Multiple sequence alignment - TraesCS7B01G086900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G086900 chr7B 100.000 3091 0 0 1 3091 100334171 100331081 0.000000e+00 5709.0
1 TraesCS7B01G086900 chr7D 90.138 1663 101 22 1480 3091 136891906 136890256 0.000000e+00 2104.0
2 TraesCS7B01G086900 chr7D 86.340 1142 65 37 227 1327 136893130 136892039 0.000000e+00 1160.0
3 TraesCS7B01G086900 chr7D 84.219 621 59 21 2484 3091 136864581 136863987 4.470000e-158 568.0
4 TraesCS7B01G086900 chr7D 86.068 323 14 5 2633 2948 136925110 136925408 4.970000e-83 318.0
5 TraesCS7B01G086900 chr7D 91.781 146 11 1 1 145 136893320 136893175 5.230000e-48 202.0
6 TraesCS7B01G086900 chr7D 91.860 86 7 0 2835 2920 136794080 136793995 1.510000e-23 121.0
7 TraesCS7B01G086900 chr7D 84.466 103 11 2 2344 2446 136944152 136944249 2.540000e-16 97.1
8 TraesCS7B01G086900 chr7A 88.790 1677 108 31 1480 3091 136756445 136754784 0.000000e+00 1982.0
9 TraesCS7B01G086900 chr7A 83.296 904 49 35 475 1325 136757428 136756574 0.000000e+00 739.0
10 TraesCS7B01G086900 chr7A 82.479 605 55 27 2482 3068 136467263 136466692 1.670000e-132 483.0
11 TraesCS7B01G086900 chr7A 88.214 280 18 4 2632 2911 136536407 136536143 1.380000e-83 320.0
12 TraesCS7B01G086900 chr7A 89.011 91 4 1 2708 2798 136451695 136451611 1.170000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G086900 chr7B 100331081 100334171 3090 True 5709.000000 5709 100.000000 1 3091 1 chr7B.!!$R1 3090
1 TraesCS7B01G086900 chr7D 136890256 136893320 3064 True 1155.333333 2104 89.419667 1 3091 3 chr7D.!!$R3 3090
2 TraesCS7B01G086900 chr7D 136863987 136864581 594 True 568.000000 568 84.219000 2484 3091 1 chr7D.!!$R2 607
3 TraesCS7B01G086900 chr7A 136754784 136757428 2644 True 1360.500000 1982 86.043000 475 3091 2 chr7A.!!$R4 2616
4 TraesCS7B01G086900 chr7A 136466692 136467263 571 True 483.000000 483 82.479000 2482 3068 1 chr7A.!!$R2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 837 0.172352 CACTGACGAGGAGGAAGAGC 59.828 60.0 0.00 0.0 0.0 4.09 F
1393 1501 0.100861 GTGGTTTGTTTTTCGGCGGA 59.899 50.0 7.21 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2217 0.608035 TCGCCGGGAAGCATTTCTTT 60.608 50.000 2.18 0.00 34.56 2.52 R
2968 3194 1.200020 GTTGCACTATGCCCAAGTGAC 59.800 52.381 12.79 6.19 45.89 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.464714 ACTATATCTCATGTCGACAAACATTAC 57.535 33.333 24.13 0.00 37.78 1.89
86 87 8.792830 TTTACACCTTCCTAGTGGTATATCAT 57.207 34.615 0.00 0.00 39.63 2.45
102 103 1.213296 TCATGTAGCCTTCTTCCCCC 58.787 55.000 0.00 0.00 0.00 5.40
150 152 7.404671 TTTTAATAGTCAAATGCTTCCCTCC 57.595 36.000 0.00 0.00 0.00 4.30
152 154 2.797177 AGTCAAATGCTTCCCTCCTC 57.203 50.000 0.00 0.00 0.00 3.71
153 155 1.283321 AGTCAAATGCTTCCCTCCTCC 59.717 52.381 0.00 0.00 0.00 4.30
154 156 1.283321 GTCAAATGCTTCCCTCCTCCT 59.717 52.381 0.00 0.00 0.00 3.69
155 157 1.561542 TCAAATGCTTCCCTCCTCCTC 59.438 52.381 0.00 0.00 0.00 3.71
167 184 4.018415 TCCCTCCTCCTCCAAACATAAAAG 60.018 45.833 0.00 0.00 0.00 2.27
168 185 4.018415 CCCTCCTCCTCCAAACATAAAAGA 60.018 45.833 0.00 0.00 0.00 2.52
169 186 5.189180 CCTCCTCCTCCAAACATAAAAGAG 58.811 45.833 0.00 0.00 0.00 2.85
170 187 5.280727 CCTCCTCCTCCAAACATAAAAGAGT 60.281 44.000 0.00 0.00 0.00 3.24
171 188 5.805728 TCCTCCTCCAAACATAAAAGAGTC 58.194 41.667 0.00 0.00 0.00 3.36
172 189 4.944317 CCTCCTCCAAACATAAAAGAGTCC 59.056 45.833 0.00 0.00 0.00 3.85
173 190 5.514834 CCTCCTCCAAACATAAAAGAGTCCA 60.515 44.000 0.00 0.00 0.00 4.02
174 191 5.313712 TCCTCCAAACATAAAAGAGTCCAC 58.686 41.667 0.00 0.00 0.00 4.02
175 192 4.154195 CCTCCAAACATAAAAGAGTCCACG 59.846 45.833 0.00 0.00 0.00 4.94
176 193 4.069304 TCCAAACATAAAAGAGTCCACGG 58.931 43.478 0.00 0.00 0.00 4.94
177 194 3.818773 CCAAACATAAAAGAGTCCACGGT 59.181 43.478 0.00 0.00 0.00 4.83
178 195 4.320202 CCAAACATAAAAGAGTCCACGGTG 60.320 45.833 0.00 0.00 0.00 4.94
179 196 2.423577 ACATAAAAGAGTCCACGGTGC 58.576 47.619 1.68 0.00 0.00 5.01
180 197 2.038557 ACATAAAAGAGTCCACGGTGCT 59.961 45.455 1.68 0.00 0.00 4.40
181 198 2.922740 TAAAAGAGTCCACGGTGCTT 57.077 45.000 1.68 0.00 0.00 3.91
182 199 1.594331 AAAAGAGTCCACGGTGCTTC 58.406 50.000 1.68 0.00 0.00 3.86
183 200 0.468226 AAAGAGTCCACGGTGCTTCA 59.532 50.000 1.68 0.00 0.00 3.02
184 201 0.468226 AAGAGTCCACGGTGCTTCAA 59.532 50.000 1.68 0.00 0.00 2.69
185 202 0.468226 AGAGTCCACGGTGCTTCAAA 59.532 50.000 1.68 0.00 0.00 2.69
186 203 1.134220 AGAGTCCACGGTGCTTCAAAA 60.134 47.619 1.68 0.00 0.00 2.44
187 204 1.673920 GAGTCCACGGTGCTTCAAAAA 59.326 47.619 1.68 0.00 0.00 1.94
188 205 2.293399 GAGTCCACGGTGCTTCAAAAAT 59.707 45.455 1.68 0.00 0.00 1.82
189 206 3.482436 AGTCCACGGTGCTTCAAAAATA 58.518 40.909 1.68 0.00 0.00 1.40
190 207 3.886505 AGTCCACGGTGCTTCAAAAATAA 59.113 39.130 1.68 0.00 0.00 1.40
191 208 4.339814 AGTCCACGGTGCTTCAAAAATAAA 59.660 37.500 1.68 0.00 0.00 1.40
192 209 5.010617 AGTCCACGGTGCTTCAAAAATAAAT 59.989 36.000 1.68 0.00 0.00 1.40
193 210 6.207810 AGTCCACGGTGCTTCAAAAATAAATA 59.792 34.615 1.68 0.00 0.00 1.40
194 211 7.033185 GTCCACGGTGCTTCAAAAATAAATAT 58.967 34.615 1.68 0.00 0.00 1.28
195 212 7.009174 GTCCACGGTGCTTCAAAAATAAATATG 59.991 37.037 1.68 0.00 0.00 1.78
196 213 7.032580 CCACGGTGCTTCAAAAATAAATATGA 58.967 34.615 1.68 0.00 0.00 2.15
197 214 7.220683 CCACGGTGCTTCAAAAATAAATATGAG 59.779 37.037 1.68 0.00 0.00 2.90
198 215 7.220683 CACGGTGCTTCAAAAATAAATATGAGG 59.779 37.037 0.00 0.00 0.00 3.86
