Multiple sequence alignment - TraesCS7B01G086700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G086700 chr7B 100.000 2484 0 0 1 2484 100028907 100026424 0.000000e+00 4588.0
1 TraesCS7B01G086700 chr7B 90.541 74 7 0 1568 1641 100026925 100026852 5.650000e-17 99.0
2 TraesCS7B01G086700 chr7B 90.541 74 7 0 1983 2056 100027340 100027267 5.650000e-17 99.0
3 TraesCS7B01G086700 chr7B 79.439 107 10 7 412 506 51070942 51071048 5.730000e-07 65.8
4 TraesCS7B01G086700 chr7B 100.000 31 0 0 421 451 736751473 736751443 9.600000e-05 58.4
5 TraesCS7B01G086700 chr7B 78.571 98 9 8 421 507 688588900 688588804 1.000000e-03 54.7
6 TraesCS7B01G086700 chr7B 92.105 38 1 2 411 448 21184116 21184151 4.000000e-03 52.8
7 TraesCS7B01G086700 chr7D 91.197 1613 85 28 900 2484 136587193 136585610 0.000000e+00 2139.0
8 TraesCS7B01G086700 chr7D 84.362 243 27 6 2 236 136589258 136589019 6.910000e-56 228.0
9 TraesCS7B01G086700 chr7D 90.370 135 12 1 1756 1890 34373470 34373337 2.540000e-40 176.0
10 TraesCS7B01G086700 chr7D 90.789 76 7 0 1566 1641 136586099 136586024 4.370000e-18 102.0
11 TraesCS7B01G086700 chr7A 92.114 1154 63 17 947 2091 136346973 136345839 0.000000e+00 1602.0
12 TraesCS7B01G086700 chr7A 85.057 348 32 9 2139 2484 136345639 136345310 1.100000e-88 337.0
13 TraesCS7B01G086700 chr7A 87.879 99 10 2 2123 2220 136346266 136346169 5.610000e-22 115.0
14 TraesCS7B01G086700 chr7A 93.506 77 5 0 1983 2059 136346358 136346282 5.610000e-22 115.0
15 TraesCS7B01G086700 chr7A 90.789 76 7 0 1566 1641 136345949 136345874 4.370000e-18 102.0
16 TraesCS7B01G086700 chr1D 90.511 137 11 2 1755 1890 156133338 156133473 1.960000e-41 180.0
17 TraesCS7B01G086700 chr1D 81.000 100 6 9 419 506 295184692 295184594 1.590000e-07 67.6
18 TraesCS7B01G086700 chrUn 90.370 135 12 1 1756 1890 96471030 96471163 2.540000e-40 176.0
19 TraesCS7B01G086700 chr3B 90.370 135 12 1 1756 1890 245935613 245935480 2.540000e-40 176.0
20 TraesCS7B01G086700 chr3B 81.437 167 28 3 504 669 153544799 153544635 1.550000e-27 134.0
21 TraesCS7B01G086700 chr3B 81.395 86 9 6 420 501 556364395 556364313 2.060000e-06 63.9
22 TraesCS7B01G086700 chr4D 89.286 140 12 3 1753 1890 74079508 74079370 3.280000e-39 172.0
23 TraesCS7B01G086700 chr4A 89.286 140 12 3 1752 1890 460230805 460230668 3.280000e-39 172.0
24 TraesCS7B01G086700 chr4A 100.000 33 0 0 416 448 133374650 133374618 7.420000e-06 62.1
25 TraesCS7B01G086700 chr2A 89.706 136 13 1 1755 1890 79316158 79316024 3.280000e-39 172.0
26 TraesCS7B01G086700 chr2A 100.000 28 0 0 479 506 31224917 31224890 4.000000e-03 52.8
27 TraesCS7B01G086700 chr5B 79.817 109 7 9 412 508 591529295 591529190 5.730000e-07 65.8
28 TraesCS7B01G086700 chr5B 86.441 59 2 4 420 475 397690036 397689981 2.670000e-05 60.2
29 TraesCS7B01G086700 chr4B 97.222 36 1 0 472 507 606911730 606911765 7.420000e-06 62.1
30 TraesCS7B01G086700 chr5A 100.000 30 0 0 419 448 488048418 488048389 3.450000e-04 56.5
31 TraesCS7B01G086700 chr2D 96.875 32 1 0 421 452 362484656 362484625 1.000000e-03 54.7
32 TraesCS7B01G086700 chr6B 90.244 41 3 1 409 448 708009126 708009166 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G086700 chr7B 100026424 100028907 2483 True 1595.333333 4588 93.694000 1 2484 3 chr7B.!!$R3 2483
1 TraesCS7B01G086700 chr7D 136585610 136589258 3648 True 823.000000 2139 88.782667 2 2484 3 chr7D.!!$R2 2482
2 TraesCS7B01G086700 chr7A 136345310 136346973 1663 True 454.200000 1602 89.869000 947 2484 5 chr7A.!!$R1 1537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 304 0.035439 TTCTTCACCATTCGCTCCCC 60.035 55.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 3013 0.108992 GACCAATAGCGACCGACACA 60.109 55.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.448540 GACACCCGCCATGTCTGAG 60.449 63.158 5.07 0.00 42.68 3.35
31 32 1.142748 GCCATGTCTGAGACCTCGG 59.857 63.158 10.52 8.74 37.32 4.63
33 34 0.174389 CCATGTCTGAGACCTCGGTG 59.826 60.000 10.52 1.68 37.27 4.94
47 48 4.612412 GGTGGGGAACGTGCACGA 62.612 66.667 42.94 19.18 43.02 4.35
65 66 0.807496 GAAGCATCTCCAGTTGCCAC 59.193 55.000 6.09 0.00 40.59 5.01
67 68 2.401766 GCATCTCCAGTTGCCACGG 61.402 63.158 0.00 0.00 35.36 4.94
109 116 3.724914 GACTGCGCTCCTAGCACCC 62.725 68.421 9.73 0.00 42.58 4.61
110 117 4.537433 CTGCGCTCCTAGCACCCC 62.537 72.222 9.73 0.00 42.58 4.95
123 130 4.127744 ACCCCGGCATGGATGGTG 62.128 66.667 0.00 0.00 42.00 4.17
153 160 5.122711 GCTTTTGTATTGAGCATTGCCAATT 59.877 36.000 22.04 11.88 36.45 2.32
164 171 2.037847 GCCAATTGGAGGTGGGCT 59.962 61.111 29.02 0.00 41.39 5.19
165 172 1.610379 GCCAATTGGAGGTGGGCTT 60.610 57.895 29.02 0.00 41.39 4.35
166 173 0.324275 GCCAATTGGAGGTGGGCTTA 60.324 55.000 29.02 0.00 41.39 3.09
169 176 2.233676 CCAATTGGAGGTGGGCTTAAAC 59.766 50.000 20.50 0.00 37.39 2.01
171 178 0.250989 TTGGAGGTGGGCTTAAACCG 60.251 55.000 0.00 0.00 41.61 4.44
174 181 0.250597 GAGGTGGGCTTAAACCGTGT 60.251 55.000 0.00 0.00 41.61 4.49
179 188 0.594602 GGGCTTAAACCGTGTGTTCC 59.405 55.000 0.00 0.00 35.67 3.62
197 206 1.753956 CCGTCTTTTCGGTTTGCTTG 58.246 50.000 0.00 0.00 44.77 4.01
205 214 0.748729 TCGGTTTGCTTGGTTCGGTT 60.749 50.000 0.00 0.00 0.00 4.44
217 226 5.800438 GCTTGGTTCGGTTTATTGATCTTTC 59.200 40.000 0.00 0.00 0.00 2.62
220 229 4.632688 GGTTCGGTTTATTGATCTTTCCGA 59.367 41.667 0.00 0.00 42.75 4.55
236 245 6.237901 TCTTTCCGATCTTCCAAGAATTTGA 58.762 36.000 0.00 0.00 38.77 2.69
238 247 7.394359 TCTTTCCGATCTTCCAAGAATTTGATT 59.606 33.333 0.00 0.00 38.77 2.57
240 249 7.088589 TCCGATCTTCCAAGAATTTGATTTC 57.911 36.000 0.00 0.00 38.77 2.17
241 250 6.095440 TCCGATCTTCCAAGAATTTGATTTCC 59.905 38.462 0.00 0.00 38.77 3.13
242 251 6.127647 CCGATCTTCCAAGAATTTGATTTCCA 60.128 38.462 0.00 0.00 38.77 3.53
243 252 7.315142 CGATCTTCCAAGAATTTGATTTCCAA 58.685 34.615 0.00 0.00 38.77 3.53
244 253 7.977853 CGATCTTCCAAGAATTTGATTTCCAAT 59.022 33.333 0.00 0.00 38.77 3.16
247 256 9.312904 TCTTCCAAGAATTTGATTTCCAATAGT 57.687 29.630 0.00 0.00 36.36 2.12
248 257 9.933723 CTTCCAAGAATTTGATTTCCAATAGTT 57.066 29.630 0.00 0.00 36.36 2.24
249 258 9.709495 TTCCAAGAATTTGATTTCCAATAGTTG 57.291 29.630 0.00 0.00 36.36 3.16
250 259 9.087871 TCCAAGAATTTGATTTCCAATAGTTGA 57.912 29.630 0.00 0.00 36.36 3.18
251 260 9.880157 CCAAGAATTTGATTTCCAATAGTTGAT 57.120 29.630 0.00 0.00 36.36 2.57
255 264 9.305925 GAATTTGATTTCCAATAGTTGATCACC 57.694 33.333 0.00 0.00 34.23 4.02
256 265 6.435430 TTGATTTCCAATAGTTGATCACCG 57.565 37.500 0.00 0.00 0.00 4.94
257 266 4.881273 TGATTTCCAATAGTTGATCACCGG 59.119 41.667 0.00 0.00 0.00 5.28
258 267 4.561500 TTTCCAATAGTTGATCACCGGA 57.438 40.909 9.46 0.00 0.00 5.14
259 268 4.561500 TTCCAATAGTTGATCACCGGAA 57.438 40.909 9.46 0.00 0.00 4.30
260 269 4.771114 TCCAATAGTTGATCACCGGAAT 57.229 40.909 9.46 0.00 0.00 3.01
261 270 4.703897 TCCAATAGTTGATCACCGGAATC 58.296 43.478 9.46 11.66 0.00 2.52
