Multiple sequence alignment - TraesCS7B01G087200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G087200 chr7B 100.000 3143 0 0 1 3143 101715646 101718788 0.000000e+00 5805
1 TraesCS7B01G087200 chr7B 92.542 952 65 6 1546 2492 60578236 60577286 0.000000e+00 1360
2 TraesCS7B01G087200 chr7B 93.662 426 21 4 2723 3143 550463731 550463307 1.590000e-177 632
3 TraesCS7B01G087200 chr3B 95.353 2496 99 12 1 2492 436377652 436375170 0.000000e+00 3951
4 TraesCS7B01G087200 chr3B 93.230 901 59 2 5 904 21574794 21573895 0.000000e+00 1325
5 TraesCS7B01G087200 chr3B 96.170 235 9 0 2486 2720 803878031 803877797 4.920000e-103 385
6 TraesCS7B01G087200 chr3B 94.492 236 13 0 2486 2721 787976587 787976822 6.410000e-97 364
7 TraesCS7B01G087200 chr5B 95.790 1544 62 3 1 1544 10497062 10498602 0.000000e+00 2488
8 TraesCS7B01G087200 chr5B 94.439 953 47 4 1543 2492 10498891 10499840 0.000000e+00 1461
9 TraesCS7B01G087200 chr5B 92.466 969 67 5 1 965 49393162 49394128 0.000000e+00 1380
10 TraesCS7B01G087200 chr2B 95.210 1545 70 4 1 1544 22381435 22382976 0.000000e+00 2440
11 TraesCS7B01G087200 chr2B 93.920 954 52 5 1543 2492 22383265 22384216 0.000000e+00 1435
12 TraesCS7B01G087200 chr2B 93.662 426 22 5 2721 3143 102598562 102598139 1.590000e-177 632
13 TraesCS7B01G087200 chr2B 94.492 236 13 0 2486 2721 22384177 22384412 6.410000e-97 364
14 TraesCS7B01G087200 chr4B 93.157 1549 83 13 1 1544 560023789 560022259 0.000000e+00 2252
15 TraesCS7B01G087200 chr4B 89.205 1547 130 14 1 1543 222963755 222965268 0.000000e+00 1897
16 TraesCS7B01G087200 chr4B 94.000 950 50 6 1548 2492 531453537 531454484 0.000000e+00 1432
17 TraesCS7B01G087200 chr4B 92.929 891 61 2 15 904 108080334 108081223 0.000000e+00 1295
18 TraesCS7B01G087200 chr4B 89.744 624 57 6 781 1399 102827080 102827701 0.000000e+00 791
19 TraesCS7B01G087200 chr4B 89.263 624 59 7 781 1399 440772919 440773539 0.000000e+00 774
20 TraesCS7B01G087200 chr4B 93.882 425 23 3 2721 3143 383715539 383715116 3.420000e-179 638
21 TraesCS7B01G087200 chr4B 93.443 427 22 3 2721 3143 524371631 524371207 2.060000e-176 628
22 TraesCS7B01G087200 chr4B 96.610 236 8 0 2486 2721 531454445 531454680 2.940000e-105 392
23 TraesCS7B01G087200 chr4B 88.843 242 27 0 488 729 102826821 102827062 6.590000e-77 298
24 TraesCS7B01G087200 chr4B 86.777 242 30 2 488 729 440772662 440772901 5.170000e-68 268
25 TraesCS7B01G087200 chr1D 93.070 1544 81 9 1 1539 417758526 417760048 0.000000e+00 2235
26 TraesCS7B01G087200 chr5A 92.243 1547 92 11 1 1544 693881107 693879586 0.000000e+00 2167
27 TraesCS7B01G087200 chr6D 93.197 1367 62 11 188 1544 56529 55184 0.000000e+00 1980
28 TraesCS7B01G087200 chr6D 94.145 427 19 4 2721 3143 263844800 263845224 0.000000e+00 645
29 TraesCS7B01G087200 chr6D 93.662 426 20 5 2721 3143 7818393 7818814 5.720000e-177 630
30 TraesCS7B01G087200 chr6D 89.754 488 27 3 527 1014 280313824 280314288 1.250000e-168 603
31 TraesCS7B01G087200 chr1B 94.963 953 45 3 1543 2492 678501280 678502232 0.000000e+00 1491
32 TraesCS7B01G087200 chr1B 96.654 777 21 3 768 1544 678500222 678500993 0.000000e+00 1286
33 TraesCS7B01G087200 chr1B 95.660 576 20 4 973 1544 92852646 92852072 0.000000e+00 920
34 TraesCS7B01G087200 chr1B 94.894 235 12 0 2486 2720 678502193 678502427 4.950000e-98 368
35 TraesCS7B01G087200 chr1B 92.050 239 18 1 1 239 678499985 678500222 5.020000e-88 335
36 TraesCS7B01G087200 chr4D 94.450 955 44 8 1546 2492 437398573 437397620 0.000000e+00 1461
37 TraesCS7B01G087200 chr4D 97.774 539 11 1 759 1296 437399827 437399289 0.000000e+00 928
38 TraesCS7B01G087200 chr4D 97.412 541 11 2 759 1296 115695989 115696529 0.000000e+00 918
39 TraesCS7B01G087200 chr4D 95.745 235 10 0 2486 2720 437397659 437397425 2.290000e-101 379
40 TraesCS7B01G087200 chr7A 92.962 952 60 7 1544 2490 321839080 321838131 0.000000e+00 1380
41 TraesCS7B01G087200 chr7A 92.445 953 66 6 1546 2492 114451260 114450308 0.000000e+00 1356
42 TraesCS7B01G087200 chr7A 94.468 235 13 0 2486 2720 114450347 114450113 2.300000e-96 363
43 TraesCS7B01G087200 chr6B 93.111 900 57 4 6 904 648850588 648851483 0.000000e+00 1314
44 TraesCS7B01G087200 chr6B 93.000 900 59 3 6 904 648886636 648887532 0.000000e+00 1310
45 TraesCS7B01G087200 chr2D 96.320 788 26 3 759 1544 573297950 573298736 0.000000e+00 1291
46 TraesCS7B01G087200 chr2D 95.130 616 27 3 931 1543 613465702 613466317 0.000000e+00 968
47 TraesCS7B01G087200 chr2D 93.458 428 22 4 2721 3143 119922937 119923363 5.720000e-177 630
48 TraesCS7B01G087200 chr2D 94.915 236 12 0 2486 2721 573307461 573307696 1.380000e-98 370
49 TraesCS7B01G087200 chr5D 93.994 616 34 3 931 1543 52596344 52596959 0.000000e+00 929
50 TraesCS7B01G087200 chr5D 93.662 426 20 7 2721 3143 419423429 419423008 5.720000e-177 630
51 TraesCS7B01G087200 chr7D 93.677 427 21 5 2721 3143 526198815 526198391 4.420000e-178 634
52 TraesCS7B01G087200 chr7D 93.004 243 17 0 2486 2728 618626816 618626574 3.860000e-94 355
53 TraesCS7B01G087200 chr6A 90.909 242 22 0 488 729 281226224 281226465 3.020000e-85 326
54 TraesCS7B01G087200 chr6A 90.871 241 22 0 489 729 58467080 58466840 1.090000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G087200 chr7B 101715646 101718788 3142 False 5805.000000 5805 100.000000 1 3143 1 chr7B.!!$F1 3142
1 TraesCS7B01G087200 chr7B 60577286 60578236 950 True 1360.000000 1360 92.542000 1546 2492 1 chr7B.!!$R1 946
2 TraesCS7B01G087200 chr3B 436375170 436377652 2482 True 3951.000000 3951 95.353000 1 2492 1 chr3B.!!$R2 2491
3 TraesCS7B01G087200 chr3B 21573895 21574794 899 True 1325.000000 1325 93.230000 5 904 1 chr3B.!!$R1 899
4 TraesCS7B01G087200 chr5B 10497062 10499840 2778 False 1974.500000 2488 95.114500 1 2492 2 chr5B.!!$F2 2491
5 TraesCS7B01G087200 chr5B 49393162 49394128 966 False 1380.000000 1380 92.466000 1 965 1 chr5B.!!$F1 964
6 TraesCS7B01G087200 chr2B 22381435 22384412 2977 False 1413.000000 2440 94.540667 1 2721 3 chr2B.!!$F1 2720
7 TraesCS7B01G087200 chr4B 560022259 560023789 1530 True 2252.000000 2252 93.157000 1 1544 1 chr4B.!!$R3 1543
8 TraesCS7B01G087200 chr4B 222963755 222965268 1513 False 1897.000000 1897 89.205000 1 1543 1 chr4B.!!$F2 1542
9 TraesCS7B01G087200 chr4B 108080334 108081223 889 False 1295.000000 1295 92.929000 15 904 1 chr4B.!!$F1 889
10 TraesCS7B01G087200 chr4B 531453537 531454680 1143 False 912.000000 1432 95.305000 1548 2721 2 chr4B.!!$F5 1173
11 TraesCS7B01G087200 chr4B 102826821 102827701 880 False 544.500000 791 89.293500 488 1399 2 chr4B.!!$F3 911
12 TraesCS7B01G087200 chr4B 440772662 440773539 877 False 521.000000 774 88.020000 488 1399 2 chr4B.!!$F4 911
