19
4395 4710 3.393941 ACCTAGTACTCGTATGTAGGCCT 59.606 47.826 11.78 11.78 34.67 5.19
4396 4711 4.594920 ACCTAGTACTCGTATGTAGGCCTA 59.405 45.833 8.91 8.91 34.67 3.93
4397 4712 5.177326 CCTAGTACTCGTATGTAGGCCTAG 58.823 50.000 14.38 3.40 0.00 3.02
4398 4713 4.018484 AGTACTCGTATGTAGGCCTAGG 57.982 50.000 14.38 3.67 0.00 3.02
4399 4714 2.289592 ACTCGTATGTAGGCCTAGGG 57.710 55.000 14.38 3.13 0.00 3.53
4411 4726 1.867166 GCCTAGGGCGTAATCAGTTC 58.133 55.000 11.72 0.00 39.62 3.01
4412 4727 1.540580 GCCTAGGGCGTAATCAGTTCC 60.541 57.143 11.72 0.00 39.62 3.62
4413 4728 1.070289 CCTAGGGCGTAATCAGTTCCC 59.930 57.143 0.00 0.00 37.24 3.97
4414 4729 0.748450 TAGGGCGTAATCAGTTCCCG 59.252 55.000 0.00 0.00 41.76 5.14
4415 4730 1.523032 GGGCGTAATCAGTTCCCGG 60.523 63.158 0.00 0.00 0.00 5.73
4416 4731 1.518774 GGCGTAATCAGTTCCCGGA 59.481 57.895 0.73 0.00 0.00 5.14
4417 4732 0.108041 GGCGTAATCAGTTCCCGGAA 60.108 55.000 0.73 0.00 0.00 4.30
4418 4733 1.676615 GGCGTAATCAGTTCCCGGAAA 60.677 52.381 0.73 0.00 0.00 3.13
4419 4734 2.285977 GCGTAATCAGTTCCCGGAAAT 58.714 47.619 0.73 0.00 0.00 2.17
4420 4735 2.287103 GCGTAATCAGTTCCCGGAAATC 59.713 50.000 0.73 0.00 0.00 2.17
4427 4742 3.194968 TCAGTTCCCGGAAATCTGAGTAC 59.805 47.826 13.87 0.00 32.49 2.73
4460 4775 2.097036 TGTGTACTAGTGGATGGTCGG 58.903 52.381 5.39 0.00 0.00 4.79
4560 4890 8.928270 AATGATTGAAACTTACCTAGTACTCG 57.072 34.615 0.00 0.00 35.54 4.18
4561 4891 7.458409 TGATTGAAACTTACCTAGTACTCGT 57.542 36.000 0.00 0.00 35.54 4.18
4562 4892 8.565896 TGATTGAAACTTACCTAGTACTCGTA 57.434 34.615 0.00 0.00 35.54 3.43
4563 4893 9.182214 TGATTGAAACTTACCTAGTACTCGTAT 57.818 33.333 0.00 0.00 35.54 3.06
4564 4894 9.448294 GATTGAAACTTACCTAGTACTCGTATG 57.552 37.037 0.00 6.53 35.54 2.39
4565 4895 7.928307 TGAAACTTACCTAGTACTCGTATGT 57.072 36.000 0.00 7.14 35.54 2.29
4566 4896 9.448438 TTGAAACTTACCTAGTACTCGTATGTA 57.552 33.333 15.94 4.74 35.54 2.29
4597 4927 3.793559 CGTAATCAGTTCCCGGAAATCT 58.206 45.455 0.73 0.00 0.00 2.40
4649 4979 8.871629 TGTGTTTCCATTATATGTTTACCTGT 57.128 30.769 0.00 0.00 0.00 4.00
4650 4980 9.303116 TGTGTTTCCATTATATGTTTACCTGTT 57.697 29.630 0.00 0.00 0.00 3.16
4682 5016 9.388506 CTATGGTTGTAGAAAGTCAGATTGAAT 57.611 33.333 0.00 0.00 0.00 2.57
4739 5073 0.485099 TAAAGGGCTGCCAAGGGAAA 59.515 50.000 22.05 0.00 0.00 3.13
4789 5123 2.915349 CCAGCTGATCTGCATTGTACT 58.085 47.619 24.33 1.18 41.50 2.73
4801 5135 8.848474 ATCTGCATTGTACTACTTGTTTTAGT 57.152 30.769 0.00 0.00 34.15 2.24
4813 5147 3.788227 TGTTTTAGTGCACTGGGATCT 57.212 42.857 29.57 3.42 0.00 2.75
4847 5181 1.274167 ACTTGCCAAATCAGCCACATG 59.726 47.619 0.00 0.00 0.00 3.21
4848 5182 0.609151 TTGCCAAATCAGCCACATGG 59.391 50.000 0.00 0.00 38.53 3.66
4870 5204 0.109781 CACACAACCGTTAGCATGCC 60.110 55.000 15.66 0.00 0.00 4.40
4892 5226 5.163814 GCCATAGCAGCACTACAATATTAGC 60.164 44.000 0.00 0.00 39.53 3.09
4915 5249 5.623335 CGCGACATTCTATTTAAAACACCA 58.377 37.500 0.00 0.00 0.00 4.17
5010 5355 2.352388 AGACTACTCTCTGAGTCGCAC 58.648 52.381 4.32 0.00 45.57 5.34
5051 5396 0.035152 TCGGGTAGACTAGTTCGCCA 60.035 55.000 0.00 0.00 0.00 5.69
5110 5455 3.244249 GGACTAGTCCTGCACTTTGAGTT 60.244 47.826 31.12 0.00 46.16 3.01
5259 5608 7.204496 ACTGTACTGTGCTACTGCTATATAC 57.796 40.000 4.39 0.00 40.48 1.47
5261 5610 7.173562 ACTGTACTGTGCTACTGCTATATACTC 59.826 40.741 4.39 0.00 40.48 2.59
5263 5612 4.767928 ACTGTGCTACTGCTATATACTCCC 59.232 45.833 0.00 0.00 40.48 4.30
5264 5613 4.999310 TGTGCTACTGCTATATACTCCCT 58.001 43.478 0.00 0.00 40.48 4.20
5265 5614 5.010933 TGTGCTACTGCTATATACTCCCTC 58.989 45.833 0.00 0.00 40.48 4.30
5266 5615 4.399934 GTGCTACTGCTATATACTCCCTCC 59.600 50.000 0.00 0.00 40.48 4.30
5267 5616 3.628487 GCTACTGCTATATACTCCCTCCG 59.372 52.174 0.00 0.00 36.03 4.63
5268 5617 3.810721 ACTGCTATATACTCCCTCCGT 57.189 47.619 0.00 0.00 0.00 4.69
5269 5618 3.688235 ACTGCTATATACTCCCTCCGTC 58.312 50.000 0.00 0.00 0.00 4.79
5270 5619 3.018149 CTGCTATATACTCCCTCCGTCC 58.982 54.545 0.00 0.00 0.00 4.79
5271 5620 2.291411 TGCTATATACTCCCTCCGTCCC 60.291 54.545 0.00 0.00 0.00 4.46
5272 5621 2.291411 GCTATATACTCCCTCCGTCCCA 60.291 54.545 0.00 0.00 0.00 4.37
5273 5622 3.816842 GCTATATACTCCCTCCGTCCCAA 60.817 52.174 0.00 0.00 0.00 4.12
5274 5623 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
5275 5624 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5276 5625 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5277 5626 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5278 5627 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5279 5628 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5280 5629 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5281 5630 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5282 5631 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
5283 5632 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
5284 5633 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
5285 5634 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5286 5635 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
5287 5636 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5288 5637 4.517453 CCGTCCCAAAATAAGTGACTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
5289 5638 5.009210 CCGTCCCAAAATAAGTGACTCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
5290 5639 6.142817 CGTCCCAAAATAAGTGACTCAAAAG 58.857 40.000 0.00 0.00 0.00 2.27
5291 5640 6.238648 CGTCCCAAAATAAGTGACTCAAAAGT 60.239 38.462 0.00 0.00 38.88 2.66
5292 5641 6.918022 GTCCCAAAATAAGTGACTCAAAAGTG 59.082 38.462 0.00 0.00 35.28 3.16
5293 5642 6.831353 TCCCAAAATAAGTGACTCAAAAGTGA 59.169 34.615 0.00 0.00 35.28 3.41
5336 5685 9.834628 TTTTAGTACAAAGTTCACTCACTTTTG 57.165 29.630 0.00 0.00 43.17 2.44
5337 5686 8.780846 TTAGTACAAAGTTCACTCACTTTTGA 57.219 30.769 0.00 0.00 43.17 2.69
5352 5701 7.038154 TCACTTTTGAGTCACTTATTTTGGG 57.962 36.000 0.00 0.00 0.00 4.12
5353 5702 6.831353 TCACTTTTGAGTCACTTATTTTGGGA 59.169 34.615 0.00 0.00 0.00 4.37
5354 5703 6.918022 CACTTTTGAGTCACTTATTTTGGGAC 59.082 38.462 0.00 0.00 0.00 4.46