262 271 4.163268 TCCAATAGTTGATCACCGGAATCA 59.837 41.667 9.46 14.40 0.00 2.57
263 272 5.065914 CCAATAGTTGATCACCGGAATCAT 58.934 41.667 19.94 11.80 0.00 2.45
264 273 5.532406 CCAATAGTTGATCACCGGAATCATT 59.468 40.000 19.94 15.02 0.00 2.57
265 274 6.039717 CCAATAGTTGATCACCGGAATCATTT 59.960 38.462 19.94 14.77 0.00 2.32
266 275 6.867662 ATAGTTGATCACCGGAATCATTTC 57.132 37.500 19.94 14.60 0.00 2.17
267 276 3.623060 AGTTGATCACCGGAATCATTTCG 59.377 43.478 19.94 0.00 32.28 3.46
268 277 2.560504 TGATCACCGGAATCATTTCGG 58.439 47.619 16.22 16.22 34.07 4.30
269 278 2.093181 TGATCACCGGAATCATTTCGGT 60.093 45.455 17.79 17.79 38.45 4.69
270 279 2.483014 TCACCGGAATCATTTCGGTT 57.517 45.000 20.97 3.14 36.95 4.44
271 280 2.352388 TCACCGGAATCATTTCGGTTC 58.648 47.619 20.97 0.00 36.95 3.62
272 281 2.027561 TCACCGGAATCATTTCGGTTCT 60.028 45.455 20.97 0.00 36.95 3.01
273 282 2.747446 CACCGGAATCATTTCGGTTCTT 59.253 45.455 20.97 0.00 36.95 2.52
274 283 2.747446 ACCGGAATCATTTCGGTTCTTG 59.253 45.455 17.79 0.00 36.20 3.02
275 284 2.097466 CCGGAATCATTTCGGTTCTTGG 59.903 50.000 9.21 0.00 31.99 3.61
276 285 2.747446 CGGAATCATTTCGGTTCTTGGT 59.253 45.455 0.00 0.00 32.28 3.67
277 286 3.190535 CGGAATCATTTCGGTTCTTGGTT 59.809 43.478 0.00 0.00 32.28 3.67
278 287 4.671766 CGGAATCATTTCGGTTCTTGGTTC 60.672 45.833 0.00 0.00 32.28 3.62
279 288 4.459337 GGAATCATTTCGGTTCTTGGTTCT 59.541 41.667 0.00 0.00 31.42 3.01
280 289 5.048013 GGAATCATTTCGGTTCTTGGTTCTT 60.048 40.000 0.00 0.00 31.42 2.52
281 290 5.629079 ATCATTTCGGTTCTTGGTTCTTC 57.371 39.130 0.00 0.00 0.00 2.87
282 291 4.456535 TCATTTCGGTTCTTGGTTCTTCA 58.543 39.130 0.00 0.00 0.00 3.02
283 292 4.274950 TCATTTCGGTTCTTGGTTCTTCAC 59.725 41.667 0.00 0.00 0.00 3.18
293 302 1.087501 GGTTCTTCACCATTCGCTCC 58.912 55.000 0.00 0.00 46.42 4.70
294 303 1.087501 GTTCTTCACCATTCGCTCCC 58.912 55.000 0.00 0.00 0.00 4.30
295 304 0.035439 TTCTTCACCATTCGCTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
296 305 1.815421 CTTCACCATTCGCTCCCCG 60.815 63.158 0.00 0.00 38.61 5.73
297 306 3.323758 TTCACCATTCGCTCCCCGG 62.324 63.158 0.00 0.00 37.59 5.73
298 307 3.781307 CACCATTCGCTCCCCGGA 61.781 66.667 0.73 0.00 37.59 5.14
299 308 2.768344 ACCATTCGCTCCCCGGAT 60.768 61.111 0.73 0.00 34.84 4.18
301 310 2.281070 CATTCGCTCCCCGGATGG 60.281 66.667 0.73 0.00 46.88 3.51
302 311 2.768344 ATTCGCTCCCCGGATGGT 60.768 61.111 0.73 0.00 32.76 3.55
303 312 3.106986 ATTCGCTCCCCGGATGGTG 62.107 63.158 0.73 0.00 32.76 4.17
305 314 4.096003 CGCTCCCCGGATGGTGTT 62.096 66.667 0.73 0.00 0.00 3.32
306 315 2.124695 GCTCCCCGGATGGTGTTC 60.125 66.667 0.73 0.00 0.00 3.18
307 316 2.186903 CTCCCCGGATGGTGTTCG 59.813 66.667 0.73 0.00 0.00 3.95
308 317 3.385749 CTCCCCGGATGGTGTTCGG 62.386 68.421 0.73 0.00 43.05 4.30
310 319 4.096003 CCCGGATGGTGTTCGGCT 62.096 66.667 0.73 0.00 42.18 5.52
311 320 2.511600 CCGGATGGTGTTCGGCTC 60.512 66.667 0.00 0.00 37.25 4.70
312 321 2.579201 CGGATGGTGTTCGGCTCT 59.421 61.111 0.00 0.00 0.00 4.09
313 322 1.811266 CGGATGGTGTTCGGCTCTG 60.811 63.158 0.00 0.00 0.00 3.35
314 323 1.596934 GGATGGTGTTCGGCTCTGA 59.403 57.895 0.00 0.00 0.00 3.27
315 324 0.179000 GGATGGTGTTCGGCTCTGAT 59.821 55.000 0.00 0.00 0.00 2.90
316 325 1.407437 GGATGGTGTTCGGCTCTGATT 60.407 52.381 0.00 0.00 0.00 2.57
317 326 2.158957 GGATGGTGTTCGGCTCTGATTA 60.159 50.000 0.00 0.00 0.00 1.75
318 327 3.531538 GATGGTGTTCGGCTCTGATTAA 58.468 45.455 0.00 0.00 0.00 1.40
319 328 3.410631 TGGTGTTCGGCTCTGATTAAA 57.589 42.857 0.00 0.00 0.00 1.52
320 329 3.950397 TGGTGTTCGGCTCTGATTAAAT 58.050 40.909 0.00 0.00 0.00 1.40
321 330 3.689161 TGGTGTTCGGCTCTGATTAAATG 59.311 43.478 0.00 0.00 0.00 2.32
322 331 3.938963 GGTGTTCGGCTCTGATTAAATGA 59.061 43.478 0.00 0.00 0.00 2.57
323 332 4.394920 GGTGTTCGGCTCTGATTAAATGAA 59.605 41.667 0.00 0.00 0.00 2.57
324 333 5.324697 GTGTTCGGCTCTGATTAAATGAAC 58.675 41.667 0.00 0.00 36.06 3.18
325 334 5.122396 GTGTTCGGCTCTGATTAAATGAACT 59.878 40.000 0.00 0.00 36.38 3.01
326 335 6.312918 GTGTTCGGCTCTGATTAAATGAACTA 59.687 38.462 0.00 0.00 36.38 2.24
327 336 6.876789 TGTTCGGCTCTGATTAAATGAACTAA 59.123 34.615 0.00 0.00 36.38 2.24
328 337 7.389330 TGTTCGGCTCTGATTAAATGAACTAAA 59.611 33.333 0.00 0.00 36.38 1.85
329 338 8.398665 GTTCGGCTCTGATTAAATGAACTAAAT 58.601 33.333 0.00 0.00 33.52 1.40
330 339 8.506168 TCGGCTCTGATTAAATGAACTAAATT 57.494 30.769 0.00 0.00 0.00 1.82
331 340 8.956426 TCGGCTCTGATTAAATGAACTAAATTT 58.044 29.630 0.00 0.00 0.00 1.82
332 341 9.226345 CGGCTCTGATTAAATGAACTAAATTTC 57.774 33.333 0.00 0.00 0.00 2.17
333 342 9.226345 GGCTCTGATTAAATGAACTAAATTTCG 57.774 33.333 0.00 0.00 0.00 3.46
334 343 9.774742 GCTCTGATTAAATGAACTAAATTTCGT 57.225 29.630 0.00 0.00 0.00 3.85
343 352 7.887996 ATGAACTAAATTTCGTTACGGTACA 57.112 32.000 7.97 2.35 0.00 2.90
344 353 7.887996 TGAACTAAATTTCGTTACGGTACAT 57.112 32.000 7.97 0.00 0.00 2.29
345 354 7.731720 TGAACTAAATTTCGTTACGGTACATG 58.268 34.615 7.97 0.00 0.00 3.21
346 355 7.384660 TGAACTAAATTTCGTTACGGTACATGT 59.615 33.333 7.97 2.69 0.00 3.21
347 356 7.052565 ACTAAATTTCGTTACGGTACATGTG 57.947 36.000 9.11 0.00 0.00 3.21
348 357 6.867816 ACTAAATTTCGTTACGGTACATGTGA 59.132 34.615 9.11 0.00 0.00 3.58
349 358 6.542574 AAATTTCGTTACGGTACATGTGAA 57.457 33.333 9.11 0.00 0.00 3.18
350 359 6.730960 AATTTCGTTACGGTACATGTGAAT 57.269 33.333 9.11 0.00 0.00 2.57
351 360 5.518529 TTTCGTTACGGTACATGTGAATG 57.481 39.130 9.11 0.00 0.00 2.67
352 361 2.924926 TCGTTACGGTACATGTGAATGC 59.075 45.455 9.11 0.00 0.00 3.56
353 362 2.668945 CGTTACGGTACATGTGAATGCA 59.331 45.455 9.11 0.00 0.00 3.96
354 363 3.123790 CGTTACGGTACATGTGAATGCAA 59.876 43.478 9.11 0.00 0.00 4.08
355 364 4.647964 GTTACGGTACATGTGAATGCAAG 58.352 43.478 9.11 0.00 0.00 4.01
356 365 2.778299 ACGGTACATGTGAATGCAAGT 58.222 42.857 9.11 0.00 0.00 3.16
357 366 3.932822 ACGGTACATGTGAATGCAAGTA 58.067 40.909 9.11 0.00 0.00 2.24
358 367 3.932710 ACGGTACATGTGAATGCAAGTAG 59.067 43.478 9.11 0.00 0.00 2.57
359 368 4.180817 CGGTACATGTGAATGCAAGTAGA 58.819 43.478 9.11 0.00 0.00 2.59
360 369 4.629634 CGGTACATGTGAATGCAAGTAGAA 59.370 41.667 9.11 0.00 0.00 2.10
361 370 5.294306 CGGTACATGTGAATGCAAGTAGAAT 59.706 40.000 9.11 0.00 0.00 2.40
362 371 6.183360 CGGTACATGTGAATGCAAGTAGAATT 60.183 38.462 9.11 0.00 0.00 2.17
363 372 7.189512 GGTACATGTGAATGCAAGTAGAATTC 58.810 38.462 9.11 0.00 41.91 2.17
371 380 7.939782 TGAATGCAAGTAGAATTCAGAAAACA 58.060 30.769 8.44 0.00 45.46 2.83
372 381 8.579006 TGAATGCAAGTAGAATTCAGAAAACAT 58.421 29.630 8.44 2.04 45.46 2.71
400 409 6.810911 TGTGTAACAGTTTATGCAACCAAAT 58.189 32.000 0.00 0.00 45.67 2.32
411 420 9.255304 GTTTATGCAACCAAATTTTAGAGTTCA 57.745 29.630 0.00 0.00 0.00 3.18
417 426 9.255304 GCAACCAAATTTTAGAGTTCAAACATA 57.745 29.630 0.00 0.00 0.00 2.29
426 435 9.444600 TTTTAGAGTTCAAACATATGTACTCCC 57.555 33.333 23.68 8.98 44.28 4.30
427 436 6.875972 AGAGTTCAAACATATGTACTCCCT 57.124 37.500 23.68 12.59 44.28 4.20