199 216 7.122055 ACGGTGCTTCAAAAATAAATATGAGGA 59.878 33.333 0.00 0.00 0.00 3.71
200 217 7.645340 CGGTGCTTCAAAAATAAATATGAGGAG 59.355 37.037 0.00 0.00 0.00 3.69
201 218 7.922811 GGTGCTTCAAAAATAAATATGAGGAGG 59.077 37.037 0.00 0.00 0.00 4.30
202 219 7.922811 GTGCTTCAAAAATAAATATGAGGAGGG 59.077 37.037 0.00 0.00 0.00 4.30
203 220 7.838696 TGCTTCAAAAATAAATATGAGGAGGGA 59.161 33.333 0.00 0.00 0.00 4.20
204 221 8.695456 GCTTCAAAAATAAATATGAGGAGGGAA 58.305 33.333 0.00 0.00 0.00 3.97
206 223 8.237811 TCAAAAATAAATATGAGGAGGGAAGC 57.762 34.615 0.00 0.00 0.00 3.86
207 224 7.838696 TCAAAAATAAATATGAGGAGGGAAGCA 59.161 33.333 0.00 0.00 0.00 3.91
208 225 8.645110 CAAAAATAAATATGAGGAGGGAAGCAT 58.355 33.333 0.00 0.00 0.00 3.79
209 226 8.788238 AAAATAAATATGAGGAGGGAAGCATT 57.212 30.769 0.00 0.00 0.00 3.56
210 227 8.788238 AAATAAATATGAGGAGGGAAGCATTT 57.212 30.769 0.00 0.00 0.00 2.32
211 228 7.771927 ATAAATATGAGGAGGGAAGCATTTG 57.228 36.000 0.00 0.00 0.00 2.32
212 229 5.393068 AATATGAGGAGGGAAGCATTTGA 57.607 39.130 0.00 0.00 0.00 2.69
213 230 2.496899 TGAGGAGGGAAGCATTTGAC 57.503 50.000 0.00 0.00 0.00 3.18
214 231 1.988107 TGAGGAGGGAAGCATTTGACT 59.012 47.619 0.00 0.00 0.00 3.41
215 232 3.181329 TGAGGAGGGAAGCATTTGACTA 58.819 45.455 0.00 0.00 0.00 2.59
216 233 3.782523 TGAGGAGGGAAGCATTTGACTAT 59.217 43.478 0.00 0.00 0.00 2.12
217 234 4.228210 TGAGGAGGGAAGCATTTGACTATT 59.772 41.667 0.00 0.00 0.00 1.73
218 235 5.428457 TGAGGAGGGAAGCATTTGACTATTA 59.572 40.000 0.00 0.00 0.00 0.98
219 236 6.069673 TGAGGAGGGAAGCATTTGACTATTAA 60.070 38.462 0.00 0.00 0.00 1.40
220 237 6.122964 AGGAGGGAAGCATTTGACTATTAAC 58.877 40.000 0.00 0.00 0.00 2.01
221 238 5.299531 GGAGGGAAGCATTTGACTATTAACC 59.700 44.000 0.00 0.00 0.00 2.85
222 239 4.881850 AGGGAAGCATTTGACTATTAACCG 59.118 41.667 0.00 0.00 0.00 4.44
223 240 4.879545 GGGAAGCATTTGACTATTAACCGA 59.120 41.667 0.00 0.00 0.00 4.69
224 241 5.355910 GGGAAGCATTTGACTATTAACCGAA 59.644 40.000 0.00 0.00 0.00 4.30
225 242 6.127842 GGGAAGCATTTGACTATTAACCGAAA 60.128 38.462 0.00 0.00 0.00 3.46
303 325 1.746470 TTCCGTGATGAGTCTAGCGA 58.254 50.000 0.00 0.00 0.00 4.93
308 330 2.608090 CGTGATGAGTCTAGCGACACTA 59.392 50.000 0.00 0.00 42.73 2.74
335 357 5.357257 TGGCGGTGTAGATATTTTTCTCTC 58.643 41.667 0.00 0.00 0.00 3.20
339 361 8.521176 GGCGGTGTAGATATTTTTCTCTCTATA 58.479 37.037 0.00 0.00 0.00 1.31
356 378 9.920133 TCTCTCTATATGCTTGATCAAACATAC 57.080 33.333 26.14 8.76 0.00 2.39
365 387 9.632638 ATGCTTGATCAAACATACTAGGTAAAT 57.367 29.630 20.17 0.00 0.00 1.40
395 417 4.639135 AAGAAGAAGAAAACACTGGTGC 57.361 40.909 0.17 0.00 0.00 5.01
397 419 0.663153 AGAAGAAAACACTGGTGCGC 59.337 50.000 0.00 0.00 0.00 6.09
399 421 1.065551 GAAGAAAACACTGGTGCGCTT 59.934 47.619 9.73 0.00 0.00 4.68
400 422 1.102978 AGAAAACACTGGTGCGCTTT 58.897 45.000 9.73 0.00 0.00 3.51
401 423 1.476488 AGAAAACACTGGTGCGCTTTT 59.524 42.857 9.73 4.83 0.00 2.27
402 424 2.685897 AGAAAACACTGGTGCGCTTTTA 59.314 40.909 9.73 0.00 0.00 1.52
403 425 3.317993 AGAAAACACTGGTGCGCTTTTAT 59.682 39.130 9.73 0.00 0.00 1.40
404 426 2.704725 AACACTGGTGCGCTTTTATG 57.295 45.000 9.73 4.38 0.00 1.90
470 496 2.435059 GCGGAGAAGAGTGGTGGC 60.435 66.667 0.00 0.00 0.00 5.01
471 497 2.125912 CGGAGAAGAGTGGTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
507 533 2.480037 TGTGCTTTTCATACTGACAGCG 59.520 45.455 1.25 0.00 36.29 5.18
524 557 2.284151 GGGGAGGAGGAGGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
545 578 2.271800 GAAGACGGTTGATGCTACCAG 58.728 52.381 0.00 0.00 35.31 4.00
563 596 2.157738 CAGAGAAAGAGTGGCAAAGGG 58.842 52.381 0.00 0.00 0.00 3.95
564 597 2.057922 AGAGAAAGAGTGGCAAAGGGA 58.942 47.619 0.00 0.00 0.00 4.20
565 598 2.155279 GAGAAAGAGTGGCAAAGGGAC 58.845 52.381 0.00 0.00 0.00 4.46
567 600 1.882623 GAAAGAGTGGCAAAGGGACAG 59.117 52.381 0.00 0.00 32.72 3.51
568 601 0.538287 AAGAGTGGCAAAGGGACAGC 60.538 55.000 0.00 0.00 32.72 4.40
569 602 1.228245 GAGTGGCAAAGGGACAGCA 60.228 57.895 0.00 0.00 32.72 4.41
570 603 0.823356 GAGTGGCAAAGGGACAGCAA 60.823 55.000 0.00 0.00 32.72 3.91
571 604 1.109323 AGTGGCAAAGGGACAGCAAC 61.109 55.000 0.00 0.00 32.72 4.17
572 605 1.109323 GTGGCAAAGGGACAGCAACT 61.109 55.000 0.00 0.00 32.72 3.16
574 607 0.823356 GGCAAAGGGACAGCAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
578 616 2.551459 CAAAGGGACAGCAACTCAGAAG 59.449 50.000 0.00 0.00 0.00 2.85
598 636 1.992170 CAGAATCCAGCAAAAGCAGC 58.008 50.000 0.00 0.00 0.00 5.25
602 640 1.624336 ATCCAGCAAAAGCAGCTTCA 58.376 45.000 8.48 0.00 41.14 3.02
603 641 0.956633 TCCAGCAAAAGCAGCTTCAG 59.043 50.000 8.48 5.26 41.14 3.02
604 642 0.956633 CCAGCAAAAGCAGCTTCAGA 59.043 50.000 8.48 0.00 41.14 3.27
605 643 1.335689 CCAGCAAAAGCAGCTTCAGAC 60.336 52.381 8.48 0.00 41.14 3.51
606 644 0.590195 AGCAAAAGCAGCTTCAGACG 59.410 50.000 8.48 0.00 39.87 4.18
607 645 0.386478 GCAAAAGCAGCTTCAGACGG 60.386 55.000 8.48 0.00 0.00 4.79
608 646 0.239347 CAAAAGCAGCTTCAGACGGG 59.761 55.000 8.48 0.00 0.00 5.28
609 647 1.518903 AAAAGCAGCTTCAGACGGGC 61.519 55.000 8.48 0.00 0.00 6.13
610 648 3.909086 AAGCAGCTTCAGACGGGCC 62.909 63.158 0.21 0.00 0.00 5.80
611 649 4.400961 GCAGCTTCAGACGGGCCT 62.401 66.667 0.84 0.00 0.00 5.19
612 650 2.125350 CAGCTTCAGACGGGCCTC 60.125 66.667 0.84 0.00 0.00 4.70
613 651 3.394836 AGCTTCAGACGGGCCTCC 61.395 66.667 0.84 0.00 0.00 4.30
625 663 2.436824 GCCTCCGTTTCCTCCTGC 60.437 66.667 0.00 0.00 0.00 4.85
629 667 2.747855 CCGTTTCCTCCTGCTGCC 60.748 66.667 0.00 0.00 0.00 4.85