13 TraesCS7B01G087200 chr1D 417758526 417760048 1522 False 2235.000000 2235 93.070000 1 1539 1 chr1D.!!$F1 1538
14 TraesCS7B01G087200 chr5A 693879586 693881107 1521 True 2167.000000 2167 92.243000 1 1544 1 chr5A.!!$R1 1543
15 TraesCS7B01G087200 chr6D 55184 56529 1345 True 1980.000000 1980 93.197000 188 1544 1 chr6D.!!$R1 1356
16 TraesCS7B01G087200 chr1B 92852072 92852646 574 True 920.000000 920 95.660000 973 1544 1 chr1B.!!$R1 571
17 TraesCS7B01G087200 chr1B 678499985 678502427 2442 False 870.000000 1491 94.640250 1 2720 4 chr1B.!!$F1 2719
18 TraesCS7B01G087200 chr4D 437397425 437399827 2402 True 922.666667 1461 95.989667 759 2720 3 chr4D.!!$R1 1961
19 TraesCS7B01G087200 chr4D 115695989 115696529 540 False 918.000000 918 97.412000 759 1296 1 chr4D.!!$F1 537
20 TraesCS7B01G087200 chr7A 321838131 321839080 949 True 1380.000000 1380 92.962000 1544 2490 1 chr7A.!!$R1 946
21 TraesCS7B01G087200 chr7A 114450113 114451260 1147 True 859.500000 1356 93.456500 1546 2720 2 chr7A.!!$R2 1174
22 TraesCS7B01G087200 chr6B 648850588 648851483 895 False 1314.000000 1314 93.111000 6 904 1 chr6B.!!$F1 898
23 TraesCS7B01G087200 chr6B 648886636 648887532 896 False 1310.000000 1310 93.000000 6 904 1 chr6B.!!$F2 898
24 TraesCS7B01G087200 chr2D 573297950 573298736 786 False 1291.000000 1291 96.320000 759 1544 1 chr2D.!!$F2 785
25 TraesCS7B01G087200 chr2D 613465702 613466317 615 False 968.000000 968 95.130000 931 1543 1 chr2D.!!$F4 612
26 TraesCS7B01G087200 chr5D 52596344 52596959 615 False 929.000000 929 93.994000 931 1543 1 chr5D.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 1.069906 CCGTGAGCTGCTTGTGTTTAC 60.070 52.381 2.53 0.0 0.0 2.01 F
434 440 1.228894 TGACTCTGCTCTCCCCGTT 60.229 57.895 0.00 0.0 0.0 4.44 F
571 585 2.808543 CAGCACAAGTACAAGAAGGGTC 59.191 50.000 0.00 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 2561 0.388649 GGAGACAATGTCACGAGCGT 60.389 55.0 16.38 0.0 34.60 5.07 R
1745 2562 1.078759 GGGAGACAATGTCACGAGCG 61.079 60.0 16.38 0.0 34.60 5.03 R
2566 3390 0.536687 TAGTAGTAGCGCGGATGCCT 60.537 55.0 8.83 0.0 38.08 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.605295 TCCCGTCCACATTCCCGT 60.605 61.111 0.00 0.00 0.00 5.28
35 36 1.069906 CCGTGAGCTGCTTGTGTTTAC 60.070 52.381 2.53 0.00 0.00 2.01
107 109 2.311542 TGCCCACCTACAATCCTCATTT 59.688 45.455 0.00 0.00 0.00 2.32
148 150 2.436417 CCACATTGAACGATCCCAGTT 58.564 47.619 0.00 0.00 34.07 3.16
176 178 1.820519 GAATGCATCTGGTCCAGCAAA 59.179 47.619 14.64 0.00 40.76 3.68
185 187 1.767692 GTCCAGCAAAAGGGGAGGA 59.232 57.895 0.00 0.00 0.00 3.71
262 264 7.595502 GCTTCAAGTACTAGCATACGTATGATT 59.404 37.037 34.11 23.58 35.75 2.57
411 414 5.478679 AGCAAGACACAACTATACTCACTCT 59.521 40.000 0.00 0.00 0.00 3.24
434 440 1.228894 TGACTCTGCTCTCCCCGTT 60.229 57.895 0.00 0.00 0.00 4.44
539 552 5.493133 TTGTTGTTAGTGCTTAGGTTGTG 57.507 39.130 0.00 0.00 0.00 3.33
571 585 2.808543 CAGCACAAGTACAAGAAGGGTC 59.191 50.000 0.00 0.00 0.00 4.46
1129 1184 3.821033 GCCTTTGTTTCCTTCAGCTTCTA 59.179 43.478 0.00 0.00 0.00 2.10
1380 1518 7.600752 TCAGATTTTGTCGAACACACATGTATA 59.399 33.333 0.00 0.00 38.45 1.47
1384 1522 8.942669 TTTTGTCGAACACACATGTATATTTC 57.057 30.769 0.00 0.00 38.45 2.17
1503 1798 3.641046 TGCCCCATGTATTTGCTTGTAT 58.359 40.909 0.00 0.00 0.00 2.29
1683 2500 9.845305 GCGTTACTATGAGTTCATTGTATTAAC 57.155 33.333 14.19 11.40 41.56 2.01
1709 2526 4.288626 TCCTTACAACTTTAGGCACCTGAT 59.711 41.667 0.00 0.00 0.00 2.90
1744 2561 1.767692 GGGACCCAGCCTTCTTCAA 59.232 57.895 5.33 0.00 0.00 2.69
1745 2562 0.609406 GGGACCCAGCCTTCTTCAAC 60.609 60.000 5.33 0.00 0.00 3.18
1751 2568 0.946221 CAGCCTTCTTCAACGCTCGT 60.946 55.000 0.00 0.00 0.00 4.18
1756 2573 2.061773 CTTCTTCAACGCTCGTGACAT 58.938 47.619 0.00 0.00 0.00 3.06
1816 2633 0.992802 GCCATTCTTCACGTCTCGTC 59.007 55.000 0.00 0.00 38.32 4.20
1859 2677 6.025749 TCTGGCTATACTATTGATTCGTGG 57.974 41.667 0.00 0.00 0.00 4.94
1901 2720 5.491078 AGAAAATACCCTACTGGATTGGACA 59.509 40.000 0.00 0.00 38.00 4.02
2001 2820 0.033504 TCGTGCTCTTCAACCACTCC 59.966 55.000 0.00 0.00 0.00 3.85
2055 2874 0.179137 TCGCACAGATGATCGTCCAC 60.179 55.000 11.42 0.00 0.00 4.02
2215 3034 3.947910 TGGAACACTAGGAAAGGTACG 57.052 47.619 0.00 0.00 0.00 3.67
2345 3164 7.946207 TGTGACCTTAATTTATTTTGCACTGA 58.054 30.769 0.00 0.00 0.00 3.41
2346 3165 8.081633 TGTGACCTTAATTTATTTTGCACTGAG 58.918 33.333 0.00 0.00 0.00 3.35
2444 3268 3.014623 GGGGGAAAATGTGTGCTACTAC 58.985 50.000 0.00 0.00 0.00 2.73
2449 3273 6.260271 GGGGAAAATGTGTGCTACTACTATTC 59.740 42.308 0.00 0.00 0.00 1.75
2450 3274 7.048512 GGGAAAATGTGTGCTACTACTATTCT 58.951 38.462 0.00 0.00 0.00 2.40
2451 3275 7.011482 GGGAAAATGTGTGCTACTACTATTCTG 59.989 40.741 0.00 0.00 0.00 3.02
2453 3277 8.848474 AAAATGTGTGCTACTACTATTCTGTT 57.152 30.769 0.00 0.00 0.00 3.16
2454 3278 9.938280 AAAATGTGTGCTACTACTATTCTGTTA 57.062 29.630 0.00 0.00 0.00 2.41
2463 3287 9.757859 GCTACTACTATTCTGTTATTAGTAGCG 57.242 37.037 17.98 8.25 44.71 4.26
2466 3290 8.566260 ACTACTATTCTGTTATTAGTAGCGTGG 58.434 37.037 13.53 0.00 42.87 4.94
2467 3291 6.746120 ACTATTCTGTTATTAGTAGCGTGGG 58.254 40.000 0.00 0.00 0.00 4.61
2468 3292 5.609533 ATTCTGTTATTAGTAGCGTGGGT 57.390 39.130 0.00 0.00 0.00 4.51
2469 3293 6.720112 ATTCTGTTATTAGTAGCGTGGGTA 57.280 37.500 0.00 0.00 0.00 3.69
2470 3294 6.720112 TTCTGTTATTAGTAGCGTGGGTAT 57.280 37.500 0.00 0.00 0.00 2.73
2471 3295 7.822161 TTCTGTTATTAGTAGCGTGGGTATA 57.178 36.000 0.00 0.00 0.00 1.47
2472 3296 7.822161 TCTGTTATTAGTAGCGTGGGTATAA 57.178 36.000 0.00 0.00 0.00 0.98
2473 3297 8.413309 TCTGTTATTAGTAGCGTGGGTATAAT 57.587 34.615 0.00 0.00 0.00 1.28
2474 3298 9.519191 TCTGTTATTAGTAGCGTGGGTATAATA 57.481 33.333 0.00 0.00 0.00 0.98
2475 3299 9.784680 CTGTTATTAGTAGCGTGGGTATAATAG 57.215 37.037 0.00 0.00 0.00 1.73
2476 3300 9.300681 TGTTATTAGTAGCGTGGGTATAATAGT 57.699 33.333 0.00 0.00 0.00 2.12
2479 3303 4.879598 AGTAGCGTGGGTATAATAGTTGC 58.120 43.478 0.00 0.00 0.00 4.17
2480 3304 2.750948 AGCGTGGGTATAATAGTTGCG 58.249 47.619 0.00 0.00 0.00 4.85
2481 3305 1.193874 GCGTGGGTATAATAGTTGCGC 59.806 52.381 0.00 0.00 35.77 6.09
2482 3306 2.750948 CGTGGGTATAATAGTTGCGCT 58.249 47.619 9.73 0.00 0.00 5.92
2483 3307 3.858129 GCGTGGGTATAATAGTTGCGCTA 60.858 47.826 9.73 0.00 39.35 4.26
2484 3308 3.671928 CGTGGGTATAATAGTTGCGCTAC 59.328 47.826 14.34 14.34 31.59 3.58
2490 3314 7.613022 TGGGTATAATAGTTGCGCTACTACTAT 59.387 37.037 29.34 28.07 45.50 2.12
2509 3333 9.512588 ACTACTATTAGCGTGTGGTATAATAGT 57.487 33.333 16.37 16.37 45.99 2.12
2566 3390 5.413499 GTTTCAAATAGTAGTAGCGTGGGA 58.587 41.667 0.00 0.00 0.00 4.37
2666 3490 0.179936 ACTAGTAGCGCGAGTACCCT 59.820 55.000 12.10 0.00 31.17 4.34