5355 5704 5.682943 TTTGAGTCACTTATTTTGGGACG 57.317 39.130 0.00 0.00 33.84 4.79
5356 5705 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
5357 5706 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
5358 5707 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
5359 5708 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5360 5709 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
5361 5710 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5362 5711 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5363 5712 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5364 5713 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5462 5811 4.825085 AGTCCAGCAATAGTCTAGACTAGC 59.175 45.833 30.78 28.09 45.94 3.42
5465 5814 4.526262 CCAGCAATAGTCTAGACTAGCCAT 59.474 45.833 30.78 17.05 45.94 4.40
5592 5943 3.069443 CCTTGTTTGTAATTGCAGGTGGT 59.931 43.478 0.00 0.00 0.00 4.16
5660 6011 2.375174 ACCAAATCTGGACCTGCACTTA 59.625 45.455 0.00 0.00 46.92 2.24
5752 6103 3.005554 ACTGATTGTTGATCCTGAAGCG 58.994 45.455 0.00 0.00 33.60 4.68
5869 6221 3.057734 GCTTAGTAGTGTGCGACTGTTT 58.942 45.455 0.00 0.00 35.96 2.83
5899 6251 8.879759 ACCAGAATTTGTAGTATAACAATGACG 58.120 33.333 0.00 0.00 39.04 4.35
5932 6284 4.338379 AGAGCTATTTACCGGAACATCC 57.662 45.455 9.46 0.00 0.00 3.51
5970 6322 9.640963 ATGTTCAATAGTACTACTGACTTCAAC 57.359 33.333 13.37 9.33 0.00 3.18
5972 6324 9.130312 GTTCAATAGTACTACTGACTTCAACAG 57.870 37.037 13.37 0.00 40.68 3.16
5992 6349 9.524496 TCAACAGACAGTTACTCTAGGTATAAA 57.476 33.333 0.00 0.00 38.74 1.40
6023 6380 5.423015 CCTAGAGCTGCTTGAAACATAAGA 58.577 41.667 2.53 0.00 0.00 2.10
6032 6389 9.265901 GCTGCTTGAAACATAAGATAGATAAGA 57.734 33.333 0.00 0.00 0.00 2.10
6052 6416 8.690680 ATAAGACAGTTACTCTAGCTTTTTCG 57.309 34.615 0.00 0.00 0.00 3.46
6101 6465 2.173569 ACCTGTCTGATTTGGGGCTATC 59.826 50.000 0.00 0.00 0.00 2.08
6108 6472 1.683385 GATTTGGGGCTATCCTTGTGC 59.317 52.381 0.00 0.00 35.33 4.57
6131 6495 5.359716 GTCATAGTGACATACTACCTCCG 57.640 47.826 5.28 0.00 46.22 4.63
6132 6496 4.820716 GTCATAGTGACATACTACCTCCGT 59.179 45.833 5.28 0.00 46.22 4.69
6133 6497 5.049543 GTCATAGTGACATACTACCTCCGTC 60.050 48.000 5.28 0.00 46.22 4.79
6134 6498 2.652590 AGTGACATACTACCTCCGTCC 58.347 52.381 0.00 0.00 38.04 4.79
6135 6499 2.241685 AGTGACATACTACCTCCGTCCT 59.758 50.000 0.00 0.00 38.04 3.85
6136 6500 2.358267 GTGACATACTACCTCCGTCCTG 59.642 54.545 0.00 0.00 0.00 3.86
6137 6501 1.955080 GACATACTACCTCCGTCCTGG 59.045 57.143 0.00 0.00 40.09 4.45
6138 6502 1.287146 ACATACTACCTCCGTCCTGGT 59.713 52.381 0.00 0.00 39.52 4.00
6139 6503 2.292061 ACATACTACCTCCGTCCTGGTT 60.292 50.000 0.00 0.00 39.52 3.67
6140 6504 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
6141 6505 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
6142 6506 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
6143 6507 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
6144 6508 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
6145 6509 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
6146 6510 1.280998 CCTCCGTCCTGGTTTATTGGT 59.719 52.381 0.00 0.00 39.52 3.67
6147 6511 2.629051 CTCCGTCCTGGTTTATTGGTC 58.371 52.381 0.00 0.00 39.52 4.02
6148 6512 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
6149 6513 1.680860 CCGTCCTGGTTTATTGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
6150 6514 1.680860 CGTCCTGGTTTATTGGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
6151 6515 1.639108 GTCCTGGTTTATTGGTCCCCT 59.361 52.381 0.00 0.00 0.00 4.79
6152 6516 2.042569 GTCCTGGTTTATTGGTCCCCTT 59.957 50.000 0.00 0.00 0.00 3.95
6153 6517 3.267551 GTCCTGGTTTATTGGTCCCCTTA 59.732 47.826 0.00 0.00 0.00 2.69
6154 6518 3.526019 TCCTGGTTTATTGGTCCCCTTAG 59.474 47.826 0.00 0.00 0.00 2.18
6155 6519 3.268595 CCTGGTTTATTGGTCCCCTTAGT 59.731 47.826 0.00 0.00 0.00 2.24
6156 6520 4.475747 CCTGGTTTATTGGTCCCCTTAGTA 59.524 45.833 0.00 0.00 0.00 1.82
6157 6521 5.133830 CCTGGTTTATTGGTCCCCTTAGTAT 59.866 44.000 0.00 0.00 0.00 2.12
6158 6522 6.354477 CCTGGTTTATTGGTCCCCTTAGTATT 60.354 42.308 0.00 0.00 0.00 1.89
6159 6523 7.046891 TGGTTTATTGGTCCCCTTAGTATTT 57.953 36.000 0.00 0.00 0.00 1.40
6160 6524 7.480437 TGGTTTATTGGTCCCCTTAGTATTTT 58.520 34.615 0.00 0.00 0.00 1.82
6161 6525 7.397761 TGGTTTATTGGTCCCCTTAGTATTTTG 59.602 37.037 0.00 0.00 0.00 2.44
6162 6526 7.398047 GGTTTATTGGTCCCCTTAGTATTTTGT 59.602 37.037 0.00 0.00 0.00 2.83
6163 6527 7.948034 TTATTGGTCCCCTTAGTATTTTGTG 57.052 36.000 0.00 0.00 0.00 3.33
6164 6528 3.692690 TGGTCCCCTTAGTATTTTGTGC 58.307 45.455 0.00 0.00 0.00 4.57
6165 6529 3.021695 GGTCCCCTTAGTATTTTGTGCC 58.978 50.000 0.00 0.00 0.00 5.01
6166 6530 3.562609 GGTCCCCTTAGTATTTTGTGCCA 60.563 47.826 0.00 0.00 0.00 4.92
6167 6531 4.083565 GTCCCCTTAGTATTTTGTGCCAA 58.916 43.478 0.00 0.00 0.00 4.52
6168 6532 4.525100 GTCCCCTTAGTATTTTGTGCCAAA 59.475 41.667 0.00 0.00 0.00 3.28
6169 6533 4.525100 TCCCCTTAGTATTTTGTGCCAAAC 59.475 41.667 0.52 0.00 0.00 2.93
6170 6534 4.526650 CCCCTTAGTATTTTGTGCCAAACT 59.473 41.667 0.52 0.00 0.00 2.66
6171 6535 5.011635 CCCCTTAGTATTTTGTGCCAAACTT 59.988 40.000 0.52 0.00 0.00 2.66
6172 6536 6.463755 CCCCTTAGTATTTTGTGCCAAACTTT 60.464 38.462 0.52 0.00 0.00 2.66
6173 6537 6.423604 CCCTTAGTATTTTGTGCCAAACTTTG 59.576 38.462 0.52 0.00 0.00 2.77
6174 6538 7.206687 CCTTAGTATTTTGTGCCAAACTTTGA 58.793 34.615 2.87 0.00 0.00 2.69
6175 6539 7.169140 CCTTAGTATTTTGTGCCAAACTTTGAC 59.831 37.037 2.87 0.00 0.00 3.18
6176 6540 5.356426 AGTATTTTGTGCCAAACTTTGACC 58.644 37.500 2.87 0.00 0.00 4.02
6177 6541 3.685139 TTTTGTGCCAAACTTTGACCA 57.315 38.095 2.87 0.00 0.00 4.02
6178 6542 3.902881 TTTGTGCCAAACTTTGACCAT 57.097 38.095 2.87 0.00 0.00 3.55
6179 6543 5.344743 TTTTGTGCCAAACTTTGACCATA 57.655 34.783 2.87 0.00 0.00 2.74
6180 6544 4.582701 TTGTGCCAAACTTTGACCATAG 57.417 40.909 2.87 0.00 0.00 2.23
6181 6545 3.826524 TGTGCCAAACTTTGACCATAGA 58.173 40.909 2.87 0.00 0.00 1.98
6182 6546 4.406456 TGTGCCAAACTTTGACCATAGAT 58.594 39.130 2.87 0.00 0.00 1.98
