Multiple sequence alignment - TraesCS7B01G085300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G085300 chr7B 100.000 4499 0 0 1 4499 97305449 97309947 0.000000e+00 8309.0
1 TraesCS7B01G085300 chr7D 89.657 2272 114 50 387 2594 135393290 135395504 0.000000e+00 2782.0
2 TraesCS7B01G085300 chr7D 94.282 752 20 4 3748 4480 135398516 135399263 0.000000e+00 1129.0
3 TraesCS7B01G085300 chr7D 89.458 683 41 10 3069 3730 135396126 135396798 0.000000e+00 833.0
4 TraesCS7B01G085300 chr7D 90.893 582 35 13 2591 3165 135395555 135396125 0.000000e+00 765.0
5 TraesCS7B01G085300 chr7A 88.460 1889 110 54 761 2594 134540302 134542137 0.000000e+00 2182.0
6 TraesCS7B01G085300 chr7A 87.809 1214 88 32 2591 3769 134542187 134543375 0.000000e+00 1367.0
7 TraesCS7B01G085300 chr7A 88.235 544 47 9 3943 4480 134544018 134544550 6.350000e-178 634.0
8 TraesCS7B01G085300 chr7A 82.014 556 47 27 198 727 134539694 134540222 1.500000e-114 424.0
9 TraesCS7B01G085300 chr7A 97.619 42 0 1 4206 4246 134544225 134544266 2.250000e-08 71.3
10 TraesCS7B01G085300 chr6A 88.393 224 26 0 1434 1657 533398488 533398711 2.060000e-68 270.0
11 TraesCS7B01G085300 chr6A 85.443 158 17 6 1169 1323 533398268 533398422 4.660000e-35 159.0
12 TraesCS7B01G085300 chr6D 87.054 224 29 0 1434 1657 388116874 388117097 2.080000e-63 254.0
13 TraesCS7B01G085300 chr6D 85.890 163 17 6 1169 1328 388116621 388116780 7.740000e-38 169.0
14 TraesCS7B01G085300 chr6B 85.714 224 32 0 1434 1657 579530610 579530833 2.090000e-58 237.0
15 TraesCS7B01G085300 chr6B 85.987 157 16 6 1169 1322 579530356 579530509 3.600000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G085300 chr7B 97305449 97309947 4498 False 8309.00 8309 100.0000 1 4499 1 chr7B.!!$F1 4498
1 TraesCS7B01G085300 chr7D 135393290 135399263 5973 False 1377.25 2782 91.0725 387 4480 4 chr7D.!!$F1 4093
2 TraesCS7B01G085300 chr7A 134539694 134544550 4856 False 935.66 2182 88.8274 198 4480 5 chr7A.!!$F1 4282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.106569 CCCAGCTATCCAACATGGCA 60.107 55.0 0.00 0.00 37.47 4.92 F
186 187 0.108615 CCACTTGCCACTCGGAGTAG 60.109 60.0 10.87 4.59 0.00 2.57 F
1421 1569 0.107897 TTTGGTCTGCTGTGACGTGT 60.108 50.0 0.00 0.00 37.81 4.49 F
2468 2648 0.881796 GTTGTGCCTACCTTTGCTCC 59.118 55.0 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1551 0.107897 AACACGTCACAGCAGACCAA 60.108 50.0 0.00 0.0 35.07 3.67 R
2060 2218 0.111639 TGGCCAGGAACAAGGTAACC 59.888 55.0 0.00 0.0 37.17 2.85 R
2690 2930 0.038744 ACCAAGGCAACAGATCCAGG 59.961 55.0 0.00 0.0 41.41 4.45 R
3916 6286 0.249405 CTCTCTGCTGGCGGAAGATC 60.249 60.0 3.97 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.379174 GGCATGGACGTGTTCACT 57.621 55.556 0.00 0.00 0.00 3.41
18 19 1.868997 GGCATGGACGTGTTCACTG 59.131 57.895 0.00 0.00 0.00 3.66
19 20 1.207593 GCATGGACGTGTTCACTGC 59.792 57.895 0.00 0.70 0.00 4.40
20 21 1.506309 GCATGGACGTGTTCACTGCA 61.506 55.000 0.00 0.00 0.00 4.41
21 22 0.514255 CATGGACGTGTTCACTGCAG 59.486 55.000 13.48 13.48 0.00 4.41
22 23 1.230635 ATGGACGTGTTCACTGCAGC 61.231 55.000 15.27 0.00 0.00 5.25
23 24 1.595382 GGACGTGTTCACTGCAGCT 60.595 57.895 15.27 0.00 0.00 4.24
24 25 1.160329 GGACGTGTTCACTGCAGCTT 61.160 55.000 15.27 0.00 0.00 3.74
25 26 0.233332 GACGTGTTCACTGCAGCTTC 59.767 55.000 15.27 2.68 0.00 3.86
26 27 1.160329 ACGTGTTCACTGCAGCTTCC 61.160 55.000 15.27 0.00 0.00 3.46
27 28 1.845809 CGTGTTCACTGCAGCTTCCC 61.846 60.000 15.27 0.00 0.00 3.97
28 29 0.819259 GTGTTCACTGCAGCTTCCCA 60.819 55.000 15.27 1.32 0.00 4.37
29 30 0.535780 TGTTCACTGCAGCTTCCCAG 60.536 55.000 15.27 4.66 35.26 4.45
39 40 3.882131 GCTTCCCAGCTATCCAACA 57.118 52.632 0.00 0.00 43.51 3.33
40 41 2.355010 GCTTCCCAGCTATCCAACAT 57.645 50.000 0.00 0.00 43.51 2.71
41 42 1.952296 GCTTCCCAGCTATCCAACATG 59.048 52.381 0.00 0.00 43.51 3.21
42 43 2.579873 CTTCCCAGCTATCCAACATGG 58.420 52.381 0.00 0.00 39.43 3.66
43 44 0.183492 TCCCAGCTATCCAACATGGC 59.817 55.000 0.00 0.00 37.47 4.40
44 45 0.106569 CCCAGCTATCCAACATGGCA 60.107 55.000 0.00 0.00 37.47 4.92
45 46 1.685803 CCCAGCTATCCAACATGGCAA 60.686 52.381 0.00 0.00 37.47 4.52
46 47 1.406539 CCAGCTATCCAACATGGCAAC 59.593 52.381 0.00 0.00 37.47 4.17
47 48 1.406539 CAGCTATCCAACATGGCAACC 59.593 52.381 0.00 0.00 37.47 3.77
48 49 1.285962 AGCTATCCAACATGGCAACCT 59.714 47.619 0.00 0.00 37.47 3.50
49 50 2.509548 AGCTATCCAACATGGCAACCTA 59.490 45.455 0.00 0.00 37.47 3.08
50 51 3.053693 AGCTATCCAACATGGCAACCTAA 60.054 43.478 0.00 0.00 37.47 2.69
51 52 3.316308 GCTATCCAACATGGCAACCTAAG 59.684 47.826 0.00 0.00 37.47 2.18
52 53 2.969821 TCCAACATGGCAACCTAAGT 57.030 45.000 0.00 0.00 37.47 2.24
53 54 2.790433 TCCAACATGGCAACCTAAGTC 58.210 47.619 0.00 0.00 37.47 3.01
54 55 2.107378 TCCAACATGGCAACCTAAGTCA 59.893 45.455 0.00 0.00 37.47 3.41
55 56 2.489329 CCAACATGGCAACCTAAGTCAG 59.511 50.000 0.00 0.00 0.00 3.51
56 57 1.826385 ACATGGCAACCTAAGTCAGC 58.174 50.000 0.00 0.00 0.00 4.26
57 58 1.352352 ACATGGCAACCTAAGTCAGCT 59.648 47.619 0.00 0.00 0.00 4.24
58 59 2.224867 ACATGGCAACCTAAGTCAGCTT 60.225 45.455 0.00 0.00 38.66 3.74
59 60 2.656947 TGGCAACCTAAGTCAGCTTT 57.343 45.000 0.00 0.00 36.22 3.51
60 61 3.780804 TGGCAACCTAAGTCAGCTTTA 57.219 42.857 0.00 0.00 36.22 1.85
61 62 3.674997 TGGCAACCTAAGTCAGCTTTAG 58.325 45.455 0.00 0.00 36.22 1.85
62 63 3.010420 GGCAACCTAAGTCAGCTTTAGG 58.990 50.000 17.60 17.60 36.22 2.69
63 64 3.307480 GGCAACCTAAGTCAGCTTTAGGA 60.307 47.826 23.64 0.00 36.22 2.94
64 65 4.518249 GCAACCTAAGTCAGCTTTAGGAT 58.482 43.478 23.64 12.93 36.22 3.24
65 66 4.572795 GCAACCTAAGTCAGCTTTAGGATC 59.427 45.833 23.64 11.45 36.22 3.36
66 67 5.627968 GCAACCTAAGTCAGCTTTAGGATCT 60.628 44.000 23.64 9.22 36.22 2.75
67 68 6.407074 GCAACCTAAGTCAGCTTTAGGATCTA 60.407 42.308 23.64 0.00 36.22 1.98
68 69 6.718522 ACCTAAGTCAGCTTTAGGATCTAC 57.281 41.667 23.64 0.00 36.22 2.59
69 70 5.299782 ACCTAAGTCAGCTTTAGGATCTACG 59.700 44.000 23.64 2.31 36.22 3.51
70 71 5.299782 CCTAAGTCAGCTTTAGGATCTACGT 59.700 44.000 15.07 0.00 36.22 3.57
71 72 5.662674 AAGTCAGCTTTAGGATCTACGTT 57.337 39.130 0.00 0.00 0.00 3.99
72 73 5.662674 AGTCAGCTTTAGGATCTACGTTT 57.337 39.130 0.00 0.00 0.00 3.60
73 74 6.038997 AGTCAGCTTTAGGATCTACGTTTT 57.961 37.500 0.00 0.00 0.00 2.43
74 75 6.465084 AGTCAGCTTTAGGATCTACGTTTTT 58.535 36.000 0.00 0.00 0.00 1.94