428 437 6.879400 AGAGTTCAAACATATGTACTCCCTC 58.121 40.000 23.68 18.32 44.28 4.30
429 438 6.670027 AGAGTTCAAACATATGTACTCCCTCT 59.330 38.462 23.68 19.69 44.28 3.69
430 439 6.644347 AGTTCAAACATATGTACTCCCTCTG 58.356 40.000 9.21 0.00 0.00 3.35
431 440 6.213600 AGTTCAAACATATGTACTCCCTCTGT 59.786 38.462 9.21 0.00 0.00 3.41
432 441 6.222038 TCAAACATATGTACTCCCTCTGTC 57.778 41.667 9.21 0.00 0.00 3.51
433 442 5.128827 TCAAACATATGTACTCCCTCTGTCC 59.871 44.000 9.21 0.00 0.00 4.02
434 443 4.544564 ACATATGTACTCCCTCTGTCCT 57.455 45.455 6.56 0.00 0.00 3.85
435 444 5.664815 ACATATGTACTCCCTCTGTCCTA 57.335 43.478 6.56 0.00 0.00 2.94
436 445 6.027025 ACATATGTACTCCCTCTGTCCTAA 57.973 41.667 6.56 0.00 0.00 2.69
437 446 6.441222 ACATATGTACTCCCTCTGTCCTAAA 58.559 40.000 6.56 0.00 0.00 1.85
438 447 6.901300 ACATATGTACTCCCTCTGTCCTAAAA 59.099 38.462 6.56 0.00 0.00 1.52
439 448 7.569111 ACATATGTACTCCCTCTGTCCTAAAAT 59.431 37.037 6.56 0.00 0.00 1.82
440 449 9.090103 CATATGTACTCCCTCTGTCCTAAAATA 57.910 37.037 0.00 0.00 0.00 1.40
441 450 7.989947 ATGTACTCCCTCTGTCCTAAAATAA 57.010 36.000 0.00 0.00 0.00 1.40
442 451 7.419711 TGTACTCCCTCTGTCCTAAAATAAG 57.580 40.000 0.00 0.00 0.00 1.73
443 452 6.958192 TGTACTCCCTCTGTCCTAAAATAAGT 59.042 38.462 0.00 0.00 0.00 2.24
444 453 6.301169 ACTCCCTCTGTCCTAAAATAAGTG 57.699 41.667 0.00 0.00 0.00 3.16
445 454 5.785940 ACTCCCTCTGTCCTAAAATAAGTGT 59.214 40.000 0.00 0.00 0.00 3.55
446 455 6.070710 ACTCCCTCTGTCCTAAAATAAGTGTC 60.071 42.308 0.00 0.00 0.00 3.67
447 456 6.023603 TCCCTCTGTCCTAAAATAAGTGTCT 58.976 40.000 0.00 0.00 0.00 3.41
448 457 6.500751 TCCCTCTGTCCTAAAATAAGTGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
449 458 6.595716 CCCTCTGTCCTAAAATAAGTGTCTTG 59.404 42.308 0.00 0.00 0.00 3.02
450 459 7.386851 CCTCTGTCCTAAAATAAGTGTCTTGA 58.613 38.462 0.00 0.00 0.00 3.02
451 460 7.547370 CCTCTGTCCTAAAATAAGTGTCTTGAG 59.453 40.741 0.00 0.00 0.00 3.02
452 461 8.190326 TCTGTCCTAAAATAAGTGTCTTGAGA 57.810 34.615 0.00 0.00 0.00 3.27
453 462 8.088981 TCTGTCCTAAAATAAGTGTCTTGAGAC 58.911 37.037 4.20 4.20 44.97 3.36
495 504 7.845066 AAAGTCGAGATACTTATTTTGGGAC 57.155 36.000 0.00 0.00 38.76 4.46
496 505 5.589192 AGTCGAGATACTTATTTTGGGACG 58.411 41.667 0.00 0.00 0.00 4.79
497 506 4.743644 GTCGAGATACTTATTTTGGGACGG 59.256 45.833 0.00 0.00 0.00 4.79
498 507 4.646040 TCGAGATACTTATTTTGGGACGGA 59.354 41.667 0.00 0.00 0.00 4.69
499 508 4.982916 CGAGATACTTATTTTGGGACGGAG 59.017 45.833 0.00 0.00 0.00 4.63
500 509 5.291905 AGATACTTATTTTGGGACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
501 510 4.966805 AGATACTTATTTTGGGACGGAGGA 59.033 41.667 0.00 0.00 0.00 3.71
502 511 5.427481 AGATACTTATTTTGGGACGGAGGAA 59.573 40.000 0.00 0.00 0.00 3.36
509 518 2.832643 TGGGACGGAGGAAGTATGTA 57.167 50.000 0.00 0.00 0.00 2.29
515 524 4.459330 GACGGAGGAAGTATGTAGTAGGT 58.541 47.826 0.00 0.00 0.00 3.08
520 529 6.149142 CGGAGGAAGTATGTAGTAGGTGTATC 59.851 46.154 0.00 0.00 0.00 2.24
530 539 4.820894 AGTAGGTGTATCCAACAAGACC 57.179 45.455 0.00 0.00 40.63 3.85
542 551 5.626142 TCCAACAAGACCTGTGCTATAAAA 58.374 37.500 0.00 0.00 38.67 1.52
547 556 6.245408 ACAAGACCTGTGCTATAAAAATCCA 58.755 36.000 0.00 0.00 36.69 3.41
549 558 5.815581 AGACCTGTGCTATAAAAATCCACA 58.184 37.500 0.00 0.00 35.39 4.17
550 559 6.245408 AGACCTGTGCTATAAAAATCCACAA 58.755 36.000 0.00 0.00 36.16 3.33
557 566 7.014711 TGTGCTATAAAAATCCACAAAAGACCA 59.985 33.333 0.00 0.00 33.90 4.02
558 567 7.870445 GTGCTATAAAAATCCACAAAAGACCAA 59.130 33.333 0.00 0.00 0.00 3.67
559 568 7.870445 TGCTATAAAAATCCACAAAAGACCAAC 59.130 33.333 0.00 0.00 0.00 3.77
569 579 5.347342 CACAAAAGACCAACATTGTGCTAA 58.653 37.500 4.76 0.00 44.03 3.09
582 592 3.808466 TGTGCTAATTGTGCCACAAAA 57.192 38.095 15.17 5.13 41.96 2.44
584 594 4.701765 TGTGCTAATTGTGCCACAAAAAT 58.298 34.783 15.17 6.73 41.96 1.82
586 596 4.990426 GTGCTAATTGTGCCACAAAAATCT 59.010 37.500 15.17 0.00 41.96 2.40
590 600 7.090173 GCTAATTGTGCCACAAAAATCTAGAA 58.910 34.615 15.17 0.00 41.96 2.10
593 603 8.729805 AATTGTGCCACAAAAATCTAGAAAAA 57.270 26.923 15.17 0.00 41.96 1.94
594 604 7.532682 TTGTGCCACAAAAATCTAGAAAAAC 57.467 32.000 8.02 0.00 34.76 2.43
618 628 8.232913 ACGTGCTAATTTGATATATTTGGGTT 57.767 30.769 0.00 0.00 0.00 4.11
619 629 9.344772 ACGTGCTAATTTGATATATTTGGGTTA 57.655 29.630 0.00 0.00 0.00 2.85
636 646 5.205821 TGGGTTATTCGGTCATCTAGAGAA 58.794 41.667 0.00 0.00 0.00 2.87
647 657 4.035909 GTCATCTAGAGAAGAAGACCGACC 59.964 50.000 0.00 0.00 43.88 4.79
649 659 1.671845 CTAGAGAAGAAGACCGACCCG 59.328 57.143 0.00 0.00 0.00 5.28
651 661 0.170784 GAGAAGAAGACCGACCCGAC 59.829 60.000 0.00 0.00 0.00 4.79
658 668 1.843368 AGACCGACCCGACTGAATTA 58.157 50.000 0.00 0.00 0.00 1.40
677 687 9.893305 CTGAATTAAATTCGGTCTGTTACTTTT 57.107 29.630 0.00 0.00 42.15 2.27
680 690 9.893305 AATTAAATTCGGTCTGTTACTTTTGAG 57.107 29.630 0.00 0.00 0.00 3.02
681 691 5.358298 AATTCGGTCTGTTACTTTTGAGC 57.642 39.130 0.00 0.00 0.00 4.26
682 692 2.856091 CGGTCTGTTACTTTTGAGCG 57.144 50.000 0.00 0.00 42.36 5.03
685 695 2.157863 GGTCTGTTACTTTTGAGCGAGC 59.842 50.000 0.00 0.00 0.00 5.03
697 707 1.917955 TGAGCGAGCGATTTTAGTTCG 59.082 47.619 0.00 0.00 43.48 3.95
709 719 2.965572 TTAGTTCGGTTCATACGGGG 57.034 50.000 0.00 0.00 0.00 5.73
713 723 0.108709 TTCGGTTCATACGGGGTTCG 60.109 55.000 0.00 0.00 45.88 3.95
727 737 1.524008 GGTTCGGGCTTGGTCTTTGG 61.524 60.000 0.00 0.00 0.00 3.28
728 738 1.901464 TTCGGGCTTGGTCTTTGGC 60.901 57.895 0.00 0.00 0.00 4.52
731 741 1.866853 CGGGCTTGGTCTTTGGCTTC 61.867 60.000 0.00 0.00 0.00 3.86
732 742 0.827507 GGGCTTGGTCTTTGGCTTCA 60.828 55.000 0.00 0.00 0.00 3.02
733 743 0.600057 GGCTTGGTCTTTGGCTTCAG 59.400 55.000 0.00 0.00 0.00 3.02
734 744 0.038801 GCTTGGTCTTTGGCTTCAGC 60.039 55.000 0.00 0.00 41.14 4.26
736 746 1.268899 CTTGGTCTTTGGCTTCAGCAG 59.731 52.381 0.30 0.00 44.36 4.24
737 747 0.538057 TGGTCTTTGGCTTCAGCAGG 60.538 55.000 0.30 0.00 44.36 4.85
739 749 1.615384 GGTCTTTGGCTTCAGCAGGAT 60.615 52.381 0.30 0.00 44.36 3.24
740 750 1.742268 GTCTTTGGCTTCAGCAGGATC 59.258 52.381 0.30 0.00 44.36 3.36
741 751 0.731417 CTTTGGCTTCAGCAGGATCG 59.269 55.000 0.30 0.00 44.36 3.69
742 752 0.036732 TTTGGCTTCAGCAGGATCGT 59.963 50.000 0.30 0.00 44.36 3.73
744 754 2.467826 GGCTTCAGCAGGATCGTGC 61.468 63.158 28.53 28.53 44.36 5.34
745 755 1.742880 GCTTCAGCAGGATCGTGCA 60.743 57.895 34.49 17.71 46.60 4.57
748 758 0.249955 TTCAGCAGGATCGTGCATGA 59.750 50.000 34.49 29.23 46.60 3.07
750 760 0.656259 CAGCAGGATCGTGCATGAAG 59.344 55.000 34.49 18.43 46.60 3.02
751 761 1.094073 AGCAGGATCGTGCATGAAGC 61.094 55.000 34.49 14.14 46.60 3.86
762 772 1.689959 GCATGAAGCAGTTTCGTTGG 58.310 50.000 0.00 0.00 44.79 3.77
763 773 1.001378 GCATGAAGCAGTTTCGTTGGT 60.001 47.619 0.00 0.00 44.79 3.67
764 774 2.543653 GCATGAAGCAGTTTCGTTGGTT 60.544 45.455 0.00 0.00 44.79 3.67
765 775 3.705604 CATGAAGCAGTTTCGTTGGTTT 58.294 40.909 0.00 0.00 38.71 3.27