6183 6547 4.832266 TGTGCCAAACTTTGACCATAGATT 59.168 37.500 2.87 0.00 0.00 2.40
6184 6548 5.304101 TGTGCCAAACTTTGACCATAGATTT 59.696 36.000 2.87 0.00 0.00 2.17
6185 6549 6.491745 TGTGCCAAACTTTGACCATAGATTTA 59.508 34.615 2.87 0.00 0.00 1.40
6186 6550 7.014711 TGTGCCAAACTTTGACCATAGATTTAA 59.985 33.333 2.87 0.00 0.00 1.52
6187 6551 7.328493 GTGCCAAACTTTGACCATAGATTTAAC 59.672 37.037 2.87 0.00 0.00 2.01
6188 6552 7.232534 TGCCAAACTTTGACCATAGATTTAACT 59.767 33.333 2.87 0.00 0.00 2.24
6189 6553 8.736244 GCCAAACTTTGACCATAGATTTAACTA 58.264 33.333 2.87 0.00 0.00 2.24
6228 6592 9.715123 TGCATGTCACTAAAAATTATATCGTTG 57.285 29.630 0.00 0.00 0.00 4.10
6229 6593 9.169468 GCATGTCACTAAAAATTATATCGTTGG 57.831 33.333 0.00 0.00 0.00 3.77
6248 6612 8.330466 TCGTTGGATTTGTATTTGAATGTAGT 57.670 30.769 0.00 0.00 0.00 2.73
6249 6613 8.788806 TCGTTGGATTTGTATTTGAATGTAGTT 58.211 29.630 0.00 0.00 0.00 2.24
6250 6614 9.405587 CGTTGGATTTGTATTTGAATGTAGTTT 57.594 29.630 0.00 0.00 0.00 2.66
6325 6689 9.474920 TCTAAGGTCAAAATTTAGCACAAAATG 57.525 29.630 0.00 0.00 0.00 2.32
6333 6697 4.576993 GCACAAAATGCGAAGGGG 57.423 55.556 0.00 0.00 46.55 4.79
6334 6698 1.963679 GCACAAAATGCGAAGGGGA 59.036 52.632 0.00 0.00 46.55 4.81
6335 6699 0.388520 GCACAAAATGCGAAGGGGAC 60.389 55.000 0.00 0.00 46.55 4.46
6351 6715 3.189618 GGGACCAATAAACTAGGACGG 57.810 52.381 0.00 0.00 0.00 4.79
6352 6716 2.767960 GGGACCAATAAACTAGGACGGA 59.232 50.000 0.00 0.00 0.00 4.69
6353 6717 3.181468 GGGACCAATAAACTAGGACGGAG 60.181 52.174 0.00 0.00 0.00 4.63
6354 6718 3.181468 GGACCAATAAACTAGGACGGAGG 60.181 52.174 0.00 0.00 0.00 4.30
6355 6719 3.447950 ACCAATAAACTAGGACGGAGGT 58.552 45.455 0.00 0.00 0.00 3.85
6356 6720 4.613437 ACCAATAAACTAGGACGGAGGTA 58.387 43.478 0.00 0.00 0.00 3.08
6357 6721 4.648307 ACCAATAAACTAGGACGGAGGTAG 59.352 45.833 0.00 0.00 0.00 3.18
6358 6722 4.648307 CCAATAAACTAGGACGGAGGTAGT 59.352 45.833 0.00 0.00 0.00 2.73
6527 6891 7.218204 GCCTTTTATGAATACTTTGCGTGTAAG 59.782 37.037 0.00 0.00 0.00 2.34
6533 6897 6.655062 TGAATACTTTGCGTGTAAGTTCAAG 58.345 36.000 4.70 0.00 37.12 3.02
6693 7058 1.520787 GAGGTGGTTATGACCCGCG 60.521 63.158 3.88 0.00 45.92 6.46
6758 7123 3.307339 GCCCAACAAATTAAGGGAATGCA 60.307 43.478 0.00 0.00 44.30 3.96
6761 7126 5.186797 CCCAACAAATTAAGGGAATGCAGTA 59.813 40.000 0.00 0.00 44.30 2.74
6815 7181 6.647212 TGTTTATTCTGCGTGAGATAACAG 57.353 37.500 0.00 0.00 29.98 3.16
6828 7194 6.457392 CGTGAGATAACAGCAAATGCATTACT 60.457 38.462 13.39 10.63 45.16 2.24
6837 7206 6.429692 ACAGCAAATGCATTACTGTGTTACTA 59.570 34.615 31.72 0.00 45.16 1.82
7017 7387 3.324556 ACTTTGGTATGTGGCAATGCTTT 59.675 39.130 4.82 0.00 0.00 3.51
7041 7411 6.721571 TGATAACTTAAGCTTGGAAACTCG 57.278 37.500 9.86 0.00 0.00 4.18
7303 7673 3.571401 GCTGCAGCCAGGATTATACAAAT 59.429 43.478 28.76 0.00 39.54 2.32
7363 7734 3.525199 AGATTTGTGGAAGGATGCTACCT 59.475 43.478 0.00 0.00 42.69 3.08
7366 7737 2.827755 TGTGGAAGGATGCTACCTGTA 58.172 47.619 3.26 0.00 40.49 2.74
7400 7771 1.873698 TTTGCGAAGTCAGGTACACC 58.126 50.000 0.00 0.00 0.00 4.16
7444 7815 3.134127 GTGGCGAACTGGATGGCC 61.134 66.667 0.00 0.00 43.77 5.36
7485 7861 2.208326 CATTTGACTAAATGGGCGCC 57.792 50.000 21.18 21.18 45.99 6.53
7486 7862 1.750778 CATTTGACTAAATGGGCGCCT 59.249 47.619 28.56 9.11 45.99 5.52
7487 7863 1.917872 TTTGACTAAATGGGCGCCTT 58.082 45.000 28.56 15.89 0.00 4.35
7488 7864 1.459450 TTGACTAAATGGGCGCCTTC 58.541 50.000 28.56 11.61 0.00 3.46
7489 7865 0.393808 TGACTAAATGGGCGCCTTCC 60.394 55.000 28.56 10.74 0.00 3.46
7554 7930 3.573538 TGTTGCCTGCAGATGTTATGTTT 59.426 39.130 17.39 0.00 0.00 2.83
7573 7949 0.392461 TCCTTCGGTATTGCTGGCAC 60.392 55.000 0.00 0.00 0.00 5.01
7576 7987 2.828549 CGGTATTGCTGGCACCCC 60.829 66.667 0.00 0.00 0.00 4.95
7578 7989 1.919771 GGTATTGCTGGCACCCCTA 59.080 57.895 0.00 0.00 0.00 3.53
7593 8004 2.628106 CTACATCGGCATGTGCGC 59.372 61.111 0.00 0.00 43.54 6.09
7599 8010 2.257286 ATCGGCATGTGCGCTGTTTC 62.257 55.000 9.73 0.00 43.26 2.78
7677 8090 7.439157 TGCTTATCCAAGTTGTCATATATGC 57.561 36.000 7.92 4.27 34.00 3.14
7755 8168 6.854892 GCTGTCATATATGAACATTTCTGCAC 59.145 38.462 16.97 1.90 38.75 4.57
7771 8184 5.086104 TCTGCACTTTGTATAGGTCCTTC 57.914 43.478 0.00 0.00 0.00 3.46
7780 8193 2.249309 ATAGGTCCTTCGGAGGTTGT 57.751 50.000 10.32 0.00 43.97 3.32
7796 8209 1.070776 GTTGTGGAAAAGCGACGAGAC 60.071 52.381 0.00 0.00 0.00 3.36
7822 8235 7.573096 CGTCAGTTGCAGTTCCTTGTTTATTAT 60.573 37.037 0.00 0.00 0.00 1.28
7863 8276 7.873719 TTTGTCTTAACCAAATGAGTTGAGA 57.126 32.000 0.00 0.00 39.87 3.27
7929 8351 2.835431 CGATCCAGACGGGCCTCT 60.835 66.667 0.84 0.24 36.21 3.69
7948 8370 3.093814 TCTAGTATTGCGGAGTGGTTGA 58.906 45.455 0.00 0.00 0.00 3.18
7949 8371 2.851263 AGTATTGCGGAGTGGTTGAA 57.149 45.000 0.00 0.00 0.00 2.69
7950 8372 2.699954 AGTATTGCGGAGTGGTTGAAG 58.300 47.619 0.00 0.00 0.00 3.02
7951 8373 2.301870 AGTATTGCGGAGTGGTTGAAGA 59.698 45.455 0.00 0.00 0.00 2.87
7952 8374 2.270352 ATTGCGGAGTGGTTGAAGAA 57.730 45.000 0.00 0.00 0.00 2.52
7989 8415 1.144093 CACCCCTACCCACTTTCAACA 59.856 52.381 0.00 0.00 0.00 3.33
8020 8446 8.408601 CCTAGTTCATGACCATTAAAAATGGAG 58.591 37.037 22.29 10.69 41.64 3.86
8023 8449 7.123247 AGTTCATGACCATTAAAAATGGAGAGG 59.877 37.037 22.29 11.21 41.64 3.69
8025 8451 4.671831 TGACCATTAAAAATGGAGAGGCA 58.328 39.130 22.29 10.59 41.64 4.75
8036 8462 3.140325 TGGAGAGGCAAAGTAACAAGG 57.860 47.619 0.00 0.00 0.00 3.61
8039 8465 3.753797 GGAGAGGCAAAGTAACAAGGAAG 59.246 47.826 0.00 0.00 0.00 3.46
8046 8472 0.321653 AGTAACAAGGAAGCTGGCCG 60.322 55.000 0.00 0.00 0.00 6.13
8249 8684 2.806244 GCTACGAGCAGAAGAACCAAAA 59.194 45.455 0.00 0.00 41.89 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.364515 GACACCACGACGCGATAAAC 59.635 55.000 15.93 0.00 0.00 2.01
1 2 1.066656 CGACACCACGACGCGATAAA 61.067 55.000 15.93 0.00 35.09 1.40
2 3 1.512522 CGACACCACGACGCGATAA 60.513 57.895 15.93 0.00 35.09 1.75
3 4 2.098871 CGACACCACGACGCGATA 59.901 61.111 15.93 0.00 35.09 2.92
4 5 4.771356 CCGACACCACGACGCGAT 62.771 66.667 15.93 0.00 35.09 4.58
15 16 4.176752 GATCCCAGGCCCCGACAC 62.177 72.222 0.00 0.00 0.00 3.67