75 76 6.590677 AGTCAGCTTTAGGATCTACGTTTTTC 59.409 38.462 0.00 0.00 0.00 2.29
76 77 6.367969 GTCAGCTTTAGGATCTACGTTTTTCA 59.632 38.462 0.00 0.00 0.00 2.69
77 78 7.064728 GTCAGCTTTAGGATCTACGTTTTTCAT 59.935 37.037 0.00 0.00 0.00 2.57
78 79 7.277981 TCAGCTTTAGGATCTACGTTTTTCATC 59.722 37.037 0.00 0.00 0.00 2.92
79 80 6.539103 AGCTTTAGGATCTACGTTTTTCATCC 59.461 38.462 0.00 0.00 34.30 3.51
80 81 6.315393 GCTTTAGGATCTACGTTTTTCATCCA 59.685 38.462 0.00 0.00 36.26 3.41
81 82 7.148306 GCTTTAGGATCTACGTTTTTCATCCAA 60.148 37.037 0.00 0.00 36.26 3.53
82 83 7.605410 TTAGGATCTACGTTTTTCATCCAAC 57.395 36.000 0.00 0.00 36.26 3.77
83 84 5.556915 AGGATCTACGTTTTTCATCCAACA 58.443 37.500 0.00 0.00 36.26 3.33
84 85 5.643777 AGGATCTACGTTTTTCATCCAACAG 59.356 40.000 0.00 0.00 36.26 3.16
85 86 5.411669 GGATCTACGTTTTTCATCCAACAGT 59.588 40.000 0.00 0.00 34.27 3.55
86 87 6.072673 GGATCTACGTTTTTCATCCAACAGTT 60.073 38.462 0.00 0.00 34.27 3.16
87 88 7.118680 GGATCTACGTTTTTCATCCAACAGTTA 59.881 37.037 0.00 0.00 34.27 2.24
88 89 7.789273 TCTACGTTTTTCATCCAACAGTTAA 57.211 32.000 0.00 0.00 0.00 2.01
89 90 7.857569 TCTACGTTTTTCATCCAACAGTTAAG 58.142 34.615 0.00 0.00 0.00 1.85
90 91 6.687081 ACGTTTTTCATCCAACAGTTAAGA 57.313 33.333 0.00 0.00 0.00 2.10
91 92 6.725246 ACGTTTTTCATCCAACAGTTAAGAG 58.275 36.000 0.00 0.00 0.00 2.85
92 93 6.142817 CGTTTTTCATCCAACAGTTAAGAGG 58.857 40.000 0.00 0.00 0.00 3.69
93 94 6.447162 GTTTTTCATCCAACAGTTAAGAGGG 58.553 40.000 0.00 0.00 0.00 4.30
94 95 3.350219 TCATCCAACAGTTAAGAGGGC 57.650 47.619 0.00 0.00 0.00 5.19
95 96 2.009774 CATCCAACAGTTAAGAGGGCG 58.990 52.381 0.00 0.00 0.00 6.13
96 97 1.053424 TCCAACAGTTAAGAGGGCGT 58.947 50.000 0.00 0.00 0.00 5.68
97 98 1.418637 TCCAACAGTTAAGAGGGCGTT 59.581 47.619 0.00 0.00 0.00 4.84
98 99 1.804748 CCAACAGTTAAGAGGGCGTTC 59.195 52.381 0.00 0.00 0.00 3.95
99 100 2.489971 CAACAGTTAAGAGGGCGTTCA 58.510 47.619 0.00 0.00 0.00 3.18
100 101 2.165319 ACAGTTAAGAGGGCGTTCAC 57.835 50.000 0.00 0.00 0.00 3.18
101 102 1.692519 ACAGTTAAGAGGGCGTTCACT 59.307 47.619 0.00 0.00 0.00 3.41
102 103 2.069273 CAGTTAAGAGGGCGTTCACTG 58.931 52.381 0.00 0.00 0.00 3.66
103 104 1.002087 AGTTAAGAGGGCGTTCACTGG 59.998 52.381 0.00 0.00 0.00 4.00
104 105 0.323629 TTAAGAGGGCGTTCACTGGG 59.676 55.000 0.00 0.00 0.00 4.45
105 106 0.543410 TAAGAGGGCGTTCACTGGGA 60.543 55.000 0.00 0.00 0.00 4.37
106 107 1.415672 AAGAGGGCGTTCACTGGGAA 61.416 55.000 0.00 0.00 0.00 3.97
107 108 1.072505 GAGGGCGTTCACTGGGAAA 59.927 57.895 0.00 0.00 37.23 3.13
108 109 0.322546 GAGGGCGTTCACTGGGAAAT 60.323 55.000 0.00 0.00 37.23 2.17
109 110 0.322546 AGGGCGTTCACTGGGAAATC 60.323 55.000 0.00 0.00 37.23 2.17
110 111 1.313091 GGGCGTTCACTGGGAAATCC 61.313 60.000 0.00 0.00 37.23 3.01
123 124 2.604139 GGAAATCCCTCCCAACAAACA 58.396 47.619 0.00 0.00 0.00 2.83
124 125 3.173151 GGAAATCCCTCCCAACAAACAT 58.827 45.455 0.00 0.00 0.00 2.71
125 126 3.582647 GGAAATCCCTCCCAACAAACATT 59.417 43.478 0.00 0.00 0.00 2.71
126 127 4.041567 GGAAATCCCTCCCAACAAACATTT 59.958 41.667 0.00 0.00 0.00 2.32
127 128 4.622260 AATCCCTCCCAACAAACATTTG 57.378 40.909 2.77 2.77 43.62 2.32
128 129 2.324541 TCCCTCCCAACAAACATTTGG 58.675 47.619 9.09 0.00 42.34 3.28
129 130 1.270785 CCCTCCCAACAAACATTTGGC 60.271 52.381 9.09 0.00 42.06 4.52
130 131 1.415659 CCTCCCAACAAACATTTGGCA 59.584 47.619 9.09 0.00 42.06 4.92
131 132 2.158842 CCTCCCAACAAACATTTGGCAA 60.159 45.455 9.09 0.00 42.06 4.52
132 133 3.496515 CCTCCCAACAAACATTTGGCAAT 60.497 43.478 0.00 0.00 42.06 3.56
133 134 4.262808 CCTCCCAACAAACATTTGGCAATA 60.263 41.667 0.00 0.00 42.06 1.90
134 135 4.892433 TCCCAACAAACATTTGGCAATAG 58.108 39.130 0.00 0.00 42.06 1.73
135 136 4.346418 TCCCAACAAACATTTGGCAATAGT 59.654 37.500 0.00 0.00 42.06 2.12
136 137 5.062528 CCCAACAAACATTTGGCAATAGTT 58.937 37.500 0.00 6.37 42.06 2.24
137 138 5.530543 CCCAACAAACATTTGGCAATAGTTT 59.469 36.000 18.85 18.85 42.06 2.66
138 139 6.039159 CCCAACAAACATTTGGCAATAGTTTT 59.961 34.615 20.84 13.18 42.06 2.43
139 140 7.416101 CCCAACAAACATTTGGCAATAGTTTTT 60.416 33.333 20.84 15.19 42.06 1.94
140 141 7.643371 CCAACAAACATTTGGCAATAGTTTTTC 59.357 33.333 20.84 0.00 42.34 2.29
141 142 7.258022 ACAAACATTTGGCAATAGTTTTTCC 57.742 32.000 20.84 0.00 42.34 3.13
142 143 6.262049 ACAAACATTTGGCAATAGTTTTTCCC 59.738 34.615 20.84 0.00 42.34 3.97
143 144 5.823861 ACATTTGGCAATAGTTTTTCCCT 57.176 34.783 0.00 0.00 0.00 4.20
144 145 6.186420 ACATTTGGCAATAGTTTTTCCCTT 57.814 33.333 0.00 0.00 0.00 3.95
145 146 5.997129 ACATTTGGCAATAGTTTTTCCCTTG 59.003 36.000 0.00 0.00 0.00 3.61
146 147 5.622346 TTTGGCAATAGTTTTTCCCTTGT 57.378 34.783 0.00 0.00 0.00 3.16
147 148 5.622346 TTGGCAATAGTTTTTCCCTTGTT 57.378 34.783 0.00 0.00 0.00 2.83
148 149 5.622346 TGGCAATAGTTTTTCCCTTGTTT 57.378 34.783 0.00 0.00 0.00 2.83
149 150 5.995446 TGGCAATAGTTTTTCCCTTGTTTT 58.005 33.333 0.00 0.00 0.00 2.43
150 151 6.418946 TGGCAATAGTTTTTCCCTTGTTTTT 58.581 32.000 0.00 0.00 0.00 1.94
170 171 3.828875 TTTTTGTTGAATCACCCCCAC 57.171 42.857 0.00 0.00 0.00 4.61
171 172 2.765689 TTTGTTGAATCACCCCCACT 57.234 45.000 0.00 0.00 0.00 4.00
172 173 2.765689 TTGTTGAATCACCCCCACTT 57.234 45.000 0.00 0.00 0.00 3.16
173 174 1.993956 TGTTGAATCACCCCCACTTG 58.006 50.000 0.00 0.00 0.00 3.16
174 175 0.603065 GTTGAATCACCCCCACTTGC 59.397 55.000 0.00 0.00 0.00 4.01
175 176 0.541764 TTGAATCACCCCCACTTGCC 60.542 55.000 0.00 0.00 0.00 4.52
176 177 1.076549 GAATCACCCCCACTTGCCA 59.923 57.895 0.00 0.00 0.00 4.92
177 178 1.228862 AATCACCCCCACTTGCCAC 60.229 57.895 0.00 0.00 0.00 5.01
178 179 1.729267 AATCACCCCCACTTGCCACT 61.729 55.000 0.00 0.00 0.00 4.00
179 180 2.142292 ATCACCCCCACTTGCCACTC 62.142 60.000 0.00 0.00 0.00 3.51
180 181 3.953775 ACCCCCACTTGCCACTCG 61.954 66.667 0.00 0.00 0.00 4.18
181 182 4.722700 CCCCCACTTGCCACTCGG 62.723 72.222 0.00 0.00 0.00 4.63
182 183 3.636231 CCCCACTTGCCACTCGGA 61.636 66.667 0.00 0.00 0.00 4.55
183 184 2.046892 CCCACTTGCCACTCGGAG 60.047 66.667 2.83 2.83 0.00 4.63
184 185 2.743718 CCACTTGCCACTCGGAGT 59.256 61.111 4.45 4.45 0.00 3.85
185 186 1.541310 CCCACTTGCCACTCGGAGTA 61.541 60.000 10.87 0.00 0.00 2.59
186 187 0.108615 CCACTTGCCACTCGGAGTAG 60.109 60.000 10.87 4.59 0.00 2.57
187 188 0.737715 CACTTGCCACTCGGAGTAGC 60.738 60.000 19.60 19.60 33.39 3.58