788 832 1.657751 CGCATCACTGACGAGGAGGA 61.658 60.000 0.00 0.00 0.00 3.71
790 834 1.470632 GCATCACTGACGAGGAGGAAG 60.471 57.143 0.00 0.00 0.00 3.46
791 835 2.095461 CATCACTGACGAGGAGGAAGA 58.905 52.381 0.00 0.00 0.00 2.87
792 836 1.827681 TCACTGACGAGGAGGAAGAG 58.172 55.000 0.00 0.00 0.00 2.85
793 837 0.172352 CACTGACGAGGAGGAAGAGC 59.828 60.000 0.00 0.00 0.00 4.09
794 838 1.309499 ACTGACGAGGAGGAAGAGCG 61.309 60.000 0.00 0.00 0.00 5.03
795 839 1.999071 CTGACGAGGAGGAAGAGCGG 61.999 65.000 0.00 0.00 0.00 5.52
796 840 1.749638 GACGAGGAGGAAGAGCGGA 60.750 63.158 0.00 0.00 0.00 5.54
797 841 1.720694 GACGAGGAGGAAGAGCGGAG 61.721 65.000 0.00 0.00 0.00 4.63
869 918 2.366972 CCCGATTCCCTCCCACCT 60.367 66.667 0.00 0.00 0.00 4.00
894 943 1.975471 CCCCTCTTTAACTACCCCCA 58.025 55.000 0.00 0.00 0.00 4.96
896 945 2.271777 CCCTCTTTAACTACCCCCACA 58.728 52.381 0.00 0.00 0.00 4.17
897 946 2.026542 CCCTCTTTAACTACCCCCACAC 60.027 54.545 0.00 0.00 0.00 3.82
898 947 2.640826 CCTCTTTAACTACCCCCACACA 59.359 50.000 0.00 0.00 0.00 3.72
899 948 3.307480 CCTCTTTAACTACCCCCACACAG 60.307 52.174 0.00 0.00 0.00 3.66
900 949 3.581332 CTCTTTAACTACCCCCACACAGA 59.419 47.826 0.00 0.00 0.00 3.41
901 950 3.581332 TCTTTAACTACCCCCACACAGAG 59.419 47.826 0.00 0.00 0.00 3.35
921 989 2.018086 CTCCCTCCTCCTCCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
951 1027 1.768077 CATCCCCCACTCCCTCTCC 60.768 68.421 0.00 0.00 0.00 3.71
1295 1403 6.900194 ACACCTTCATATACATGTAAGCCTT 58.100 36.000 10.14 0.00 33.57 4.35
1310 1418 4.335647 CTTGAGCCCTGCCGTGGT 62.336 66.667 0.00 0.00 0.00 4.16
1312 1420 4.641645 TGAGCCCTGCCGTGGTTG 62.642 66.667 0.00 0.00 0.00 3.77
1317 1425 2.131067 CCCTGCCGTGGTTGGTTTT 61.131 57.895 0.00 0.00 0.00 2.43
1318 1426 1.681486 CCCTGCCGTGGTTGGTTTTT 61.681 55.000 0.00 0.00 0.00 1.94
1325 1433 1.682740 GTGGTTGGTTTTTCCTCCGA 58.317 50.000 0.00 0.00 37.07 4.55
1326 1434 1.335810 GTGGTTGGTTTTTCCTCCGAC 59.664 52.381 0.00 0.00 37.38 4.79
1327 1435 1.064611 TGGTTGGTTTTTCCTCCGACA 60.065 47.619 0.00 0.00 39.24 4.35
1328 1436 1.335810 GGTTGGTTTTTCCTCCGACAC 59.664 52.381 0.00 0.00 39.24 3.67
1329 1437 1.335810 GTTGGTTTTTCCTCCGACACC 59.664 52.381 0.00 0.00 37.86 4.16
1330 1438 0.841289 TGGTTTTTCCTCCGACACCT 59.159 50.000 0.00 0.00 37.07 4.00
1331 1439 1.213430 TGGTTTTTCCTCCGACACCTT 59.787 47.619 0.00 0.00 37.07 3.50
1332 1440 1.878088 GGTTTTTCCTCCGACACCTTC 59.122 52.381 0.00 0.00 0.00 3.46
1333 1441 2.567985 GTTTTTCCTCCGACACCTTCA 58.432 47.619 0.00 0.00 0.00 3.02
1334 1442 3.146847 GTTTTTCCTCCGACACCTTCAT 58.853 45.455 0.00 0.00 0.00 2.57
1335 1443 4.320870 GTTTTTCCTCCGACACCTTCATA 58.679 43.478 0.00 0.00 0.00 2.15
1336 1444 4.837093 TTTTCCTCCGACACCTTCATAT 57.163 40.909 0.00 0.00 0.00 1.78
1337 1445 5.943349 TTTTCCTCCGACACCTTCATATA 57.057 39.130 0.00 0.00 0.00 0.86
1338 1446 4.931661 TTCCTCCGACACCTTCATATAC 57.068 45.455 0.00 0.00 0.00 1.47
1339 1447 3.905968 TCCTCCGACACCTTCATATACA 58.094 45.455 0.00 0.00 0.00 2.29
1340 1448 4.480115 TCCTCCGACACCTTCATATACAT 58.520 43.478 0.00 0.00 0.00 2.29
1341 1449 4.280929 TCCTCCGACACCTTCATATACATG 59.719 45.833 0.00 0.00 0.00 3.21
1342 1450 4.039245 CCTCCGACACCTTCATATACATGT 59.961 45.833 2.69 2.69 33.57 3.21
1343 1451 5.243060 CCTCCGACACCTTCATATACATGTA 59.757 44.000 8.27 8.27 33.57 2.29
1344 1452 6.239204 CCTCCGACACCTTCATATACATGTAA 60.239 42.308 10.14 0.00 33.57 2.41
1345 1453 6.745116 TCCGACACCTTCATATACATGTAAG 58.255 40.000 10.14 3.97 33.57 2.34
1346 1454 5.405571 CCGACACCTTCATATACATGTAAGC 59.594 44.000 10.14 0.00 33.57 3.09
1347 1455 5.405571 CGACACCTTCATATACATGTAAGCC 59.594 44.000 10.14 0.00 33.57 4.35
1348 1456 6.500589 ACACCTTCATATACATGTAAGCCT 57.499 37.500 10.14 0.00 33.57 4.58
1349 1457 6.900194 ACACCTTCATATACATGTAAGCCTT 58.100 36.000 10.14 0.00 33.57 4.35
1350 1458 6.992715 ACACCTTCATATACATGTAAGCCTTC 59.007 38.462 10.14 0.00 33.57 3.46
1351 1459 6.428159 CACCTTCATATACATGTAAGCCTTCC 59.572 42.308 10.14 0.00 33.57 3.46
1352 1460 6.101150 ACCTTCATATACATGTAAGCCTTCCA 59.899 38.462 10.14 0.00 33.57 3.53
1353 1461 6.998074 CCTTCATATACATGTAAGCCTTCCAA 59.002 38.462 10.14 0.00 33.57 3.53
1354 1462 7.502226 CCTTCATATACATGTAAGCCTTCCAAA 59.498 37.037 10.14 0.00 33.57 3.28
1355 1463 8.450578 TTCATATACATGTAAGCCTTCCAAAG 57.549 34.615 10.14 0.00 33.57 2.77
1356 1464 6.486657 TCATATACATGTAAGCCTTCCAAAGC 59.513 38.462 10.14 0.00 33.57 3.51
1357 1465 3.160679 ACATGTAAGCCTTCCAAAGCT 57.839 42.857 0.00 0.00 42.40 3.74
1358 1466 3.084786 ACATGTAAGCCTTCCAAAGCTC 58.915 45.455 0.00 0.00 38.74 4.09
1359 1467 1.808411 TGTAAGCCTTCCAAAGCTCG 58.192 50.000 0.00 0.00 38.74 5.03
1360 1468 1.087501 GTAAGCCTTCCAAAGCTCGG 58.912 55.000 0.00 0.00 38.74 4.63
1364 1472 1.303643 CCTTCCAAAGCTCGGCCTT 60.304 57.895 0.00 0.00 0.00 4.35
1367 1475 0.179004 TTCCAAAGCTCGGCCTTGAA 60.179 50.000 0.00 0.00 32.35 2.69
1369 1477 0.890996 CCAAAGCTCGGCCTTGAACT 60.891 55.000 0.00 0.00 32.35 3.01
1376 1484 2.644992 GGCCTTGAACTTGCCGTG 59.355 61.111 0.00 0.00 35.08 4.94
1382 1490 1.134175 CTTGAACTTGCCGTGGTTTGT 59.866 47.619 0.00 0.00 0.00 2.83
1388 1496 1.586123 CTTGCCGTGGTTTGTTTTTCG 59.414 47.619 0.00 0.00 0.00 3.46
1389 1497 0.179134 TGCCGTGGTTTGTTTTTCGG 60.179 50.000 0.00 0.00 40.72 4.30
1390 1498 2.584111 CCGTGGTTTGTTTTTCGGC 58.416 52.632 0.00 0.00 0.00 5.54
1391 1499 1.203600 CCGTGGTTTGTTTTTCGGCG 61.204 55.000 0.00 0.00 0.00 6.46
1392 1500 1.203600 CGTGGTTTGTTTTTCGGCGG 61.204 55.000 7.21 0.00 0.00 6.13