16 17 4.414956 AGATCCCAGGCCCCGACA 62.415 66.667 0.00 0.00 0.00 4.35
17 18 3.551407 GAGATCCCAGGCCCCGAC 61.551 72.222 0.00 0.00 0.00 4.79
20 21 3.866582 CACGAGATCCCAGGCCCC 61.867 72.222 0.00 0.00 0.00 5.80
21 22 4.554036 GCACGAGATCCCAGGCCC 62.554 72.222 0.00 0.00 0.00 5.80
22 23 3.474570 AGCACGAGATCCCAGGCC 61.475 66.667 0.00 0.00 0.00 5.19
23 24 2.202987 CAGCACGAGATCCCAGGC 60.203 66.667 0.00 0.00 0.00 4.85
24 25 0.036010 AAACAGCACGAGATCCCAGG 60.036 55.000 0.00 0.00 0.00 4.45
25 26 1.363744 GAAACAGCACGAGATCCCAG 58.636 55.000 0.00 0.00 0.00 4.45
56 57 3.514362 GCATAACCAACCCGGCCG 61.514 66.667 21.04 21.04 39.03 6.13
59 60 3.514362 GGCGCATAACCAACCCGG 61.514 66.667 10.83 0.00 42.50 5.73
61 62 1.381165 AATCGGCGCATAACCAACCC 61.381 55.000 10.83 0.00 0.00 4.11
95 96 1.809619 ATCGGTGGATGAACACGCG 60.810 57.895 3.53 3.53 42.23 6.01
108 109 1.227999 CGCTGTCCACAAACATCGGT 61.228 55.000 0.00 0.00 35.69 4.69
109 110 1.497278 CGCTGTCCACAAACATCGG 59.503 57.895 0.00 0.00 35.69 4.18
110 111 1.227999 ACCGCTGTCCACAAACATCG 61.228 55.000 0.00 0.00 38.23 3.84
111 112 0.951558 AACCGCTGTCCACAAACATC 59.048 50.000 0.00 0.00 0.00 3.06
112 113 1.066908 CAAACCGCTGTCCACAAACAT 59.933 47.619 0.00 0.00 0.00 2.71
113 114 0.453793 CAAACCGCTGTCCACAAACA 59.546 50.000 0.00 0.00 0.00 2.83
114 115 0.248866 CCAAACCGCTGTCCACAAAC 60.249 55.000 0.00 0.00 0.00 2.93
115 116 1.388065 CCCAAACCGCTGTCCACAAA 61.388 55.000 0.00 0.00 0.00 2.83
116 117 1.826054 CCCAAACCGCTGTCCACAA 60.826 57.895 0.00 0.00 0.00 3.33
117 118 2.203280 CCCAAACCGCTGTCCACA 60.203 61.111 0.00 0.00 0.00 4.17
118 119 2.983592 CCCCAAACCGCTGTCCAC 60.984 66.667 0.00 0.00 0.00 4.02
119 120 4.278513 CCCCCAAACCGCTGTCCA 62.279 66.667 0.00 0.00 0.00 4.02
128 129 4.280019 ACCTCACCGCCCCCAAAC 62.280 66.667 0.00 0.00 0.00 2.93
129 130 4.278513 CACCTCACCGCCCCCAAA 62.279 66.667 0.00 0.00 0.00 3.28
136 137 3.887335 TAAACCCGCACCTCACCGC 62.887 63.158 0.00 0.00 0.00 5.68
137 138 0.675522 AATAAACCCGCACCTCACCG 60.676 55.000 0.00 0.00 0.00 4.94
167 198 1.007842 AGGCAAACCCCCGGATTAATT 59.992 47.619 0.73 0.00 36.11 1.40
185 216 0.526524 GGTTGAGATCTCACGCGAGG 60.527 60.000 25.07 4.29 39.66 4.63
214 249 1.213537 GCCATGTGCGCACTCAAAT 59.786 52.632 37.59 22.12 0.00 2.32
231 266 0.583438 CACATATGCACGGTGCTAGC 59.417 55.000 30.81 8.10 45.31 3.42
251 296 3.669122 GCAGTACTAATCCGCGTAATCAG 59.331 47.826 4.92 0.00 0.00 2.90
257 302 1.683943 TAGGCAGTACTAATCCGCGT 58.316 50.000 4.92 0.00 0.00 6.01
273 318 2.480759 GCATGGCAAAGCTGTCATTAGG 60.481 50.000 7.90 0.00 45.83 2.69
313 358 1.674322 CGGGGCCAAACACCAGTAG 60.674 63.158 4.39 0.00 0.00 2.57
322 367 0.969894 CAATAAACCACGGGGCCAAA 59.030 50.000 1.73 0.00 37.90 3.28
371 420 3.055385 TGGGCAAATAGTACCTGACTGAC 60.055 47.826 0.00 0.00 39.39 3.51
414 463 2.821366 AGAAATGCTCTGCCCGCG 60.821 61.111 0.00 0.00 31.12 6.46
430 479 2.355132 GACAATCAGAAGCAGCATCCAG 59.645 50.000 0.00 0.00 0.00 3.86
450 499 0.452784 CGAGATATGCACGCGATCGA 60.453 55.000 21.57 0.00 39.41 3.59
468 517 1.069091 TGTTGTGCATGATGAACTGCG 60.069 47.619 4.97 0.00 41.32 5.18
492 541 3.878778 AGAAGAGTGCACAGTGAAAAGT 58.121 40.909 21.04 0.00 0.00 2.66
619 677 2.031314 CAGCAACTCATACGAATGCAGG 59.969 50.000 0.00 0.00 36.81 4.85
620 678 2.931969 TCAGCAACTCATACGAATGCAG 59.068 45.455 0.00 0.00 36.81 4.41
621 679 2.971307 TCAGCAACTCATACGAATGCA 58.029 42.857 0.00 0.00 36.81 3.96
622 680 4.277258 CAATCAGCAACTCATACGAATGC 58.723 43.478 0.00 0.00 35.35 3.56
623 681 4.333649 ACCAATCAGCAACTCATACGAATG 59.666 41.667 0.00 0.00 0.00 2.67
624 682 4.517285 ACCAATCAGCAACTCATACGAAT 58.483 39.130 0.00 0.00 0.00 3.34
625 683 3.937814 ACCAATCAGCAACTCATACGAA 58.062 40.909 0.00 0.00 0.00 3.85
626 684 3.610040 ACCAATCAGCAACTCATACGA 57.390 42.857 0.00 0.00 0.00 3.43
627 685 4.433615 AGTACCAATCAGCAACTCATACG 58.566 43.478 0.00 0.00 0.00 3.06
628 686 6.258068 GGTTAGTACCAATCAGCAACTCATAC 59.742 42.308 0.00 0.00 44.36 2.39
716 803 8.175925 TGTCAAAATGGAATGAACTGTTATGA 57.824 30.769 0.00 0.00 0.00 2.15
736 823 3.485394 ACCAGCACAACACATATGTCAA 58.515 40.909 5.07 0.00 38.45 3.18
753 840 7.219322 TGGATTTGTCATATGTCATAGACCAG 58.781 38.462 3.45 0.00 0.00 4.00
759 846 8.467963 AATGCTTGGATTTGTCATATGTCATA 57.532 30.769 3.45 0.00 0.00 2.15
760 847 6.971726 ATGCTTGGATTTGTCATATGTCAT 57.028 33.333 3.45 0.00 0.00 3.06
761 848 6.183360 GGAATGCTTGGATTTGTCATATGTCA 60.183 38.462 1.90 0.00 0.00 3.58
776 863 0.609957 TGCAGTGAGGGAATGCTTGG 60.610 55.000 0.00 0.00 40.62 3.61
778 865 1.005097 TCATGCAGTGAGGGAATGCTT 59.995 47.619 0.00 0.00 40.62 3.91
821 908 5.947228 ATCAAAGACATGTGGTACAGTTG 57.053 39.130 1.15 0.00 41.80 3.16
822 909 8.103305 AGAATATCAAAGACATGTGGTACAGTT 58.897 33.333 1.15 0.00 41.80 3.16
828 915 6.319048 AGGAGAATATCAAAGACATGTGGT 57.681 37.500 1.15 0.00 0.00 4.16
854 941 8.508875 GGATATTCTTCGGTTAACAAGTCAAAA 58.491 33.333 8.10 0.00 0.00 2.44
869 956 9.956720 AAATAAAATTCTGCTGGATATTCTTCG 57.043 29.630 0.00 0.00 0.00 3.79
918 1005 7.594714 TGCAAGAAACTGTAAACTTGTAAACA 58.405 30.769 16.60 8.29 40.88 2.83
962 1049 6.089954 GCTTACCAATCTGCAAAAATTGTCTC 59.910 38.462 12.52 0.00 32.20 3.36
965 1052 5.857268 AGCTTACCAATCTGCAAAAATTGT 58.143 33.333 12.52 6.17 32.20 2.71
967 1054 6.427853 GGAAAGCTTACCAATCTGCAAAAATT 59.572 34.615 0.00 0.00 0.00 1.82
993 1080 1.825191 CCCATCCTCCATGTTGCGG 60.825 63.158 0.00 0.00 0.00 5.69
997 1084 1.285962 CTTGTCCCCATCCTCCATGTT 59.714 52.381 0.00 0.00 0.00 2.71
1204 1393 4.044308 TGGATCTGCCCTTTTACCTCATA 58.956 43.478 0.00 0.00 34.97 2.15
1294 1483 6.322712 ACAGTCTGGTCTGAATCTATAGGTTC 59.677 42.308 17.41 17.41 38.63 3.62
1413 1602 4.791974 CTTTTGAATCAAGCTCCACAGAC 58.208 43.478 0.00 0.00 0.00 3.51
1575 1764 4.701651 CCACTTGCTGAACCATCATTCTTA 59.298 41.667 0.00 0.00 34.37 2.10
1606 1795 7.487822 TTCCATAATCTGAGACAGTCTTCTT 57.512 36.000 4.05 0.00 32.61 2.52
1614 1803 9.527157 TTTGGTTTAATTCCATAATCTGAGACA 57.473 29.630 0.00 0.00 34.75 3.41
1625 1814 7.947890 TCTGTACCTCTTTTGGTTTAATTCCAT 59.052 33.333 0.00 0.00 41.22 3.41