188 189 1.153549 CTTGCCACTCGGAGTAGCC 60.154 63.158 22.62 9.76 31.72 3.93
189 190 1.608717 CTTGCCACTCGGAGTAGCCT 61.609 60.000 22.62 0.00 31.72 4.58
190 191 1.192146 TTGCCACTCGGAGTAGCCTT 61.192 55.000 22.62 0.00 31.72 4.35
191 192 1.192146 TGCCACTCGGAGTAGCCTTT 61.192 55.000 22.62 0.00 31.72 3.11
192 193 0.822164 GCCACTCGGAGTAGCCTTTA 59.178 55.000 16.32 0.00 26.14 1.85
193 194 1.202428 GCCACTCGGAGTAGCCTTTAG 60.202 57.143 16.32 0.00 26.14 1.85
194 195 1.202428 CCACTCGGAGTAGCCTTTAGC 60.202 57.143 10.87 0.00 44.25 3.09
195 196 1.112950 ACTCGGAGTAGCCTTTAGCC 58.887 55.000 9.33 0.00 45.47 3.93
196 197 0.389757 CTCGGAGTAGCCTTTAGCCC 59.610 60.000 0.00 0.00 45.47 5.19
199 200 1.497161 GGAGTAGCCTTTAGCCCAGA 58.503 55.000 0.00 0.00 45.47 3.86
234 235 4.394712 CTTCCCAGCGAACGGGCT 62.395 66.667 0.00 0.00 44.11 5.19
261 272 2.853003 GTCCGACGAGATGCTTTAAGAC 59.147 50.000 0.00 0.00 0.00 3.01
266 277 3.929610 GACGAGATGCTTTAAGACTTGCT 59.070 43.478 0.00 0.00 0.00 3.91
271 282 6.396829 AGATGCTTTAAGACTTGCTGTTTT 57.603 33.333 0.00 0.00 0.00 2.43
279 290 4.574599 AGACTTGCTGTTTTCATCCAAC 57.425 40.909 0.00 0.00 0.00 3.77
288 299 5.682943 TGTTTTCATCCAACGGTTAAGAG 57.317 39.130 0.00 0.00 0.00 2.85
294 305 0.604511 CCAACGGTTAAGAGGGCGTT 60.605 55.000 0.00 0.00 0.00 4.84
297 308 0.393820 ACGGTTAAGAGGGCGTTCAA 59.606 50.000 0.00 0.00 0.00 2.69
298 309 0.794473 CGGTTAAGAGGGCGTTCAAC 59.206 55.000 0.00 0.00 0.00 3.18
308 319 2.250190 CGTTCAACGCGAAACCCC 59.750 61.111 15.93 0.00 34.69 4.95
311 322 1.598685 TTCAACGCGAAACCCCTCC 60.599 57.895 15.93 0.00 0.00 4.30
320 331 2.366153 GAAACCCCTCCCAGCCAACA 62.366 60.000 0.00 0.00 0.00 3.33
324 335 1.383799 CCCTCCCAGCCAACATTCA 59.616 57.895 0.00 0.00 0.00 2.57
330 341 1.270252 CCCAGCCAACATTCACCAAAC 60.270 52.381 0.00 0.00 0.00 2.93
332 343 2.158986 CCAGCCAACATTCACCAAACAA 60.159 45.455 0.00 0.00 0.00 2.83
335 346 3.134442 AGCCAACATTCACCAAACAACAT 59.866 39.130 0.00 0.00 0.00 2.71
338 349 5.358922 CCAACATTCACCAAACAACATTCT 58.641 37.500 0.00 0.00 0.00 2.40
339 350 5.816777 CCAACATTCACCAAACAACATTCTT 59.183 36.000 0.00 0.00 0.00 2.52
345 356 6.279513 TCACCAAACAACATTCTTCTTGTT 57.720 33.333 0.00 0.00 41.36 2.83
347 358 7.158021 TCACCAAACAACATTCTTCTTGTTTT 58.842 30.769 5.90 0.00 44.46 2.43
348 359 7.330700 TCACCAAACAACATTCTTCTTGTTTTC 59.669 33.333 5.90 0.00 44.46 2.29
373 384 3.052082 CTGCCACTTGCCACTCGG 61.052 66.667 0.00 0.00 40.16 4.63
374 385 4.641645 TGCCACTTGCCACTCGGG 62.642 66.667 0.00 0.00 40.16 5.14
500 520 0.445436 CTCAATCCAAGCGAGTGCAC 59.555 55.000 9.40 9.40 46.23 4.57
504 524 1.830587 ATCCAAGCGAGTGCACTCCA 61.831 55.000 35.07 16.11 46.23 3.86
519 539 4.112634 GCACTCCAAAAAGTCCAAAAGAC 58.887 43.478 0.00 0.00 46.71 3.01
567 587 1.062685 CCTCAGACCATCGACGACG 59.937 63.158 0.00 0.00 41.26 5.12
568 588 1.583967 CTCAGACCATCGACGACGC 60.584 63.158 0.00 0.00 39.58 5.19
571 591 2.879462 GACCATCGACGACGCACC 60.879 66.667 0.00 0.00 39.58 5.01
572 592 4.430765 ACCATCGACGACGCACCC 62.431 66.667 0.00 0.00 39.58 4.61
612 645 2.276540 CGAGCTGTCGTCTTTATTCACG 59.723 50.000 0.00 0.00 41.57 4.35
679 712 7.151999 TCACGCTAAAATTACACATTTCCAT 57.848 32.000 0.00 0.00 0.00 3.41
681 714 8.085296 TCACGCTAAAATTACACATTTCCATTT 58.915 29.630 0.00 0.00 0.00 2.32
694 727 9.328845 ACACATTTCCATTTATTAATCATTGGC 57.671 29.630 5.91 0.00 0.00 4.52
696 729 7.938490 ACATTTCCATTTATTAATCATTGGCCC 59.062 33.333 0.00 0.00 0.00 5.80
697 730 5.720371 TCCATTTATTAATCATTGGCCCG 57.280 39.130 0.00 0.00 0.00 6.13
699 732 5.242838 TCCATTTATTAATCATTGGCCCGTC 59.757 40.000 0.00 0.00 0.00 4.79
700 733 5.243730 CCATTTATTAATCATTGGCCCGTCT 59.756 40.000 0.00 0.00 0.00 4.18
701 734 6.381801 CATTTATTAATCATTGGCCCGTCTC 58.618 40.000 0.00 0.00 0.00 3.36
702 735 3.864789 ATTAATCATTGGCCCGTCTCT 57.135 42.857 0.00 0.00 0.00 3.10
703 736 2.620251 TAATCATTGGCCCGTCTCTG 57.380 50.000 0.00 0.00 0.00 3.35
728 827 3.102276 CAGACTTAGCGCTTAAGACTCG 58.898 50.000 18.68 12.51 40.71 4.18
729 828 3.008330 AGACTTAGCGCTTAAGACTCGA 58.992 45.455 18.68 0.00 39.21 4.04
748 847 2.611518 GAGAGATGTTTCCAGGACACG 58.388 52.381 1.16 0.00 0.00 4.49
750 849 0.321653 AGATGTTTCCAGGACACGGC 60.322 55.000 1.16 0.00 0.00 5.68
839 941 3.297134 ACCCCACTAATTACATGGCAG 57.703 47.619 0.00 3.05 31.66 4.85
935 1045 1.775039 CGCGCAATCCATTCGTCCAT 61.775 55.000 8.75 0.00 0.00 3.41
961 1071 1.454111 CCGGTCTCGAGATCCCACT 60.454 63.158 19.90 0.00 39.00 4.00
964 1074 0.747852 GGTCTCGAGATCCCACTTCC 59.252 60.000 19.90 8.57 0.00 3.46
968 1078 0.252057 TCGAGATCCCACTTCCCACA 60.252 55.000 0.00 0.00 0.00 4.17
969 1079 0.833287 CGAGATCCCACTTCCCACAT 59.167 55.000 0.00 0.00 0.00 3.21
970 1080 1.202580 CGAGATCCCACTTCCCACATC 60.203 57.143 0.00 0.00 0.00 3.06
973 1083 1.274703 ATCCCACTTCCCACATCGCT 61.275 55.000 0.00 0.00 0.00 4.93
1112 1236 4.483243 CCCCCGTCGTCCCCAATG 62.483 72.222 0.00 0.00 0.00 2.82
1115 1239 1.302993 CCCGTCGTCCCCAATGTTT 60.303 57.895 0.00 0.00 0.00 2.83
1324 1462 0.179119 CCGGCGACTTCGAGGTAATT 60.179 55.000 9.30 0.00 43.02 1.40
1326 1464 2.480073 CCGGCGACTTCGAGGTAATTAA 60.480 50.000 9.30 0.00 43.02 1.40
1327 1465 2.533129 CGGCGACTTCGAGGTAATTAAC 59.467 50.000 0.00 0.00 43.02 2.01
1356 1494 0.179018 GACCAGCACAACCTCACCTT 60.179 55.000 0.00 0.00 0.00 3.50
1362 1500 1.005394 ACAACCTCACCTTACGCGG 60.005 57.895 12.47 0.00 0.00 6.46
1397 1545 1.326328 CAGATCTCTGGCTGATCGGA 58.674 55.000 5.48 0.00 43.52 4.55
1403 1551 0.320374 TCTGGCTGATCGGACGTTTT 59.680 50.000 5.48 0.00 0.00 2.43
1414 1562 1.021968 GGACGTTTTTGGTCTGCTGT 58.978 50.000 0.00 0.00 34.82 4.40
1417 1565 1.400494 ACGTTTTTGGTCTGCTGTGAC 59.600 47.619 0.00 0.00 36.31 3.67
1421 1569 0.107897 TTTGGTCTGCTGTGACGTGT 60.108 50.000 0.00 0.00 37.81 4.49
1591 1739 2.269241 GTCAGGCAGGCCTACCAC 59.731 66.667 24.60 10.72 46.28 4.16
1633 1781 4.148825 GAGGACGTCGCTGCCCAT 62.149 66.667 9.92 0.00 0.00 4.00
1634 1782 2.758327 AGGACGTCGCTGCCCATA 60.758 61.111 9.92 0.00 0.00 2.74
1687 1835 2.108970 GTCCCGTTCCTATCTTCCTGT 58.891 52.381 0.00 0.00 0.00 4.00
1702 1850 7.962995 ATCTTCCTGTACATTCAGTCTTAGA 57.037 36.000 0.00 0.00 34.02 2.10
1703 1851 7.962995 TCTTCCTGTACATTCAGTCTTAGAT 57.037 36.000 0.00 0.00 34.02 1.98
1705 1853 5.907207 TCCTGTACATTCAGTCTTAGATGC 58.093 41.667 0.00 0.00 34.02 3.91
1706 1854 5.053145 CCTGTACATTCAGTCTTAGATGCC 58.947 45.833 0.00 0.00 34.02 4.40