766 776 3.859411 TGAAGCAGTTTCGTTGGTTTT 57.141 38.095 0.00 0.00 38.71 2.43
768 778 5.312120 TGAAGCAGTTTCGTTGGTTTTTA 57.688 34.783 0.00 0.00 38.71 1.52
769 779 5.897050 TGAAGCAGTTTCGTTGGTTTTTAT 58.103 33.333 0.00 0.00 38.71 1.40
771 781 4.048504 AGCAGTTTCGTTGGTTTTTATGC 58.951 39.130 0.00 0.00 0.00 3.14
772 782 3.183574 GCAGTTTCGTTGGTTTTTATGCC 59.816 43.478 0.00 0.00 0.00 4.40
773 783 3.738791 CAGTTTCGTTGGTTTTTATGCCC 59.261 43.478 0.00 0.00 0.00 5.36
774 784 2.708386 TTCGTTGGTTTTTATGCCCG 57.292 45.000 0.00 0.00 0.00 6.13
776 786 0.734597 CGTTGGTTTTTATGCCCGGC 60.735 55.000 1.04 1.04 0.00 6.13
817 1921 2.669569 CGGCCTATGCGGGGAATG 60.670 66.667 0.00 0.00 38.85 2.67
826 1930 0.322997 TGCGGGGAATGGATTCGTTT 60.323 50.000 0.00 0.00 37.67 3.60
829 1933 2.031157 GCGGGGAATGGATTCGTTTATG 60.031 50.000 0.00 0.00 37.67 1.90
838 1942 5.097742 TGGATTCGTTTATGTGGATGACT 57.902 39.130 0.00 0.00 0.00 3.41
839 1943 4.875536 TGGATTCGTTTATGTGGATGACTG 59.124 41.667 0.00 0.00 0.00 3.51
864 1968 2.755103 GGCCCAGAAATTAGAACACTGG 59.245 50.000 0.00 0.00 45.09 4.00
865 1969 3.421844 GCCCAGAAATTAGAACACTGGT 58.578 45.455 0.00 0.00 44.33 4.00
866 1970 4.566907 GGCCCAGAAATTAGAACACTGGTA 60.567 45.833 0.00 0.00 44.33 3.25
867 1971 4.395231 GCCCAGAAATTAGAACACTGGTAC 59.605 45.833 0.00 0.00 44.33 3.34
868 1972 5.556915 CCCAGAAATTAGAACACTGGTACA 58.443 41.667 0.00 0.00 44.33 2.90
869 1973 6.001460 CCCAGAAATTAGAACACTGGTACAA 58.999 40.000 0.00 0.00 44.33 2.41
870 1974 6.149474 CCCAGAAATTAGAACACTGGTACAAG 59.851 42.308 0.00 0.00 44.33 3.16
871 1975 6.710744 CCAGAAATTAGAACACTGGTACAAGT 59.289 38.462 0.00 0.00 41.91 3.16
872 1976 7.876068 CCAGAAATTAGAACACTGGTACAAGTA 59.124 37.037 1.57 0.00 41.91 2.24
873 1977 8.709646 CAGAAATTAGAACACTGGTACAAGTAC 58.290 37.037 1.57 1.77 38.70 2.73
874 1978 8.426489 AGAAATTAGAACACTGGTACAAGTACA 58.574 33.333 1.57 0.00 38.70 2.90
875 1979 8.603242 AAATTAGAACACTGGTACAAGTACAG 57.397 34.615 1.57 9.52 38.70 2.74
876 1980 4.602340 AGAACACTGGTACAAGTACAGG 57.398 45.455 1.57 6.51 38.70 4.00
877 1981 3.965347 AGAACACTGGTACAAGTACAGGT 59.035 43.478 1.57 7.06 38.70 4.00
878 1982 3.746045 ACACTGGTACAAGTACAGGTG 57.254 47.619 21.67 21.67 41.34 4.00
879 1983 2.367567 ACACTGGTACAAGTACAGGTGG 59.632 50.000 24.38 14.46 40.65 4.61
880 1984 2.631062 CACTGGTACAAGTACAGGTGGA 59.369 50.000 1.57 0.00 38.70 4.02
881 1985 2.897969 ACTGGTACAAGTACAGGTGGAG 59.102 50.000 0.00 1.55 38.70 3.86
882 1986 3.162666 CTGGTACAAGTACAGGTGGAGA 58.837 50.000 12.00 0.00 38.70 3.71
883 1987 3.769844 CTGGTACAAGTACAGGTGGAGAT 59.230 47.826 12.00 0.00 38.70 2.75
884 1988 3.513912 TGGTACAAGTACAGGTGGAGATG 59.486 47.826 12.00 0.00 37.78 2.90
885 1989 3.514309 GGTACAAGTACAGGTGGAGATGT 59.486 47.826 12.00 0.00 37.78 3.06
886 1990 4.708421 GGTACAAGTACAGGTGGAGATGTA 59.292 45.833 12.00 0.00 37.78 2.29
887 1991 5.163540 GGTACAAGTACAGGTGGAGATGTAG 60.164 48.000 12.00 0.00 37.78 2.74
888 1992 3.769844 ACAAGTACAGGTGGAGATGTAGG 59.230 47.826 0.00 0.00 32.76 3.18
889 1993 3.759815 AGTACAGGTGGAGATGTAGGT 57.240 47.619 0.00 0.00 32.76 3.08
890 1994 3.366396 AGTACAGGTGGAGATGTAGGTG 58.634 50.000 0.00 0.00 32.76 4.00
891 1995 2.623418 ACAGGTGGAGATGTAGGTGA 57.377 50.000 0.00 0.00 0.00 4.02
892 1996 2.461695 ACAGGTGGAGATGTAGGTGAG 58.538 52.381 0.00 0.00 0.00 3.51
893 1997 1.759445 CAGGTGGAGATGTAGGTGAGG 59.241 57.143 0.00 0.00 0.00 3.86
894 1998 1.362932 AGGTGGAGATGTAGGTGAGGT 59.637 52.381 0.00 0.00 0.00 3.85
895 1999 1.482593 GGTGGAGATGTAGGTGAGGTG 59.517 57.143 0.00 0.00 0.00 4.00
896 2000 2.457598 GTGGAGATGTAGGTGAGGTGA 58.542 52.381 0.00 0.00 0.00 4.02
897 2001 2.428890 GTGGAGATGTAGGTGAGGTGAG 59.571 54.545 0.00 0.00 0.00 3.51
898 2002 2.035632 GGAGATGTAGGTGAGGTGAGG 58.964 57.143 0.00 0.00 0.00 3.86
984 2375 1.929836 CAAAATCCCGAGCGAAGAGAG 59.070 52.381 0.00 0.00 0.00 3.20
990 2381 2.411290 GAGCGAAGAGAGAGGCGG 59.589 66.667 0.00 0.00 0.00 6.13
997 2389 3.077556 GAGAGAGGCGGGCAGGAA 61.078 66.667 3.78 0.00 0.00 3.36
1044 2436 2.443952 ATCCTCCGCCACATCCGA 60.444 61.111 0.00 0.00 0.00 4.55
1387 2799 1.326951 TGGTGATGGCGATCGAGGAA 61.327 55.000 21.57 0.08 0.00 3.36
1510 2922 2.125673 CTTCCGATTGCCGACCGT 60.126 61.111 0.00 0.00 41.76 4.83
1531 2943 1.467920 CCAGGGTGAGGCATTTTCTC 58.532 55.000 0.00 0.00 0.00 2.87
1542 2954 4.610945 AGGCATTTTCTCGTTTCTGTTTG 58.389 39.130 0.00 0.00 0.00 2.93
1600 3012 4.329545 GTCCCTGGTGCTCCGCAA 62.330 66.667 0.00 0.00 41.47 4.85
1601 3013 3.329889 TCCCTGGTGCTCCGCAAT 61.330 61.111 0.00 0.00 41.47 3.56
1602 3014 3.136123 CCCTGGTGCTCCGCAATG 61.136 66.667 0.00 0.00 41.47 2.82
1642 3056 4.458989 TCTTGGATGCAACTGTAACATTCC 59.541 41.667 0.00 0.00 0.00 3.01
1673 3088 1.133513 TGATGAACTGGCCTTGTTGGT 60.134 47.619 17.12 7.31 38.35 3.67
1765 3184 2.254152 TCAGCATTGTACTCCCTCCT 57.746 50.000 0.00 0.00 0.00 3.69
1781 3200 7.112779 ACTCCCTCCTTTCACAAATATAACAG 58.887 38.462 0.00 0.00 0.00 3.16
1782 3201 7.027874 TCCCTCCTTTCACAAATATAACAGT 57.972 36.000 0.00 0.00 0.00 3.55
1860 3279 8.910944 ACACTAAAACGTGTCTATATACATCCT 58.089 33.333 0.00 0.00 44.32 3.24
1861 3280 9.181805 CACTAAAACGTGTCTATATACATCCTG 57.818 37.037 0.00 0.00 0.00 3.86
1862 3281 9.128404 ACTAAAACGTGTCTATATACATCCTGA 57.872 33.333 0.00 0.00 0.00 3.86
1863 3282 9.395707 CTAAAACGTGTCTATATACATCCTGAC 57.604 37.037 0.00 0.00 0.00 3.51
1864 3283 7.584122 AAACGTGTCTATATACATCCTGACT 57.416 36.000 0.00 0.00 0.00 3.41
1865 3284 6.804770 ACGTGTCTATATACATCCTGACTC 57.195 41.667 0.00 0.00 0.00 3.36
1866 3285 6.296803 ACGTGTCTATATACATCCTGACTCA 58.703 40.000 0.00 0.00 0.00 3.41
1867 3286 6.428465 ACGTGTCTATATACATCCTGACTCAG 59.572 42.308 0.00 0.00 0.00 3.35
1868 3287 6.428465 CGTGTCTATATACATCCTGACTCAGT 59.572 42.308 5.32 0.00 0.00 3.41
1870 3289 8.941977 GTGTCTATATACATCCTGACTCAGTAG 58.058 40.741 5.32 0.00 0.00 2.57
1927 3346 8.058847 TGCCTTCTATTGTATAGTGGGATTTTT 58.941 33.333 0.00 0.00 0.00 1.94
1949 3368 2.158827 TCTGCAACCAAGAGTGCAGTTA 60.159 45.455 21.29 4.59 44.32 2.24
1950 3369 2.221169 TGCAACCAAGAGTGCAGTTAG 58.779 47.619 0.00 0.00 31.61 2.34
1953 3372 3.070018 CAACCAAGAGTGCAGTTAGAGG 58.930 50.000 0.00 0.00 0.00 3.69
1954 3373 2.330216 ACCAAGAGTGCAGTTAGAGGT 58.670 47.619 0.00 0.00 0.00 3.85
1956 3375 3.511934 ACCAAGAGTGCAGTTAGAGGTAG 59.488 47.826 0.00 0.00 0.00 3.18
1957 3376 3.511934 CCAAGAGTGCAGTTAGAGGTAGT 59.488 47.826 0.00 0.00 0.00 2.73
1958 3377 4.705507 CCAAGAGTGCAGTTAGAGGTAGTA 59.294 45.833 0.00 0.00 0.00 1.82
1959 3378 5.185249 CCAAGAGTGCAGTTAGAGGTAGTAA 59.815 44.000 0.00 0.00 0.00 2.24
1960 3379 5.900865 AGAGTGCAGTTAGAGGTAGTAAC 57.099 43.478 0.00 0.00 0.00 2.50
1961 3380 5.572252 AGAGTGCAGTTAGAGGTAGTAACT 58.428 41.667 0.00 0.00 40.62 2.24
1962 3381 5.648960 AGAGTGCAGTTAGAGGTAGTAACTC 59.351 44.000 7.15 7.15 38.42 3.01
1963 3382 5.322754 AGTGCAGTTAGAGGTAGTAACTCA 58.677 41.667 17.48 0.95 38.42 3.41