2668 3492 0.533755 TAGTAGCGCGAGTACCCTCC 60.534 60.000 12.10 0.00 33.93 4.30
2721 3545 3.983044 AGCCTTTTCCCTAGTAGTGTG 57.017 47.619 0.00 0.00 0.00 3.82
2722 3546 3.248888 AGCCTTTTCCCTAGTAGTGTGT 58.751 45.455 0.00 0.00 0.00 3.72
2723 3547 3.008049 AGCCTTTTCCCTAGTAGTGTGTG 59.992 47.826 0.00 0.00 0.00 3.82
2724 3548 3.335579 CCTTTTCCCTAGTAGTGTGTGC 58.664 50.000 0.00 0.00 0.00 4.57
2725 3549 2.736144 TTTCCCTAGTAGTGTGTGCG 57.264 50.000 0.00 0.00 0.00 5.34
2726 3550 1.624336 TTCCCTAGTAGTGTGTGCGT 58.376 50.000 0.00 0.00 0.00 5.24
2727 3551 0.885879 TCCCTAGTAGTGTGTGCGTG 59.114 55.000 0.00 0.00 0.00 5.34
2728 3552 0.108804 CCCTAGTAGTGTGTGCGTGG 60.109 60.000 0.00 0.00 0.00 4.94
2729 3553 0.885879 CCTAGTAGTGTGTGCGTGGA 59.114 55.000 0.00 0.00 0.00 4.02
2730 3554 1.135373 CCTAGTAGTGTGTGCGTGGAG 60.135 57.143 0.00 0.00 0.00 3.86
2731 3555 1.810755 CTAGTAGTGTGTGCGTGGAGA 59.189 52.381 0.00 0.00 0.00 3.71
2732 3556 0.598562 AGTAGTGTGTGCGTGGAGAG 59.401 55.000 0.00 0.00 0.00 3.20
2733 3557 0.388649 GTAGTGTGTGCGTGGAGAGG 60.389 60.000 0.00 0.00 0.00 3.69
2734 3558 2.154798 TAGTGTGTGCGTGGAGAGGC 62.155 60.000 0.00 0.00 0.00 4.70
2735 3559 3.233980 TGTGTGCGTGGAGAGGCT 61.234 61.111 0.00 0.00 33.93 4.58
2736 3560 1.906333 TGTGTGCGTGGAGAGGCTA 60.906 57.895 0.00 0.00 33.93 3.93
2737 3561 1.292223 GTGTGCGTGGAGAGGCTAA 59.708 57.895 0.00 0.00 33.93 3.09
2738 3562 1.014564 GTGTGCGTGGAGAGGCTAAC 61.015 60.000 0.00 0.00 33.93 2.34
2739 3563 1.448013 GTGCGTGGAGAGGCTAACC 60.448 63.158 0.00 0.00 33.93 2.85
2740 3564 2.202756 GCGTGGAGAGGCTAACCG 60.203 66.667 0.00 0.00 42.76 4.44
2741 3565 3.003113 GCGTGGAGAGGCTAACCGT 62.003 63.158 0.00 0.00 42.76 4.83
2742 3566 1.590147 CGTGGAGAGGCTAACCGTT 59.410 57.895 0.00 0.00 42.76 4.44
2743 3567 0.736325 CGTGGAGAGGCTAACCGTTG 60.736 60.000 0.00 0.00 42.76 4.10
2744 3568 0.391263 GTGGAGAGGCTAACCGTTGG 60.391 60.000 0.00 0.00 42.76 3.77
2745 3569 1.221021 GGAGAGGCTAACCGTTGGG 59.779 63.158 0.00 0.00 42.76 4.12
2754 3578 4.360405 ACCGTTGGGTCCATGGCC 62.360 66.667 6.96 11.82 46.01 5.36
2758 3582 4.738998 TTGGGTCCATGGCCGCAG 62.739 66.667 12.58 0.00 0.00 5.18
2762 3586 3.818787 GTCCATGGCCGCAGCAAG 61.819 66.667 6.96 0.00 42.56 4.01
2765 3589 3.063704 CATGGCCGCAGCAAGGAA 61.064 61.111 0.00 0.00 42.56 3.36
2766 3590 2.753043 ATGGCCGCAGCAAGGAAG 60.753 61.111 0.00 0.00 42.56 3.46
2767 3591 3.574074 ATGGCCGCAGCAAGGAAGT 62.574 57.895 0.00 0.00 42.56 3.01
2768 3592 3.741476 GGCCGCAGCAAGGAAGTG 61.741 66.667 0.00 0.00 42.56 3.16
2769 3593 4.410743 GCCGCAGCAAGGAAGTGC 62.411 66.667 0.00 0.00 45.28 4.40
2770 3594 3.741476 CCGCAGCAAGGAAGTGCC 61.741 66.667 0.00 0.00 46.14 5.01
2781 3605 3.821421 AGGAAGTGCCTCCTTATTACG 57.179 47.619 0.00 0.00 46.97 3.18
2782 3606 2.158943 AGGAAGTGCCTCCTTATTACGC 60.159 50.000 0.00 0.00 46.97 4.42
2783 3607 1.859080 GAAGTGCCTCCTTATTACGCG 59.141 52.381 3.53 3.53 0.00 6.01
2784 3608 0.529992 AGTGCCTCCTTATTACGCGC 60.530 55.000 5.73 0.00 0.00 6.86
2785 3609 0.808453 GTGCCTCCTTATTACGCGCA 60.808 55.000 5.73 0.00 0.00 6.09
2786 3610 0.108089 TGCCTCCTTATTACGCGCAA 60.108 50.000 5.73 0.00 0.00 4.85
2787 3611 1.011333 GCCTCCTTATTACGCGCAAA 58.989 50.000 5.73 0.20 0.00 3.68
2788 3612 1.399089 GCCTCCTTATTACGCGCAAAA 59.601 47.619 5.73 0.00 0.00 2.44
2789 3613 2.032924 GCCTCCTTATTACGCGCAAAAT 59.967 45.455 5.73 8.89 0.00 1.82
2790 3614 3.249080 GCCTCCTTATTACGCGCAAAATA 59.751 43.478 5.73 7.79 0.00 1.40
2791 3615 4.260866 GCCTCCTTATTACGCGCAAAATAA 60.261 41.667 18.05 18.05 0.00 1.40
2792 3616 5.562113 GCCTCCTTATTACGCGCAAAATAAT 60.562 40.000 18.93 13.54 29.65 1.28
2793 3617 6.435428 CCTCCTTATTACGCGCAAAATAATT 58.565 36.000 18.93 0.00 29.65 1.40
2794 3618 7.577979 CCTCCTTATTACGCGCAAAATAATTA 58.422 34.615 18.93 11.97 29.65 1.40
2795 3619 8.234546 CCTCCTTATTACGCGCAAAATAATTAT 58.765 33.333 18.93 0.00 29.65 1.28
2796 3620 9.607285 CTCCTTATTACGCGCAAAATAATTATT 57.393 29.630 18.93 4.81 29.65 1.40
2797 3621 9.601971 TCCTTATTACGCGCAAAATAATTATTC 57.398 29.630 18.93 0.00 29.65 1.75
2798 3622 8.846607 CCTTATTACGCGCAAAATAATTATTCC 58.153 33.333 18.93 3.01 29.65 3.01
2799 3623 9.607285 CTTATTACGCGCAAAATAATTATTCCT 57.393 29.630 18.93 0.00 29.65 3.36
2800 3624 9.601971 TTATTACGCGCAAAATAATTATTCCTC 57.398 29.630 16.16 3.08 0.00 3.71
2801 3625 4.855531 ACGCGCAAAATAATTATTCCTCC 58.144 39.130 5.73 0.83 0.00 4.30
2802 3626 4.336993 ACGCGCAAAATAATTATTCCTCCA 59.663 37.500 5.73 0.00 0.00 3.86
2803 3627 4.675114 CGCGCAAAATAATTATTCCTCCAC 59.325 41.667 8.75 0.36 0.00 4.02
2804 3628 4.982295 GCGCAAAATAATTATTCCTCCACC 59.018 41.667 11.08 0.00 0.00 4.61
2805 3629 5.221244 GCGCAAAATAATTATTCCTCCACCT 60.221 40.000 11.08 0.00 0.00 4.00
2806 3630 6.208644 CGCAAAATAATTATTCCTCCACCTG 58.791 40.000 11.08 1.72 0.00 4.00
2807 3631 6.039270 CGCAAAATAATTATTCCTCCACCTGA 59.961 38.462 11.08 0.00 0.00 3.86
2808 3632 7.203218 GCAAAATAATTATTCCTCCACCTGAC 58.797 38.462 11.08 0.00 0.00 3.51
2809 3633 7.147915 GCAAAATAATTATTCCTCCACCTGACA 60.148 37.037 11.08 0.00 0.00 3.58
2810 3634 8.408601 CAAAATAATTATTCCTCCACCTGACAG 58.591 37.037 11.08 0.00 0.00 3.51
2811 3635 3.567478 ATTATTCCTCCACCTGACAGC 57.433 47.619 0.00 0.00 0.00 4.40
2812 3636 0.824109 TATTCCTCCACCTGACAGCG 59.176 55.000 0.00 0.00 0.00 5.18
2813 3637 1.903877 ATTCCTCCACCTGACAGCGG 61.904 60.000 0.00 0.00 0.00 5.52
2814 3638 4.087892 CCTCCACCTGACAGCGGG 62.088 72.222 8.77 6.76 46.62 6.13
2815 3639 4.087892 CTCCACCTGACAGCGGGG 62.088 72.222 9.87 8.01 45.41 5.73
2816 3640 4.631740 TCCACCTGACAGCGGGGA 62.632 66.667 10.02 10.02 45.41 4.81
2817 3641 4.394712 CCACCTGACAGCGGGGAC 62.395 72.222 6.41 0.00 45.41 4.46
2844 3668 3.493213 GGGCCACCGTATTTCGTG 58.507 61.111 4.39 0.00 37.94 4.35
2845 3669 1.078988 GGGCCACCGTATTTCGTGA 60.079 57.895 4.39 0.00 37.94 4.35
2846 3670 0.674269 GGGCCACCGTATTTCGTGAA 60.674 55.000 4.39 0.00 37.94 3.18
2847 3671 1.158434 GGCCACCGTATTTCGTGAAA 58.842 50.000 0.00 0.00 37.94 2.69
2848 3672 1.536331 GGCCACCGTATTTCGTGAAAA 59.464 47.619 0.00 0.00 37.94 2.29
2849 3673 2.030981 GGCCACCGTATTTCGTGAAAAA 60.031 45.455 0.00 0.00 37.94 1.94
2879 3703 2.930019 CCTGACTGCTGGGACCCA 60.930 66.667 14.08 14.08 0.00 4.51
2880 3704 2.348998 CTGACTGCTGGGACCCAC 59.651 66.667 9.95 7.65 0.00 4.61
2881 3705 3.249189 TGACTGCTGGGACCCACC 61.249 66.667 9.95 3.44 38.08 4.61
2882 3706 3.249189 GACTGCTGGGACCCACCA 61.249 66.667 9.95 9.00 41.20 4.17
2888 3712 2.205749 TGGGACCCACCAGCTACA 59.794 61.111 9.95 0.00 41.20 2.74
2889 3713 2.221299 TGGGACCCACCAGCTACAC 61.221 63.158 9.95 0.00 41.20 2.90
2890 3714 2.669240 GGACCCACCAGCTACACC 59.331 66.667 0.00 0.00 38.79 4.16