1707 1855 5.395657 CCTGTACATTCAGTCTTAGATGCCA 60.396 44.000 0.00 0.00 34.02 4.92
1708 1856 6.239217 TGTACATTCAGTCTTAGATGCCAT 57.761 37.500 0.00 0.00 0.00 4.40
1728 1879 5.535406 GCCATATACTCTGCTATATACCGGT 59.465 44.000 13.98 13.98 0.00 5.28
1750 1901 2.673368 GCGTCCCTAAATTGACTGACTG 59.327 50.000 0.00 0.00 0.00 3.51
1779 1931 6.837471 AATTACCCGGTGCTAAACAAATTA 57.163 33.333 0.00 0.00 0.00 1.40
1785 1937 4.399978 CGGTGCTAAACAAATTAGTTCGG 58.600 43.478 0.00 0.00 42.58 4.30
1812 1964 5.712004 TGTGCTGTCATTTACAATGGATTG 58.288 37.500 0.00 0.00 43.26 2.67
1814 1966 4.160065 TGCTGTCATTTACAATGGATTGGG 59.840 41.667 4.45 0.00 41.96 4.12
1832 1988 1.266989 GGGTCTGCACTGTGCTAAAAC 59.733 52.381 30.43 21.33 45.31 2.43
1878 2034 8.917088 CCAAATATCCACTGGTATGAAAGAAAT 58.083 33.333 0.00 0.00 0.00 2.17
1879 2035 9.956720 CAAATATCCACTGGTATGAAAGAAATC 57.043 33.333 0.00 0.00 0.00 2.17
1921 2078 6.325919 GAAGACTCTGTTCTTCTCTTCTGA 57.674 41.667 11.89 0.00 45.57 3.27
1926 2083 8.210265 AGACTCTGTTCTTCTCTTCTGAAAAAT 58.790 33.333 0.00 0.00 0.00 1.82
1962 2119 8.450964 GTGCTTCTTCTATTTTACATGCTGTTA 58.549 33.333 0.00 0.00 0.00 2.41
2060 2218 1.872952 TCAGTTGCGATGGTGACTTTG 59.127 47.619 0.00 0.00 0.00 2.77
2109 2267 5.130145 TGATTTTGGAGGTGGAAATTTGTGT 59.870 36.000 0.00 0.00 0.00 3.72
2156 2314 4.159506 TGGGGCCTGAATTTTCTTTATTCG 59.840 41.667 0.84 0.00 35.29 3.34
2363 2541 1.094785 CATTTGGTCACCCGATCACC 58.905 55.000 0.00 0.00 29.79 4.02
2372 2550 1.077501 CCCGATCACCAAGGTGCAT 60.078 57.895 14.35 8.77 45.04 3.96
2458 2638 8.800370 TCATTATGTTCTATTTGTTGTGCCTA 57.200 30.769 0.00 0.00 0.00 3.93
2459 2639 8.673711 TCATTATGTTCTATTTGTTGTGCCTAC 58.326 33.333 0.00 0.00 0.00 3.18
2460 2640 5.897377 ATGTTCTATTTGTTGTGCCTACC 57.103 39.130 0.00 0.00 0.00 3.18
2461 2641 4.980573 TGTTCTATTTGTTGTGCCTACCT 58.019 39.130 0.00 0.00 0.00 3.08
2468 2648 0.881796 GTTGTGCCTACCTTTGCTCC 59.118 55.000 0.00 0.00 0.00 4.70
2471 2651 1.003839 TGCCTACCTTTGCTCCGTG 60.004 57.895 0.00 0.00 0.00 4.94
2480 2660 2.164219 CCTTTGCTCCGTGTTGCATTAT 59.836 45.455 0.00 0.00 39.07 1.28
2481 2661 3.376859 CCTTTGCTCCGTGTTGCATTATA 59.623 43.478 0.00 0.00 39.07 0.98
2482 2662 4.342772 CTTTGCTCCGTGTTGCATTATAC 58.657 43.478 0.00 0.00 39.07 1.47
2483 2663 3.260475 TGCTCCGTGTTGCATTATACT 57.740 42.857 0.00 0.00 33.94 2.12
2485 2665 4.116961 TGCTCCGTGTTGCATTATACTAC 58.883 43.478 0.00 0.00 33.94 2.73
2486 2666 4.116961 GCTCCGTGTTGCATTATACTACA 58.883 43.478 0.00 0.00 0.00 2.74
2487 2667 4.209288 GCTCCGTGTTGCATTATACTACAG 59.791 45.833 0.00 0.00 0.00 2.74
2488 2668 5.333299 TCCGTGTTGCATTATACTACAGT 57.667 39.130 0.00 0.00 0.00 3.55
2489 2669 5.726397 TCCGTGTTGCATTATACTACAGTT 58.274 37.500 0.00 0.00 0.00 3.16
2490 2670 6.865411 TCCGTGTTGCATTATACTACAGTTA 58.135 36.000 0.00 0.00 0.00 2.24
2491 2671 7.321908 TCCGTGTTGCATTATACTACAGTTAA 58.678 34.615 0.00 0.00 0.00 2.01
2492 2672 7.818446 TCCGTGTTGCATTATACTACAGTTAAA 59.182 33.333 0.00 0.00 0.00 1.52
2493 2673 8.444715 CCGTGTTGCATTATACTACAGTTAAAA 58.555 33.333 0.00 0.00 0.00 1.52
2494 2674 9.472995 CGTGTTGCATTATACTACAGTTAAAAG 57.527 33.333 0.00 0.00 0.00 2.27
2495 2675 9.274065 GTGTTGCATTATACTACAGTTAAAAGC 57.726 33.333 0.00 0.00 0.00 3.51
2496 2676 8.455682 TGTTGCATTATACTACAGTTAAAAGCC 58.544 33.333 0.00 0.00 0.00 4.35
2497 2677 7.241663 TGCATTATACTACAGTTAAAAGCCG 57.758 36.000 0.00 0.00 0.00 5.52
2498 2678 7.042950 TGCATTATACTACAGTTAAAAGCCGA 58.957 34.615 0.00 0.00 0.00 5.54
2499 2679 7.549842 TGCATTATACTACAGTTAAAAGCCGAA 59.450 33.333 0.00 0.00 0.00 4.30
2500 2680 8.392612 GCATTATACTACAGTTAAAAGCCGAAA 58.607 33.333 0.00 0.00 0.00 3.46
2521 2701 9.681692 CCGAAATTCAATAATTAAGATGCATCA 57.318 29.630 27.81 8.60 34.12 3.07
2606 2846 1.762957 GTAATGCTCTGCCTGGTAGGA 59.237 52.381 12.05 0.96 37.67 2.94
2649 2889 6.410942 AGCTCAACTTTATTCTGCCTTTTT 57.589 33.333 0.00 0.00 0.00 1.94
2759 3002 9.638239 TTGTTAAATTTGAATGCATTCCTAGTC 57.362 29.630 31.35 11.47 35.97 2.59
2773 3021 6.704050 GCATTCCTAGTCATTCTAAGAGTTCC 59.296 42.308 0.00 0.00 0.00 3.62
2851 3099 3.261643 AGATGTATGTGTGGCTCTGAACA 59.738 43.478 0.00 0.00 0.00 3.18
2928 3177 8.247666 AGAACTTAATAGTATTCGCCTACCTT 57.752 34.615 0.00 0.00 33.17 3.50
3037 3286 6.827641 TCTAAAGTCGGTTCGAATCAATTTG 58.172 36.000 9.48 0.00 37.72 2.32
3086 3339 4.876107 TCCTCAGTTTTGTTCTCACAGTTC 59.124 41.667 0.00 0.00 33.22 3.01
3144 3491 3.367703 GGGACAATCTTGCTTGACCAATG 60.368 47.826 7.11 0.00 41.04 2.82
3147 3494 3.250744 CAATCTTGCTTGACCAATGCAG 58.749 45.455 0.00 0.00 38.01 4.41
3151 3498 0.961019 TGCTTGACCAATGCAGTTCC 59.039 50.000 0.00 0.00 32.55 3.62
3166 3513 6.959639 TGCAGTTCCTTCTAGATTTGTTTT 57.040 33.333 0.00 0.00 0.00 2.43
3213 3563 6.597280 ACAATCTCTGCTTTTTACAGGATCTC 59.403 38.462 0.00 0.00 35.78 2.75
3237 3587 1.272147 GCTGACCCCAAGGATGAGTTT 60.272 52.381 0.00 0.00 36.73 2.66
3243 3593 3.140144 ACCCCAAGGATGAGTTTCTCAAA 59.860 43.478 3.58 0.00 39.33 2.69
3369 3719 2.125269 GTCATAACCACCCGCGCT 60.125 61.111 5.56 0.00 0.00 5.92
3402 3752 3.118629 TGAAGCTGATCAAAGAGGCGTAT 60.119 43.478 0.00 0.00 0.00 3.06
3411 3761 4.017126 TCAAAGAGGCGTATCAGAAGAGA 58.983 43.478 0.00 0.00 0.00 3.10
3477 3827 1.001815 GACTACGAGAGCATGCTCCTC 60.002 57.143 37.79 30.51 43.70 3.71
3527 3883 1.489230 CCTGTATCCACCCCCTGTTAC 59.511 57.143 0.00 0.00 0.00 2.50
3543 3901 6.221659 CCCTGTTACCCTTTTATATCTCGAC 58.778 44.000 0.00 0.00 0.00 4.20
3558 3918 0.826062 TCGACCGGAGAATAAACCCC 59.174 55.000 9.46 0.00 0.00 4.95
3580 3955 3.808728 TGGTATGCAAGGTTAGATCTGC 58.191 45.455 5.18 0.00 0.00 4.26
3607 3982 6.676456 GCACCTTGCATAACAGTGAGAATAAG 60.676 42.308 0.00 0.00 44.26 1.73
3608 3983 5.882557 ACCTTGCATAACAGTGAGAATAAGG 59.117 40.000 0.00 6.25 37.54 2.69
3610 3985 7.047891 CCTTGCATAACAGTGAGAATAAGGTA 58.952 38.462 0.00 0.00 0.00 3.08
3611 3986 7.225538 CCTTGCATAACAGTGAGAATAAGGTAG 59.774 40.741 0.00 0.00 0.00 3.18
3612 3987 7.418337 TGCATAACAGTGAGAATAAGGTAGA 57.582 36.000 0.00 0.00 0.00 2.59
3613 3988 7.492524 TGCATAACAGTGAGAATAAGGTAGAG 58.507 38.462 0.00 0.00 0.00 2.43
3620 3995 8.719596 ACAGTGAGAATAAGGTAGAGAGAGATA 58.280 37.037 0.00 0.00 0.00 1.98
3639 4014 7.089538 AGAGATATGCTTTACGATGAGTCATG 58.910 38.462 11.20 5.73 0.00 3.07
3640 4015 5.636965 AGATATGCTTTACGATGAGTCATGC 59.363 40.000 11.20 7.13 0.00 4.06