1393 1501 0.100861 GTGGTTTGTTTTTCGGCGGA 59.899 50.000 7.21 0.00 0.00 5.54
1394 1502 0.100861 TGGTTTGTTTTTCGGCGGAC 59.899 50.000 7.21 1.76 0.00 4.79
1395 1503 0.382873 GGTTTGTTTTTCGGCGGACT 59.617 50.000 7.21 0.00 0.00 3.85
1398 1506 2.196295 TTGTTTTTCGGCGGACTTTG 57.804 45.000 7.21 0.00 0.00 2.77
1399 1507 1.096416 TGTTTTTCGGCGGACTTTGT 58.904 45.000 7.21 0.00 0.00 2.83
1402 1510 0.305313 TTTTCGGCGGACTTTGTTCG 59.695 50.000 7.21 0.00 37.63 3.95
1406 1514 1.615107 CGGCGGACTTTGTTCGTCTC 61.615 60.000 0.00 0.00 36.96 3.36
1411 1519 1.270550 GGACTTTGTTCGTCTCCCGTA 59.729 52.381 0.00 0.00 37.94 4.02
1412 1521 2.593257 GACTTTGTTCGTCTCCCGTAG 58.407 52.381 0.00 0.00 37.94 3.51
1416 1525 3.498927 TTGTTCGTCTCCCGTAGAATC 57.501 47.619 0.00 0.00 35.47 2.52
1419 1528 3.508793 TGTTCGTCTCCCGTAGAATCTTT 59.491 43.478 0.00 0.00 35.47 2.52
1420 1529 3.777465 TCGTCTCCCGTAGAATCTTTG 57.223 47.619 0.00 0.00 35.47 2.77
1421 1530 2.159282 TCGTCTCCCGTAGAATCTTTGC 60.159 50.000 0.00 0.00 35.47 3.68
1422 1531 2.416836 CGTCTCCCGTAGAATCTTTGCA 60.417 50.000 0.00 0.00 35.47 4.08
1423 1532 3.738281 CGTCTCCCGTAGAATCTTTGCAT 60.738 47.826 0.00 0.00 35.47 3.96
1424 1533 3.557595 GTCTCCCGTAGAATCTTTGCATG 59.442 47.826 0.00 0.00 35.47 4.06
1425 1534 3.450817 TCTCCCGTAGAATCTTTGCATGA 59.549 43.478 0.00 0.00 0.00 3.07
1426 1535 4.101585 TCTCCCGTAGAATCTTTGCATGAT 59.898 41.667 0.00 0.00 0.00 2.45
1428 1537 5.541845 TCCCGTAGAATCTTTGCATGATAG 58.458 41.667 0.00 0.00 0.00 2.08
1430 1540 4.153117 CCGTAGAATCTTTGCATGATAGCC 59.847 45.833 0.00 0.00 0.00 3.93
1447 1557 2.023461 CGCTGCTCTCGGACGTAG 59.977 66.667 0.00 0.00 0.00 3.51
1465 1575 6.355397 ACGTAGAGATCGATCGAACTTTTA 57.645 37.500 26.00 18.65 0.00 1.52
1467 1577 7.070798 ACGTAGAGATCGATCGAACTTTTATC 58.929 38.462 26.00 15.47 0.00 1.75
1468 1578 6.244677 CGTAGAGATCGATCGAACTTTTATCG 59.755 42.308 26.00 19.92 42.90 2.92
1469 1579 5.453648 AGAGATCGATCGAACTTTTATCGG 58.546 41.667 26.00 0.00 42.07 4.18
1470 1580 5.238868 AGAGATCGATCGAACTTTTATCGGA 59.761 40.000 26.00 0.00 42.07 4.55
1472 1582 6.448006 AGATCGATCGAACTTTTATCGGATT 58.552 36.000 23.50 0.00 42.07 3.01
1473 1583 6.924060 AGATCGATCGAACTTTTATCGGATTT 59.076 34.615 23.50 0.00 42.07 2.17
1474 1584 6.268797 TCGATCGAACTTTTATCGGATTTG 57.731 37.500 16.99 0.00 42.07 2.32
1475 1585 5.808540 TCGATCGAACTTTTATCGGATTTGT 59.191 36.000 16.99 0.00 42.07 2.83
1476 1586 6.311935 TCGATCGAACTTTTATCGGATTTGTT 59.688 34.615 16.99 0.00 42.07 2.83
1477 1587 6.959311 CGATCGAACTTTTATCGGATTTGTTT 59.041 34.615 10.26 0.00 40.59 2.83
1482 1642 8.225107 CGAACTTTTATCGGATTTGTTTGTCTA 58.775 33.333 0.00 0.00 36.68 2.59
1505 1669 2.423538 GGGATTCGAGGTTGATGGTTTG 59.576 50.000 0.00 0.00 0.00 2.93
1509 1673 2.985896 TCGAGGTTGATGGTTTGATCC 58.014 47.619 0.00 0.00 0.00 3.36
1513 1677 1.133025 GGTTGATGGTTTGATCCTGCG 59.867 52.381 0.00 0.00 0.00 5.18
1520 1684 1.135575 GGTTTGATCCTGCGCTTCTTG 60.136 52.381 9.73 0.00 0.00 3.02
1528 1692 4.103103 GCGCTTCTTGTTCCGGCC 62.103 66.667 0.00 0.00 0.00 6.13
1531 1695 2.335712 GCTTCTTGTTCCGGCCCTG 61.336 63.158 0.00 0.00 0.00 4.45
1533 1697 0.537371 CTTCTTGTTCCGGCCCTGTT 60.537 55.000 0.00 0.00 0.00 3.16
1537 1701 0.461961 TTGTTCCGGCCCTGTTTTTG 59.538 50.000 0.00 0.00 0.00 2.44
1538 1702 1.365999 GTTCCGGCCCTGTTTTTGG 59.634 57.895 0.00 0.00 0.00 3.28
1539 1703 1.075896 TTCCGGCCCTGTTTTTGGT 60.076 52.632 0.00 0.00 0.00 3.67
1545 1711 2.766313 GGCCCTGTTTTTGGTGAAATC 58.234 47.619 0.00 0.00 0.00 2.17
1555 1721 7.972527 TGTTTTTGGTGAAATCATTTTGTGAG 58.027 30.769 0.00 0.00 40.92 3.51
1577 1743 4.597075 AGTTGGGGCTTTAATTTGGTTGAT 59.403 37.500 0.00 0.00 0.00 2.57
1589 1756 4.974368 TTTGGTTGATGAAACGAACACT 57.026 36.364 0.00 0.00 39.91 3.55
1623 1790 1.039856 GCCTCCTGTTTTTGGCAGAA 58.960 50.000 0.00 0.00 44.34 3.02
1624 1791 1.412343 GCCTCCTGTTTTTGGCAGAAA 59.588 47.619 0.00 0.00 44.34 2.52
1626 1793 3.457234 CCTCCTGTTTTTGGCAGAAAAC 58.543 45.455 20.93 20.93 45.31 2.43
1641 1808 5.387279 GCAGAAAACCAATCAAATGCAATG 58.613 37.500 0.00 0.00 32.79 2.82
1648 1818 6.790285 ACCAATCAAATGCAATGAAAGAAC 57.210 33.333 9.32 0.00 0.00 3.01
1681 1856 3.308401 AGTTTTTGCATTTCTCCCCACT 58.692 40.909 0.00 0.00 0.00 4.00
1696 1871 1.632589 CCACTTTTGGAGGGGGAAAG 58.367 55.000 0.00 0.00 45.98 2.62
1704 1879 0.553333 GGAGGGGGAAAGGGAATCAG 59.447 60.000 0.00 0.00 0.00 2.90
1782 1964 3.060602 GTGCACTCTGTAACAACCTCTC 58.939 50.000 10.32 0.00 0.00 3.20
1783 1965 2.698274 TGCACTCTGTAACAACCTCTCA 59.302 45.455 0.00 0.00 0.00 3.27
1784 1966 3.060602 GCACTCTGTAACAACCTCTCAC 58.939 50.000 0.00 0.00 0.00 3.51
1785 1967 3.654414 CACTCTGTAACAACCTCTCACC 58.346 50.000 0.00 0.00 0.00 4.02
1786 1968 3.322254 CACTCTGTAACAACCTCTCACCT 59.678 47.826 0.00 0.00 0.00 4.00
1787 1969 3.574826 ACTCTGTAACAACCTCTCACCTC 59.425 47.826 0.00 0.00 0.00 3.85
1788 1970 3.829601 CTCTGTAACAACCTCTCACCTCT 59.170 47.826 0.00 0.00 0.00 3.69
1807 1989 4.695928 CCTCTGCATCATTCATAGGATGTG 59.304 45.833 0.00 0.00 42.90 3.21
1846 2035 3.780294 TCCAATAATACCACTCACAGGCT 59.220 43.478 0.00 0.00 0.00 4.58
1869 2058 4.260170 ACAGATCTGCATTTCTTGTCCTC 58.740 43.478 22.83 0.00 0.00 3.71
1924 2116 4.202441 GCCATCTACAACCAATGATCACT 58.798 43.478 0.00 0.00 0.00 3.41
1931 2123 3.504906 ACAACCAATGATCACTGAGCTTG 59.495 43.478 5.56 6.68 0.00 4.01
1982 2178 2.046892 GCCTTCTGCAGCCTCGAA 60.047 61.111 9.47 0.00 40.77 3.71
2021 2217 0.832135 ACCTGGACGAGCTCAAGGAA 60.832 55.000 22.04 1.79 0.00 3.36