2891 3715 1.918800 GGACCCACCAGCTACACCT 60.919 63.158 0.00 0.00 38.79 4.00
2892 3716 1.489560 GGACCCACCAGCTACACCTT 61.490 60.000 0.00 0.00 38.79 3.50
2893 3717 0.036294 GACCCACCAGCTACACCTTC 60.036 60.000 0.00 0.00 0.00 3.46
2894 3718 1.079127 CCCACCAGCTACACCTTCG 60.079 63.158 0.00 0.00 0.00 3.79
2895 3719 1.741770 CCACCAGCTACACCTTCGC 60.742 63.158 0.00 0.00 0.00 4.70
2896 3720 1.005037 CACCAGCTACACCTTCGCA 60.005 57.895 0.00 0.00 0.00 5.10
2897 3721 1.004918 ACCAGCTACACCTTCGCAC 60.005 57.895 0.00 0.00 0.00 5.34
2898 3722 2.094659 CCAGCTACACCTTCGCACG 61.095 63.158 0.00 0.00 0.00 5.34
2899 3723 2.432628 AGCTACACCTTCGCACGC 60.433 61.111 0.00 0.00 0.00 5.34
2900 3724 2.736995 GCTACACCTTCGCACGCA 60.737 61.111 0.00 0.00 0.00 5.24
2901 3725 2.314647 GCTACACCTTCGCACGCAA 61.315 57.895 0.00 0.00 0.00 4.85
2903 3727 1.626654 CTACACCTTCGCACGCAAGG 61.627 60.000 15.21 15.21 45.41 3.61
2904 3728 2.089887 TACACCTTCGCACGCAAGGA 62.090 55.000 20.52 3.90 42.94 3.36
2905 3729 2.110213 ACCTTCGCACGCAAGGAA 59.890 55.556 20.52 3.35 42.94 3.36
2906 3730 1.961277 ACCTTCGCACGCAAGGAAG 60.961 57.895 20.52 10.99 42.94 3.46
2907 3731 1.961277 CCTTCGCACGCAAGGAAGT 60.961 57.895 12.85 0.00 42.94 3.01
2908 3732 1.205064 CTTCGCACGCAAGGAAGTG 59.795 57.895 0.00 0.00 46.39 3.16
2915 3739 3.423154 GCAAGGAAGTGCGTCCGG 61.423 66.667 0.00 0.00 43.03 5.14
2916 3740 2.742372 CAAGGAAGTGCGTCCGGG 60.742 66.667 0.00 0.00 43.03 5.73
2917 3741 4.699522 AAGGAAGTGCGTCCGGGC 62.700 66.667 0.00 0.00 43.03 6.13
2920 3744 2.975799 GAAGTGCGTCCGGGCAAA 60.976 61.111 6.96 0.00 45.93 3.68
2921 3745 2.517402 AAGTGCGTCCGGGCAAAA 60.517 55.556 6.96 0.00 45.93 2.44
2922 3746 2.065906 GAAGTGCGTCCGGGCAAAAA 62.066 55.000 6.96 0.00 45.93 1.94
2953 3777 2.930019 CCTGACTGCTGGGACCCA 60.930 66.667 14.08 14.08 0.00 4.51
2954 3778 2.348998 CTGACTGCTGGGACCCAC 59.651 66.667 9.95 7.65 0.00 4.61
2955 3779 3.249189 TGACTGCTGGGACCCACC 61.249 66.667 9.95 3.44 38.08 4.61
2956 3780 3.249189 GACTGCTGGGACCCACCA 61.249 66.667 9.95 9.00 41.20 4.17
2962 3786 2.205749 TGGGACCCACCAGCTACA 59.794 61.111 9.95 0.00 41.20 2.74
2963 3787 1.229820 TGGGACCCACCAGCTACAT 60.230 57.895 9.95 0.00 41.20 2.29
2964 3788 1.271840 TGGGACCCACCAGCTACATC 61.272 60.000 9.95 0.00 41.20 3.06
2965 3789 0.983378 GGGACCCACCAGCTACATCT 60.983 60.000 5.33 0.00 41.20 2.90
2966 3790 0.912486 GGACCCACCAGCTACATCTT 59.088 55.000 0.00 0.00 38.79 2.40
2967 3791 1.134371 GGACCCACCAGCTACATCTTC 60.134 57.143 0.00 0.00 38.79 2.87
2968 3792 0.537188 ACCCACCAGCTACATCTTCG 59.463 55.000 0.00 0.00 0.00 3.79
2969 3793 0.811616 CCCACCAGCTACATCTTCGC 60.812 60.000 0.00 0.00 0.00 4.70
2970 3794 0.108186 CCACCAGCTACATCTTCGCA 60.108 55.000 0.00 0.00 0.00 5.10
2971 3795 1.002366 CACCAGCTACATCTTCGCAC 58.998 55.000 0.00 0.00 0.00 5.34
2972 3796 0.458543 ACCAGCTACATCTTCGCACG 60.459 55.000 0.00 0.00 0.00 5.34
2973 3797 1.148157 CCAGCTACATCTTCGCACGG 61.148 60.000 0.00 0.00 0.00 4.94
2974 3798 0.179137 CAGCTACATCTTCGCACGGA 60.179 55.000 0.00 0.00 0.00 4.69
2975 3799 0.530744 AGCTACATCTTCGCACGGAA 59.469 50.000 0.00 0.00 0.00 4.30
2981 3805 4.675404 CTTCGCACGGAAGGAAGT 57.325 55.556 0.00 0.00 46.89 3.01
2982 3806 2.153913 CTTCGCACGGAAGGAAGTG 58.846 57.895 0.00 0.00 46.89 3.16
2986 3810 4.043168 CACGGAAGGAAGTGCGTT 57.957 55.556 0.00 0.00 43.53 4.84
2987 3811 1.860078 CACGGAAGGAAGTGCGTTC 59.140 57.895 0.00 0.00 43.53 3.95
2988 3812 1.663702 ACGGAAGGAAGTGCGTTCG 60.664 57.895 0.00 0.00 43.53 3.95
2989 3813 2.380410 CGGAAGGAAGTGCGTTCGG 61.380 63.158 0.00 0.00 41.19 4.30
2990 3814 2.033194 GGAAGGAAGTGCGTTCGGG 61.033 63.158 0.00 0.00 41.19 5.14
2991 3815 2.668550 AAGGAAGTGCGTTCGGGC 60.669 61.111 0.00 0.00 35.80 6.13
2992 3816 3.469863 AAGGAAGTGCGTTCGGGCA 62.470 57.895 0.00 0.00 41.45 5.36
2993 3817 2.951475 AAGGAAGTGCGTTCGGGCAA 62.951 55.000 0.00 0.00 45.93 4.52
2994 3818 2.548295 GGAAGTGCGTTCGGGCAAA 61.548 57.895 0.00 0.00 45.93 3.68
2995 3819 1.357334 GAAGTGCGTTCGGGCAAAA 59.643 52.632 0.00 0.00 45.93 2.44
2996 3820 0.248702 GAAGTGCGTTCGGGCAAAAA 60.249 50.000 0.00 0.00 45.93 1.94
3016 3840 2.222227 AAAAATCTCCCCCTGACTGC 57.778 50.000 0.00 0.00 0.00 4.40
3017 3841 1.376649 AAAATCTCCCCCTGACTGCT 58.623 50.000 0.00 0.00 0.00 4.24
3018 3842 0.622665 AAATCTCCCCCTGACTGCTG 59.377 55.000 0.00 0.00 0.00 4.41
3019 3843 1.277580 AATCTCCCCCTGACTGCTGG 61.278 60.000 0.00 0.00 0.00 4.85
3025 3849 2.930019 CCTGACTGCTGGGACCCA 60.930 66.667 14.08 14.08 0.00 4.51
3026 3850 2.348998 CTGACTGCTGGGACCCAC 59.651 66.667 9.95 7.65 0.00 4.61
3027 3851 3.249189 TGACTGCTGGGACCCACC 61.249 66.667 9.95 3.44 38.08 4.61
3028 3852 3.249189 GACTGCTGGGACCCACCA 61.249 66.667 9.95 9.00 41.20 4.17
3029 3853 2.776526 ACTGCTGGGACCCACCAA 60.777 61.111 9.95 0.00 40.68 3.67
3030 3854 2.282462 CTGCTGGGACCCACCAAC 60.282 66.667 9.95 0.00 40.68 3.77
3031 3855 2.776526 TGCTGGGACCCACCAACT 60.777 61.111 9.95 0.00 40.68 3.16
3032 3856 1.462432 TGCTGGGACCCACCAACTA 60.462 57.895 9.95 0.00 40.68 2.24
3033 3857 1.002502 GCTGGGACCCACCAACTAC 60.003 63.158 9.95 0.00 40.68 2.73
3034 3858 1.774894 GCTGGGACCCACCAACTACA 61.775 60.000 9.95 0.00 40.68 2.74
3035 3859 0.991920 CTGGGACCCACCAACTACAT 59.008 55.000 9.95 0.00 40.68 2.29
3036 3860 0.988832 TGGGACCCACCAACTACATC 59.011 55.000 9.95 0.00 41.20 3.06
3037 3861 1.286248 GGGACCCACCAACTACATCT 58.714 55.000 5.33 0.00 41.20 2.90
3038 3862 1.633945 GGGACCCACCAACTACATCTT 59.366 52.381 5.33 0.00 41.20 2.40
3039 3863 2.355818 GGGACCCACCAACTACATCTTC 60.356 54.545 5.33 0.00 41.20 2.87
3040 3864 2.618053 GACCCACCAACTACATCTTCG 58.382 52.381 0.00 0.00 0.00 3.79
3041 3865 1.338769 ACCCACCAACTACATCTTCGC 60.339 52.381 0.00 0.00 0.00 4.70
3042 3866 1.338674 CCCACCAACTACATCTTCGCA 60.339 52.381 0.00 0.00 0.00 5.10
3043 3867 2.002586 CCACCAACTACATCTTCGCAG 58.997 52.381 0.00 0.00 0.00 5.18
3044 3868 2.002586 CACCAACTACATCTTCGCAGG 58.997 52.381 0.00 0.00 0.00 4.85
3045 3869 1.009829 CCAACTACATCTTCGCAGGC 58.990 55.000 0.00 0.00 0.00 4.85
3046 3870 1.675714 CCAACTACATCTTCGCAGGCA 60.676 52.381 0.00 0.00 0.00 4.75
3047 3871 2.076100 CAACTACATCTTCGCAGGCAA 58.924 47.619 0.00 0.00 0.00 4.52
3048 3872 2.015736 ACTACATCTTCGCAGGCAAG 57.984 50.000 0.00 0.00 0.00 4.01
3049 3873 1.293924 CTACATCTTCGCAGGCAAGG 58.706 55.000 0.00 0.00 0.00 3.61
3050 3874 0.901827 TACATCTTCGCAGGCAAGGA 59.098 50.000 0.00 0.00 0.00 3.36
3051 3875 0.036732 ACATCTTCGCAGGCAAGGAA 59.963 50.000 0.00 0.00 0.00 3.36
3052 3876 0.731417 CATCTTCGCAGGCAAGGAAG 59.269 55.000 5.43 5.43 38.76 3.46
3053 3877 0.326264 ATCTTCGCAGGCAAGGAAGT 59.674 50.000 10.02 0.00 38.58 3.01
3054 3878 0.603707 TCTTCGCAGGCAAGGAAGTG 60.604 55.000 10.02 0.00 38.58 3.16