3652 4028 3.609853 TGAGTCATGCATGGTACCTTTC 58.390 45.455 25.97 11.85 0.00 2.62
3666 4042 6.624423 TGGTACCTTTCGTACTTAGATGTTC 58.376 40.000 14.36 0.00 45.76 3.18
3683 4059 0.940833 TTCGCGTGTGAAATGCAGAA 59.059 45.000 5.77 0.00 41.23 3.02
3724 4102 8.515414 GTGTTTTCTGTAAGCCTGAAAATCTAT 58.485 33.333 9.35 0.00 46.20 1.98
3730 4108 7.550551 TCTGTAAGCCTGAAAATCTATCTTGTG 59.449 37.037 0.00 0.00 0.00 3.33
3732 4110 6.749923 AAGCCTGAAAATCTATCTTGTGTC 57.250 37.500 0.00 0.00 0.00 3.67
3734 4112 5.879223 AGCCTGAAAATCTATCTTGTGTCTG 59.121 40.000 0.00 0.00 0.00 3.51
3736 4114 6.818644 GCCTGAAAATCTATCTTGTGTCTGTA 59.181 38.462 0.00 0.00 0.00 2.74
3737 4115 7.334421 GCCTGAAAATCTATCTTGTGTCTGTAA 59.666 37.037 0.00 0.00 0.00 2.41
3744 4123 8.809468 ATCTATCTTGTGTCTGTAACTCTGTA 57.191 34.615 0.00 0.00 0.00 2.74
3824 6189 0.888619 TGTGCGAGTCTTCCGATTCT 59.111 50.000 0.00 0.00 0.00 2.40
3826 6191 0.458543 TGCGAGTCTTCCGATTCTGC 60.459 55.000 0.00 0.00 0.00 4.26
3888 6253 2.672714 TCACGACTTGGATTCTTCACG 58.327 47.619 0.00 0.00 0.00 4.35
3916 6286 3.548415 GCTCCGTCACCTCTTATAAGTCG 60.548 52.174 12.19 6.25 0.00 4.18
3921 6291 5.008811 CCGTCACCTCTTATAAGTCGATCTT 59.991 44.000 12.19 0.00 39.89 2.40
3924 6294 5.238868 TCACCTCTTATAAGTCGATCTTCCG 59.761 44.000 12.19 0.00 37.56 4.30
3936 6306 2.308968 ATCTTCCGCCAGCAGAGAGC 62.309 60.000 0.00 0.00 46.19 4.09
3994 6547 5.504665 GCCATCGACCACAGATTAGATTTTG 60.505 44.000 0.00 0.00 0.00 2.44
4307 6879 0.737715 GCACCGACATCTTCTTCGCT 60.738 55.000 0.00 0.00 33.78 4.93
4481 7053 4.181010 CCCTGCCATCCCGAGGTG 62.181 72.222 0.00 0.00 0.00 4.00
4482 7054 3.402681 CCTGCCATCCCGAGGTGT 61.403 66.667 0.00 0.00 0.00 4.16
4483 7055 2.187946 CTGCCATCCCGAGGTGTC 59.812 66.667 0.00 0.00 0.00 3.67
4484 7056 3.723235 CTGCCATCCCGAGGTGTCG 62.723 68.421 0.00 0.00 46.39 4.35
4485 7057 3.771160 GCCATCCCGAGGTGTCGT 61.771 66.667 0.00 0.00 45.30 4.34
4486 7058 2.184322 CCATCCCGAGGTGTCGTG 59.816 66.667 0.00 0.00 45.30 4.35
4487 7059 2.184322 CATCCCGAGGTGTCGTGG 59.816 66.667 0.00 0.00 45.30 4.94
4488 7060 2.283676 ATCCCGAGGTGTCGTGGT 60.284 61.111 0.00 0.00 45.30 4.16
4489 7061 1.911766 ATCCCGAGGTGTCGTGGTT 60.912 57.895 0.00 0.00 45.30 3.67
4490 7062 1.885163 ATCCCGAGGTGTCGTGGTTC 61.885 60.000 0.00 0.00 45.30 3.62
4491 7063 2.571216 CCCGAGGTGTCGTGGTTCT 61.571 63.158 0.00 0.00 45.30 3.01
4492 7064 1.246056 CCCGAGGTGTCGTGGTTCTA 61.246 60.000 0.00 0.00 45.30 2.10
4493 7065 0.599558 CCGAGGTGTCGTGGTTCTAA 59.400 55.000 0.00 0.00 45.30 2.10
4494 7066 1.402456 CCGAGGTGTCGTGGTTCTAAG 60.402 57.143 0.00 0.00 45.30 2.18
4495 7067 1.711206 GAGGTGTCGTGGTTCTAAGC 58.289 55.000 0.00 0.00 0.00 3.09
4496 7068 0.320697 AGGTGTCGTGGTTCTAAGCC 59.679 55.000 0.00 0.00 0.00 4.35
4497 7069 0.320697 GGTGTCGTGGTTCTAAGCCT 59.679 55.000 0.00 0.00 0.00 4.58
4498 7070 1.429463 GTGTCGTGGTTCTAAGCCTG 58.571 55.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.207593 GCAGTGAACACGTCCATGC 59.792 57.895 0.00 0.58 36.20 4.06
3 4 1.230635 GCTGCAGTGAACACGTCCAT 61.231 55.000 16.64 0.00 36.20 3.41
5 6 1.160329 AAGCTGCAGTGAACACGTCC 61.160 55.000 16.64 0.00 36.20 4.79
6 7 0.233332 GAAGCTGCAGTGAACACGTC 59.767 55.000 16.64 1.24 36.20 4.34
7 8 1.160329 GGAAGCTGCAGTGAACACGT 61.160 55.000 16.64 0.00 36.20 4.49
9 10 0.819259 TGGGAAGCTGCAGTGAACAC 60.819 55.000 16.64 6.61 0.00 3.32
10 11 0.535780 CTGGGAAGCTGCAGTGAACA 60.536 55.000 16.64 7.72 0.00 3.18
11 12 1.860484 GCTGGGAAGCTGCAGTGAAC 61.860 60.000 16.64 3.85 0.00 3.18
12 13 1.601759 GCTGGGAAGCTGCAGTGAA 60.602 57.895 16.64 0.00 0.00 3.18
13 14 1.194121 TAGCTGGGAAGCTGCAGTGA 61.194 55.000 16.64 0.00 45.81 3.41
14 15 0.107312 ATAGCTGGGAAGCTGCAGTG 60.107 55.000 16.64 0.00 45.81 3.66
15 16 0.179936 GATAGCTGGGAAGCTGCAGT 59.820 55.000 16.64 0.00 45.81 4.40
16 17 0.534652 GGATAGCTGGGAAGCTGCAG 60.535 60.000 10.11 10.11 45.81 4.41
17 18 1.273986 TGGATAGCTGGGAAGCTGCA 61.274 55.000 10.43 0.00 45.81 4.41
18 19 0.107017 TTGGATAGCTGGGAAGCTGC 60.107 55.000 10.43 0.00 45.81 5.25
19 20 1.065199 TGTTGGATAGCTGGGAAGCTG 60.065 52.381 10.43 0.00 45.81 4.24
20 21 5.589544 CCATGTTGGATAGCTGGGAAGCT 62.590 52.174 5.45 5.45 43.80 3.74
21 22 1.952296 CATGTTGGATAGCTGGGAAGC 59.048 52.381 0.00 0.00 0.00 3.86
22 23 2.579873 CCATGTTGGATAGCTGGGAAG 58.420 52.381 0.00 0.00 40.96 3.46
23 24 1.410083 GCCATGTTGGATAGCTGGGAA 60.410 52.381 0.00 0.00 40.96 3.97
24 25 0.183492 GCCATGTTGGATAGCTGGGA 59.817 55.000 0.00 0.00 40.96 4.37
25 26 0.106569 TGCCATGTTGGATAGCTGGG 60.107 55.000 0.00 0.00 40.96 4.45
26 27 1.406539 GTTGCCATGTTGGATAGCTGG 59.593 52.381 0.00 0.00 40.96 4.85
27 28 1.406539 GGTTGCCATGTTGGATAGCTG 59.593 52.381 0.00 0.00 40.96 4.24
28 29 1.285962 AGGTTGCCATGTTGGATAGCT 59.714 47.619 0.00 0.00 40.96 3.32
29 30 1.767759 AGGTTGCCATGTTGGATAGC 58.232 50.000 0.00 0.00 40.96 2.97
30 31 4.526970 ACTTAGGTTGCCATGTTGGATAG 58.473 43.478 0.00 0.00 40.96 2.08
31 32 4.018870 TGACTTAGGTTGCCATGTTGGATA 60.019 41.667 0.00 0.00 40.96 2.59
32 33 3.245229 TGACTTAGGTTGCCATGTTGGAT 60.245 43.478 0.00 0.00 40.96 3.41
33 34 2.107378 TGACTTAGGTTGCCATGTTGGA 59.893 45.455 0.00 0.00 40.96 3.53
34 35 2.489329 CTGACTTAGGTTGCCATGTTGG 59.511 50.000 0.00 0.00 41.55 3.77
35 36 2.095059 GCTGACTTAGGTTGCCATGTTG 60.095 50.000 0.00 0.00 0.00 3.33
36 37 2.162681 GCTGACTTAGGTTGCCATGTT 58.837 47.619 0.00 0.00 0.00 2.71
37 38 1.352352 AGCTGACTTAGGTTGCCATGT 59.648 47.619 0.00 0.00 31.87 3.21
38 39 2.119801 AGCTGACTTAGGTTGCCATG 57.880 50.000 0.00 0.00 31.87 3.66
39 40 2.887151 AAGCTGACTTAGGTTGCCAT 57.113 45.000 0.00 0.00 44.95 4.40
40 41 2.656947 AAAGCTGACTTAGGTTGCCA 57.343 45.000 0.00 0.00 45.88 4.92
41 42 3.010420 CCTAAAGCTGACTTAGGTTGCC 58.990 50.000 12.76 0.00 45.88 4.52
42 43 3.939066 TCCTAAAGCTGACTTAGGTTGC 58.061 45.455 18.18 0.00 45.88 4.17
43 44 5.983540 AGATCCTAAAGCTGACTTAGGTTG 58.016 41.667 18.18 0.00 45.88 3.77
45 46 5.299782 CGTAGATCCTAAAGCTGACTTAGGT 59.700 44.000 18.18 9.04 39.21 3.08
46 47 5.299782 ACGTAGATCCTAAAGCTGACTTAGG 59.700 44.000 14.28 14.28 34.05 2.69
47 48 6.380095 ACGTAGATCCTAAAGCTGACTTAG 57.620 41.667 0.00 0.00 34.05 2.18
48 49 6.770746 AACGTAGATCCTAAAGCTGACTTA 57.229 37.500 0.00 0.00 34.05 2.24
49 50 5.662674 AACGTAGATCCTAAAGCTGACTT 57.337 39.130 0.00 0.00 37.90 3.01
50 51 5.662674 AAACGTAGATCCTAAAGCTGACT 57.337 39.130 0.00 0.00 0.00 3.41