2027 2223 3.139077 GGACGAGCTCAAGGAAAAGAAA 58.861 45.455 15.40 0.00 0.00 2.52
2103 2303 2.050895 CCTAGCATCGACGGAGCG 60.051 66.667 0.00 0.00 0.00 5.03
2125 2326 4.606961 GAAAGAACAGAAAATCGTTGGCA 58.393 39.130 0.00 0.00 0.00 4.92
2134 2335 1.276622 AATCGTTGGCACCCTCTACT 58.723 50.000 0.00 0.00 0.00 2.57
2272 2475 4.104738 GGGATGTAGAGATTGGAATTGGGA 59.895 45.833 0.00 0.00 0.00 4.37
2283 2486 4.301072 TGGAATTGGGACTAGGTGAAAG 57.699 45.455 0.00 0.00 0.00 2.62
2290 2494 2.504367 GGACTAGGTGAAAGCTTGCAA 58.496 47.619 9.26 0.00 46.63 4.08
2331 2535 2.031163 AGGTGTGCCGAGCAGAAC 59.969 61.111 3.37 3.37 39.94 3.01
2393 2597 7.661536 TGAGATTTGGAGCTAGTACTGTTAT 57.338 36.000 5.39 0.00 0.00 1.89
2463 2668 2.158667 TCTGTCCCCTTGTTGAACTTCC 60.159 50.000 0.00 0.00 0.00 3.46
2520 2727 7.068348 ACAGAGTAGATATTTCGACAAAGCCTA 59.932 37.037 0.00 0.00 30.58 3.93
2562 2769 4.827284 CAGGAGTTTCACCATTAACCTTGT 59.173 41.667 0.00 0.00 0.00 3.16
2584 2795 2.311462 GACTGATTGATCGATCGACCG 58.689 52.381 22.06 10.97 0.00 4.79
2587 2798 1.332178 GATTGATCGATCGACCGCTC 58.668 55.000 22.06 14.57 0.00 5.03
2588 2799 0.668535 ATTGATCGATCGACCGCTCA 59.331 50.000 22.06 17.16 33.61 4.26
2589 2800 0.668535 TTGATCGATCGACCGCTCAT 59.331 50.000 22.06 1.65 35.14 2.90
2590 2801 0.238553 TGATCGATCGACCGCTCATC 59.761 55.000 22.06 12.65 30.98 2.92
2608 2819 1.755395 CCATCACATGGTGCCCCAG 60.755 63.158 0.00 0.00 46.15 4.45
2609 2820 2.043652 ATCACATGGTGCCCCAGC 60.044 61.111 0.00 0.00 46.15 4.85
2666 2885 2.079158 CATGACACTGACATGTGGGAC 58.921 52.381 1.15 0.00 41.84 4.46
2671 2890 0.391661 ACTGACATGTGGGACGATGC 60.392 55.000 1.15 0.00 0.00 3.91
2688 2907 4.201783 ACGATGCTGCTAACCGTTTTTATC 60.202 41.667 0.00 0.00 0.00 1.75
3050 3292 1.402968 TCACCGCCGTCTGAGTAATAC 59.597 52.381 0.00 0.00 0.00 1.89
3077 3319 0.856982 TCCCCTGGTTGGTTCAATGT 59.143 50.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.849543 ACCACTAGGAAGGTGTAAAGATATAA 57.150 34.615 3.32 0.00 36.60 0.98
58 59 9.091220 GATATACCACTAGGAAGGTGTAAAGAT 57.909 37.037 12.45 2.14 38.87 2.40
60 61 8.246430 TGATATACCACTAGGAAGGTGTAAAG 57.754 38.462 12.45 0.00 38.87 1.85
62 63 7.787904 ACATGATATACCACTAGGAAGGTGTAA 59.212 37.037 12.45 0.10 38.87 2.41
65 66 6.672266 ACATGATATACCACTAGGAAGGTG 57.328 41.667 12.45 0.00 38.87 4.00
67 68 6.127310 GGCTACATGATATACCACTAGGAAGG 60.127 46.154 0.00 0.00 38.69 3.46
145 147 4.018415 TCTTTTATGTTTGGAGGAGGAGGG 60.018 45.833 0.00 0.00 0.00 4.30
146 148 5.179452 TCTTTTATGTTTGGAGGAGGAGG 57.821 43.478 0.00 0.00 0.00 4.30
147 149 5.810095 ACTCTTTTATGTTTGGAGGAGGAG 58.190 41.667 0.00 0.00 0.00 3.69
149 151 4.944317 GGACTCTTTTATGTTTGGAGGAGG 59.056 45.833 0.00 0.00 0.00 4.30
150 152 5.412904 GTGGACTCTTTTATGTTTGGAGGAG 59.587 44.000 0.00 0.00 0.00 3.69
152 154 4.154195 CGTGGACTCTTTTATGTTTGGAGG 59.846 45.833 0.00 0.00 0.00 4.30
153 155 4.154195 CCGTGGACTCTTTTATGTTTGGAG 59.846 45.833 0.00 0.00 0.00 3.86
154 156 4.069304 CCGTGGACTCTTTTATGTTTGGA 58.931 43.478 0.00 0.00 0.00 3.53
155 157 3.818773 ACCGTGGACTCTTTTATGTTTGG 59.181 43.478 0.00 0.00 0.00 3.28
167 184 1.305201 TTTTGAAGCACCGTGGACTC 58.695 50.000 0.00 0.00 0.00 3.36
168 185 1.757682 TTTTTGAAGCACCGTGGACT 58.242 45.000 0.00 0.00 0.00 3.85
169 186 2.793278 ATTTTTGAAGCACCGTGGAC 57.207 45.000 0.00 0.00 0.00 4.02
170 187 4.920640 TTTATTTTTGAAGCACCGTGGA 57.079 36.364 0.00 0.00 0.00 4.02
171 188 7.032580 TCATATTTATTTTTGAAGCACCGTGG 58.967 34.615 0.00 0.00 0.00 4.94
172 189 7.220683 CCTCATATTTATTTTTGAAGCACCGTG 59.779 37.037 0.00 0.00 0.00 4.94
173 190 7.122055 TCCTCATATTTATTTTTGAAGCACCGT 59.878 33.333 0.00 0.00 0.00 4.83
174 191 7.479980 TCCTCATATTTATTTTTGAAGCACCG 58.520 34.615 0.00 0.00 0.00 4.94
175 192 7.922811 CCTCCTCATATTTATTTTTGAAGCACC 59.077 37.037 0.00 0.00 0.00 5.01
176 193 7.922811 CCCTCCTCATATTTATTTTTGAAGCAC 59.077 37.037 0.00 0.00 0.00 4.40
177 194 7.838696 TCCCTCCTCATATTTATTTTTGAAGCA 59.161 33.333 0.00 0.00 0.00 3.91
178 195 8.237811 TCCCTCCTCATATTTATTTTTGAAGC 57.762 34.615 0.00 0.00 0.00 3.86
180 197 8.695456 GCTTCCCTCCTCATATTTATTTTTGAA 58.305 33.333 0.00 0.00 0.00 2.69
181 198 7.838696 TGCTTCCCTCCTCATATTTATTTTTGA 59.161 33.333 0.00 0.00 0.00 2.69
182 199 8.010733 TGCTTCCCTCCTCATATTTATTTTTG 57.989 34.615 0.00 0.00 0.00 2.44
183 200 8.788238 ATGCTTCCCTCCTCATATTTATTTTT 57.212 30.769 0.00 0.00 0.00 1.94
184 201 8.788238 AATGCTTCCCTCCTCATATTTATTTT 57.212 30.769 0.00 0.00 0.00 1.82
185 202 8.645110 CAAATGCTTCCCTCCTCATATTTATTT 58.355 33.333 0.00 0.00 0.00 1.40
186 203 8.006564 TCAAATGCTTCCCTCCTCATATTTATT 58.993 33.333 0.00 0.00 0.00 1.40
187 204 7.449704 GTCAAATGCTTCCCTCCTCATATTTAT 59.550 37.037 0.00 0.00 0.00 1.40
188 205 6.772716 GTCAAATGCTTCCCTCCTCATATTTA 59.227 38.462 0.00 0.00 0.00 1.40
189 206 5.595952 GTCAAATGCTTCCCTCCTCATATTT 59.404 40.000 0.00 0.00 0.00 1.40
190 207 5.103771 AGTCAAATGCTTCCCTCCTCATATT 60.104 40.000 0.00 0.00 0.00 1.28
191 208 4.414846 AGTCAAATGCTTCCCTCCTCATAT 59.585 41.667 0.00 0.00 0.00 1.78
192 209 3.782523 AGTCAAATGCTTCCCTCCTCATA 59.217 43.478 0.00 0.00 0.00 2.15
193 210 2.579860 AGTCAAATGCTTCCCTCCTCAT 59.420 45.455 0.00 0.00 0.00 2.90
194 211 1.988107 AGTCAAATGCTTCCCTCCTCA 59.012 47.619 0.00 0.00 0.00 3.86
195 212 2.797177 AGTCAAATGCTTCCCTCCTC 57.203 50.000 0.00 0.00 0.00 3.71
196 213 4.870021 AATAGTCAAATGCTTCCCTCCT 57.130 40.909 0.00 0.00 0.00 3.69
197 214 5.299531 GGTTAATAGTCAAATGCTTCCCTCC 59.700 44.000 0.00 0.00 0.00 4.30