3055 3879 2.192608 CTTCGCAGGCAAGGAAGTGC 62.193 60.000 4.03 0.00 44.14 4.40
3065 3889 4.268687 GGAAGTGCCTGACAGTCG 57.731 61.111 0.93 0.00 0.00 4.18
3066 3890 1.374758 GGAAGTGCCTGACAGTCGG 60.375 63.158 1.86 1.86 0.00 4.79
3067 3891 1.374758 GAAGTGCCTGACAGTCGGG 60.375 63.158 22.91 22.91 45.82 5.14
3068 3892 1.816863 GAAGTGCCTGACAGTCGGGA 61.817 60.000 30.17 15.80 45.95 5.14
3069 3893 2.048127 GTGCCTGACAGTCGGGAC 60.048 66.667 30.17 22.29 45.95 4.46
3070 3894 3.311110 TGCCTGACAGTCGGGACC 61.311 66.667 30.17 14.80 45.95 4.46
3071 3895 4.083862 GCCTGACAGTCGGGACCC 62.084 72.222 30.17 10.41 45.95 4.46
3072 3896 2.603473 CCTGACAGTCGGGACCCA 60.603 66.667 22.82 0.00 45.95 4.51
3073 3897 2.657237 CTGACAGTCGGGACCCAC 59.343 66.667 12.15 8.13 0.00 4.61
3074 3898 2.920912 TGACAGTCGGGACCCACC 60.921 66.667 12.15 0.00 38.08 4.61
3075 3899 2.603776 GACAGTCGGGACCCACCT 60.604 66.667 12.15 1.76 38.98 4.00
3076 3900 2.923035 ACAGTCGGGACCCACCTG 60.923 66.667 20.06 20.06 45.93 4.00
3077 3901 3.706373 CAGTCGGGACCCACCTGG 61.706 72.222 12.15 0.00 44.73 4.45
3086 3910 2.671070 CCCACCTGGTCGAAGCAT 59.329 61.111 0.00 0.00 0.00 3.79
3087 3911 1.904771 CCCACCTGGTCGAAGCATA 59.095 57.895 0.00 0.00 0.00 3.14
3088 3912 0.462047 CCCACCTGGTCGAAGCATAC 60.462 60.000 0.00 0.00 0.00 2.39
3089 3913 0.806102 CCACCTGGTCGAAGCATACG 60.806 60.000 0.00 0.00 0.00 3.06
3090 3914 0.108804 CACCTGGTCGAAGCATACGT 60.109 55.000 0.00 0.00 0.00 3.57
3091 3915 1.133598 CACCTGGTCGAAGCATACGTA 59.866 52.381 0.00 0.00 0.00 3.57
3092 3916 1.404391 ACCTGGTCGAAGCATACGTAG 59.596 52.381 0.08 0.00 0.00 3.51
3093 3917 1.478137 CTGGTCGAAGCATACGTAGC 58.522 55.000 0.08 5.21 0.00 3.58
3094 3918 0.248336 TGGTCGAAGCATACGTAGCG 60.248 55.000 0.08 0.16 37.01 4.26
3095 3919 0.248377 GGTCGAAGCATACGTAGCGT 60.248 55.000 0.08 3.40 44.35 5.07
3096 3920 1.542544 GTCGAAGCATACGTAGCGTT 58.457 50.000 0.08 2.32 41.54 4.84
3097 3921 1.252015 GTCGAAGCATACGTAGCGTTG 59.748 52.381 0.08 7.48 41.54 4.10
3098 3922 1.135603 TCGAAGCATACGTAGCGTTGT 60.136 47.619 0.08 0.00 41.54 3.32
3099 3923 1.252015 CGAAGCATACGTAGCGTTGTC 59.748 52.381 0.08 3.19 41.54 3.18
3100 3924 2.256174 GAAGCATACGTAGCGTTGTCA 58.744 47.619 0.08 0.00 41.54 3.58
3101 3925 2.579207 AGCATACGTAGCGTTGTCAT 57.421 45.000 0.08 0.00 41.54 3.06
3102 3926 2.888594 AGCATACGTAGCGTTGTCATT 58.111 42.857 0.08 0.00 41.54 2.57
3103 3927 2.858344 AGCATACGTAGCGTTGTCATTC 59.142 45.455 0.08 0.00 41.54 2.67
3104 3928 2.858344 GCATACGTAGCGTTGTCATTCT 59.142 45.455 0.08 0.00 41.54 2.40
3105 3929 3.301835 GCATACGTAGCGTTGTCATTCTG 60.302 47.826 0.08 0.00 41.54 3.02
3106 3930 1.710013 ACGTAGCGTTGTCATTCTGG 58.290 50.000 0.00 0.00 36.35 3.86
3107 3931 1.000506 ACGTAGCGTTGTCATTCTGGT 59.999 47.619 0.00 0.00 36.35 4.00
3108 3932 1.654105 CGTAGCGTTGTCATTCTGGTC 59.346 52.381 0.00 0.00 0.00 4.02
3109 3933 1.654105 GTAGCGTTGTCATTCTGGTCG 59.346 52.381 0.00 0.00 0.00 4.79
3110 3934 1.132640 GCGTTGTCATTCTGGTCGC 59.867 57.895 0.00 0.00 35.86 5.19
3111 3935 1.416049 CGTTGTCATTCTGGTCGCG 59.584 57.895 0.00 0.00 0.00 5.87
3112 3936 1.006825 CGTTGTCATTCTGGTCGCGA 61.007 55.000 3.71 3.71 0.00 5.87
3113 3937 1.144969 GTTGTCATTCTGGTCGCGAA 58.855 50.000 12.06 0.00 0.00 4.70
3114 3938 1.136336 GTTGTCATTCTGGTCGCGAAC 60.136 52.381 19.40 19.40 0.00 3.95
3115 3939 1.006825 TGTCATTCTGGTCGCGAACG 61.007 55.000 20.86 14.41 42.01 3.95
3116 3940 1.007336 GTCATTCTGGTCGCGAACGT 61.007 55.000 20.86 2.21 41.18 3.99
3117 3941 1.006825 TCATTCTGGTCGCGAACGTG 61.007 55.000 20.86 14.98 41.18 4.49
3118 3942 1.006571 ATTCTGGTCGCGAACGTGT 60.007 52.632 20.86 2.20 41.18 4.49
3119 3943 0.241749 ATTCTGGTCGCGAACGTGTA 59.758 50.000 20.86 9.15 41.18 2.90
3120 3944 0.661187 TTCTGGTCGCGAACGTGTAC 60.661 55.000 20.86 0.83 41.18 2.90
3121 3945 2.423031 CTGGTCGCGAACGTGTACG 61.423 63.158 20.86 2.43 46.33 3.67
3136 3960 4.790878 CGTGTACGTGCATATATACTGGT 58.209 43.478 10.21 0.00 34.11 4.00
3137 3961 4.615541 CGTGTACGTGCATATATACTGGTG 59.384 45.833 10.21 0.00 34.11 4.17
3138 3962 4.921515 GTGTACGTGCATATATACTGGTGG 59.078 45.833 10.21 0.00 0.00 4.61
3139 3963 4.828387 TGTACGTGCATATATACTGGTGGA 59.172 41.667 0.82 0.00 0.00 4.02
3140 3964 5.479027 TGTACGTGCATATATACTGGTGGAT 59.521 40.000 0.82 0.00 0.00 3.41
3141 3965 4.820897 ACGTGCATATATACTGGTGGATG 58.179 43.478 0.00 0.00 0.00 3.51
3142 3966 4.283467 ACGTGCATATATACTGGTGGATGT 59.717 41.667 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.957395 CAAGCAGCTCACGGGAATGT 60.957 55.000 0.00 0.00 0.00 2.71
11 12 0.957395 CACAAGCAGCTCACGGGAAT 60.957 55.000 0.00 0.00 0.00 3.01
13 14 2.031012 CACAAGCAGCTCACGGGA 59.969 61.111 0.00 0.00 0.00 5.14
18 19 0.586319 GCGTAAACACAAGCAGCTCA 59.414 50.000 0.00 0.00 0.00 4.26
35 36 3.126171 TGAACAGAAAAACGATATGGGCG 59.874 43.478 0.00 0.00 0.00 6.13
107 109 8.921353 TGTGGGTTAGTAAGCACTAATTAAAA 57.079 30.769 13.76 0.00 46.32 1.52
112 114 6.717289 TCAATGTGGGTTAGTAAGCACTAAT 58.283 36.000 13.76 0.00 46.32 1.73
121 123 4.383335 GGGATCGTTCAATGTGGGTTAGTA 60.383 45.833 0.00 0.00 0.00 1.82
148 150 3.887110 GGACCAGATGCATTCATTCATCA 59.113 43.478 0.00 0.00 41.02 3.07
176 178 0.617249 CTCTGCTCTGTCCTCCCCTT 60.617 60.000 0.00 0.00 0.00 3.95
185 187 2.035632 GTATGCCCTACTCTGCTCTGT 58.964 52.381 0.00 0.00 0.00 3.41
211 213 8.193438 GCAGGCAAAAGTATATGAGAAAGAAAT 58.807 33.333 0.00 0.00 0.00 2.17
220 222 5.945784 ACTTGAAGCAGGCAAAAGTATATGA 59.054 36.000 0.00 0.00 29.56 2.15
262 264 9.784531 CAAAAAGGAGATTAGCCTCTAATGATA 57.215 33.333 4.03 0.00 33.76 2.15
411 414 2.180276 GGGGAGAGCAGAGTCACTTAA 58.820 52.381 0.00 0.00 0.00 1.85
486 499 5.730550 AGAAATATAGTGCAGGACGAAACA 58.269 37.500 0.00 0.00 0.00 2.83
539 552 1.005340 CTTGTGCTGCTGCTACTAGC 58.995 55.000 17.00 0.61 43.95 3.42
571 585 5.237996 TCTTTGCACAAGTGAGAAATCTGAG 59.762 40.000 4.04 0.00 0.00 3.35
789 818 5.175491 CACATTACTGGACAAAAATGCACAC 59.825 40.000 0.00 0.00 33.57 3.82
955 1004 5.751243 ATTGTATTTACAGAATGGGACGC 57.249 39.130 0.00 0.00 43.62 5.19
1334 1469 5.406477 TCTGAAGCTATGCATTATAGTTGCG 59.594 40.000 3.54 0.00 43.10 4.85
1380 1518 6.236409 CCCAGTATCTGTCATGCATAGAAAT 58.764 40.000 0.00 0.00 0.00 2.17
1384 1522 3.326006 ACCCCAGTATCTGTCATGCATAG 59.674 47.826 0.00 0.00 0.00 2.23
1503 1798 8.982091 ACTAGATAGATAACACTACTGAAGCA 57.018 34.615 0.00 0.00 0.00 3.91
1544 2071 7.577303 AGCATCCTAGATGAAAGAATTACCAA 58.423 34.615 8.74 0.00 0.00 3.67
1683 2500 5.010282 AGGTGCCTAAAGTTGTAAGGAATG 58.990 41.667 3.87 0.00 31.64 2.67
1709 2526 3.778629 GGTCCCCTCCTTGTGTAAATAGA 59.221 47.826 0.00 0.00 0.00 1.98
1744 2561 0.388649 GGAGACAATGTCACGAGCGT 60.389 55.000 16.38 0.00 34.60 5.07