1964 3383 5.183522 AGTGCAGTTAGAGGTAGTAACTCAC 59.816 44.000 17.48 7.68 38.42 3.51
2010 3429 1.073284 GAAAACTGGTCCCTGGTGCTA 59.927 52.381 0.00 0.00 0.00 3.49
2091 3510 5.464168 GTGATGCAATGTTAGCTCTTTTGT 58.536 37.500 0.00 0.00 0.00 2.83
2092 3511 5.344128 GTGATGCAATGTTAGCTCTTTTGTG 59.656 40.000 0.00 0.00 0.00 3.33
2133 3716 7.028361 GTCGCTTATGAACTAACTAGTCTTGT 58.972 38.462 0.00 0.00 34.99 3.16
2145 3728 1.151777 AGTCTTGTTGGTCGCACACG 61.152 55.000 0.00 0.00 42.01 4.49
2150 3733 1.011574 GTTGGTCGCACACGTGTTC 60.012 57.895 20.79 14.22 41.18 3.18
2151 3734 2.174969 TTGGTCGCACACGTGTTCC 61.175 57.895 20.79 18.26 41.18 3.62
2162 3745 0.100503 ACGTGTTCCTTTGTTGCAGC 59.899 50.000 0.00 0.00 0.00 5.25
2167 3750 4.142708 CGTGTTCCTTTGTTGCAGCATATA 60.143 41.667 3.36 0.00 0.00 0.86
2174 3757 7.706159 TCCTTTGTTGCAGCATATATGTTTAG 58.294 34.615 14.14 0.00 0.00 1.85
2226 3810 7.985476 TGTTTACTCCTCATTAGCAATTTAGC 58.015 34.615 0.00 0.00 0.00 3.09
2227 3811 7.609918 TGTTTACTCCTCATTAGCAATTTAGCA 59.390 33.333 0.00 0.00 36.85 3.49
2228 3812 8.624776 GTTTACTCCTCATTAGCAATTTAGCAT 58.375 33.333 0.00 0.00 36.85 3.79
2229 3813 8.752005 TTACTCCTCATTAGCAATTTAGCATT 57.248 30.769 0.00 0.00 36.85 3.56
2230 3814 7.035840 ACTCCTCATTAGCAATTTAGCATTG 57.964 36.000 0.00 0.00 36.85 2.82
2231 3815 6.604795 ACTCCTCATTAGCAATTTAGCATTGT 59.395 34.615 0.00 0.00 36.85 2.71
2232 3816 7.775093 ACTCCTCATTAGCAATTTAGCATTGTA 59.225 33.333 0.00 0.00 36.85 2.41
2299 3883 5.310409 TCTGAATTCTCCTTGACCTTGTT 57.690 39.130 7.05 0.00 0.00 2.83
2300 3884 6.433847 TCTGAATTCTCCTTGACCTTGTTA 57.566 37.500 7.05 0.00 0.00 2.41
2301 3885 7.020827 TCTGAATTCTCCTTGACCTTGTTAT 57.979 36.000 7.05 0.00 0.00 1.89
2303 3887 7.607991 TCTGAATTCTCCTTGACCTTGTTATTC 59.392 37.037 7.05 0.00 0.00 1.75
2304 3888 7.461749 TGAATTCTCCTTGACCTTGTTATTCT 58.538 34.615 7.05 0.00 0.00 2.40
2315 3901 5.193679 ACCTTGTTATTCTCCATAGCAACC 58.806 41.667 0.00 0.00 34.56 3.77
2320 3906 3.853355 ATTCTCCATAGCAACCCAGAG 57.147 47.619 0.00 0.00 0.00 3.35
2397 3983 9.632807 CATTTTTATTCCGACCTACAAATTTCA 57.367 29.630 0.00 0.00 0.00 2.69
2452 4038 4.398988 TGCCATTGATGTCATAACCAAGAC 59.601 41.667 0.00 0.00 35.37 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.717294 ATGGCGGGTGTCTGGGTC 61.717 66.667 0.00 0.00 0.00 4.46
11 12 1.142748 GAGGTCTCAGACATGGCGG 59.857 63.158 7.24 0.00 33.68 6.13
12 13 1.226802 CGAGGTCTCAGACATGGCG 60.227 63.158 7.24 0.00 33.68 5.69
21 22 1.911766 GTTCCCCACCGAGGTCTCA 60.912 63.158 0.00 0.00 34.66 3.27
24 25 3.308705 ACGTTCCCCACCGAGGTC 61.309 66.667 0.00 0.00 34.66 3.85
31 32 2.589442 TTCGTGCACGTTCCCCAC 60.589 61.111 35.74 0.00 40.80 4.61
33 34 3.723348 GCTTCGTGCACGTTCCCC 61.723 66.667 35.74 18.15 42.31 4.81
47 48 0.957395 CGTGGCAACTGGAGATGCTT 60.957 55.000 8.58 0.00 42.51 3.91
101 108 2.822637 ATCCATGCCGGGGTGCTAG 61.823 63.158 2.18 0.00 34.36 3.42
103 110 4.511246 CATCCATGCCGGGGTGCT 62.511 66.667 2.18 0.00 31.06 4.40
113 120 1.940883 AAGCAAGCGCACCATCCATG 61.941 55.000 11.47 0.00 42.27 3.66
123 130 1.650645 GCTCAATACAAAAGCAAGCGC 59.349 47.619 0.00 0.00 36.06 5.92
124 131 2.932498 TGCTCAATACAAAAGCAAGCG 58.068 42.857 0.00 0.00 42.71 4.68
153 160 1.377229 CGGTTTAAGCCCACCTCCA 59.623 57.895 2.36 0.00 0.00 3.86
164 171 2.600470 AGACGGAACACACGGTTTAA 57.400 45.000 0.00 0.00 40.63 1.52
165 172 2.600470 AAGACGGAACACACGGTTTA 57.400 45.000 0.00 0.00 40.63 2.01
166 173 1.741528 AAAGACGGAACACACGGTTT 58.258 45.000 0.00 0.00 40.63 3.27
169 176 0.231279 CGAAAAGACGGAACACACGG 59.769 55.000 0.00 0.00 35.23 4.94
179 188 1.064952 ACCAAGCAAACCGAAAAGACG 59.935 47.619 0.00 0.00 0.00 4.18
196 205 4.393680 CGGAAAGATCAATAAACCGAACCA 59.606 41.667 0.00 0.00 41.09 3.67
197 206 4.632688 TCGGAAAGATCAATAAACCGAACC 59.367 41.667 0.00 0.00 43.61 3.62
217 226 6.127647 TGGAAATCAAATTCTTGGAAGATCGG 60.128 38.462 0.00 0.00 34.49 4.18
236 245 5.110814 TCCGGTGATCAACTATTGGAAAT 57.889 39.130 9.52 0.00 0.00 2.17
238 247 4.561500 TTCCGGTGATCAACTATTGGAA 57.438 40.909 12.31 12.31 32.18 3.53
240 249 4.450976 TGATTCCGGTGATCAACTATTGG 58.549 43.478 17.09 2.42 0.00 3.16
241 250 6.624352 AATGATTCCGGTGATCAACTATTG 57.376 37.500 21.23 0.00 0.00 1.90
242 251 6.017934 CGAAATGATTCCGGTGATCAACTATT 60.018 38.462 21.23 15.28 31.52 1.73
243 252 5.466728 CGAAATGATTCCGGTGATCAACTAT 59.533 40.000 21.23 11.40 31.52 2.12
244 253 4.808895 CGAAATGATTCCGGTGATCAACTA 59.191 41.667 21.23 0.00 31.52 2.24
245 254 3.623060 CGAAATGATTCCGGTGATCAACT 59.377 43.478 21.23 13.86 31.52 3.16
246 255 3.242739 CCGAAATGATTCCGGTGATCAAC 60.243 47.826 21.23 0.00 31.52 3.18
247 256 2.942376 CCGAAATGATTCCGGTGATCAA 59.058 45.455 21.23 1.49 31.52 2.57
248 257 2.093181 ACCGAAATGATTCCGGTGATCA 60.093 45.455 7.93 20.17 39.40 2.92
249 258 2.561569 ACCGAAATGATTCCGGTGATC 58.438 47.619 7.93 7.49 39.40 2.92
250 259 2.710096 ACCGAAATGATTCCGGTGAT 57.290 45.000 7.93 0.00 39.40 3.06
251 260 2.027561 AGAACCGAAATGATTCCGGTGA 60.028 45.455 9.78 0.00 40.16 4.02
252 261 2.356135 AGAACCGAAATGATTCCGGTG 58.644 47.619 9.78 0.00 40.16 4.94
253 262 2.747446 CAAGAACCGAAATGATTCCGGT 59.253 45.455 1.57 1.57 41.21 5.28
254 263 2.097466 CCAAGAACCGAAATGATTCCGG 59.903 50.000 0.00 0.00 36.18 5.14
255 264 2.747446 ACCAAGAACCGAAATGATTCCG 59.253 45.455 0.00 0.00 31.52 4.30
256 265 4.459337 AGAACCAAGAACCGAAATGATTCC 59.541 41.667 0.00 0.00 31.52 3.01
257 266 5.629079 AGAACCAAGAACCGAAATGATTC 57.371 39.130 0.00 0.00 0.00 2.52
258 267 5.534654 TGAAGAACCAAGAACCGAAATGATT 59.465 36.000 0.00 0.00 0.00 2.57
259 268 5.048713 GTGAAGAACCAAGAACCGAAATGAT 60.049 40.000 0.00 0.00 0.00 2.45
260 269 4.274950 GTGAAGAACCAAGAACCGAAATGA 59.725 41.667 0.00 0.00 0.00 2.57
261 270 4.537015 GTGAAGAACCAAGAACCGAAATG 58.463 43.478 0.00 0.00 0.00 2.32
262 271 4.830826 GTGAAGAACCAAGAACCGAAAT 57.169 40.909 0.00 0.00 0.00 2.17
275 284 1.087501 GGGAGCGAATGGTGAAGAAC 58.912 55.000 0.00 0.00 0.00 3.01
276 285 0.035439 GGGGAGCGAATGGTGAAGAA 60.035 55.000 0.00 0.00 0.00 2.52
277 286 1.602237 GGGGAGCGAATGGTGAAGA 59.398 57.895 0.00 0.00 0.00 2.87
278 287 1.815421 CGGGGAGCGAATGGTGAAG 60.815 63.158 0.00 0.00 0.00 3.02
279 288 2.267642 CGGGGAGCGAATGGTGAA 59.732 61.111 0.00 0.00 0.00 3.18
280 289 3.781307 CCGGGGAGCGAATGGTGA 61.781 66.667 0.00 0.00 0.00 4.02
281 290 3.106986 ATCCGGGGAGCGAATGGTG 62.107 63.158 0.00 0.00 0.00 4.17
282 291 2.768344 ATCCGGGGAGCGAATGGT 60.768 61.111 0.00 0.00 0.00 3.55
283 292 2.281070 CATCCGGGGAGCGAATGG 60.281 66.667 0.00 0.00 0.00 3.16
284 293 2.281070 CCATCCGGGGAGCGAATG 60.281 66.667 0.00 0.00 0.00 2.67
285 294 2.768344 ACCATCCGGGGAGCGAAT 60.768 61.111 0.00 0.00 42.91 3.34
286 295 3.781307 CACCATCCGGGGAGCGAA 61.781 66.667 0.00 0.00 38.36 4.70
288 297 4.096003 AACACCATCCGGGGAGCG 62.096 66.667 0.00 0.00 38.36 5.03
289 298 2.124695 GAACACCATCCGGGGAGC 60.125 66.667 0.00 0.00 38.36 4.70
290 299 2.186903 CGAACACCATCCGGGGAG 59.813 66.667 0.00 0.00 38.36 4.30