1628 1817 9.063615 TCTTCTGTACCTCTTTTGGTTTAATTC 57.936 33.333 0.00 0.00 41.22 2.17
1742 1931 1.686052 TCAAACCAGGCACATTTCCAC 59.314 47.619 0.00 0.00 0.00 4.02
1745 1934 2.622942 TCTGTCAAACCAGGCACATTTC 59.377 45.455 0.00 0.00 33.14 2.17
1828 2017 1.393603 TGCATGAACAACCGAACCAA 58.606 45.000 0.00 0.00 0.00 3.67
2082 2271 3.806521 CACATCCAGATTCGTCATCTTCC 59.193 47.826 0.00 0.00 40.67 3.46
2159 2348 9.581289 TTCTCATTTTGTAAAACCTATCCTTCA 57.419 29.630 0.00 0.00 0.00 3.02
2625 2815 4.746466 ACCTCCAAATATTCCAACCAACA 58.254 39.130 0.00 0.00 0.00 3.33
3181 3493 2.754552 GCATTAGGGCAATCAAGACACA 59.245 45.455 0.00 0.00 0.00 3.72
3182 3494 2.099756 GGCATTAGGGCAATCAAGACAC 59.900 50.000 0.00 0.00 42.77 3.67
3522 3834 5.576563 TCACCTTGGATCTTTGGTCTTTA 57.423 39.130 0.00 0.00 0.00 1.85
3585 3897 7.990886 TGACAGGACAGATTTTTAGTAAACAGT 59.009 33.333 0.00 0.00 0.00 3.55
3697 4011 2.149973 TAAGGAACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
3706 4020 7.707893 CGAAAAGGTCTTATATTAAGGAACGGA 59.292 37.037 0.00 0.00 0.00 4.69
3731 4045 7.919313 ATGCAGTCAATATTTTGAAATAGCG 57.081 32.000 0.00 0.00 43.29 4.26
3831 4146 9.145442 ACTTATATTTAGGAACAGAGGGAGTAC 57.855 37.037 0.00 0.00 0.00 2.73
3834 4149 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
3836 4151 9.549078 GAAAGACTTATATTTAGGAACAGAGGG 57.451 37.037 0.00 0.00 0.00 4.30
3864 4179 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
3865 4180 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
3866 4181 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
3867 4182 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
3868 4183 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
3869 4184 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
3870 4185 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
3871 4186 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
3887 4202 9.149225 CTCTAAACTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
3888 4203 9.149225 ACTCTAAACTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 0.00 4.18
3897 4212 9.610705 TGAATCTACACTCTAAACTACGTCTAT 57.389 33.333 0.00 0.00 0.00 1.98
3898 4213 8.877779 GTGAATCTACACTCTAAACTACGTCTA 58.122 37.037 0.00 0.00 37.73 2.59
3899 4214 7.607223 AGTGAATCTACACTCTAAACTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
3900 4215 7.750769 AGTGAATCTACACTCTAAACTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
3901 4216 7.684937 AGTGAATCTACACTCTAAACTACGT 57.315 36.000 0.00 0.00 46.36 3.57
3913 4228 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
3914 4229 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
3915 4230 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
3916 4231 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
3917 4232 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
3918 4233 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
3919 4234 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
3920 4235 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
3921 4236 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
3922 4237 6.765036 AGACTACATATGGAGCAAAATGAGTG 59.235 38.462 15.30 0.00 0.00 3.51
3923 4238 6.893583 AGACTACATATGGAGCAAAATGAGT 58.106 36.000 15.30 0.00 0.00 3.41
3928 4243 9.725019 CCAATATAGACTACATATGGAGCAAAA 57.275 33.333 15.30 0.00 0.00 2.44
3929 4244 9.100197 TCCAATATAGACTACATATGGAGCAAA 57.900 33.333 15.30 0.50 0.00 3.68
3930 4245 8.664669 TCCAATATAGACTACATATGGAGCAA 57.335 34.615 15.30 0.88 0.00 3.91
3931 4246 8.664669 TTCCAATATAGACTACATATGGAGCA 57.335 34.615 15.30 0.87 0.00 4.26
3932 4247 9.757227 GATTCCAATATAGACTACATATGGAGC 57.243 37.037 15.30 7.96 0.00 4.70
3959 4274 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
3960 4275 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
3961 4276 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3962 4277 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3963 4278 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3964 4279 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3965 4280 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3966 4281 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3967 4282 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3968 4283 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
3969 4284 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
3970 4285 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
3971 4286 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
3972 4287 7.545489 CATATACTCCCTCCGTTCCTAAATAC 58.455 42.308 0.00 0.00 0.00 1.89
3973 4288 6.154021 GCATATACTCCCTCCGTTCCTAAATA 59.846 42.308 0.00 0.00 0.00 1.40
3974 4289 5.046520 GCATATACTCCCTCCGTTCCTAAAT 60.047 44.000 0.00 0.00 0.00 1.40
3975 4290 4.282703 GCATATACTCCCTCCGTTCCTAAA 59.717 45.833 0.00 0.00 0.00 1.85
3976 4291 3.830755 GCATATACTCCCTCCGTTCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
3977 4292 3.181426 TGCATATACTCCCTCCGTTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
3978 4293 2.249139 GCATATACTCCCTCCGTTCCT 58.751 52.381 0.00 0.00 0.00 3.36
4346 4661 7.496747 AGTTTCAATCATTTCTTCCGGAAAAA 58.503 30.769 19.39 19.61 45.56 1.94
4347 4662 7.049799 AGTTTCAATCATTTCTTCCGGAAAA 57.950 32.000 19.39 11.19 45.56 2.29
4348 4663 6.648879 AGTTTCAATCATTTCTTCCGGAAA 57.351 33.333 19.39 3.56 46.33 3.13
4349 4664 6.648879 AAGTTTCAATCATTTCTTCCGGAA 57.351 33.333 17.73 17.73 0.00 4.30
4350 4665 6.150474 GGTAAGTTTCAATCATTTCTTCCGGA 59.850 38.462 0.00 0.00 0.00 5.14
4351 4666 6.151144 AGGTAAGTTTCAATCATTTCTTCCGG 59.849 38.462 0.00 0.00 0.00 5.14
4352 4667 7.145932 AGGTAAGTTTCAATCATTTCTTCCG 57.854 36.000 0.00 0.00 0.00 4.30
4353 4668 9.232473 ACTAGGTAAGTTTCAATCATTTCTTCC 57.768 33.333 0.00 0.00 33.35 3.46
4358 4673 9.367444 CGAGTACTAGGTAAGTTTCAATCATTT 57.633 33.333 0.00 0.00 39.80 2.32
4359 4674 8.529476 ACGAGTACTAGGTAAGTTTCAATCATT 58.471 33.333 7.94 0.00 39.80 2.57
4360 4675 8.064336 ACGAGTACTAGGTAAGTTTCAATCAT 57.936 34.615 7.94 0.00 39.80 2.45
4361 4676 7.458409 ACGAGTACTAGGTAAGTTTCAATCA 57.542 36.000 7.94 0.00 39.80 2.57