51 52 6.367969 TGAAAAACGTAGATCCTAAAGCTGAC 59.632 38.462 0.00 0.00 0.00 3.51
52 53 6.460781 TGAAAAACGTAGATCCTAAAGCTGA 58.539 36.000 0.00 0.00 0.00 4.26
53 54 6.721571 TGAAAAACGTAGATCCTAAAGCTG 57.278 37.500 0.00 0.00 0.00 4.24
54 55 6.539103 GGATGAAAAACGTAGATCCTAAAGCT 59.461 38.462 0.00 0.00 31.51 3.74
55 56 6.315393 TGGATGAAAAACGTAGATCCTAAAGC 59.685 38.462 0.00 0.00 34.74 3.51
56 57 7.843490 TGGATGAAAAACGTAGATCCTAAAG 57.157 36.000 0.00 0.00 34.74 1.85
57 58 7.662258 TGTTGGATGAAAAACGTAGATCCTAAA 59.338 33.333 0.00 0.00 34.74 1.85
58 59 7.162761 TGTTGGATGAAAAACGTAGATCCTAA 58.837 34.615 0.00 0.00 34.74 2.69
59 60 6.703319 TGTTGGATGAAAAACGTAGATCCTA 58.297 36.000 0.00 0.00 34.74 2.94
60 61 5.556915 TGTTGGATGAAAAACGTAGATCCT 58.443 37.500 0.00 0.00 34.74 3.24
61 62 5.411669 ACTGTTGGATGAAAAACGTAGATCC 59.588 40.000 0.00 0.00 34.31 3.36
62 63 6.481954 ACTGTTGGATGAAAAACGTAGATC 57.518 37.500 0.00 0.00 0.00 2.75
63 64 6.877611 AACTGTTGGATGAAAAACGTAGAT 57.122 33.333 0.00 0.00 0.00 1.98
64 65 7.711772 TCTTAACTGTTGGATGAAAAACGTAGA 59.288 33.333 2.69 0.00 0.00 2.59
65 66 7.857569 TCTTAACTGTTGGATGAAAAACGTAG 58.142 34.615 2.69 0.00 0.00 3.51
66 67 7.041644 CCTCTTAACTGTTGGATGAAAAACGTA 60.042 37.037 2.69 0.00 0.00 3.57
67 68 6.238648 CCTCTTAACTGTTGGATGAAAAACGT 60.239 38.462 2.69 0.00 0.00 3.99
68 69 6.142817 CCTCTTAACTGTTGGATGAAAAACG 58.857 40.000 2.69 0.00 0.00 3.60
69 70 6.447162 CCCTCTTAACTGTTGGATGAAAAAC 58.553 40.000 2.69 0.00 0.00 2.43
70 71 5.010617 GCCCTCTTAACTGTTGGATGAAAAA 59.989 40.000 2.69 0.00 0.00 1.94
71 72 4.522789 GCCCTCTTAACTGTTGGATGAAAA 59.477 41.667 2.69 0.00 0.00 2.29
72 73 4.079253 GCCCTCTTAACTGTTGGATGAAA 58.921 43.478 2.69 0.00 0.00 2.69
73 74 3.686016 GCCCTCTTAACTGTTGGATGAA 58.314 45.455 2.69 0.00 0.00 2.57
74 75 2.354704 CGCCCTCTTAACTGTTGGATGA 60.355 50.000 2.69 0.00 0.00 2.92
75 76 2.009774 CGCCCTCTTAACTGTTGGATG 58.990 52.381 2.69 0.00 0.00 3.51
76 77 1.628846 ACGCCCTCTTAACTGTTGGAT 59.371 47.619 2.69 0.00 0.00 3.41
77 78 1.053424 ACGCCCTCTTAACTGTTGGA 58.947 50.000 2.69 0.98 0.00 3.53
78 79 1.804748 GAACGCCCTCTTAACTGTTGG 59.195 52.381 2.69 0.00 0.00 3.77
79 80 2.223377 GTGAACGCCCTCTTAACTGTTG 59.777 50.000 2.69 0.00 0.00 3.33
80 81 2.104281 AGTGAACGCCCTCTTAACTGTT 59.896 45.455 0.00 0.00 0.00 3.16
81 82 1.692519 AGTGAACGCCCTCTTAACTGT 59.307 47.619 0.00 0.00 0.00 3.55
82 83 2.069273 CAGTGAACGCCCTCTTAACTG 58.931 52.381 0.00 0.00 0.00 3.16
83 84 1.002087 CCAGTGAACGCCCTCTTAACT 59.998 52.381 0.00 0.00 0.00 2.24
84 85 1.439679 CCAGTGAACGCCCTCTTAAC 58.560 55.000 0.00 0.00 0.00 2.01
85 86 0.323629 CCCAGTGAACGCCCTCTTAA 59.676 55.000 0.00 0.00 0.00 1.85
86 87 0.543410 TCCCAGTGAACGCCCTCTTA 60.543 55.000 0.00 0.00 0.00 2.10
87 88 1.415672 TTCCCAGTGAACGCCCTCTT 61.416 55.000 0.00 0.00 0.00 2.85
88 89 1.415672 TTTCCCAGTGAACGCCCTCT 61.416 55.000 0.00 0.00 31.05 3.69
89 90 0.322546 ATTTCCCAGTGAACGCCCTC 60.323 55.000 0.00 0.00 31.05 4.30
90 91 0.322546 GATTTCCCAGTGAACGCCCT 60.323 55.000 0.00 0.00 31.05 5.19
91 92 1.313091 GGATTTCCCAGTGAACGCCC 61.313 60.000 0.00 0.00 31.05 6.13
92 93 2.180674 GGATTTCCCAGTGAACGCC 58.819 57.895 0.00 0.00 31.05 5.68
102 103 8.918346 CAAATGTTTGTTGGGAGGGATTTCCC 62.918 46.154 7.62 7.62 43.47 3.97
103 104 2.604139 TGTTTGTTGGGAGGGATTTCC 58.396 47.619 0.00 0.00 36.46 3.13
104 105 4.890158 AATGTTTGTTGGGAGGGATTTC 57.110 40.909 0.00 0.00 0.00 2.17
105 106 4.202451 CCAAATGTTTGTTGGGAGGGATTT 60.202 41.667 4.92 0.00 41.64 2.17
106 107 3.327464 CCAAATGTTTGTTGGGAGGGATT 59.673 43.478 4.92 0.00 41.64 3.01
107 108 2.905736 CCAAATGTTTGTTGGGAGGGAT 59.094 45.455 4.92 0.00 41.64 3.85
108 109 2.324541 CCAAATGTTTGTTGGGAGGGA 58.675 47.619 4.92 0.00 41.64 4.20
109 110 1.270785 GCCAAATGTTTGTTGGGAGGG 60.271 52.381 5.41 0.00 44.87 4.30
110 111 1.415659 TGCCAAATGTTTGTTGGGAGG 59.584 47.619 5.41 0.00 44.87 4.30
111 112 2.906691 TGCCAAATGTTTGTTGGGAG 57.093 45.000 5.41 0.00 44.87 4.30
112 113 3.853355 ATTGCCAAATGTTTGTTGGGA 57.147 38.095 5.41 0.00 44.87 4.37
113 114 4.640364 ACTATTGCCAAATGTTTGTTGGG 58.360 39.130 5.41 0.00 44.87 4.12
115 116 7.643371 GGAAAAACTATTGCCAAATGTTTGTTG 59.357 33.333 10.45 0.00 36.45 3.33
116 117 7.201776 GGGAAAAACTATTGCCAAATGTTTGTT 60.202 33.333 10.45 8.00 40.26 2.83
117 118 6.262049 GGGAAAAACTATTGCCAAATGTTTGT 59.738 34.615 10.45 6.51 40.26 2.83
118 119 6.486320 AGGGAAAAACTATTGCCAAATGTTTG 59.514 34.615 10.45 0.00 42.75 2.93
119 120 6.600388 AGGGAAAAACTATTGCCAAATGTTT 58.400 32.000 5.65 5.65 42.75 2.83
120 121 6.186420 AGGGAAAAACTATTGCCAAATGTT 57.814 33.333 0.47 0.00 42.75 2.71
121 122 5.823861 AGGGAAAAACTATTGCCAAATGT 57.176 34.783 0.47 0.00 42.75 2.71
122 123 5.997129 ACAAGGGAAAAACTATTGCCAAATG 59.003 36.000 0.47 0.00 42.75 2.32
123 124 6.186420 ACAAGGGAAAAACTATTGCCAAAT 57.814 33.333 0.47 0.00 42.75 2.32
124 125 5.622346 ACAAGGGAAAAACTATTGCCAAA 57.378 34.783 0.47 0.00 42.75 3.28
125 126 5.622346 AACAAGGGAAAAACTATTGCCAA 57.378 34.783 0.47 0.00 42.75 4.52
126 127 5.622346 AAACAAGGGAAAAACTATTGCCA 57.378 34.783 0.47 0.00 42.75 4.92
127 128 6.935741 AAAAACAAGGGAAAAACTATTGCC 57.064 33.333 0.00 0.00 40.79 4.52
150 151 3.379452 AGTGGGGGTGATTCAACAAAAA 58.621 40.909 3.73 0.00 0.00 1.94
151 152 3.039252 AGTGGGGGTGATTCAACAAAA 57.961 42.857 3.73 0.00 0.00 2.44
152 153 2.697751 CAAGTGGGGGTGATTCAACAAA 59.302 45.455 3.73 0.00 0.00 2.83
153 154 2.315176 CAAGTGGGGGTGATTCAACAA 58.685 47.619 3.73 0.00 0.00 2.83
154 155 1.993956 CAAGTGGGGGTGATTCAACA 58.006 50.000 3.73 0.00 0.00 3.33
155 156 0.603065 GCAAGTGGGGGTGATTCAAC 59.397 55.000 0.00 0.00 0.00 3.18
156 157 0.541764 GGCAAGTGGGGGTGATTCAA 60.542 55.000 0.00 0.00 0.00 2.69
157 158 1.076549 GGCAAGTGGGGGTGATTCA 59.923 57.895 0.00 0.00 0.00 2.57
158 159 1.076549 TGGCAAGTGGGGGTGATTC 59.923 57.895 0.00 0.00 0.00 2.52
159 160 1.228862 GTGGCAAGTGGGGGTGATT 60.229 57.895 0.00 0.00 0.00 2.57
160 161 2.142292 GAGTGGCAAGTGGGGGTGAT 62.142 60.000 0.00 0.00 0.00 3.06
161 162 2.776526 AGTGGCAAGTGGGGGTGA 60.777 61.111 0.00 0.00 0.00 4.02
162 163 2.282462 GAGTGGCAAGTGGGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
163 164 3.953775 CGAGTGGCAAGTGGGGGT 61.954 66.667 0.00 0.00 0.00 4.95
164 165 4.722700 CCGAGTGGCAAGTGGGGG 62.723 72.222 0.00 0.00 0.00 5.40
165 166 3.612247 CTCCGAGTGGCAAGTGGGG 62.612 68.421 0.00 0.00 34.14 4.96