291 300 3.395702 CCGAACACCATCCGGGGA 61.396 66.667 0.00 0.00 38.36 4.81
293 302 4.096003 AGCCGAACACCATCCGGG 62.096 66.667 0.00 0.00 43.17 5.73
294 303 2.511600 GAGCCGAACACCATCCGG 60.512 66.667 0.00 0.00 45.51 5.14
295 304 1.811266 CAGAGCCGAACACCATCCG 60.811 63.158 0.00 0.00 0.00 4.18
296 305 0.179000 ATCAGAGCCGAACACCATCC 59.821 55.000 0.00 0.00 0.00 3.51
297 306 2.029838 AATCAGAGCCGAACACCATC 57.970 50.000 0.00 0.00 0.00 3.51
298 307 3.627395 TTAATCAGAGCCGAACACCAT 57.373 42.857 0.00 0.00 0.00 3.55
299 308 3.410631 TTTAATCAGAGCCGAACACCA 57.589 42.857 0.00 0.00 0.00 4.17
300 309 3.938963 TCATTTAATCAGAGCCGAACACC 59.061 43.478 0.00 0.00 0.00 4.16
301 310 5.122396 AGTTCATTTAATCAGAGCCGAACAC 59.878 40.000 0.00 0.00 35.19 3.32
302 311 5.245531 AGTTCATTTAATCAGAGCCGAACA 58.754 37.500 0.00 0.00 35.19 3.18
303 312 5.803020 AGTTCATTTAATCAGAGCCGAAC 57.197 39.130 0.00 0.00 33.41 3.95
304 313 7.915293 TTTAGTTCATTTAATCAGAGCCGAA 57.085 32.000 0.00 0.00 0.00 4.30
305 314 8.506168 AATTTAGTTCATTTAATCAGAGCCGA 57.494 30.769 0.00 0.00 0.00 5.54
306 315 9.226345 GAAATTTAGTTCATTTAATCAGAGCCG 57.774 33.333 0.00 0.00 0.00 5.52
307 316 9.226345 CGAAATTTAGTTCATTTAATCAGAGCC 57.774 33.333 0.00 0.00 0.00 4.70
308 317 9.774742 ACGAAATTTAGTTCATTTAATCAGAGC 57.225 29.630 0.00 0.00 0.00 4.09
317 326 8.772705 TGTACCGTAACGAAATTTAGTTCATTT 58.227 29.630 18.32 6.70 0.00 2.32
318 327 8.309163 TGTACCGTAACGAAATTTAGTTCATT 57.691 30.769 18.32 6.40 0.00 2.57
319 328 7.887996 TGTACCGTAACGAAATTTAGTTCAT 57.112 32.000 18.32 7.13 0.00 2.57
320 329 7.384660 ACATGTACCGTAACGAAATTTAGTTCA 59.615 33.333 18.32 10.62 0.00 3.18
321 330 7.685304 CACATGTACCGTAACGAAATTTAGTTC 59.315 37.037 18.32 10.42 0.00 3.01
322 331 7.384660 TCACATGTACCGTAACGAAATTTAGTT 59.615 33.333 18.70 18.70 0.00 2.24
323 332 6.867816 TCACATGTACCGTAACGAAATTTAGT 59.132 34.615 0.00 0.00 0.00 2.24
324 333 7.280730 TCACATGTACCGTAACGAAATTTAG 57.719 36.000 0.00 0.00 0.00 1.85
325 334 7.649370 TTCACATGTACCGTAACGAAATTTA 57.351 32.000 0.00 0.00 0.00 1.40
326 335 6.542574 TTCACATGTACCGTAACGAAATTT 57.457 33.333 0.00 0.00 0.00 1.82
327 336 6.539324 CATTCACATGTACCGTAACGAAATT 58.461 36.000 0.00 0.00 0.00 1.82
328 337 5.446741 GCATTCACATGTACCGTAACGAAAT 60.447 40.000 0.00 0.00 32.28 2.17
329 338 4.143073 GCATTCACATGTACCGTAACGAAA 60.143 41.667 0.00 0.00 32.28 3.46
330 339 3.368539 GCATTCACATGTACCGTAACGAA 59.631 43.478 0.00 0.00 32.28 3.85
331 340 2.924926 GCATTCACATGTACCGTAACGA 59.075 45.455 0.00 0.00 32.28 3.85
332 341 2.668945 TGCATTCACATGTACCGTAACG 59.331 45.455 0.00 0.00 32.28 3.18
333 342 4.153475 ACTTGCATTCACATGTACCGTAAC 59.847 41.667 0.00 0.00 32.28 2.50
334 343 4.320023 ACTTGCATTCACATGTACCGTAA 58.680 39.130 0.00 0.00 32.28 3.18
335 344 3.932822 ACTTGCATTCACATGTACCGTA 58.067 40.909 0.00 0.00 32.28 4.02
336 345 2.778299 ACTTGCATTCACATGTACCGT 58.222 42.857 0.00 0.00 32.28 4.83
337 346 4.180817 TCTACTTGCATTCACATGTACCG 58.819 43.478 0.00 0.00 32.28 4.02
338 347 6.683974 ATTCTACTTGCATTCACATGTACC 57.316 37.500 0.00 0.00 32.28 3.34
339 348 7.751732 TGAATTCTACTTGCATTCACATGTAC 58.248 34.615 7.05 0.00 34.34 2.90
340 349 7.823799 TCTGAATTCTACTTGCATTCACATGTA 59.176 33.333 7.05 0.00 34.34 2.29
341 350 6.656270 TCTGAATTCTACTTGCATTCACATGT 59.344 34.615 7.05 0.00 34.34 3.21
342 351 7.080353 TCTGAATTCTACTTGCATTCACATG 57.920 36.000 7.05 0.00 34.34 3.21
343 352 7.692460 TTCTGAATTCTACTTGCATTCACAT 57.308 32.000 7.05 0.00 34.34 3.21
344 353 7.509141 TTTCTGAATTCTACTTGCATTCACA 57.491 32.000 7.05 0.00 34.34 3.58
345 354 7.862372 TGTTTTCTGAATTCTACTTGCATTCAC 59.138 33.333 7.05 0.00 34.34 3.18
346 355 7.939782 TGTTTTCTGAATTCTACTTGCATTCA 58.060 30.769 7.05 0.00 36.30 2.57
347 356 8.857216 CATGTTTTCTGAATTCTACTTGCATTC 58.143 33.333 7.05 0.00 0.00 2.67
348 357 8.362639 ACATGTTTTCTGAATTCTACTTGCATT 58.637 29.630 7.05 0.00 0.00 3.56
349 358 7.889469 ACATGTTTTCTGAATTCTACTTGCAT 58.111 30.769 7.05 2.71 0.00 3.96
350 359 7.275888 ACATGTTTTCTGAATTCTACTTGCA 57.724 32.000 7.05 0.44 0.00 4.08
351 360 9.282247 CATACATGTTTTCTGAATTCTACTTGC 57.718 33.333 2.30 0.00 0.00 4.01
354 363 9.507329 ACACATACATGTTTTCTGAATTCTACT 57.493 29.630 2.30 0.00 39.39 2.57
358 367 9.891828 TGTTACACATACATGTTTTCTGAATTC 57.108 29.630 2.30 0.00 39.39 2.17
359 368 9.897744 CTGTTACACATACATGTTTTCTGAATT 57.102 29.630 2.30 0.00 39.39 2.17
360 369 9.066892 ACTGTTACACATACATGTTTTCTGAAT 57.933 29.630 2.30 0.00 39.39 2.57
361 370 8.445275 ACTGTTACACATACATGTTTTCTGAA 57.555 30.769 2.30 0.00 39.39 3.02
362 371 8.445275 AACTGTTACACATACATGTTTTCTGA 57.555 30.769 2.30 0.00 39.39 3.27
366 375 9.405587 GCATAAACTGTTACACATACATGTTTT 57.594 29.630 2.30 0.00 39.39 2.43
367 376 8.572185 TGCATAAACTGTTACACATACATGTTT 58.428 29.630 2.30 0.00 39.39 2.83
368 377 8.105097 TGCATAAACTGTTACACATACATGTT 57.895 30.769 2.30 0.00 39.39 2.71
369 378 7.680442 TGCATAAACTGTTACACATACATGT 57.320 32.000 2.69 2.69 42.84 3.21
370 379 7.484641 GGTTGCATAAACTGTTACACATACATG 59.515 37.037 0.00 0.00 38.92 3.21
371 380 7.175816 TGGTTGCATAAACTGTTACACATACAT 59.824 33.333 0.00 0.00 38.92 2.29
372 381 6.486993 TGGTTGCATAAACTGTTACACATACA 59.513 34.615 0.00 0.00 38.92 2.29
400 409 9.444600 GGGAGTACATATGTTTGAACTCTAAAA 57.555 33.333 25.14 0.48 33.01 1.52
411 420 5.281314 AGGACAGAGGGAGTACATATGTTT 58.719 41.667 14.77 2.80 0.00 2.83
417 426 7.624077 ACTTATTTTAGGACAGAGGGAGTACAT 59.376 37.037 0.00 0.00 0.00 2.29
419 428 7.093421 ACACTTATTTTAGGACAGAGGGAGTAC 60.093 40.741 0.00 0.00 0.00 2.73
420 429 6.958192 ACACTTATTTTAGGACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
421 430 5.785940 ACACTTATTTTAGGACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
422 431 6.155393 AGACACTTATTTTAGGACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
423 432 6.023603 AGACACTTATTTTAGGACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
424 433 6.301169 AGACACTTATTTTAGGACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
425 434 7.386851 TCAAGACACTTATTTTAGGACAGAGG 58.613 38.462 0.00 0.00 0.00 3.69
426 435 8.307483 TCTCAAGACACTTATTTTAGGACAGAG 58.693 37.037 0.00 0.00 0.00 3.35
427 436 8.088981 GTCTCAAGACACTTATTTTAGGACAGA 58.911 37.037 5.28 0.00 44.18 3.41
428 437 8.245701 GTCTCAAGACACTTATTTTAGGACAG 57.754 38.462 5.28 0.00 44.18 3.51
444 453 4.622701 AACTTTGCAAGTGTCTCAAGAC 57.377 40.909 0.00 3.13 41.91 3.01
445 454 8.621532 AATATAACTTTGCAAGTGTCTCAAGA 57.378 30.769 0.00 0.00 41.91 3.02
451 460 9.262472 CGACTTTAATATAACTTTGCAAGTGTC 57.738 33.333 0.00 1.01 41.91 3.67
452 461 8.995220 TCGACTTTAATATAACTTTGCAAGTGT 58.005 29.630 0.00 0.00 41.91 3.55
453 462 9.478019 CTCGACTTTAATATAACTTTGCAAGTG 57.522 33.333 0.00 0.00 41.91 3.16
454 463 9.431887 TCTCGACTTTAATATAACTTTGCAAGT 57.568 29.630 0.00 0.00 45.46 3.16
469 478 9.374838 GTCCCAAAATAAGTATCTCGACTTTAA 57.625 33.333 0.00 0.00 40.22 1.52