4362 4677 9.448294 CATACGAGTACTAGGTAAGTTTCAATC 57.552 37.037 7.94 0.00 39.80 2.67
4363 4678 8.964772 ACATACGAGTACTAGGTAAGTTTCAAT 58.035 33.333 7.94 0.00 39.80 2.57
4364 4679 8.340618 ACATACGAGTACTAGGTAAGTTTCAA 57.659 34.615 7.94 0.00 39.80 2.69
4365 4680 7.928307 ACATACGAGTACTAGGTAAGTTTCA 57.072 36.000 7.94 0.00 39.80 2.69
4366 4681 8.555361 CCTACATACGAGTACTAGGTAAGTTTC 58.445 40.741 15.39 0.00 39.80 2.78
4367 4682 7.012799 GCCTACATACGAGTACTAGGTAAGTTT 59.987 40.741 15.39 3.81 39.80 2.66
4368 4683 6.484977 GCCTACATACGAGTACTAGGTAAGTT 59.515 42.308 15.39 5.54 39.80 2.66
4369 4684 5.994668 GCCTACATACGAGTACTAGGTAAGT 59.005 44.000 14.85 14.85 42.62 2.24
4370 4685 5.411053 GGCCTACATACGAGTACTAGGTAAG 59.589 48.000 7.94 7.43 0.00 2.34
4371 4686 5.072329 AGGCCTACATACGAGTACTAGGTAA 59.928 44.000 1.29 0.00 0.00 2.85
4372 4687 4.594920 AGGCCTACATACGAGTACTAGGTA 59.405 45.833 1.29 8.14 0.00 3.08
4373 4688 3.393941 AGGCCTACATACGAGTACTAGGT 59.606 47.826 1.29 6.16 0.00 3.08
4374 4689 4.018484 AGGCCTACATACGAGTACTAGG 57.982 50.000 1.29 4.70 0.00 3.02
4375 4690 5.177326 CCTAGGCCTACATACGAGTACTAG 58.823 50.000 8.91 0.00 0.00 2.57
4376 4691 4.019860 CCCTAGGCCTACATACGAGTACTA 60.020 50.000 8.91 0.00 0.00 1.82
4377 4692 3.244840 CCCTAGGCCTACATACGAGTACT 60.245 52.174 8.91 0.00 0.00 2.73
4378 4693 3.080319 CCCTAGGCCTACATACGAGTAC 58.920 54.545 8.91 0.00 0.00 2.73
4379 4694 2.553904 GCCCTAGGCCTACATACGAGTA 60.554 54.545 8.91 0.00 44.06 2.59
4380 4695 1.822457 GCCCTAGGCCTACATACGAGT 60.822 57.143 8.91 0.00 44.06 4.18
4381 4696 0.889306 GCCCTAGGCCTACATACGAG 59.111 60.000 8.91 0.00 44.06 4.18
4382 4697 3.047039 GCCCTAGGCCTACATACGA 57.953 57.895 8.91 0.00 44.06 3.43
4392 4707 1.540580 GGAACTGATTACGCCCTAGGC 60.541 57.143 2.05 0.00 46.75 3.93
4393 4708 1.070289 GGGAACTGATTACGCCCTAGG 59.930 57.143 0.06 0.06 35.86 3.02
4394 4709 1.269621 CGGGAACTGATTACGCCCTAG 60.270 57.143 0.00 0.00 36.31 3.02
4395 4710 0.748450 CGGGAACTGATTACGCCCTA 59.252 55.000 0.00 0.00 36.31 3.53
4396 4711 1.520666 CGGGAACTGATTACGCCCT 59.479 57.895 0.00 0.00 36.31 5.19
4397 4712 1.523032 CCGGGAACTGATTACGCCC 60.523 63.158 0.00 0.00 36.31 6.13
4398 4713 0.108041 TTCCGGGAACTGATTACGCC 60.108 55.000 5.09 0.00 36.31 5.68
4399 4714 1.729284 TTTCCGGGAACTGATTACGC 58.271 50.000 9.46 0.00 36.31 4.42
4400 4715 3.555956 CAGATTTCCGGGAACTGATTACG 59.444 47.826 17.99 0.00 36.31 3.18
4401 4716 4.766375 TCAGATTTCCGGGAACTGATTAC 58.234 43.478 20.31 1.51 36.31 1.89
4402 4717 4.469945 ACTCAGATTTCCGGGAACTGATTA 59.530 41.667 22.91 5.05 37.07 1.75
4403 4718 3.264450 ACTCAGATTTCCGGGAACTGATT 59.736 43.478 22.91 17.41 37.07 2.57
4404 4719 2.840651 ACTCAGATTTCCGGGAACTGAT 59.159 45.455 22.91 10.48 37.07 2.90
4405 4720 2.257207 ACTCAGATTTCCGGGAACTGA 58.743 47.619 21.89 21.89 36.31 3.41
4406 4721 2.770164 ACTCAGATTTCCGGGAACTG 57.230 50.000 17.14 17.14 0.00 3.16
4407 4722 3.442076 AGTACTCAGATTTCCGGGAACT 58.558 45.455 9.46 3.74 0.00 3.01
4408 4723 3.889520 AGTACTCAGATTTCCGGGAAC 57.110 47.619 9.46 0.00 0.00 3.62
4409 4724 5.455872 AGATAGTACTCAGATTTCCGGGAA 58.544 41.667 5.09 5.09 0.00 3.97
4410 4725 5.063017 AGATAGTACTCAGATTTCCGGGA 57.937 43.478 0.00 0.00 0.00 5.14
4411 4726 5.106078 GCTAGATAGTACTCAGATTTCCGGG 60.106 48.000 0.00 0.00 0.00 5.73
4412 4727 5.391097 CGCTAGATAGTACTCAGATTTCCGG 60.391 48.000 0.00 0.00 0.00 5.14
4413 4728 5.623335 CGCTAGATAGTACTCAGATTTCCG 58.377 45.833 0.00 0.00 0.00 4.30
4414 4729 5.048643 TGCGCTAGATAGTACTCAGATTTCC 60.049 44.000 9.73 0.00 0.00 3.13
4415 4730 6.003234 TGCGCTAGATAGTACTCAGATTTC 57.997 41.667 9.73 0.00 0.00 2.17
4416 4731 5.533154 ACTGCGCTAGATAGTACTCAGATTT 59.467 40.000 9.73 0.00 0.00 2.17
4417 4732 5.049060 CACTGCGCTAGATAGTACTCAGATT 60.049 44.000 9.73 0.00 0.00 2.40
4418 4733 4.454161 CACTGCGCTAGATAGTACTCAGAT 59.546 45.833 9.73 0.00 0.00 2.90
4419 4734 3.810386 CACTGCGCTAGATAGTACTCAGA 59.190 47.826 9.73 0.00 0.00 3.27
4420 4735 3.562141 ACACTGCGCTAGATAGTACTCAG 59.438 47.826 9.73 0.08 0.00 3.35
4427 4742 3.972950 AGTACACACTGCGCTAGATAG 57.027 47.619 9.73 0.00 32.25 2.08
4460 4775 8.421784 TGACTGGTATATGATGTAAAAGGACTC 58.578 37.037 0.00 0.00 0.00 3.36
4557 4887 0.889306 GCCCTAGGCCTACATACGAG 59.111 60.000 8.91 0.00 44.06 4.18
4558 4888 3.047039 GCCCTAGGCCTACATACGA 57.953 57.895 8.91 0.00 44.06 3.43
4597 4927 4.446311 GGCCTTGCCTTCTATATTCCTTCA 60.446 45.833 0.00 0.00 46.69 3.02
4650 4980 8.215050 TCTGACTTTCTACAACCATAGGAAAAA 58.785 33.333 0.00 0.00 0.00 1.94
4651 4981 7.741785 TCTGACTTTCTACAACCATAGGAAAA 58.258 34.615 0.00 0.00 0.00 2.29
4655 4989 7.331026 TCAATCTGACTTTCTACAACCATAGG 58.669 38.462 0.00 0.00 0.00 2.57
4739 5073 9.477484 CCAGTTTCTATATATAGTCGTTTTGCT 57.523 33.333 17.44 5.53 0.00 3.91
4789 5123 4.425180 TCCCAGTGCACTAAAACAAGTA 57.575 40.909 21.20 0.00 0.00 2.24
4801 5135 2.840038 ACAGTTATGAGATCCCAGTGCA 59.160 45.455 0.00 0.00 0.00 4.57
4813 5147 5.748670 TTGGCAAGTAGGTACAGTTATGA 57.251 39.130 0.00 0.00 0.00 2.15
4847 5181 1.281656 GCTAACGGTTGTGTGCACC 59.718 57.895 15.69 6.37 0.00 5.01
4848 5182 0.591170 ATGCTAACGGTTGTGTGCAC 59.409 50.000 10.75 10.75 39.04 4.57
4870 5204 6.087518 CGCTAATATTGTAGTGCTGCTATG 57.912 41.667 0.00 0.00 31.50 2.23
4892 5226 5.623335 TGGTGTTTTAAATAGAATGTCGCG 58.377 37.500 0.00 0.00 0.00 5.87
5010 5355 5.457148 CGAATTTTCTAGTCGACATCCAGAG 59.543 44.000 19.50 4.94 46.60 3.35
5051 5396 1.303398 TCCCTCGACTGCTCGACTT 60.303 57.895 0.00 0.00 44.14 3.01
5097 5442 2.609459 AGTCGAACAACTCAAAGTGCAG 59.391 45.455 0.00 0.00 0.00 4.41
5141 5489 0.761802 GCTCACTTATCCCCTCCCAG 59.238 60.000 0.00 0.00 0.00 4.45
5188 5536 9.753674 TGAGAAGTGGATAATACAAATTTTCCT 57.246 29.630 6.04 0.00 41.37 3.36
5259 5608 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5261 5610 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
5263 5612 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
5264 5613 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
5265 5614 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