1745 2562 1.078759 GGGAGACAATGTCACGAGCG 61.079 60.000 16.38 0.00 34.60 5.03
1751 2568 3.940852 CGAATCAATGGGAGACAATGTCA 59.059 43.478 16.38 0.00 34.60 3.58
1756 2573 3.000041 CGAACGAATCAATGGGAGACAA 59.000 45.455 0.00 0.00 0.00 3.18
1800 2617 2.035449 TGTTGGACGAGACGTGAAGAAT 59.965 45.455 0.00 0.00 41.37 2.40
1816 2633 3.721087 AGGATGGTCCTTACTTGTTGG 57.279 47.619 0.00 0.00 46.91 3.77
1859 2677 7.889589 ATTTTCTTACTTTTTAGCACATGCC 57.110 32.000 0.00 0.00 43.38 4.40
1901 2720 3.454371 AACTTGTTAGTGCTCGTCAGT 57.546 42.857 0.00 0.00 34.01 3.41
2055 2874 4.470170 TCGGGCGTCACGATCACG 62.470 66.667 0.00 0.00 45.75 4.35
2345 3164 3.037549 GGATGAAGATGAGAGACACCCT 58.962 50.000 0.00 0.00 0.00 4.34
2346 3165 2.768527 TGGATGAAGATGAGAGACACCC 59.231 50.000 0.00 0.00 0.00 4.61
2444 3268 6.746120 ACCCACGCTACTAATAACAGAATAG 58.254 40.000 0.00 0.00 0.00 1.73
2449 3273 9.784680 CTATTATACCCACGCTACTAATAACAG 57.215 37.037 0.00 0.00 0.00 3.16
2450 3274 9.300681 ACTATTATACCCACGCTACTAATAACA 57.699 33.333 0.00 0.00 0.00 2.41
2453 3277 8.246180 GCAACTATTATACCCACGCTACTAATA 58.754 37.037 0.00 0.00 0.00 0.98
2454 3278 7.095270 GCAACTATTATACCCACGCTACTAAT 58.905 38.462 0.00 0.00 0.00 1.73
2455 3279 6.449698 GCAACTATTATACCCACGCTACTAA 58.550 40.000 0.00 0.00 0.00 2.24
2456 3280 5.335113 CGCAACTATTATACCCACGCTACTA 60.335 44.000 0.00 0.00 0.00 1.82
2457 3281 4.558095 CGCAACTATTATACCCACGCTACT 60.558 45.833 0.00 0.00 0.00 2.57
2458 3282 3.671928 CGCAACTATTATACCCACGCTAC 59.328 47.826 0.00 0.00 0.00 3.58
2459 3283 3.858129 GCGCAACTATTATACCCACGCTA 60.858 47.826 0.30 0.00 40.57 4.26
2460 3284 2.750948 CGCAACTATTATACCCACGCT 58.249 47.619 0.00 0.00 0.00 5.07
2461 3285 1.193874 GCGCAACTATTATACCCACGC 59.806 52.381 0.30 0.00 36.82 5.34
2462 3286 2.750948 AGCGCAACTATTATACCCACG 58.249 47.619 11.47 0.00 0.00 4.94
2463 3287 4.879598 AGTAGCGCAACTATTATACCCAC 58.120 43.478 11.47 0.00 32.15 4.61
2464 3288 5.771666 AGTAGTAGCGCAACTATTATACCCA 59.228 40.000 11.47 0.00 34.59 4.51
2465 3289 6.264841 AGTAGTAGCGCAACTATTATACCC 57.735 41.667 11.47 0.00 34.59 3.69
2480 3304 4.564940 ACCACACGCTAATAGTAGTAGC 57.435 45.455 17.63 17.63 40.53 3.58
2483 3307 9.512588 ACTATTATACCACACGCTAATAGTAGT 57.487 33.333 10.52 0.00 41.84 2.73
2490 3314 4.741185 CGCAACTATTATACCACACGCTAA 59.259 41.667 0.00 0.00 0.00 3.09
2509 3333 8.627403 ACTAATAACAGAATAGTAGTAGCGCAA 58.373 33.333 11.47 0.00 35.55 4.85
2566 3390 0.536687 TAGTAGTAGCGCGGATGCCT 60.537 55.000 8.83 0.00 38.08 4.75
2617 3441 7.470900 CGCTACAGCTAAAAGTTAGTAGTAGT 58.529 38.462 18.95 7.42 39.32 2.73
2666 3490 4.903649 GGGTAAATTGGCTACTAGTAGGGA 59.096 45.833 27.24 0.00 33.87 4.20
2668 3492 4.798593 GCGGGTAAATTGGCTACTAGTAGG 60.799 50.000 27.24 12.18 33.87 3.18
2721 3545 1.448013 GGTTAGCCTCTCCACGCAC 60.448 63.158 0.00 0.00 0.00 5.34
2722 3546 2.978824 GGTTAGCCTCTCCACGCA 59.021 61.111 0.00 0.00 0.00 5.24
2723 3547 2.202756 CGGTTAGCCTCTCCACGC 60.203 66.667 0.00 0.00 0.00 5.34
2724 3548 0.736325 CAACGGTTAGCCTCTCCACG 60.736 60.000 0.00 0.00 0.00 4.94
2725 3549 0.391263 CCAACGGTTAGCCTCTCCAC 60.391 60.000 0.00 0.00 0.00 4.02
2726 3550 1.550130 CCCAACGGTTAGCCTCTCCA 61.550 60.000 0.00 0.00 0.00 3.86
2727 3551 1.221021 CCCAACGGTTAGCCTCTCC 59.779 63.158 0.00 0.00 0.00 3.71
2728 3552 0.108281 GACCCAACGGTTAGCCTCTC 60.108 60.000 0.00 0.00 44.88 3.20
2729 3553 1.551019 GGACCCAACGGTTAGCCTCT 61.551 60.000 0.00 0.00 44.88 3.69
2730 3554 1.078637 GGACCCAACGGTTAGCCTC 60.079 63.158 0.00 0.00 44.88 4.70
2731 3555 1.205460 ATGGACCCAACGGTTAGCCT 61.205 55.000 0.00 0.00 44.88 4.58
2732 3556 1.029947 CATGGACCCAACGGTTAGCC 61.030 60.000 0.00 0.00 44.88 3.93
2733 3557 1.029947 CCATGGACCCAACGGTTAGC 61.030 60.000 5.56 0.00 44.88 3.09
2734 3558 1.029947 GCCATGGACCCAACGGTTAG 61.030 60.000 18.40 0.00 44.88 2.34
2735 3559 1.001887 GCCATGGACCCAACGGTTA 60.002 57.895 18.40 0.00 44.88 2.85
2736 3560 2.282887 GCCATGGACCCAACGGTT 60.283 61.111 18.40 0.00 44.88 4.44
2741 3565 4.738998 CTGCGGCCATGGACCCAA 62.739 66.667 18.40 0.00 0.00 4.12
2745 3569 3.818787 CTTGCTGCGGCCATGGAC 61.819 66.667 18.40 13.35 37.74 4.02
2748 3572 3.060020 CTTCCTTGCTGCGGCCATG 62.060 63.158 16.57 0.52 37.74 3.66
2749 3573 2.753043 CTTCCTTGCTGCGGCCAT 60.753 61.111 16.57 0.00 37.74 4.40
2750 3574 4.269523 ACTTCCTTGCTGCGGCCA 62.270 61.111 16.57 2.23 37.74 5.36
2751 3575 3.741476 CACTTCCTTGCTGCGGCC 61.741 66.667 16.57 0.00 37.74 6.13
2752 3576 4.410743 GCACTTCCTTGCTGCGGC 62.411 66.667 11.65 11.65 39.59 6.53
2753 3577 3.741476 GGCACTTCCTTGCTGCGG 61.741 66.667 0.00 0.00 42.56 5.69
2754 3578 2.670934 AGGCACTTCCTTGCTGCG 60.671 61.111 0.00 0.00 44.75 5.18
2762 3586 2.210961 GCGTAATAAGGAGGCACTTCC 58.789 52.381 0.00 0.00 41.55 3.46
2763 3587 1.859080 CGCGTAATAAGGAGGCACTTC 59.141 52.381 0.00 0.00 41.55 3.01
2764 3588 1.935933 CGCGTAATAAGGAGGCACTT 58.064 50.000 0.00 0.27 41.55 3.16
2766 3590 0.808453 TGCGCGTAATAAGGAGGCAC 60.808 55.000 8.43 0.00 0.00 5.01
2767 3591 0.108089 TTGCGCGTAATAAGGAGGCA 60.108 50.000 5.23 0.00 0.00 4.75
2768 3592 1.011333 TTTGCGCGTAATAAGGAGGC 58.989 50.000 11.23 0.00 0.00 4.70
2769 3593 3.963383 ATTTTGCGCGTAATAAGGAGG 57.037 42.857 11.23 0.00 0.00 4.30
2770 3594 9.607285 AATAATTATTTTGCGCGTAATAAGGAG 57.393 29.630 22.71 0.00 31.76 3.69
2771 3595 9.601971 GAATAATTATTTTGCGCGTAATAAGGA 57.398 29.630 22.71 16.41 31.76 3.36
2772 3596 8.846607 GGAATAATTATTTTGCGCGTAATAAGG 58.153 33.333 22.71 0.00 31.76 2.69
2773 3597 9.607285 AGGAATAATTATTTTGCGCGTAATAAG 57.393 29.630 22.71 0.00 31.76 1.73
2774 3598 9.601971 GAGGAATAATTATTTTGCGCGTAATAA 57.398 29.630 21.46 21.46 32.52 1.40
2775 3599 8.231837 GGAGGAATAATTATTTTGCGCGTAATA 58.768 33.333 11.23 6.49 0.00 0.98
2776 3600 7.081976 GGAGGAATAATTATTTTGCGCGTAAT 58.918 34.615 11.23 9.25 0.00 1.89
2777 3601 6.038382 TGGAGGAATAATTATTTTGCGCGTAA 59.962 34.615 11.92 5.23 0.00 3.18
2778 3602 5.527951 TGGAGGAATAATTATTTTGCGCGTA 59.472 36.000 11.92 0.00 0.00 4.42
2779 3603 4.336993 TGGAGGAATAATTATTTTGCGCGT 59.663 37.500 11.92 1.18 0.00 6.01
2780 3604 4.675114 GTGGAGGAATAATTATTTTGCGCG 59.325 41.667 11.92 0.00 0.00 6.86
2781 3605 4.982295 GGTGGAGGAATAATTATTTTGCGC 59.018 41.667 11.92 13.60 0.00 6.09
2782 3606 6.039270 TCAGGTGGAGGAATAATTATTTTGCG 59.961 38.462 11.92 0.00 0.00 4.85
2783 3607 7.147915 TGTCAGGTGGAGGAATAATTATTTTGC 60.148 37.037 11.92 9.42 0.00 3.68
2784 3608 8.292444 TGTCAGGTGGAGGAATAATTATTTTG 57.708 34.615 11.92 2.73 0.00 2.44
2785 3609 7.068716 GCTGTCAGGTGGAGGAATAATTATTTT 59.931 37.037 11.92 4.32 0.00 1.82
2786 3610 6.547510 GCTGTCAGGTGGAGGAATAATTATTT 59.452 38.462 11.92 0.00 0.00 1.40
2787 3611 6.064717 GCTGTCAGGTGGAGGAATAATTATT 58.935 40.000 10.51 10.51 0.00 1.40