198 215 5.007724 CGGTTAATAGTCAAATGCTTCCCTC 59.992 44.000 0.00 0.00 0.00 4.30
199 216 4.881850 CGGTTAATAGTCAAATGCTTCCCT 59.118 41.667 0.00 0.00 0.00 4.20
200 217 4.879545 TCGGTTAATAGTCAAATGCTTCCC 59.120 41.667 0.00 0.00 0.00 3.97
201 218 6.431198 TTCGGTTAATAGTCAAATGCTTCC 57.569 37.500 0.00 0.00 0.00 3.46
202 219 9.434559 GTATTTCGGTTAATAGTCAAATGCTTC 57.565 33.333 0.00 0.00 0.00 3.86
203 220 8.952278 TGTATTTCGGTTAATAGTCAAATGCTT 58.048 29.630 0.00 0.00 0.00 3.91
204 221 8.500753 TGTATTTCGGTTAATAGTCAAATGCT 57.499 30.769 0.00 0.00 0.00 3.79
205 222 9.562583 TTTGTATTTCGGTTAATAGTCAAATGC 57.437 29.630 0.00 0.00 0.00 3.56
210 227 9.369904 GGTAGTTTGTATTTCGGTTAATAGTCA 57.630 33.333 0.00 0.00 0.00 3.41
211 228 8.820933 GGGTAGTTTGTATTTCGGTTAATAGTC 58.179 37.037 0.00 0.00 0.00 2.59
212 229 7.770433 GGGGTAGTTTGTATTTCGGTTAATAGT 59.230 37.037 0.00 0.00 0.00 2.12
213 230 7.042523 CGGGGTAGTTTGTATTTCGGTTAATAG 60.043 40.741 0.00 0.00 0.00 1.73
214 231 6.760770 CGGGGTAGTTTGTATTTCGGTTAATA 59.239 38.462 0.00 0.00 0.00 0.98
215 232 5.585844 CGGGGTAGTTTGTATTTCGGTTAAT 59.414 40.000 0.00 0.00 0.00 1.40
216 233 4.934602 CGGGGTAGTTTGTATTTCGGTTAA 59.065 41.667 0.00 0.00 0.00 2.01
217 234 4.502962 CGGGGTAGTTTGTATTTCGGTTA 58.497 43.478 0.00 0.00 0.00 2.85
218 235 3.337358 CGGGGTAGTTTGTATTTCGGTT 58.663 45.455 0.00 0.00 0.00 4.44
219 236 2.936553 GCGGGGTAGTTTGTATTTCGGT 60.937 50.000 0.00 0.00 0.00 4.69
220 237 1.667212 GCGGGGTAGTTTGTATTTCGG 59.333 52.381 0.00 0.00 0.00 4.30
221 238 1.667212 GGCGGGGTAGTTTGTATTTCG 59.333 52.381 0.00 0.00 0.00 3.46
222 239 2.713877 TGGCGGGGTAGTTTGTATTTC 58.286 47.619 0.00 0.00 0.00 2.17
223 240 2.883122 TGGCGGGGTAGTTTGTATTT 57.117 45.000 0.00 0.00 0.00 1.40
224 241 2.883122 TTGGCGGGGTAGTTTGTATT 57.117 45.000 0.00 0.00 0.00 1.89
225 242 2.883122 TTTGGCGGGGTAGTTTGTAT 57.117 45.000 0.00 0.00 0.00 2.29
275 292 8.029522 GCTAGACTCATCACGGAATATATTTCA 58.970 37.037 4.61 0.00 0.00 2.69
276 293 7.219154 CGCTAGACTCATCACGGAATATATTTC 59.781 40.741 0.00 0.00 0.00 2.17
286 308 3.535691 GTCGCTAGACTCATCACGG 57.464 57.895 0.00 0.00 43.80 4.94
297 319 1.593006 CCGCCAAATTAGTGTCGCTAG 59.407 52.381 0.00 0.00 0.00 3.42
300 322 0.179200 CACCGCCAAATTAGTGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
303 325 3.688694 TCTACACCGCCAAATTAGTGT 57.311 42.857 0.00 0.00 45.06 3.55
308 330 7.339466 AGAGAAAAATATCTACACCGCCAAATT 59.661 33.333 0.00 0.00 0.00 1.82
335 357 9.935241 ACCTAGTATGTTTGATCAAGCATATAG 57.065 33.333 33.70 30.13 43.14 1.31
339 361 9.632638 ATTTACCTAGTATGTTTGATCAAGCAT 57.367 29.630 31.86 31.86 43.19 3.79
340 362 9.461312 AATTTACCTAGTATGTTTGATCAAGCA 57.539 29.630 24.60 24.60 36.03 3.91
341 363 9.722056 CAATTTACCTAGTATGTTTGATCAAGC 57.278 33.333 14.76 14.76 0.00 4.01
365 387 9.840427 CAGTGTTTTCTTCTTCTTAAAGTTCAA 57.160 29.630 0.00 0.00 33.95 2.69
382 404 1.921243 AAAAGCGCACCAGTGTTTTC 58.079 45.000 11.47 0.00 37.64 2.29
421 443 2.169789 CCGCTGCTGGATTCGAGTG 61.170 63.158 4.82 0.00 0.00 3.51
427 449 0.613260 TACACTTCCGCTGCTGGATT 59.387 50.000 12.63 2.81 38.00 3.01
428 450 0.176680 CTACACTTCCGCTGCTGGAT 59.823 55.000 12.63 2.88 38.00 3.41
470 496 0.366871 CACATTTTCGCTCTCGGACG 59.633 55.000 0.00 0.00 36.13 4.79
471 497 0.095417 GCACATTTTCGCTCTCGGAC 59.905 55.000 0.00 0.00 36.13 4.79
507 533 2.284151 GTCCTCCTCCTCCTCCCC 59.716 72.222 0.00 0.00 0.00 4.81
524 557 1.278238 GGTAGCATCAACCGTCTTCG 58.722 55.000 0.00 0.00 0.00 3.79
545 578 2.155279 GTCCCTTTGCCACTCTTTCTC 58.845 52.381 0.00 0.00 0.00 2.87
563 596 2.160822 TCTGCTTCTGAGTTGCTGTC 57.839 50.000 1.99 0.00 0.00 3.51
564 597 2.627515 TTCTGCTTCTGAGTTGCTGT 57.372 45.000 1.99 0.00 0.00 4.40
565 598 2.419324 GGATTCTGCTTCTGAGTTGCTG 59.581 50.000 1.99 1.82 0.00 4.41
567 600 2.419324 CTGGATTCTGCTTCTGAGTTGC 59.581 50.000 0.00 0.00 0.00 4.17
568 601 2.419324 GCTGGATTCTGCTTCTGAGTTG 59.581 50.000 0.00 0.00 35.36 3.16
569 602 2.039480 TGCTGGATTCTGCTTCTGAGTT 59.961 45.455 4.33 0.00 38.45 3.01
570 603 1.627329 TGCTGGATTCTGCTTCTGAGT 59.373 47.619 4.33 0.00 38.45 3.41
571 604 2.398252 TGCTGGATTCTGCTTCTGAG 57.602 50.000 4.33 0.00 38.45 3.35
572 605 2.865119 TTGCTGGATTCTGCTTCTGA 57.135 45.000 4.33 0.00 38.45 3.27
574 607 2.230750 GCTTTTGCTGGATTCTGCTTCT 59.769 45.455 4.33 0.00 43.35 2.85
606 644 3.009714 AGGAGGAAACGGAGGCCC 61.010 66.667 0.00 0.00 0.00 5.80
607 645 2.269241 CAGGAGGAAACGGAGGCC 59.731 66.667 0.00 0.00 0.00 5.19
608 646 2.436824 GCAGGAGGAAACGGAGGC 60.437 66.667 0.00 0.00 0.00 4.70
609 647 1.078848 CAGCAGGAGGAAACGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
610 648 1.743252 GCAGCAGGAGGAAACGGAG 60.743 63.158 0.00 0.00 0.00 4.63
611 649 2.347490 GCAGCAGGAGGAAACGGA 59.653 61.111 0.00 0.00 0.00 4.69
612 650 2.747855 GGCAGCAGGAGGAAACGG 60.748 66.667 0.00 0.00 0.00 4.44
613 651 2.032528 TGGCAGCAGGAGGAAACG 59.967 61.111 0.00 0.00 0.00 3.60
614 652 2.338785 GCTGGCAGCAGGAGGAAAC 61.339 63.158 33.33 0.00 41.89 2.78
615 653 2.034687 GCTGGCAGCAGGAGGAAA 59.965 61.111 33.33 0.00 41.89 3.13
622 660 4.694233 ACACGGAGCTGGCAGCAG 62.694 66.667 38.09 29.21 45.56 4.24
653 691 3.428282 CGGTTTTTCCCGGGAGCG 61.428 66.667 25.26 20.01 44.32 5.03
659 702 2.723231 ACCTTTCCGGTTTTTCCCG 58.277 52.632 0.00 0.00 46.37 5.14
798 842 3.682292 CTTTTCCCTCCCCGCTCCG 62.682 68.421 0.00 0.00 0.00 4.63
799 843 1.269703 TACTTTTCCCTCCCCGCTCC 61.270 60.000 0.00 0.00 0.00 4.70
800 844 0.837940 ATACTTTTCCCTCCCCGCTC 59.162 55.000 0.00 0.00 0.00 5.03