166 167 1.541310 TACTCCGAGTGGCAAGTGGG 61.541 60.000 11.52 0.00 34.14 4.61
167 168 0.108615 CTACTCCGAGTGGCAAGTGG 60.109 60.000 11.52 0.00 34.14 4.00
168 169 3.425578 CTACTCCGAGTGGCAAGTG 57.574 57.895 11.52 0.00 34.14 3.16
174 175 1.202428 GCTAAAGGCTACTCCGAGTGG 60.202 57.143 11.52 9.46 40.77 4.00
175 176 1.202428 GGCTAAAGGCTACTCCGAGTG 60.202 57.143 11.52 2.83 41.46 3.51
176 177 1.112950 GGCTAAAGGCTACTCCGAGT 58.887 55.000 6.25 6.25 41.46 4.18
177 178 0.389757 GGGCTAAAGGCTACTCCGAG 59.610 60.000 3.36 0.00 41.46 4.63
178 179 0.324923 TGGGCTAAAGGCTACTCCGA 60.325 55.000 3.36 0.00 41.46 4.55
179 180 0.105039 CTGGGCTAAAGGCTACTCCG 59.895 60.000 3.36 0.00 41.46 4.63
180 181 1.414550 CTCTGGGCTAAAGGCTACTCC 59.585 57.143 3.36 0.00 41.46 3.85
181 182 1.202592 GCTCTGGGCTAAAGGCTACTC 60.203 57.143 3.36 0.00 41.46 2.59
182 183 0.833949 GCTCTGGGCTAAAGGCTACT 59.166 55.000 3.36 0.00 41.46 2.57
183 184 0.530870 CGCTCTGGGCTAAAGGCTAC 60.531 60.000 0.00 0.00 41.46 3.58
184 185 0.976073 ACGCTCTGGGCTAAAGGCTA 60.976 55.000 0.00 0.00 41.46 3.93
185 186 1.842381 AACGCTCTGGGCTAAAGGCT 61.842 55.000 0.00 0.00 41.46 4.58
186 187 1.369839 GAACGCTCTGGGCTAAAGGC 61.370 60.000 0.00 0.00 39.13 4.35
187 188 0.036388 TGAACGCTCTGGGCTAAAGG 60.036 55.000 0.00 0.00 39.13 3.11
188 189 1.079503 GTGAACGCTCTGGGCTAAAG 58.920 55.000 0.00 0.00 39.13 1.85
189 190 0.669318 CGTGAACGCTCTGGGCTAAA 60.669 55.000 0.00 0.00 39.13 1.85
190 191 1.080093 CGTGAACGCTCTGGGCTAA 60.080 57.895 0.00 0.00 39.13 3.09
191 192 1.974875 TCGTGAACGCTCTGGGCTA 60.975 57.895 0.00 0.00 39.60 3.93
192 193 3.303135 TCGTGAACGCTCTGGGCT 61.303 61.111 0.00 0.00 39.60 5.19
193 194 3.112709 GTCGTGAACGCTCTGGGC 61.113 66.667 0.00 0.00 39.60 5.36
194 195 2.805353 CGTCGTGAACGCTCTGGG 60.805 66.667 0.00 0.00 45.76 4.45
208 209 2.435059 GCTGGGAAGCTGACCGTC 60.435 66.667 0.00 0.00 0.00 4.79
235 236 4.570663 CATCTCGTCGGACGGGCC 62.571 72.222 28.07 0.00 42.90 5.80
237 238 2.558554 AAAGCATCTCGTCGGACGGG 62.559 60.000 28.07 26.07 44.98 5.28
240 241 2.853003 GTCTTAAAGCATCTCGTCGGAC 59.147 50.000 0.00 0.00 0.00 4.79
261 272 2.034558 ACCGTTGGATGAAAACAGCAAG 59.965 45.455 0.00 0.00 0.00 4.01
266 277 4.517453 CCTCTTAACCGTTGGATGAAAACA 59.483 41.667 0.00 0.00 0.00 2.83
271 282 1.065709 GCCCTCTTAACCGTTGGATGA 60.066 52.381 0.00 0.00 0.00 2.92
279 290 0.794473 GTTGAACGCCCTCTTAACCG 59.206 55.000 0.00 0.00 0.00 4.44
294 305 2.031465 GGAGGGGTTTCGCGTTGA 59.969 61.111 5.77 0.00 0.00 3.18
297 308 4.016706 CTGGGAGGGGTTTCGCGT 62.017 66.667 5.77 0.00 33.11 6.01
300 311 3.204467 TTGGCTGGGAGGGGTTTCG 62.204 63.158 0.00 0.00 0.00 3.46
308 319 0.251297 TGGTGAATGTTGGCTGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
311 322 1.411977 TGTTTGGTGAATGTTGGCTGG 59.588 47.619 0.00 0.00 0.00 4.85
316 327 6.757947 AGAAGAATGTTGTTTGGTGAATGTTG 59.242 34.615 0.00 0.00 0.00 3.33
320 331 6.877236 ACAAGAAGAATGTTGTTTGGTGAAT 58.123 32.000 0.00 0.00 39.82 2.57
330 341 8.749499 GTGATTCAGAAAACAAGAAGAATGTTG 58.251 33.333 0.00 0.00 39.98 3.33
332 343 8.133627 CAGTGATTCAGAAAACAAGAAGAATGT 58.866 33.333 0.00 0.00 0.00 2.71
335 346 6.460123 GGCAGTGATTCAGAAAACAAGAAGAA 60.460 38.462 0.00 0.00 0.00 2.52
338 349 4.644234 TGGCAGTGATTCAGAAAACAAGAA 59.356 37.500 0.00 0.00 0.00 2.52
339 350 4.036734 GTGGCAGTGATTCAGAAAACAAGA 59.963 41.667 0.00 0.00 0.00 3.02
345 356 2.294233 GCAAGTGGCAGTGATTCAGAAA 59.706 45.455 0.00 0.00 43.97 2.52
347 358 1.527034 GCAAGTGGCAGTGATTCAGA 58.473 50.000 0.00 0.00 43.97 3.27
348 359 2.155048 TGGCAAGTGGCAGTGATTCAG 61.155 52.381 3.02 0.00 46.12 3.02
376 387 1.522580 GCTAAAGGCTGCTCCGGAG 60.523 63.158 27.83 27.83 40.77 4.63
377 388 2.584608 GCTAAAGGCTGCTCCGGA 59.415 61.111 2.93 2.93 40.77 5.14
378 389 2.514824 GGCTAAAGGCTGCTCCGG 60.515 66.667 0.00 0.00 41.46 5.14
379 390 2.514824 GGGCTAAAGGCTGCTCCG 60.515 66.667 0.00 0.00 41.46 4.63
380 391 1.452833 CTGGGCTAAAGGCTGCTCC 60.453 63.158 0.00 0.00 41.46 4.70
381 392 0.463474 CTCTGGGCTAAAGGCTGCTC 60.463 60.000 0.00 0.00 41.46 4.26
382 393 1.606531 CTCTGGGCTAAAGGCTGCT 59.393 57.895 0.00 0.00 41.46 4.24
383 394 2.117779 GCTCTGGGCTAAAGGCTGC 61.118 63.158 3.36 0.00 41.46 5.25
384 395 0.747283 CTGCTCTGGGCTAAAGGCTG 60.747 60.000 0.00 0.00 42.39 4.85
500 520 4.893424 TCGTCTTTTGGACTTTTTGGAG 57.107 40.909 0.00 0.00 42.44 3.86
504 524 5.126384 TGGTTCATCGTCTTTTGGACTTTTT 59.874 36.000 0.00 0.00 42.44 1.94
519 539 1.154413 GTGCTTGCGTGGTTCATCG 60.154 57.895 0.00 0.00 0.00 3.84
573 593 2.686106 TTACGAGGGTGGGAGGCC 60.686 66.667 0.00 0.00 0.00 5.19
574 594 2.582978 GTTACGAGGGTGGGAGGC 59.417 66.667 0.00 0.00 0.00 4.70
612 645 6.808829 TCATGGTGAATAAGAAAATGATGGC 58.191 36.000 0.00 0.00 0.00 4.40
679 712 5.530915 CAGAGACGGGCCAATGATTAATAAA 59.469 40.000 4.39 0.00 0.00 1.40
681 714 4.641396 CAGAGACGGGCCAATGATTAATA 58.359 43.478 4.39 0.00 0.00 0.98
686 719 1.153086 GCAGAGACGGGCCAATGAT 60.153 57.895 4.39 0.00 0.00 2.45
688 721 2.110967 CAGCAGAGACGGGCCAATG 61.111 63.158 4.39 0.00 0.00 2.82
689 722 2.270205 CAGCAGAGACGGGCCAAT 59.730 61.111 4.39 0.00 0.00 3.16
690 723 4.704833 GCAGCAGAGACGGGCCAA 62.705 66.667 4.39 0.00 0.00 4.52
693 726 4.074526 TCTGCAGCAGAGACGGGC 62.075 66.667 21.85 0.00 35.39 6.13
694 727 2.125753 GTCTGCAGCAGAGACGGG 60.126 66.667 26.08 0.00 41.46 5.28
696 729 1.906757 CTAAGTCTGCAGCAGAGACG 58.093 55.000 26.08 10.52 43.95 4.18
697 730 1.639280 GCTAAGTCTGCAGCAGAGAC 58.361 55.000 26.08 15.61 41.46 3.36
699 732 1.419874 GCGCTAAGTCTGCAGCAGAG 61.420 60.000 26.08 14.70 41.46 3.35
700 733 1.446792 GCGCTAAGTCTGCAGCAGA 60.447 57.895 21.85 21.85 38.25 4.26
701 734 1.018226 AAGCGCTAAGTCTGCAGCAG 61.018 55.000 17.10 17.10 37.66 4.24
702 735 0.246360 TAAGCGCTAAGTCTGCAGCA 59.754 50.000 12.05 0.00 37.66 4.41
703 736 1.325943 CTTAAGCGCTAAGTCTGCAGC 59.674 52.381 12.05 4.26 33.52 5.25
728 827 2.611518 CGTGTCCTGGAAACATCTCTC 58.388 52.381 16.99 0.00 41.51 3.20
729 828 1.276421 CCGTGTCCTGGAAACATCTCT 59.724 52.381 16.99 0.00 41.51 3.10
839 941 2.676471 AAAGCGATGGTGGGTGGC 60.676 61.111 0.00 0.00 0.00 5.01
1107 1231 2.566010 CGCACGGGGAAACATTGG 59.434 61.111 0.00 0.00 0.00 3.16
1324 1462 1.972198 CTGGTCAGCCGGTGAGTTA 59.028 57.895 1.90 0.00 35.13 2.24
1397 1545 1.400494 GTCACAGCAGACCAAAAACGT 59.600 47.619 0.00 0.00 32.36 3.99