5266 5615 5.682943 TTTGAGTCACTTATTTTGGGACG 57.317 39.130 0.00 0.00 33.84 4.79
5267 5616 6.918022 CACTTTTGAGTCACTTATTTTGGGAC 59.082 38.462 0.00 0.00 0.00 4.46
5268 5617 6.831353 TCACTTTTGAGTCACTTATTTTGGGA 59.169 34.615 0.00 0.00 0.00 4.37
5269 5618 7.038154 TCACTTTTGAGTCACTTATTTTGGG 57.962 36.000 0.00 0.00 0.00 4.12
5284 5633 8.780846 TTAGTACAAAGTTCACTCACTTTTGA 57.219 30.769 0.00 0.00 43.17 2.69
5328 5677 6.831353 TCCCAAAATAAGTGACTCAAAAGTGA 59.169 34.615 0.00 0.00 35.28 3.41
5329 5678 6.918022 GTCCCAAAATAAGTGACTCAAAAGTG 59.082 38.462 0.00 0.00 35.28 3.16
5330 5679 6.238648 CGTCCCAAAATAAGTGACTCAAAAGT 60.239 38.462 0.00 0.00 38.88 2.66
5331 5680 6.142817 CGTCCCAAAATAAGTGACTCAAAAG 58.857 40.000 0.00 0.00 0.00 2.27
5332 5681 5.009210 CCGTCCCAAAATAAGTGACTCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
5333 5682 4.517453 CCGTCCCAAAATAAGTGACTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
5334 5683 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5335 5684 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
5336 5685 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5337 5686 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
5338 5687 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
5339 5688 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
5340 5689 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5341 5690 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5342 5691 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5343 5692 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5344 5693 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5345 5694 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
5346 5695 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
5347 5696 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5348 5697 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
5349 5698 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
5350 5699 3.735720 ATATACTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
5351 5700 5.434182 AGTATATACTACTCCCTCCGTCC 57.566 47.826 13.88 0.00 34.13 4.79
5412 5761 4.628074 GACATGGTACTGTAACACACACT 58.372 43.478 7.87 0.00 32.33 3.55
5462 5811 7.015098 AGGTTGAGACTCATAGACTAATCATGG 59.985 40.741 5.87 0.00 0.00 3.66
5465 5814 7.147828 CCAAGGTTGAGACTCATAGACTAATCA 60.148 40.741 5.87 0.00 0.00 2.57
5592 5943 4.834406 AGAGGTTCAGGGTATGATAGGA 57.166 45.455 0.00 0.00 37.89 2.94
5660 6011 1.474332 TTTCCCGGCGAGTAACACCT 61.474 55.000 9.30 0.00 0.00 4.00
5752 6103 4.503741 TTTGCTTACAGATGCAACCTTC 57.496 40.909 0.00 0.00 46.91 3.46
5829 6180 4.445452 AGCAAGAACGGTAAATACTCGA 57.555 40.909 7.96 0.00 0.00 4.04
5830 6181 5.803967 ACTAAGCAAGAACGGTAAATACTCG 59.196 40.000 0.00 0.00 0.00 4.18
5869 6221 6.477253 TGTTATACTACAAATTCTGGTGCCA 58.523 36.000 0.00 0.00 0.00 4.92
5899 6251 7.436673 CCGGTAAATAGCTCTATTAGATGCATC 59.563 40.741 19.37 19.37 34.90 3.91
5992 6349 3.519510 TCAAGCAGCTCTAGGGTTGTAAT 59.480 43.478 8.38 0.00 41.76 1.89
6032 6389 5.010820 AGACCGAAAAAGCTAGAGTAACTGT 59.989 40.000 0.00 0.00 0.00 3.55
6033 6390 5.471257 AGACCGAAAAAGCTAGAGTAACTG 58.529 41.667 0.00 0.00 0.00 3.16
6034 6391 5.725325 AGACCGAAAAAGCTAGAGTAACT 57.275 39.130 0.00 0.00 0.00 2.24
6035 6392 5.695363 ACAAGACCGAAAAAGCTAGAGTAAC 59.305 40.000 0.00 0.00 0.00 2.50
6038 6395 4.338379 ACAAGACCGAAAAAGCTAGAGT 57.662 40.909 0.00 0.00 0.00 3.24
6083 6447 2.492025 AGGATAGCCCCAAATCAGACA 58.508 47.619 0.00 0.00 34.66 3.41
6122 6486 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
6123 6487 3.431766 CCAATAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
6124 6488 2.502538 CCAATAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
6125 6489 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
6126 6490 1.280998 ACCAATAAACCAGGACGGAGG 59.719 52.381 0.00 0.00 38.63 4.30
6127 6491 2.629051 GACCAATAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
6128 6492 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
6129 6493 1.680860 GGGACCAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
6130 6494 1.746470 GGGACCAATAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
6144 6508 3.562609 TGGCACAAAATACTAAGGGGACC 60.563 47.826 0.00 0.00 45.14 4.46
6145 6509 3.692690 TGGCACAAAATACTAAGGGGAC 58.307 45.455 0.00 0.00 31.92 4.46
6160 6524 3.826524 TCTATGGTCAAAGTTTGGCACA 58.173 40.909 21.09 16.04 36.88 4.57
6161 6525 5.391312 AATCTATGGTCAAAGTTTGGCAC 57.609 39.130 21.09 10.24 36.88 5.01
6162 6526 7.232534 AGTTAAATCTATGGTCAAAGTTTGGCA 59.767 33.333 21.09 8.42 36.88 4.92
6163 6527 7.602753 AGTTAAATCTATGGTCAAAGTTTGGC 58.397 34.615 15.47 13.73 33.62 4.52
6202 6566 9.715123 CAACGATATAATTTTTAGTGACATGCA 57.285 29.630 0.00 0.00 0.00 3.96
6203 6567 9.169468 CCAACGATATAATTTTTAGTGACATGC 57.831 33.333 0.00 0.00 0.00 4.06
6222 6586 8.956426 ACTACATTCAAATACAAATCCAACGAT 58.044 29.630 0.00 0.00 0.00 3.73
6223 6587 8.330466 ACTACATTCAAATACAAATCCAACGA 57.670 30.769 0.00 0.00 0.00 3.85
6224 6588 8.964420 AACTACATTCAAATACAAATCCAACG 57.036 30.769 0.00 0.00 0.00 4.10
6251 6615 8.682710 GCATGTAACCAAAAATAGTATCCTTGA 58.317 33.333 0.00 0.00 0.00 3.02
6252 6616 8.465999 TGCATGTAACCAAAAATAGTATCCTTG 58.534 33.333 0.00 0.00 0.00 3.61
6253 6617 8.588290 TGCATGTAACCAAAAATAGTATCCTT 57.412 30.769 0.00 0.00 0.00 3.36
6254 6618 8.766994 ATGCATGTAACCAAAAATAGTATCCT 57.233 30.769 0.00 0.00 0.00 3.24
6299 6663 9.474920 CATTTTGTGCTAAATTTTGACCTTAGA 57.525 29.630 3.69 0.00 0.00 2.10
6317 6681 0.243636 GGTCCCCTTCGCATTTTGTG 59.756 55.000 0.00 0.00 0.00 3.33
6318 6682 0.178975 TGGTCCCCTTCGCATTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
6319 6683 0.965439 TTGGTCCCCTTCGCATTTTG 59.035 50.000 0.00 0.00 0.00 2.44
6320 6684 1.937191 ATTGGTCCCCTTCGCATTTT 58.063 45.000 0.00 0.00 0.00 1.82
6321 6685 2.818751 TATTGGTCCCCTTCGCATTT 57.181 45.000 0.00 0.00 0.00 2.32
6322 6686 2.758423 GTTTATTGGTCCCCTTCGCATT 59.242 45.455 0.00 0.00 0.00 3.56
6323 6687 2.025321 AGTTTATTGGTCCCCTTCGCAT 60.025 45.455 0.00 0.00 0.00 4.73