470 479 7.703621 CGTCCCAAAATAAGTATCTCGACTTTA 59.296 37.037 0.00 0.00 40.22 1.85
471 480 6.534079 CGTCCCAAAATAAGTATCTCGACTTT 59.466 38.462 0.00 0.00 40.22 2.66
472 481 6.040878 CGTCCCAAAATAAGTATCTCGACTT 58.959 40.000 0.00 0.00 42.35 3.01
473 482 5.451520 CCGTCCCAAAATAAGTATCTCGACT 60.452 44.000 0.00 0.00 0.00 4.18
474 483 4.743644 CCGTCCCAAAATAAGTATCTCGAC 59.256 45.833 0.00 0.00 0.00 4.20
475 484 4.646040 TCCGTCCCAAAATAAGTATCTCGA 59.354 41.667 0.00 0.00 0.00 4.04
476 485 4.940463 TCCGTCCCAAAATAAGTATCTCG 58.060 43.478 0.00 0.00 0.00 4.04
477 486 5.070047 TCCTCCGTCCCAAAATAAGTATCTC 59.930 44.000 0.00 0.00 0.00 2.75
478 487 4.966805 TCCTCCGTCCCAAAATAAGTATCT 59.033 41.667 0.00 0.00 0.00 1.98
479 488 5.286267 TCCTCCGTCCCAAAATAAGTATC 57.714 43.478 0.00 0.00 0.00 2.24
480 489 5.191124 ACTTCCTCCGTCCCAAAATAAGTAT 59.809 40.000 0.00 0.00 0.00 2.12
481 490 4.533311 ACTTCCTCCGTCCCAAAATAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
482 491 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
483 492 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
484 493 5.045432 ACATACTTCCTCCGTCCCAAAATAA 60.045 40.000 0.00 0.00 0.00 1.40
485 494 4.472108 ACATACTTCCTCCGTCCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
486 495 3.265995 ACATACTTCCTCCGTCCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
487 496 2.640826 ACATACTTCCTCCGTCCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
488 497 2.262637 ACATACTTCCTCCGTCCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
489 498 1.946984 ACATACTTCCTCCGTCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
490 499 2.024655 ACTACATACTTCCTCCGTCCCA 60.025 50.000 0.00 0.00 0.00 4.37
491 500 2.664015 ACTACATACTTCCTCCGTCCC 58.336 52.381 0.00 0.00 0.00 4.46
492 501 3.819902 CCTACTACATACTTCCTCCGTCC 59.180 52.174 0.00 0.00 0.00 4.79
493 502 4.275443 CACCTACTACATACTTCCTCCGTC 59.725 50.000 0.00 0.00 0.00 4.79
494 503 4.205587 CACCTACTACATACTTCCTCCGT 58.794 47.826 0.00 0.00 0.00 4.69
495 504 4.205587 ACACCTACTACATACTTCCTCCG 58.794 47.826 0.00 0.00 0.00 4.63
496 505 6.433716 GGATACACCTACTACATACTTCCTCC 59.566 46.154 0.00 0.00 35.41 4.30
497 506 7.002879 TGGATACACCTACTACATACTTCCTC 58.997 42.308 0.00 0.00 46.17 3.71
498 507 6.919158 TGGATACACCTACTACATACTTCCT 58.081 40.000 0.00 0.00 46.17 3.36
520 529 5.957842 TTTTATAGCACAGGTCTTGTTGG 57.042 39.130 0.00 0.00 38.16 3.77
530 539 7.542130 GGTCTTTTGTGGATTTTTATAGCACAG 59.458 37.037 0.00 0.00 0.00 3.66
542 551 5.358922 CACAATGTTGGTCTTTTGTGGATT 58.641 37.500 6.72 0.00 0.00 3.01
547 556 5.590530 TTAGCACAATGTTGGTCTTTTGT 57.409 34.783 0.00 0.00 0.00 2.83
549 558 6.479660 CACAATTAGCACAATGTTGGTCTTTT 59.520 34.615 0.00 0.00 0.00 2.27
550 559 5.984926 CACAATTAGCACAATGTTGGTCTTT 59.015 36.000 0.00 0.00 0.00 2.52
557 566 3.069300 TGTGGCACAATTAGCACAATGTT 59.931 39.130 19.74 0.00 44.16 2.71
558 567 2.627221 TGTGGCACAATTAGCACAATGT 59.373 40.909 19.74 0.00 44.16 2.71
559 568 3.300852 TGTGGCACAATTAGCACAATG 57.699 42.857 19.74 0.00 44.16 2.82
569 579 7.042791 CGTTTTTCTAGATTTTTGTGGCACAAT 60.043 33.333 31.51 18.54 44.16 2.71
590 600 9.528018 CCCAAATATATCAAATTAGCACGTTTT 57.472 29.630 0.00 0.00 0.00 2.43
593 603 7.817418 ACCCAAATATATCAAATTAGCACGT 57.183 32.000 0.00 0.00 0.00 4.49
604 614 8.602424 AGATGACCGAATAACCCAAATATATCA 58.398 33.333 0.00 0.00 0.00 2.15
608 618 8.202461 TCTAGATGACCGAATAACCCAAATAT 57.798 34.615 0.00 0.00 0.00 1.28
612 622 5.205821 TCTCTAGATGACCGAATAACCCAA 58.794 41.667 0.00 0.00 0.00 4.12
618 628 7.499321 GTCTTCTTCTCTAGATGACCGAATA 57.501 40.000 0.00 0.00 45.51 1.75
619 629 6.385649 GTCTTCTTCTCTAGATGACCGAAT 57.614 41.667 0.00 0.00 45.51 3.34
620 630 5.821516 GTCTTCTTCTCTAGATGACCGAA 57.178 43.478 0.00 0.00 45.51 4.30
636 646 0.538977 TTCAGTCGGGTCGGTCTTCT 60.539 55.000 0.00 0.00 0.00 2.85
649 659 8.252964 AGTAACAGACCGAATTTAATTCAGTC 57.747 34.615 20.36 20.36 43.62 3.51
651 661 9.893305 AAAAGTAACAGACCGAATTTAATTCAG 57.107 29.630 16.57 8.65 39.22 3.02
658 668 5.560183 CGCTCAAAAGTAACAGACCGAATTT 60.560 40.000 0.00 0.00 0.00 1.82
669 679 3.724295 AATCGCTCGCTCAAAAGTAAC 57.276 42.857 0.00 0.00 0.00 2.50
671 681 4.927425 ACTAAAATCGCTCGCTCAAAAGTA 59.073 37.500 0.00 0.00 0.00 2.24
673 683 4.327854 ACTAAAATCGCTCGCTCAAAAG 57.672 40.909 0.00 0.00 0.00 2.27
677 687 1.917955 CGAACTAAAATCGCTCGCTCA 59.082 47.619 0.00 0.00 33.07 4.26
680 690 0.997196 ACCGAACTAAAATCGCTCGC 59.003 50.000 0.00 0.00 38.93 5.03
681 691 2.664568 TGAACCGAACTAAAATCGCTCG 59.335 45.455 0.00 0.00 38.93 5.03
682 692 4.859629 ATGAACCGAACTAAAATCGCTC 57.140 40.909 0.00 0.00 38.93 5.03
685 695 4.026310 CCCGTATGAACCGAACTAAAATCG 60.026 45.833 0.00 0.00 39.92 3.34
697 707 1.153309 CCCGAACCCCGTATGAACC 60.153 63.158 0.00 0.00 36.31 3.62
709 719 1.956802 CCAAAGACCAAGCCCGAAC 59.043 57.895 0.00 0.00 0.00 3.95
713 723 0.827507 TGAAGCCAAAGACCAAGCCC 60.828 55.000 0.00 0.00 0.00 5.19
727 737 1.094073 ATGCACGATCCTGCTGAAGC 61.094 55.000 16.16 0.00 38.07 3.86
728 738 0.656259 CATGCACGATCCTGCTGAAG 59.344 55.000 16.16 2.28 38.07 3.02
731 741 0.656259 CTTCATGCACGATCCTGCTG 59.344 55.000 16.16 11.95 38.07 4.41
732 742 1.094073 GCTTCATGCACGATCCTGCT 61.094 55.000 16.16 1.61 42.31 4.24
733 743 1.354506 GCTTCATGCACGATCCTGC 59.645 57.895 9.48 9.48 42.31 4.85
744 754 3.354089 AACCAACGAAACTGCTTCATG 57.646 42.857 0.00 0.00 33.17 3.07
745 755 4.385358 AAAACCAACGAAACTGCTTCAT 57.615 36.364 0.00 0.00 33.17 2.57
748 758 4.506288 GCATAAAAACCAACGAAACTGCTT 59.494 37.500 0.00 0.00 0.00 3.91
750 760 3.183574 GGCATAAAAACCAACGAAACTGC 59.816 43.478 0.00 0.00 0.00 4.40
751 761 3.738791 GGGCATAAAAACCAACGAAACTG 59.261 43.478 0.00 0.00 0.00 3.16
752 762 3.551250 CGGGCATAAAAACCAACGAAACT 60.551 43.478 0.00 0.00 0.00 2.66
754 764 2.288273 CCGGGCATAAAAACCAACGAAA 60.288 45.455 0.00 0.00 0.00 3.46
757 767 0.734597 GCCGGGCATAAAAACCAACG 60.735 55.000 15.62 0.00 0.00 4.10
762 772 0.455815 CTGAGGCCGGGCATAAAAAC 59.544 55.000 31.59 11.90 0.00 2.43
763 773 0.682855 CCTGAGGCCGGGCATAAAAA 60.683 55.000 31.59 7.43 30.88 1.94
764 774 1.077068 CCTGAGGCCGGGCATAAAA 60.077 57.895 31.59 9.28 30.88 1.52
765 775 2.305607 ACCTGAGGCCGGGCATAAA 61.306 57.895 31.59 11.18 42.81 1.40
766 776 2.690881 ACCTGAGGCCGGGCATAA 60.691 61.111 31.59 13.86 42.81 1.90
776 786 4.039092 CCACCAGCCCACCTGAGG 62.039 72.222 0.00 0.00 44.64 3.86
805 1909 0.762418 ACGAATCCATTCCCCGCATA 59.238 50.000 0.00 0.00 33.28 3.14
817 1921 4.273480 CCAGTCATCCACATAAACGAATCC 59.727 45.833 0.00 0.00 0.00 3.01
826 1930 0.546122 GCCCACCAGTCATCCACATA 59.454 55.000 0.00 0.00 0.00 2.29
829 1933 2.044946 GGCCCACCAGTCATCCAC 60.045 66.667 0.00 0.00 35.26 4.02
839 1943 2.100197 GTTCTAATTTCTGGGCCCACC 58.900 52.381 24.45 0.00 40.81 4.61
864 1968 4.803098 ACATCTCCACCTGTACTTGTAC 57.197 45.455 4.14 4.14 0.00 2.90
865 1969 4.954202 CCTACATCTCCACCTGTACTTGTA 59.046 45.833 0.00 0.00 0.00 2.41