2788 3612 5.625150 GCTGTCAGGTGGAGGAATAATTAT 58.375 41.667 1.14 0.00 0.00 1.28
2789 3613 4.442893 CGCTGTCAGGTGGAGGAATAATTA 60.443 45.833 1.14 0.00 0.00 1.40
2790 3614 3.682718 CGCTGTCAGGTGGAGGAATAATT 60.683 47.826 1.14 0.00 0.00 1.40
2791 3615 2.158900 CGCTGTCAGGTGGAGGAATAAT 60.159 50.000 1.14 0.00 0.00 1.28
2792 3616 1.207089 CGCTGTCAGGTGGAGGAATAA 59.793 52.381 1.14 0.00 0.00 1.40
2793 3617 0.824109 CGCTGTCAGGTGGAGGAATA 59.176 55.000 1.14 0.00 0.00 1.75
2794 3618 1.599047 CGCTGTCAGGTGGAGGAAT 59.401 57.895 1.14 0.00 0.00 3.01
2795 3619 2.583441 CCGCTGTCAGGTGGAGGAA 61.583 63.158 1.14 0.00 39.04 3.36
2796 3620 2.997315 CCGCTGTCAGGTGGAGGA 60.997 66.667 1.14 0.00 39.04 3.71
2797 3621 4.087892 CCCGCTGTCAGGTGGAGG 62.088 72.222 1.14 0.00 39.04 4.30
2798 3622 4.087892 CCCCGCTGTCAGGTGGAG 62.088 72.222 1.14 0.00 39.04 3.86
2799 3623 4.631740 TCCCCGCTGTCAGGTGGA 62.632 66.667 1.14 0.00 39.04 4.02
2800 3624 4.394712 GTCCCCGCTGTCAGGTGG 62.395 72.222 1.14 0.00 36.69 4.61
2801 3625 4.394712 GGTCCCCGCTGTCAGGTG 62.395 72.222 1.14 0.00 0.00 4.00
2804 3628 4.394712 GTGGGTCCCCGCTGTCAG 62.395 72.222 5.13 0.00 42.89 3.51
2859 3683 3.721706 GTCCCAGCAGTCAGGGGG 61.722 72.222 0.00 0.00 45.51 5.40
2860 3684 3.721706 GGTCCCAGCAGTCAGGGG 61.722 72.222 0.00 0.00 45.51 4.79
2861 3685 3.721706 GGGTCCCAGCAGTCAGGG 61.722 72.222 1.78 0.00 46.90 4.45
2862 3686 2.930019 TGGGTCCCAGCAGTCAGG 60.930 66.667 6.47 0.00 0.00 3.86
2863 3687 2.348998 GTGGGTCCCAGCAGTCAG 59.651 66.667 12.21 0.00 32.34 3.51
2871 3695 2.205749 TGTAGCTGGTGGGTCCCA 59.794 61.111 6.47 6.47 34.77 4.37
2872 3696 2.669240 GTGTAGCTGGTGGGTCCC 59.331 66.667 0.00 0.00 34.77 4.46
2873 3697 1.489560 AAGGTGTAGCTGGTGGGTCC 61.490 60.000 0.00 0.00 0.00 4.46
2874 3698 0.036294 GAAGGTGTAGCTGGTGGGTC 60.036 60.000 0.00 0.00 0.00 4.46
2875 3699 1.827399 CGAAGGTGTAGCTGGTGGGT 61.827 60.000 0.00 0.00 0.00 4.51
2876 3700 1.079127 CGAAGGTGTAGCTGGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
2877 3701 1.741770 GCGAAGGTGTAGCTGGTGG 60.742 63.158 0.00 0.00 0.00 4.61
2878 3702 1.005037 TGCGAAGGTGTAGCTGGTG 60.005 57.895 0.00 0.00 0.00 4.17
2879 3703 1.004918 GTGCGAAGGTGTAGCTGGT 60.005 57.895 0.00 0.00 0.00 4.00
2880 3704 2.094659 CGTGCGAAGGTGTAGCTGG 61.095 63.158 0.00 0.00 0.00 4.85
2881 3705 2.730672 GCGTGCGAAGGTGTAGCTG 61.731 63.158 0.00 0.00 0.00 4.24
2882 3706 2.432628 GCGTGCGAAGGTGTAGCT 60.433 61.111 0.00 0.00 0.00 3.32
2883 3707 2.227968 CTTGCGTGCGAAGGTGTAGC 62.228 60.000 0.00 0.00 0.00 3.58
2884 3708 1.626654 CCTTGCGTGCGAAGGTGTAG 61.627 60.000 12.19 0.00 36.05 2.74
2885 3709 1.666553 CCTTGCGTGCGAAGGTGTA 60.667 57.895 12.19 0.00 36.05 2.90
2886 3710 2.933878 TTCCTTGCGTGCGAAGGTGT 62.934 55.000 16.96 0.00 40.88 4.16
2887 3711 2.175184 CTTCCTTGCGTGCGAAGGTG 62.175 60.000 16.96 10.80 40.88 4.00
2888 3712 1.961277 CTTCCTTGCGTGCGAAGGT 60.961 57.895 16.96 0.00 40.88 3.50
2889 3713 1.961277 ACTTCCTTGCGTGCGAAGG 60.961 57.895 13.50 13.50 41.36 3.46
2890 3714 1.205064 CACTTCCTTGCGTGCGAAG 59.795 57.895 6.47 6.47 39.13 3.79
2891 3715 2.892334 GCACTTCCTTGCGTGCGAA 61.892 57.895 0.00 0.00 45.74 4.70
2892 3716 3.345808 GCACTTCCTTGCGTGCGA 61.346 61.111 0.00 0.00 45.74 5.10
2898 3722 3.423154 CCGGACGCACTTCCTTGC 61.423 66.667 0.00 0.00 39.28 4.01
2899 3723 2.742372 CCCGGACGCACTTCCTTG 60.742 66.667 0.73 0.00 32.88 3.61
2900 3724 4.699522 GCCCGGACGCACTTCCTT 62.700 66.667 0.73 0.00 32.88 3.36
2903 3727 2.065906 TTTTTGCCCGGACGCACTTC 62.066 55.000 0.73 0.00 38.83 3.01
2904 3728 2.122167 TTTTTGCCCGGACGCACTT 61.122 52.632 0.73 0.00 38.83 3.16
2905 3729 2.517402 TTTTTGCCCGGACGCACT 60.517 55.556 0.73 0.00 38.83 4.40
2933 3757 3.721706 GTCCCAGCAGTCAGGGGG 61.722 72.222 0.00 0.00 45.51 5.40
2934 3758 3.721706 GGTCCCAGCAGTCAGGGG 61.722 72.222 0.00 0.00 45.51 4.79
2935 3759 3.721706 GGGTCCCAGCAGTCAGGG 61.722 72.222 1.78 0.00 46.90 4.45
2936 3760 2.930019 TGGGTCCCAGCAGTCAGG 60.930 66.667 6.47 0.00 0.00 3.86
2937 3761 2.348998 GTGGGTCCCAGCAGTCAG 59.651 66.667 12.21 0.00 32.34 3.51
2945 3769 1.229820 ATGTAGCTGGTGGGTCCCA 60.230 57.895 6.47 6.47 34.77 4.37
2946 3770 0.983378 AGATGTAGCTGGTGGGTCCC 60.983 60.000 0.00 0.00 34.77 4.46
2947 3771 0.912486 AAGATGTAGCTGGTGGGTCC 59.088 55.000 0.00 0.00 0.00 4.46
2948 3772 1.471676 CGAAGATGTAGCTGGTGGGTC 60.472 57.143 0.00 0.00 0.00 4.46
2949 3773 0.537188 CGAAGATGTAGCTGGTGGGT 59.463 55.000 0.00 0.00 0.00 4.51
2950 3774 0.811616 GCGAAGATGTAGCTGGTGGG 60.812 60.000 0.00 0.00 0.00 4.61
2951 3775 0.108186 TGCGAAGATGTAGCTGGTGG 60.108 55.000 0.00 0.00 0.00 4.61
2952 3776 1.002366 GTGCGAAGATGTAGCTGGTG 58.998 55.000 0.00 0.00 0.00 4.17
2953 3777 0.458543 CGTGCGAAGATGTAGCTGGT 60.459 55.000 0.00 0.00 0.00 4.00
2954 3778 1.148157 CCGTGCGAAGATGTAGCTGG 61.148 60.000 0.00 0.00 0.00 4.85
2955 3779 0.179137 TCCGTGCGAAGATGTAGCTG 60.179 55.000 0.00 0.00 0.00 4.24
2956 3780 0.530744 TTCCGTGCGAAGATGTAGCT 59.469 50.000 0.00 0.00 0.00 3.32
2957 3781 3.044809 TTCCGTGCGAAGATGTAGC 57.955 52.632 0.00 0.00 0.00 3.58
2964 3788 1.901650 GCACTTCCTTCCGTGCGAAG 61.902 60.000 0.00 0.00 45.74 3.79
2965 3789 1.959226 GCACTTCCTTCCGTGCGAA 60.959 57.895 0.00 0.00 45.74 4.70
2966 3790 2.357034 GCACTTCCTTCCGTGCGA 60.357 61.111 0.00 0.00 45.74 5.10
2969 3793 1.860078 GAACGCACTTCCTTCCGTG 59.140 57.895 0.00 0.00 33.78 4.94
2970 3794 1.663702 CGAACGCACTTCCTTCCGT 60.664 57.895 0.00 0.00 35.14 4.69
2971 3795 2.380410 CCGAACGCACTTCCTTCCG 61.380 63.158 0.00 0.00 0.00 4.30
2972 3796 2.033194 CCCGAACGCACTTCCTTCC 61.033 63.158 0.00 0.00 0.00 3.46
2973 3797 2.677979 GCCCGAACGCACTTCCTTC 61.678 63.158 0.00 0.00 0.00 3.46
2974 3798 2.668550 GCCCGAACGCACTTCCTT 60.669 61.111 0.00 0.00 0.00 3.36
2975 3799 2.951475 TTTGCCCGAACGCACTTCCT 62.951 55.000 0.00 0.00 38.83 3.36
2976 3800 2.065906 TTTTGCCCGAACGCACTTCC 62.066 55.000 0.00 0.00 38.83 3.46
2977 3801 0.248702 TTTTTGCCCGAACGCACTTC 60.249 50.000 0.00 0.00 38.83 3.01
2978 3802 1.810532 TTTTTGCCCGAACGCACTT 59.189 47.368 0.00 0.00 38.83 3.16
2979 3803 3.515611 TTTTTGCCCGAACGCACT 58.484 50.000 0.00 0.00 38.83 4.40
2997 3821 1.713078 AGCAGTCAGGGGGAGATTTTT 59.287 47.619 0.00 0.00 0.00 1.94
2998 3822 1.005215 CAGCAGTCAGGGGGAGATTTT 59.995 52.381 0.00 0.00 0.00 1.82
2999 3823 0.622665 CAGCAGTCAGGGGGAGATTT 59.377 55.000 0.00 0.00 0.00 2.17
3000 3824 1.277580 CCAGCAGTCAGGGGGAGATT 61.278 60.000 0.00 0.00 0.00 2.40
3001 3825 1.692042 CCAGCAGTCAGGGGGAGAT 60.692 63.158 0.00 0.00 0.00 2.75
3002 3826 2.284921 CCAGCAGTCAGGGGGAGA 60.285 66.667 0.00 0.00 0.00 3.71
3003 3827 3.406200 CCCAGCAGTCAGGGGGAG 61.406 72.222 0.00 0.00 43.57 4.30
3005 3829 3.721706 GTCCCAGCAGTCAGGGGG 61.722 72.222 0.00 0.00 45.51 5.40