6324 6688 1.353022 AGTTTATTGGTCCCCTTCGCA 59.647 47.619 0.00 0.00 0.00 5.10
6325 6689 2.124277 AGTTTATTGGTCCCCTTCGC 57.876 50.000 0.00 0.00 0.00 4.70
6326 6690 3.453353 TCCTAGTTTATTGGTCCCCTTCG 59.547 47.826 0.00 0.00 0.00 3.79
6327 6691 4.682589 CGTCCTAGTTTATTGGTCCCCTTC 60.683 50.000 0.00 0.00 0.00 3.46
6328 6692 3.199289 CGTCCTAGTTTATTGGTCCCCTT 59.801 47.826 0.00 0.00 0.00 3.95
6329 6693 2.770232 CGTCCTAGTTTATTGGTCCCCT 59.230 50.000 0.00 0.00 0.00 4.79
6330 6694 2.158856 CCGTCCTAGTTTATTGGTCCCC 60.159 54.545 0.00 0.00 0.00 4.81
6331 6695 2.767960 TCCGTCCTAGTTTATTGGTCCC 59.232 50.000 0.00 0.00 0.00 4.46
6332 6696 3.181468 CCTCCGTCCTAGTTTATTGGTCC 60.181 52.174 0.00 0.00 0.00 4.46
6333 6697 3.450096 ACCTCCGTCCTAGTTTATTGGTC 59.550 47.826 0.00 0.00 0.00 4.02
6334 6698 3.447950 ACCTCCGTCCTAGTTTATTGGT 58.552 45.455 0.00 0.00 0.00 3.67
6335 6699 4.648307 ACTACCTCCGTCCTAGTTTATTGG 59.352 45.833 0.00 0.00 0.00 3.16
6336 6700 5.848833 ACTACCTCCGTCCTAGTTTATTG 57.151 43.478 0.00 0.00 0.00 1.90
6337 6701 6.667661 ACTACTACCTCCGTCCTAGTTTATT 58.332 40.000 0.00 0.00 0.00 1.40
6338 6702 6.259346 ACTACTACCTCCGTCCTAGTTTAT 57.741 41.667 0.00 0.00 0.00 1.40
6339 6703 5.396884 GGACTACTACCTCCGTCCTAGTTTA 60.397 48.000 0.00 0.00 42.02 2.01
6340 6704 4.522114 GACTACTACCTCCGTCCTAGTTT 58.478 47.826 0.00 0.00 0.00 2.66
6341 6705 3.118075 GGACTACTACCTCCGTCCTAGTT 60.118 52.174 0.00 0.00 42.02 2.24
6342 6706 2.437651 GGACTACTACCTCCGTCCTAGT 59.562 54.545 0.00 0.00 42.02 2.57
6343 6707 3.124578 GGACTACTACCTCCGTCCTAG 57.875 57.143 0.00 0.00 42.02 3.02
6346 6710 1.965935 GAGGACTACTACCTCCGTCC 58.034 60.000 0.00 0.00 45.64 4.79
6352 6716 5.958987 AGCAAACATTAGAGGACTACTACCT 59.041 40.000 0.00 0.00 40.80 3.08
6353 6717 6.223351 AGCAAACATTAGAGGACTACTACC 57.777 41.667 0.00 0.00 0.00 3.18
6354 6718 6.535508 CCAAGCAAACATTAGAGGACTACTAC 59.464 42.308 0.00 0.00 0.00 2.73
6355 6719 6.212791 ACCAAGCAAACATTAGAGGACTACTA 59.787 38.462 0.00 0.00 0.00 1.82
6356 6720 5.013183 ACCAAGCAAACATTAGAGGACTACT 59.987 40.000 0.00 0.00 0.00 2.57
6357 6721 5.246307 ACCAAGCAAACATTAGAGGACTAC 58.754 41.667 0.00 0.00 0.00 2.73
6358 6722 5.499004 ACCAAGCAAACATTAGAGGACTA 57.501 39.130 0.00 0.00 0.00 2.59
6444 6808 0.030638 CTTGGTTGACCGCTGTTTGG 59.969 55.000 0.00 0.00 39.43 3.28
6449 6813 1.283793 CAAGCTTGGTTGACCGCTG 59.716 57.895 19.14 0.00 39.43 5.18
6475 6839 3.282885 TGAGTGTTAATGCACCACACAA 58.717 40.909 21.02 10.30 42.81 3.33
6512 6876 5.049680 CCACTTGAACTTACACGCAAAGTAT 60.050 40.000 0.00 0.00 36.17 2.12
6527 6891 5.049129 GCATCCTGCTATATTCCACTTGAAC 60.049 44.000 0.00 0.00 40.96 3.18
6627 6991 5.854010 TGGATAAAGCGATCTCAGTAAGT 57.146 39.130 0.00 0.00 0.00 2.24
6632 6996 8.315391 TCAAATTATGGATAAAGCGATCTCAG 57.685 34.615 0.00 0.00 0.00 3.35
6693 7058 8.086522 TGTATTTCTAGTGACCACAGACTAAAC 58.913 37.037 2.78 0.00 0.00 2.01
6782 7148 2.032178 GCAGAATAAACAGCCGATGTCC 59.968 50.000 0.00 0.00 43.00 4.02
6792 7158 5.063438 GCTGTTATCTCACGCAGAATAAACA 59.937 40.000 0.00 9.00 33.62 2.83
6793 7159 5.063438 TGCTGTTATCTCACGCAGAATAAAC 59.937 40.000 0.00 0.00 33.62 2.01
6815 7181 6.961554 GTCTAGTAACACAGTAATGCATTTGC 59.038 38.462 18.75 11.13 42.50 3.68
6828 7194 3.508402 TCGCCAATCTGTCTAGTAACACA 59.492 43.478 0.00 0.00 0.00 3.72
6837 7206 3.548745 TGATCATTCGCCAATCTGTCT 57.451 42.857 0.00 0.00 0.00 3.41
6879 7249 0.037326 TTGGGACTTGCACTCTAGCG 60.037 55.000 0.00 0.00 37.31 4.26
6947 7317 4.671250 GCTCAACTTCTCAATTGCTACTGC 60.671 45.833 0.00 0.00 40.20 4.40
6985 7355 2.086869 CATACCAAAGTGCAGGTCCAG 58.913 52.381 0.00 0.00 39.31 3.86
7017 7387 6.708949 ACGAGTTTCCAAGCTTAAGTTATCAA 59.291 34.615 0.00 0.00 0.00 2.57
7076 7446 7.615582 TGAGCTGTATCTCATTTTACCAAAG 57.384 36.000 0.00 0.00 38.11 2.77
7314 7684 7.513856 TGGGCAACATGTATTCTAGCTATAAA 58.486 34.615 0.00 0.00 39.74 1.40
7396 7767 8.477256 CCATAATACATGAAAATTCCTTGGTGT 58.523 33.333 0.00 0.00 0.00 4.16
7444 7815 0.179166 CGGAACATGGTTGATTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
7485 7861 7.869937 ACAGAGATACGATAATCAACATGGAAG 59.130 37.037 0.00 0.00 0.00 3.46
7486 7862 7.726216 ACAGAGATACGATAATCAACATGGAA 58.274 34.615 0.00 0.00 0.00 3.53
7487 7863 7.290110 ACAGAGATACGATAATCAACATGGA 57.710 36.000 0.00 0.00 0.00 3.41
7488 7864 7.116948 GGAACAGAGATACGATAATCAACATGG 59.883 40.741 0.00 0.00 0.00 3.66
7489 7865 7.869937 AGGAACAGAGATACGATAATCAACATG 59.130 37.037 0.00 0.00 0.00 3.21
7573 7949 1.893808 GCACATGCCGATGTAGGGG 60.894 63.158 0.00 0.00 41.12 4.79
7576 7987 1.884464 AGCGCACATGCCGATGTAG 60.884 57.895 11.47 0.00 41.12 2.74
7578 7989 3.502455 CAGCGCACATGCCGATGT 61.502 61.111 11.47 0.00 44.08 3.06
7659 8072 7.643569 AAATGTGCATATATGACAACTTGGA 57.356 32.000 17.10 0.00 0.00 3.53
7677 8090 9.536558 CAAGATTGAACAATGCATAAAAATGTG 57.463 29.630 0.00 0.00 0.00 3.21
7771 8184 0.882927 TCGCTTTTCCACAACCTCCG 60.883 55.000 0.00 0.00 0.00 4.63
7780 8193 0.662374 GACGTCTCGTCGCTTTTCCA 60.662 55.000 8.70 0.00 46.56 3.53
7796 8209 1.299541 ACAAGGAACTGCAACTGACG 58.700 50.000 0.00 0.00 40.86 4.35
7804 8217 8.303876 TCCAAAGAATAATAAACAAGGAACTGC 58.696 33.333 0.00 0.00 40.86 4.40
7822 8235 5.916318 AGACAAAATGCAACATCCAAAGAA 58.084 33.333 0.00 0.00 0.00 2.52
7863 8276 1.065418 GTCCATGGAAGTTCGGTGGAT 60.065 52.381 18.20 0.00 40.72 3.41
7929 8351 3.512329 TCTTCAACCACTCCGCAATACTA 59.488 43.478 0.00 0.00 0.00 1.82
7969 8391 1.144093 TGTTGAAAGTGGGTAGGGGTG 59.856 52.381 0.00 0.00 0.00 4.61
8020 8446 3.057946 CAGCTTCCTTGTTACTTTGCCTC 60.058 47.826 0.00 0.00 0.00 4.70
8023 8449 2.608016 GCCAGCTTCCTTGTTACTTTGC 60.608 50.000 0.00 0.00 0.00 3.68
8025 8451 2.239400 GGCCAGCTTCCTTGTTACTTT 58.761 47.619 0.00 0.00 0.00 2.66
8036 8462 1.599542 GATGATAACACGGCCAGCTTC 59.400 52.381 2.24 0.00 0.00 3.86
8039 8465 1.166531 GGGATGATAACACGGCCAGC 61.167 60.000 2.24 0.00 0.00 4.85
8046 8472 1.583054 GACGCCAGGGATGATAACAC 58.417 55.000 0.00 0.00 0.00 3.32
8202 8628 2.908940 GCAGTTGCAGCTGTGGGT 60.909 61.111 28.21 0.00 41.59 4.51
8249 8684 3.317993 GGAAGGCAGTTTGTATGTGTGTT 59.682 43.478 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.