801 845 0.837940 GATACTTTTCCCTCCCCGCT 59.162 55.000 0.00 0.00 0.00 5.52
802 846 0.179026 GGATACTTTTCCCTCCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
846 895 1.152008 GGAGGGAATCGGGGGATCT 60.152 63.158 0.00 0.00 0.00 2.75
869 918 0.971959 TAGTTAAAGAGGGGCGGCGA 60.972 55.000 12.98 0.00 0.00 5.54
881 930 2.039348 GCTCTGTGTGGGGGTAGTTAAA 59.961 50.000 0.00 0.00 0.00 1.52
894 943 1.305718 GAGGAGGGAGGCTCTGTGT 60.306 63.158 15.23 0.00 0.00 3.72
896 945 2.236959 GAGGAGGAGGGAGGCTCTGT 62.237 65.000 15.23 1.23 0.00 3.41
897 946 1.457455 GAGGAGGAGGGAGGCTCTG 60.457 68.421 15.23 0.00 0.00 3.35
898 947 2.710826 GGAGGAGGAGGGAGGCTCT 61.711 68.421 15.23 0.00 0.00 4.09
899 948 2.123033 GGAGGAGGAGGGAGGCTC 60.123 72.222 5.78 5.78 0.00 4.70
900 949 3.773154 GGGAGGAGGAGGGAGGCT 61.773 72.222 0.00 0.00 0.00 4.58
901 950 3.767044 GAGGGAGGAGGAGGGAGGC 62.767 73.684 0.00 0.00 0.00 4.70
921 989 4.467084 GGGATGGCGAGTGGCGAA 62.467 66.667 0.00 0.00 44.92 4.70
1295 1403 4.641645 CAACCACGGCAGGGCTCA 62.642 66.667 0.00 0.00 0.00 4.26
1307 1415 1.064611 TGTCGGAGGAAAAACCAACCA 60.065 47.619 0.00 0.00 42.04 3.67
1310 1418 1.213430 AGGTGTCGGAGGAAAAACCAA 59.787 47.619 0.00 0.00 42.04 3.67
1312 1420 1.878088 GAAGGTGTCGGAGGAAAAACC 59.122 52.381 0.00 0.00 39.35 3.27
1317 1425 4.283337 TGTATATGAAGGTGTCGGAGGAA 58.717 43.478 0.00 0.00 0.00 3.36
1318 1426 3.905968 TGTATATGAAGGTGTCGGAGGA 58.094 45.455 0.00 0.00 0.00 3.71
1325 1433 6.500589 AGGCTTACATGTATATGAAGGTGT 57.499 37.500 6.36 0.00 37.73 4.16
1326 1434 6.428159 GGAAGGCTTACATGTATATGAAGGTG 59.572 42.308 6.36 0.00 37.73 4.00
1327 1435 6.101150 TGGAAGGCTTACATGTATATGAAGGT 59.899 38.462 8.42 0.00 37.73 3.50
1328 1436 6.533730 TGGAAGGCTTACATGTATATGAAGG 58.466 40.000 8.42 0.00 37.73 3.46
1329 1437 8.450578 TTTGGAAGGCTTACATGTATATGAAG 57.549 34.615 14.04 3.64 37.73 3.02
1330 1438 7.013274 GCTTTGGAAGGCTTACATGTATATGAA 59.987 37.037 14.04 0.77 37.73 2.57
1331 1439 6.486657 GCTTTGGAAGGCTTACATGTATATGA 59.513 38.462 14.04 0.00 37.73 2.15
1332 1440 6.488006 AGCTTTGGAAGGCTTACATGTATATG 59.512 38.462 14.04 1.43 36.55 1.78
1333 1441 6.605119 AGCTTTGGAAGGCTTACATGTATAT 58.395 36.000 14.04 0.00 34.96 0.86
1334 1442 6.001449 AGCTTTGGAAGGCTTACATGTATA 57.999 37.500 14.04 0.00 34.96 1.47
1335 1443 4.860022 AGCTTTGGAAGGCTTACATGTAT 58.140 39.130 14.04 0.00 34.96 2.29
1336 1444 4.261801 GAGCTTTGGAAGGCTTACATGTA 58.738 43.478 14.04 0.08 39.05 2.29
1337 1445 3.084786 GAGCTTTGGAAGGCTTACATGT 58.915 45.455 14.04 2.69 39.05 3.21
1338 1446 2.096496 CGAGCTTTGGAAGGCTTACATG 59.904 50.000 14.04 10.53 39.05 3.21
1339 1447 2.359900 CGAGCTTTGGAAGGCTTACAT 58.640 47.619 14.04 0.00 39.05 2.29
1340 1448 1.610624 CCGAGCTTTGGAAGGCTTACA 60.611 52.381 8.42 8.42 39.05 2.41
1341 1449 1.087501 CCGAGCTTTGGAAGGCTTAC 58.912 55.000 1.37 1.37 39.05 2.34
1342 1450 0.676782 GCCGAGCTTTGGAAGGCTTA 60.677 55.000 9.95 0.00 44.06 3.09
1343 1451 1.973812 GCCGAGCTTTGGAAGGCTT 60.974 57.895 9.95 0.00 44.06 4.35
1344 1452 2.360475 GCCGAGCTTTGGAAGGCT 60.360 61.111 9.95 0.00 44.06 4.58
1345 1453 3.443925 GGCCGAGCTTTGGAAGGC 61.444 66.667 9.95 7.71 46.51 4.35
1346 1454 1.303643 AAGGCCGAGCTTTGGAAGG 60.304 57.895 9.95 0.00 0.00 3.46
1347 1455 0.606401 TCAAGGCCGAGCTTTGGAAG 60.606 55.000 16.56 0.00 44.05 3.46
1348 1456 0.179004 TTCAAGGCCGAGCTTTGGAA 60.179 50.000 16.56 9.55 44.05 3.53
1349 1457 0.889186 GTTCAAGGCCGAGCTTTGGA 60.889 55.000 16.56 8.66 44.05 3.53
1350 1458 0.890996 AGTTCAAGGCCGAGCTTTGG 60.891 55.000 16.56 1.68 44.05 3.28
1351 1459 0.954452 AAGTTCAAGGCCGAGCTTTG 59.046 50.000 12.42 12.42 45.01 2.77
1352 1460 0.954452 CAAGTTCAAGGCCGAGCTTT 59.046 50.000 6.95 0.00 34.62 3.51
1353 1461 1.518903 GCAAGTTCAAGGCCGAGCTT 61.519 55.000 0.00 0.00 36.96 3.74
1354 1462 1.968540 GCAAGTTCAAGGCCGAGCT 60.969 57.895 0.00 0.00 0.00 4.09
1355 1463 2.563427 GCAAGTTCAAGGCCGAGC 59.437 61.111 0.00 0.00 0.00 5.03
1356 1464 3.267974 GGCAAGTTCAAGGCCGAG 58.732 61.111 0.00 0.00 38.04 4.63
1359 1467 2.644992 CACGGCAAGTTCAAGGCC 59.355 61.111 0.00 0.00 44.27 5.19
1360 1468 1.734388 AACCACGGCAAGTTCAAGGC 61.734 55.000 0.00 0.00 0.00 4.35
1364 1472 1.178276 AACAAACCACGGCAAGTTCA 58.822 45.000 0.00 0.00 0.00 3.18
1367 1475 2.612604 GAAAAACAAACCACGGCAAGT 58.387 42.857 0.00 0.00 0.00 3.16
1369 1477 1.630148 CGAAAAACAAACCACGGCAA 58.370 45.000 0.00 0.00 0.00 4.52
1376 1484 0.382873 AGTCCGCCGAAAAACAAACC 59.617 50.000 0.00 0.00 0.00 3.27
1382 1490 1.268133 CGAACAAAGTCCGCCGAAAAA 60.268 47.619 0.00 0.00 0.00 1.94
1388 1496 1.289800 GGAGACGAACAAAGTCCGCC 61.290 60.000 0.00 0.00 39.31 6.13
1389 1497 1.289800 GGGAGACGAACAAAGTCCGC 61.290 60.000 0.00 0.00 39.31 5.54
1390 1498 2.823628 GGGAGACGAACAAAGTCCG 58.176 57.895 0.00 0.00 39.31 4.79
1402 1510 3.247006 TGCAAAGATTCTACGGGAGAC 57.753 47.619 0.00 0.00 32.31 3.36
1406 1514 4.153117 GCTATCATGCAAAGATTCTACGGG 59.847 45.833 9.89 0.00 0.00 5.28
1411 1519 2.551459 GCGGCTATCATGCAAAGATTCT 59.449 45.455 9.89 0.00 34.04 2.40
1412 1521 2.551459 AGCGGCTATCATGCAAAGATTC 59.449 45.455 0.00 3.96 34.04 2.52
1416 1525 0.317603 GCAGCGGCTATCATGCAAAG 60.318 55.000 0.26 0.00 38.54 2.77
1430 1540 2.023461 CTACGTCCGAGAGCAGCG 59.977 66.667 0.00 0.00 0.00 5.18
1436 1546 2.674954 GATCGATCTCTACGTCCGAGA 58.325 52.381 18.29 16.77 41.36 4.04
1437 1547 1.387420 CGATCGATCTCTACGTCCGAG 59.613 57.143 22.43 8.14 32.60 4.63
1439 1549 1.416373 TCGATCGATCTCTACGTCCG 58.584 55.000 22.43 7.37 0.00 4.79