3006 3830 3.721706 GGTCCCAGCAGTCAGGGG 61.722 72.222 0.00 0.00 45.51 4.79
3007 3831 3.721706 GGGTCCCAGCAGTCAGGG 61.722 72.222 1.78 0.00 46.90 4.45
3008 3832 2.930019 TGGGTCCCAGCAGTCAGG 60.930 66.667 6.47 0.00 0.00 3.86
3009 3833 2.348998 GTGGGTCCCAGCAGTCAG 59.651 66.667 12.21 0.00 32.34 3.51
3016 3840 0.991920 ATGTAGTTGGTGGGTCCCAG 59.008 55.000 12.21 0.00 35.49 4.45
3017 3841 0.988832 GATGTAGTTGGTGGGTCCCA 59.011 55.000 6.47 6.47 34.77 4.37
3018 3842 1.286248 AGATGTAGTTGGTGGGTCCC 58.714 55.000 0.00 0.00 34.77 4.46
3019 3843 2.677037 CGAAGATGTAGTTGGTGGGTCC 60.677 54.545 0.00 0.00 0.00 4.46
3020 3844 2.618053 CGAAGATGTAGTTGGTGGGTC 58.382 52.381 0.00 0.00 0.00 4.46
3021 3845 1.338769 GCGAAGATGTAGTTGGTGGGT 60.339 52.381 0.00 0.00 0.00 4.51
3022 3846 1.338674 TGCGAAGATGTAGTTGGTGGG 60.339 52.381 0.00 0.00 0.00 4.61
3023 3847 2.002586 CTGCGAAGATGTAGTTGGTGG 58.997 52.381 0.00 0.00 0.00 4.61
3024 3848 2.002586 CCTGCGAAGATGTAGTTGGTG 58.997 52.381 0.00 0.00 0.00 4.17
3025 3849 1.676014 GCCTGCGAAGATGTAGTTGGT 60.676 52.381 0.00 0.00 0.00 3.67
3026 3850 1.009829 GCCTGCGAAGATGTAGTTGG 58.990 55.000 0.00 0.00 0.00 3.77
3027 3851 1.725641 TGCCTGCGAAGATGTAGTTG 58.274 50.000 0.00 0.00 0.00 3.16
3028 3852 2.350522 CTTGCCTGCGAAGATGTAGTT 58.649 47.619 0.00 0.00 0.00 2.24
3029 3853 1.406069 CCTTGCCTGCGAAGATGTAGT 60.406 52.381 0.00 0.00 0.00 2.73
3030 3854 1.134699 TCCTTGCCTGCGAAGATGTAG 60.135 52.381 0.00 0.00 0.00 2.74
3031 3855 0.901827 TCCTTGCCTGCGAAGATGTA 59.098 50.000 0.00 0.00 0.00 2.29
3032 3856 0.036732 TTCCTTGCCTGCGAAGATGT 59.963 50.000 0.00 0.00 0.00 3.06
3033 3857 0.731417 CTTCCTTGCCTGCGAAGATG 59.269 55.000 0.00 0.00 35.99 2.90
3034 3858 0.326264 ACTTCCTTGCCTGCGAAGAT 59.674 50.000 10.80 0.00 37.14 2.40
3035 3859 0.603707 CACTTCCTTGCCTGCGAAGA 60.604 55.000 10.80 0.00 37.14 2.87
3036 3860 1.871772 CACTTCCTTGCCTGCGAAG 59.128 57.895 0.00 4.41 39.13 3.79
3037 3861 2.260869 GCACTTCCTTGCCTGCGAA 61.261 57.895 0.00 0.00 36.42 4.70
3038 3862 2.669569 GCACTTCCTTGCCTGCGA 60.670 61.111 0.00 0.00 36.42 5.10
3044 3868 0.536006 ACTGTCAGGCACTTCCTTGC 60.536 55.000 4.53 0.00 44.75 4.01
3045 3869 1.517242 GACTGTCAGGCACTTCCTTG 58.483 55.000 0.00 0.00 44.75 3.61
3046 3870 0.034059 CGACTGTCAGGCACTTCCTT 59.966 55.000 6.49 0.00 44.75 3.36
3048 3872 1.374758 CCGACTGTCAGGCACTTCC 60.375 63.158 6.49 0.00 34.60 3.46
3049 3873 1.374758 CCCGACTGTCAGGCACTTC 60.375 63.158 6.49 0.00 34.60 3.01
3050 3874 1.837051 TCCCGACTGTCAGGCACTT 60.837 57.895 6.49 0.00 34.60 3.16
3051 3875 2.203640 TCCCGACTGTCAGGCACT 60.204 61.111 6.49 0.00 43.88 4.40
3052 3876 2.048127 GTCCCGACTGTCAGGCAC 60.048 66.667 6.49 3.07 0.00 5.01
3053 3877 3.311110 GGTCCCGACTGTCAGGCA 61.311 66.667 6.49 0.00 0.00 4.75
3054 3878 4.083862 GGGTCCCGACTGTCAGGC 62.084 72.222 8.73 0.00 0.00 4.85
3055 3879 2.603473 TGGGTCCCGACTGTCAGG 60.603 66.667 8.73 6.14 0.00 3.86
3056 3880 2.657237 GTGGGTCCCGACTGTCAG 59.343 66.667 8.73 0.00 0.00 3.51
3057 3881 2.920912 GGTGGGTCCCGACTGTCA 60.921 66.667 8.73 0.00 0.00 3.58
3058 3882 2.603776 AGGTGGGTCCCGACTGTC 60.604 66.667 2.65 0.00 36.75 3.51
3059 3883 2.923035 CAGGTGGGTCCCGACTGT 60.923 66.667 18.94 3.03 36.75 3.55
3060 3884 3.706373 CCAGGTGGGTCCCGACTG 61.706 72.222 19.85 19.85 36.75 3.51
3069 3893 0.462047 GTATGCTTCGACCAGGTGGG 60.462 60.000 0.00 0.00 44.81 4.61
3070 3894 0.806102 CGTATGCTTCGACCAGGTGG 60.806 60.000 0.00 0.00 42.17 4.61
3071 3895 0.108804 ACGTATGCTTCGACCAGGTG 60.109 55.000 0.00 0.00 0.00 4.00
3072 3896 1.404391 CTACGTATGCTTCGACCAGGT 59.596 52.381 0.00 0.00 0.00 4.00
3073 3897 1.864435 GCTACGTATGCTTCGACCAGG 60.864 57.143 0.00 0.00 0.00 4.45
3074 3898 1.478137 GCTACGTATGCTTCGACCAG 58.522 55.000 0.00 0.00 0.00 4.00
3075 3899 0.248336 CGCTACGTATGCTTCGACCA 60.248 55.000 12.88 0.00 0.00 4.02
3076 3900 0.248377 ACGCTACGTATGCTTCGACC 60.248 55.000 12.88 0.00 38.73 4.79
3077 3901 1.252015 CAACGCTACGTATGCTTCGAC 59.748 52.381 12.88 0.00 39.99 4.20
3078 3902 1.135603 ACAACGCTACGTATGCTTCGA 60.136 47.619 12.88 0.00 39.99 3.71
3079 3903 1.252015 GACAACGCTACGTATGCTTCG 59.748 52.381 12.88 7.33 39.99 3.79
3080 3904 2.256174 TGACAACGCTACGTATGCTTC 58.744 47.619 12.88 6.64 39.99 3.86
3081 3905 2.357327 TGACAACGCTACGTATGCTT 57.643 45.000 12.88 3.68 39.99 3.91
3082 3906 2.579207 ATGACAACGCTACGTATGCT 57.421 45.000 12.88 0.00 39.99 3.79
3083 3907 2.858344 AGAATGACAACGCTACGTATGC 59.142 45.455 0.00 1.22 39.99 3.14
3084 3908 3.242944 CCAGAATGACAACGCTACGTATG 59.757 47.826 0.00 0.00 37.44 2.39
3085 3909 3.119245 ACCAGAATGACAACGCTACGTAT 60.119 43.478 0.00 0.00 37.44 3.06
3086 3910 2.229543 ACCAGAATGACAACGCTACGTA 59.770 45.455 0.00 0.00 37.44 3.57
3087 3911 1.000506 ACCAGAATGACAACGCTACGT 59.999 47.619 0.00 0.00 39.88 3.57
3088 3912 1.654105 GACCAGAATGACAACGCTACG 59.346 52.381 0.00 0.00 39.69 3.51
3089 3913 1.654105 CGACCAGAATGACAACGCTAC 59.346 52.381 0.00 0.00 39.69 3.58
3090 3914 1.990799 CGACCAGAATGACAACGCTA 58.009 50.000 0.00 0.00 39.69 4.26
3091 3915 1.291877 GCGACCAGAATGACAACGCT 61.292 55.000 0.00 0.00 39.69 5.07
3092 3916 1.132640 GCGACCAGAATGACAACGC 59.867 57.895 0.00 0.00 39.69 4.84
3093 3917 1.006825 TCGCGACCAGAATGACAACG 61.007 55.000 3.71 0.00 39.69 4.10
3094 3918 1.136336 GTTCGCGACCAGAATGACAAC 60.136 52.381 9.15 0.00 39.69 3.32
3095 3919 1.144969 GTTCGCGACCAGAATGACAA 58.855 50.000 9.15 0.00 39.69 3.18
3096 3920 1.006825 CGTTCGCGACCAGAATGACA 61.007 55.000 9.15 0.00 44.71 3.58
3097 3921 1.007336 ACGTTCGCGACCAGAATGAC 61.007 55.000 9.15 0.00 44.71 3.06
3098 3922 1.006825 CACGTTCGCGACCAGAATGA 61.007 55.000 9.15 0.00 44.71 2.57
3099 3923 1.282248 ACACGTTCGCGACCAGAATG 61.282 55.000 9.15 0.96 44.71 2.67
3100 3924 0.241749 TACACGTTCGCGACCAGAAT 59.758 50.000 9.15 0.00 44.71 2.40
3101 3925 0.661187 GTACACGTTCGCGACCAGAA 60.661 55.000 9.15 0.00 44.71 3.02
3102 3926 1.081906 GTACACGTTCGCGACCAGA 60.082 57.895 9.15 0.00 44.71 3.86
3103 3927 2.423031 CGTACACGTTCGCGACCAG 61.423 63.158 9.15 5.61 44.71 4.00
3104 3928 2.427245 CGTACACGTTCGCGACCA 60.427 61.111 9.15 0.00 44.71 4.02
3114 3938 4.615541 CACCAGTATATATGCACGTACACG 59.384 45.833 3.52 0.00 46.33 4.49
3115 3939 4.921515 CCACCAGTATATATGCACGTACAC 59.078 45.833 3.52 0.00 0.00 2.90
3116 3940 4.828387 TCCACCAGTATATATGCACGTACA 59.172 41.667 3.52 0.00 0.00 2.90
3117 3941 5.381174 TCCACCAGTATATATGCACGTAC 57.619 43.478 3.52 0.00 0.00 3.67
3118 3942 5.479027 ACATCCACCAGTATATATGCACGTA 59.521 40.000 3.52 0.00 0.00 3.57
3119 3943 4.283467 ACATCCACCAGTATATATGCACGT 59.717 41.667 3.52 0.00 0.00 4.49
3120 3944 4.820897 ACATCCACCAGTATATATGCACG 58.179 43.478 3.52 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.