866 1970 3.769844 CCTACATCTCCACCTGTACTTGT 59.230 47.826 0.00 0.00 0.00 3.16
867 1971 3.769844 ACCTACATCTCCACCTGTACTTG 59.230 47.826 0.00 0.00 0.00 3.16
868 1972 3.769844 CACCTACATCTCCACCTGTACTT 59.230 47.826 0.00 0.00 0.00 2.24
869 1973 3.011369 TCACCTACATCTCCACCTGTACT 59.989 47.826 0.00 0.00 0.00 2.73
870 1974 3.362706 TCACCTACATCTCCACCTGTAC 58.637 50.000 0.00 0.00 0.00 2.90
871 1975 3.627492 CCTCACCTACATCTCCACCTGTA 60.627 52.174 0.00 0.00 0.00 2.74
872 1976 2.461695 CTCACCTACATCTCCACCTGT 58.538 52.381 0.00 0.00 0.00 4.00
873 1977 1.759445 CCTCACCTACATCTCCACCTG 59.241 57.143 0.00 0.00 0.00 4.00
874 1978 1.362932 ACCTCACCTACATCTCCACCT 59.637 52.381 0.00 0.00 0.00 4.00
875 1979 1.482593 CACCTCACCTACATCTCCACC 59.517 57.143 0.00 0.00 0.00 4.61
876 1980 2.428890 CTCACCTCACCTACATCTCCAC 59.571 54.545 0.00 0.00 0.00 4.02
877 1981 2.624293 CCTCACCTCACCTACATCTCCA 60.624 54.545 0.00 0.00 0.00 3.86
878 1982 2.035632 CCTCACCTCACCTACATCTCC 58.964 57.143 0.00 0.00 0.00 3.71
879 1983 2.691011 GACCTCACCTCACCTACATCTC 59.309 54.545 0.00 0.00 0.00 2.75
880 1984 2.043115 TGACCTCACCTCACCTACATCT 59.957 50.000 0.00 0.00 0.00 2.90
881 1985 2.457598 TGACCTCACCTCACCTACATC 58.542 52.381 0.00 0.00 0.00 3.06
882 1986 2.623418 TGACCTCACCTCACCTACAT 57.377 50.000 0.00 0.00 0.00 2.29
883 1987 2.391926 TTGACCTCACCTCACCTACA 57.608 50.000 0.00 0.00 0.00 2.74
884 1988 3.764237 TTTTGACCTCACCTCACCTAC 57.236 47.619 0.00 0.00 0.00 3.18
885 1989 4.349636 TGATTTTTGACCTCACCTCACCTA 59.650 41.667 0.00 0.00 0.00 3.08
886 1990 3.138283 TGATTTTTGACCTCACCTCACCT 59.862 43.478 0.00 0.00 0.00 4.00
887 1991 3.486383 TGATTTTTGACCTCACCTCACC 58.514 45.455 0.00 0.00 0.00 4.02
888 1992 4.023707 CACTGATTTTTGACCTCACCTCAC 60.024 45.833 0.00 0.00 0.00 3.51
889 1993 4.136796 CACTGATTTTTGACCTCACCTCA 58.863 43.478 0.00 0.00 0.00 3.86
890 1994 4.389374 TCACTGATTTTTGACCTCACCTC 58.611 43.478 0.00 0.00 0.00 3.85
891 1995 4.392940 CTCACTGATTTTTGACCTCACCT 58.607 43.478 0.00 0.00 0.00 4.00
892 1996 3.503748 CCTCACTGATTTTTGACCTCACC 59.496 47.826 0.00 0.00 0.00 4.02
893 1997 3.503748 CCCTCACTGATTTTTGACCTCAC 59.496 47.826 0.00 0.00 0.00 3.51
894 1998 3.498481 CCCCTCACTGATTTTTGACCTCA 60.498 47.826 0.00 0.00 0.00 3.86
895 1999 3.084786 CCCCTCACTGATTTTTGACCTC 58.915 50.000 0.00 0.00 0.00 3.85
896 2000 2.716424 TCCCCTCACTGATTTTTGACCT 59.284 45.455 0.00 0.00 0.00 3.85
897 2001 3.154827 TCCCCTCACTGATTTTTGACC 57.845 47.619 0.00 0.00 0.00 4.02
898 2002 3.696548 GGATCCCCTCACTGATTTTTGAC 59.303 47.826 0.00 0.00 0.00 3.18
984 2375 1.821332 CATCTTTCCTGCCCGCCTC 60.821 63.158 0.00 0.00 0.00 4.70
990 2381 3.521796 GCCGCCATCTTTCCTGCC 61.522 66.667 0.00 0.00 0.00 4.85
1137 2529 4.295119 GTGAGGTGGGCGTCGTGT 62.295 66.667 0.00 0.00 32.59 4.49
1387 2799 1.754226 GGGATCTCGAGCTTGAACTCT 59.246 52.381 7.81 0.00 34.35 3.24
1456 2868 3.575247 ATGGGGTGGTTGGCGACA 61.575 61.111 7.28 0.00 39.83 4.35
1514 2926 0.693049 ACGAGAAAATGCCTCACCCT 59.307 50.000 0.00 0.00 0.00 4.34
1524 2936 4.211920 TCCCCAAACAGAAACGAGAAAAT 58.788 39.130 0.00 0.00 0.00 1.82
1531 2943 3.081061 TCATCATCCCCAAACAGAAACG 58.919 45.455 0.00 0.00 0.00 3.60
1542 2954 5.634118 TCCAGTCAATTATTCATCATCCCC 58.366 41.667 0.00 0.00 0.00 4.81
1600 3012 0.535335 ACCAATAGCGACCGACACAT 59.465 50.000 0.00 0.00 0.00 3.21
1601 3013 0.108992 GACCAATAGCGACCGACACA 60.109 55.000 0.00 0.00 0.00 3.72
1602 3014 0.172803 AGACCAATAGCGACCGACAC 59.827 55.000 0.00 0.00 0.00 3.67
1642 3056 1.010935 AGTTCATCAGCGACACTGCG 61.011 55.000 0.00 0.00 46.76 5.18
1662 3077 4.025401 CGTGCGACCAACAAGGCC 62.025 66.667 0.00 0.00 43.14 5.19
1673 3088 1.666700 ACTACAAAAACAAGCGTGCGA 59.333 42.857 0.00 0.00 0.00 5.10
1747 3166 3.274288 GAAAGGAGGGAGTACAATGCTG 58.726 50.000 0.00 0.00 0.00 4.41
1812 3231 6.792250 GTGTGTTTATTCACTCATTTCAGTCG 59.208 38.462 0.00 0.00 38.90 4.18
1860 3279 8.410673 AGATGTTCTAACTTTCTACTGAGTCA 57.589 34.615 0.00 0.00 0.00 3.41
1927 3346 1.311859 CTGCACTCTTGGTTGCAGAA 58.688 50.000 16.76 0.00 44.69 3.02
1928 3347 0.181114 ACTGCACTCTTGGTTGCAGA 59.819 50.000 25.93 0.00 44.69 4.26
1949 3368 4.080687 GGTGAGTGTGAGTTACTACCTCT 58.919 47.826 0.00 0.00 0.00 3.69
1950 3369 3.825014 TGGTGAGTGTGAGTTACTACCTC 59.175 47.826 0.00 0.00 0.00 3.85
1953 3372 5.449107 TCTTGGTGAGTGTGAGTTACTAC 57.551 43.478 0.00 0.00 0.00 2.73
1954 3373 5.707242 CTCTTGGTGAGTGTGAGTTACTA 57.293 43.478 0.00 0.00 37.99 1.82
1981 3400 3.117131 AGGGACCAGTTTTCCTGAACAAT 60.117 43.478 0.00 0.00 44.49 2.71
2010 3429 0.241749 CAGCAACCGACACAATGCAT 59.758 50.000 0.00 0.00 41.18 3.96
2091 3510 9.736023 CATAAGCGACTCTGCATATATATAACA 57.264 33.333 0.00 0.00 37.31 2.41
2092 3511 9.952188 TCATAAGCGACTCTGCATATATATAAC 57.048 33.333 0.00 0.00 37.31 1.89
2133 3716 2.174969 GGAACACGTGTGCGACCAA 61.175 57.895 24.16 0.00 42.00 3.67
2145 3728 2.514205 ATGCTGCAACAAAGGAACAC 57.486 45.000 6.36 0.00 0.00 3.32
2150 3733 7.483307 ACTAAACATATATGCTGCAACAAAGG 58.517 34.615 12.79 0.00 0.00 3.11
2151 3734 8.400947 AGACTAAACATATATGCTGCAACAAAG 58.599 33.333 12.79 0.00 0.00 2.77
2205 3789 7.775093 ACAATGCTAAATTGCTAATGAGGAGTA 59.225 33.333 0.00 0.00 32.55 2.59
2213 3797 9.740239 CTGATTGTACAATGCTAAATTGCTAAT 57.260 29.630 25.42 0.00 32.55 1.73
2231 3815 5.836821 AGAGATCGCAAGTACTGATTGTA 57.163 39.130 0.00 0.00 39.48 2.41
2232 3816 4.727507 AGAGATCGCAAGTACTGATTGT 57.272 40.909 0.00 0.00 39.48 2.71
2245 3829 7.582352 AGTAGTTTTGGTTAAAAAGAGATCGC 58.418 34.615 0.00 0.00 38.43 4.58
2274 3858 6.310149 ACAAGGTCAAGGAGAATTCAGAATT 58.690 36.000 8.20 8.20 0.00 2.17
2275 3859 5.885465 ACAAGGTCAAGGAGAATTCAGAAT 58.115 37.500 8.44 0.00 0.00 2.40
2276 3860 5.310409 ACAAGGTCAAGGAGAATTCAGAA 57.690 39.130 8.44 0.00 0.00 3.02
2277 3861 4.982241 ACAAGGTCAAGGAGAATTCAGA 57.018 40.909 8.44 0.00 0.00 3.27
2278 3862 7.609532 AGAATAACAAGGTCAAGGAGAATTCAG 59.390 37.037 8.44 0.00 0.00 3.02
2279 3863 7.461749 AGAATAACAAGGTCAAGGAGAATTCA 58.538 34.615 8.44 0.00 0.00 2.57
2280 3864 7.066404 GGAGAATAACAAGGTCAAGGAGAATTC 59.934 40.741 0.00 0.00 0.00 2.17
2299 3883 4.298626 ACTCTGGGTTGCTATGGAGAATA 58.701 43.478 0.00 0.00 0.00 1.75
2300 3884 3.118531 ACTCTGGGTTGCTATGGAGAAT 58.881 45.455 0.00 0.00 0.00 2.40
2301 3885 2.551270 ACTCTGGGTTGCTATGGAGAA 58.449 47.619 0.00 0.00 0.00 2.87
2303 3887 2.636830 CAACTCTGGGTTGCTATGGAG 58.363 52.381 7.58 0.00 46.89 3.86
2304 3888 2.787473 CAACTCTGGGTTGCTATGGA 57.213 50.000 7.58 0.00 46.89 3.41
2315 3901 2.551459 CTGCAGAAAGTTCCAACTCTGG 59.449 50.000 8.42 0.00 45.08 3.86
2320 3906 4.134563 TCCTTACTGCAGAAAGTTCCAAC 58.865 43.478 23.35 0.00 0.00 3.77
2323 3909 7.201741 GGAAATATCCTTACTGCAGAAAGTTCC 60.202 40.741 23.35 15.52 42.93 3.62
2397 3983 5.665812 TCCCACTATACAAGTAGAAGGCAAT 59.334 40.000 0.00 0.00 35.76 3.56
2452 4038 3.466836 TGAGTTACCTCAACAACTGCAG 58.533 45.455 13.48 13.48 44.67 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.