1440 1550 2.801679 AGTTCGATCGATCTCTACGTCC 59.198 50.000 20.18 5.65 0.00 4.79
1446 1556 5.238868 TCCGATAAAAGTTCGATCGATCTCT 59.761 40.000 24.75 18.05 44.04 3.10
1447 1557 5.450171 TCCGATAAAAGTTCGATCGATCTC 58.550 41.667 24.75 15.67 44.04 2.75
1465 1575 5.110814 TCCCATAGACAAACAAATCCGAT 57.889 39.130 0.00 0.00 0.00 4.18
1467 1577 5.504010 CGAATCCCATAGACAAACAAATCCG 60.504 44.000 0.00 0.00 0.00 4.18
1468 1578 5.588648 TCGAATCCCATAGACAAACAAATCC 59.411 40.000 0.00 0.00 0.00 3.01
1469 1579 6.238484 CCTCGAATCCCATAGACAAACAAATC 60.238 42.308 0.00 0.00 0.00 2.17
1470 1580 5.590259 CCTCGAATCCCATAGACAAACAAAT 59.410 40.000 0.00 0.00 0.00 2.32
1472 1582 4.019681 ACCTCGAATCCCATAGACAAACAA 60.020 41.667 0.00 0.00 0.00 2.83
1473 1583 3.517901 ACCTCGAATCCCATAGACAAACA 59.482 43.478 0.00 0.00 0.00 2.83
1474 1584 4.138487 ACCTCGAATCCCATAGACAAAC 57.862 45.455 0.00 0.00 0.00 2.93
1475 1585 4.224147 TCAACCTCGAATCCCATAGACAAA 59.776 41.667 0.00 0.00 0.00 2.83
1476 1586 3.772572 TCAACCTCGAATCCCATAGACAA 59.227 43.478 0.00 0.00 0.00 3.18
1477 1587 3.371034 TCAACCTCGAATCCCATAGACA 58.629 45.455 0.00 0.00 0.00 3.41
1482 1642 1.846439 ACCATCAACCTCGAATCCCAT 59.154 47.619 0.00 0.00 0.00 4.00
1505 1669 0.729690 GGAACAAGAAGCGCAGGATC 59.270 55.000 11.47 1.85 0.00 3.36
1509 1673 2.863153 CCGGAACAAGAAGCGCAG 59.137 61.111 11.47 0.00 0.00 5.18
1513 1677 2.034221 AGGGCCGGAACAAGAAGC 59.966 61.111 5.05 0.00 0.00 3.86
1520 1684 1.365999 CCAAAAACAGGGCCGGAAC 59.634 57.895 11.67 0.00 0.00 3.62
1528 1692 7.065563 TCACAAAATGATTTCACCAAAAACAGG 59.934 33.333 0.00 0.00 33.72 4.00
1531 1695 7.973601 ACTCACAAAATGATTTCACCAAAAAC 58.026 30.769 0.00 0.00 36.48 2.43
1533 1697 7.065563 CCAACTCACAAAATGATTTCACCAAAA 59.934 33.333 0.00 0.00 36.48 2.44
1537 1701 4.990426 CCCAACTCACAAAATGATTTCACC 59.010 41.667 0.00 0.00 36.48 4.02
1538 1702 4.990426 CCCCAACTCACAAAATGATTTCAC 59.010 41.667 0.00 0.00 36.48 3.18
1539 1703 4.502950 GCCCCAACTCACAAAATGATTTCA 60.503 41.667 0.00 0.00 36.48 2.69
1545 1711 3.473923 AAAGCCCCAACTCACAAAATG 57.526 42.857 0.00 0.00 0.00 2.32
1555 1721 4.344359 TCAACCAAATTAAAGCCCCAAC 57.656 40.909 0.00 0.00 0.00 3.77
1577 1743 2.031258 TCAAGCCAGTGTTCGTTTCA 57.969 45.000 0.00 0.00 0.00 2.69
1589 1756 0.182061 GAGGCCATCAGATCAAGCCA 59.818 55.000 5.01 0.00 46.35 4.75
1623 1790 7.255208 GGTTCTTTCATTGCATTTGATTGGTTT 60.255 33.333 1.14 0.00 0.00 3.27
1624 1791 6.205270 GGTTCTTTCATTGCATTTGATTGGTT 59.795 34.615 1.14 0.00 0.00 3.67
1626 1793 5.163933 CGGTTCTTTCATTGCATTTGATTGG 60.164 40.000 1.14 0.00 0.00 3.16
1648 1818 6.538189 AATGCAAAAACTAAAACCAATCGG 57.462 33.333 0.00 0.00 38.77 4.18
1664 1834 3.181456 CCAAAAGTGGGGAGAAATGCAAA 60.181 43.478 0.00 0.00 41.77 3.68
1681 1856 1.246294 TTCCCTTTCCCCCTCCAAAA 58.754 50.000 0.00 0.00 0.00 2.44
1692 1867 5.241506 TCATCACACAAACTGATTCCCTTTC 59.758 40.000 0.00 0.00 0.00 2.62
1694 1869 4.520492 GTCATCACACAAACTGATTCCCTT 59.480 41.667 0.00 0.00 0.00 3.95
1696 1871 3.820467 TGTCATCACACAAACTGATTCCC 59.180 43.478 0.00 0.00 0.00 3.97
1704 1879 5.163764 TGAGTGTTCTTGTCATCACACAAAC 60.164 40.000 10.65 0.00 41.73 2.93
1782 1964 4.347360 TCCTATGAATGATGCAGAGGTG 57.653 45.455 13.58 0.00 43.47 4.00
1783 1965 4.350225 ACATCCTATGAATGATGCAGAGGT 59.650 41.667 13.58 0.00 43.47 3.85
1784 1966 4.695928 CACATCCTATGAATGATGCAGAGG 59.304 45.833 7.81 7.81 44.17 3.69
1785 1967 4.695928 CCACATCCTATGAATGATGCAGAG 59.304 45.833 0.00 0.00 41.63 3.35
1786 1968 4.348754 TCCACATCCTATGAATGATGCAGA 59.651 41.667 0.00 0.00 41.63 4.26
1787 1969 4.648651 TCCACATCCTATGAATGATGCAG 58.351 43.478 0.00 0.00 41.63 4.41
1788 1970 4.103627 ACTCCACATCCTATGAATGATGCA 59.896 41.667 0.00 0.00 41.63 3.96
1822 2007 4.384208 GCCTGTGAGTGGTATTATTGGAGT 60.384 45.833 0.00 0.00 0.00 3.85
1846 2035 5.423015 GAGGACAAGAAATGCAGATCTGTA 58.577 41.667 23.38 19.98 0.00 2.74
1869 2058 4.808077 ATTAATCAGCAATCTGTCTGCG 57.192 40.909 0.00 0.00 44.75 5.18
1924 2116 5.963176 TGCAACAAGAAATATCAAGCTCA 57.037 34.783 0.00 0.00 0.00 4.26
1958 2154 2.752358 CTGCAGAAGGCCACCTCA 59.248 61.111 8.42 1.43 43.89 3.86
2021 2217 0.608035 TCGCCGGGAAGCATTTCTTT 60.608 50.000 2.18 0.00 34.56 2.52
2103 2303 4.441087 GTGCCAACGATTTTCTGTTCTTTC 59.559 41.667 0.00 0.00 0.00 2.62
2134 2335 4.385478 AATTAACGGGTTTGGTTCCCTA 57.615 40.909 0.00 0.00 42.56 3.53
2272 2475 2.880890 CACTTGCAAGCTTTCACCTAGT 59.119 45.455 26.27 0.00 0.00 2.57
2283 2486 2.256461 CCGAAGCCACTTGCAAGC 59.744 61.111 26.27 13.68 44.83 4.01
2345 2549 4.473196 TGACCTAATTCTGCACCAGGATAA 59.527 41.667 0.00 0.00 28.19 1.75
2419 2624 3.845781 TTCAGACAACTTGGAGAGCTT 57.154 42.857 0.00 0.00 0.00 3.74
2463 2668 8.459521 TTCTACAGAACACAAACAACATTTTG 57.540 30.769 0.00 0.00 41.47 2.44
2609 2820 7.250569 ACCTCTTTATAACATTGCAACGAATG 58.749 34.615 0.00 0.00 38.97 2.67
2614 2825 9.289303 CATACAACCTCTTTATAACATTGCAAC 57.711 33.333 0.00 0.00 0.00 4.17
2630 2841 2.096496 GTCATGCTGCACATACAACCTC 59.904 50.000 3.57 0.00 36.64 3.85
2666 2885 2.611974 AAAAACGGTTAGCAGCATCG 57.388 45.000 0.00 0.00 0.00 3.84
2671 2890 6.027749 GGTCAATGATAAAAACGGTTAGCAG 58.972 40.000 0.00 0.00 33.23 4.24
2688 2907 3.411446 TGTGGCTTAGTCAAGGTCAATG 58.589 45.455 0.00 0.00 31.96 2.82
2923 3149 4.504916 CGAGCGGCTGTCTCAGGG 62.505 72.222 7.50 0.00 31.21 4.45
2968 3194 1.200020 GTTGCACTATGCCCAAGTGAC 59.800 52.381 12.79 6.19 45.89 3.67
3050 3292 2.685380 AACCAGGGGAGGCTCTCG 60.685 66.667 15.23 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.