1403 1551 0.107897 AACACGTCACAGCAGACCAA 60.108 50.000 0.00 0.00 35.07 3.67
1414 1562 3.059166 CTGATCACATCACAACACGTCA 58.941 45.455 0.00 0.00 35.06 4.35
1417 1565 2.669924 CCTCTGATCACATCACAACACG 59.330 50.000 0.00 0.00 35.06 4.49
1421 1569 1.065199 GGCCCTCTGATCACATCACAA 60.065 52.381 0.00 0.00 35.06 3.33
1659 1807 1.707106 TAGGAACGGGACAAGACACA 58.293 50.000 0.00 0.00 0.00 3.72
1660 1808 2.496470 AGATAGGAACGGGACAAGACAC 59.504 50.000 0.00 0.00 0.00 3.67
1687 1835 9.314133 AGTATATGGCATCTAAGACTGAATGTA 57.686 33.333 1.65 0.00 0.00 2.29
1702 1850 6.209589 CCGGTATATAGCAGAGTATATGGCAT 59.790 42.308 12.21 4.88 29.95 4.40
1703 1851 5.535030 CCGGTATATAGCAGAGTATATGGCA 59.465 44.000 12.21 0.00 29.95 4.92
1705 1853 6.515200 GCACCGGTATATAGCAGAGTATATGG 60.515 46.154 6.87 4.39 29.95 2.74
1706 1854 6.439599 GCACCGGTATATAGCAGAGTATATG 58.560 44.000 6.87 0.00 29.95 1.78
1707 1855 5.238868 CGCACCGGTATATAGCAGAGTATAT 59.761 44.000 6.87 0.00 31.73 0.86
1708 1856 4.573607 CGCACCGGTATATAGCAGAGTATA 59.426 45.833 6.87 0.00 0.00 1.47
1728 1879 2.301870 AGTCAGTCAATTTAGGGACGCA 59.698 45.455 0.00 0.00 39.01 5.24
1750 1901 5.874261 TGTTTAGCACCGGGTAATTACTTAC 59.126 40.000 15.05 5.67 36.90 2.34
1768 1920 6.307155 CACAGCTCCGAACTAATTTGTTTAG 58.693 40.000 6.72 6.56 42.62 1.85
1779 1931 1.005630 GACAGCACAGCTCCGAACT 60.006 57.895 0.00 0.00 36.40 3.01
1785 1937 4.409570 CATTGTAAATGACAGCACAGCTC 58.590 43.478 0.00 0.00 39.88 4.09
1832 1988 3.139077 GGATCCATAAACCTTACTGGCG 58.861 50.000 6.95 0.00 40.22 5.69
1878 2034 6.706270 GTCTTCTACAAAAGGATCAACAGTGA 59.294 38.462 0.00 0.00 38.41 3.41
1879 2035 6.708054 AGTCTTCTACAAAAGGATCAACAGTG 59.292 38.462 0.00 0.00 0.00 3.66
1952 2109 6.230472 TCATGAGTTAACACTAACAGCATGT 58.770 36.000 8.61 0.00 43.35 3.21
2014 2171 4.922206 TGATCTGAATGTAGCCCAAAGTT 58.078 39.130 0.00 0.00 0.00 2.66
2015 2172 4.574674 TGATCTGAATGTAGCCCAAAGT 57.425 40.909 0.00 0.00 0.00 2.66
2060 2218 0.111639 TGGCCAGGAACAAGGTAACC 59.888 55.000 0.00 0.00 37.17 2.85
2109 2267 9.725019 CCACTTTGCCACAATTATCTATATCTA 57.275 33.333 0.00 0.00 0.00 1.98
2156 2314 0.459489 TGGCACCAACAGCTGAAAAC 59.541 50.000 23.35 4.20 0.00 2.43
2396 2574 4.883585 TGTCAGATTTTCAACAGCAGAAGT 59.116 37.500 0.00 0.00 0.00 3.01
2438 2618 5.570320 AGGTAGGCACAACAAATAGAACAT 58.430 37.500 0.00 0.00 0.00 2.71
2458 2638 0.823356 ATGCAACACGGAGCAAAGGT 60.823 50.000 0.00 0.00 44.88 3.50
2459 2639 0.314935 AATGCAACACGGAGCAAAGG 59.685 50.000 0.00 0.00 44.88 3.11
2460 2640 2.987413 TAATGCAACACGGAGCAAAG 57.013 45.000 0.00 0.00 44.88 2.77
2461 2641 4.006989 AGTATAATGCAACACGGAGCAAA 58.993 39.130 0.00 0.00 44.88 3.68
2468 2648 9.472995 CTTTTAACTGTAGTATAATGCAACACG 57.527 33.333 0.00 0.00 0.00 4.49
2471 2651 7.638683 CGGCTTTTAACTGTAGTATAATGCAAC 59.361 37.037 0.00 0.00 0.00 4.17
2480 2660 7.966246 TGAATTTCGGCTTTTAACTGTAGTA 57.034 32.000 0.00 0.00 0.00 1.82
2481 2661 6.870971 TGAATTTCGGCTTTTAACTGTAGT 57.129 33.333 0.00 0.00 0.00 2.73
2482 2662 9.834628 TTATTGAATTTCGGCTTTTAACTGTAG 57.165 29.630 0.00 0.00 0.00 2.74
2491 2671 9.034544 GCATCTTAATTATTGAATTTCGGCTTT 57.965 29.630 0.00 0.00 36.62 3.51
2492 2672 8.196771 TGCATCTTAATTATTGAATTTCGGCTT 58.803 29.630 0.00 0.00 36.62 4.35
2493 2673 7.715657 TGCATCTTAATTATTGAATTTCGGCT 58.284 30.769 0.00 0.00 36.62 5.52
2494 2674 7.928908 TGCATCTTAATTATTGAATTTCGGC 57.071 32.000 0.00 0.00 36.62 5.54
2495 2675 9.681692 TGATGCATCTTAATTATTGAATTTCGG 57.318 29.630 26.32 0.00 36.62 4.30
2509 2689 7.509141 TTTCTGAAACAGTGATGCATCTTAA 57.491 32.000 26.32 4.61 32.61 1.85
2606 2846 6.830324 TGAGCTTGAATTTGAATACATAGGCT 59.170 34.615 0.00 0.00 0.00 4.58
2649 2889 9.487442 AAATTTATCTAAAATCCAGCTGGGTAA 57.513 29.630 32.23 14.29 38.11 2.85
2690 2930 0.038744 ACCAAGGCAACAGATCCAGG 59.961 55.000 0.00 0.00 41.41 4.45
2809 3057 8.776376 ACATCTCAGAAACAACAACAAAAATT 57.224 26.923 0.00 0.00 0.00 1.82
2816 3064 6.852853 CACACATACATCTCAGAAACAACAAC 59.147 38.462 0.00 0.00 0.00 3.32
2819 3067 5.617751 GCCACACATACATCTCAGAAACAAC 60.618 44.000 0.00 0.00 0.00 3.32
2820 3068 4.455533 GCCACACATACATCTCAGAAACAA 59.544 41.667 0.00 0.00 0.00 2.83
2822 3070 4.256920 AGCCACACATACATCTCAGAAAC 58.743 43.478 0.00 0.00 0.00 2.78
2823 3071 4.223700 AGAGCCACACATACATCTCAGAAA 59.776 41.667 0.00 0.00 0.00 2.52
2824 3072 3.771479 AGAGCCACACATACATCTCAGAA 59.229 43.478 0.00 0.00 0.00 3.02
2825 3073 3.131755 CAGAGCCACACATACATCTCAGA 59.868 47.826 0.00 0.00 0.00 3.27
2851 3099 5.953571 AGGGTTTTACAAGAAGAATGGAGT 58.046 37.500 0.00 0.00 0.00 3.85
2969 3218 8.936864 GCAGAGCAGTTAAGAACTTAAGATTTA 58.063 33.333 10.09 2.14 40.46 1.40
2970 3219 7.445402 TGCAGAGCAGTTAAGAACTTAAGATTT 59.555 33.333 10.09 3.09 40.46 2.17
3053 3306 6.429385 AGAACAAAACTGAGGAAAGCAGATAG 59.571 38.462 0.00 0.00 36.86 2.08
3120 3373 2.642311 TGGTCAAGCAAGATTGTCCCTA 59.358 45.455 10.83 0.00 37.51 3.53
3121 3374 1.425066 TGGTCAAGCAAGATTGTCCCT 59.575 47.619 10.83 0.00 37.51 4.20
3144 3491 9.561270 GATAAAAACAAATCTAGAAGGAACTGC 57.439 33.333 0.00 0.00 40.86 4.40
3151 3498 9.358872 GCCTTTGGATAAAAACAAATCTAGAAG 57.641 33.333 0.00 0.00 36.16 2.85
3166 3513 4.158394 GTGAGAAAGCATGCCTTTGGATAA 59.842 41.667 15.66 0.00 43.64 1.75
3213 3563 0.682209 CATCCTTGGGGTCAGCCTTG 60.682 60.000 0.00 0.00 34.45 3.61
3276 3626 5.422331 CACCTTCTCAAAGTACCTATCAGGA 59.578 44.000 0.00 0.00 37.67 3.86
3321 3671 2.939103 GGAGTTCTCATCGGTTCCATTG 59.061 50.000 2.24 0.00 0.00 2.82
3369 3719 0.471780 TCAGCTTCAGGTCCACCTCA 60.472 55.000 0.00 0.00 46.65 3.86
3402 3752 3.181454 GGGGAACACTGTTTCTCTTCTGA 60.181 47.826 0.07 0.00 0.00 3.27
3411 3761 1.518367 TCTCCAGGGGAACACTGTTT 58.482 50.000 0.00 0.00 34.16 2.83
3527 3883 3.825014 TCTCCGGTCGAGATATAAAAGGG 59.175 47.826 0.00 0.00 42.97 3.95
3543 3901 0.916809 ACCAGGGGTTTATTCTCCGG 59.083 55.000 0.00 0.00 27.29 5.14
3558 3918 3.812053 GCAGATCTAACCTTGCATACCAG 59.188 47.826 0.00 0.00 0.00 4.00
3607 3982 6.804770 TCGTAAAGCATATCTCTCTCTACC 57.195 41.667 0.00 0.00 0.00 3.18
3608 3983 8.035165 TCATCGTAAAGCATATCTCTCTCTAC 57.965 38.462 0.00 0.00 0.00 2.59
3610 3985 6.714810 ACTCATCGTAAAGCATATCTCTCTCT 59.285 38.462 0.00 0.00 0.00 3.10
3611 3986 6.908825 ACTCATCGTAAAGCATATCTCTCTC 58.091 40.000 0.00 0.00 0.00 3.20
3612 3987 6.488344 TGACTCATCGTAAAGCATATCTCTCT 59.512 38.462 0.00 0.00 0.00 3.10
3613 3988 6.673106 TGACTCATCGTAAAGCATATCTCTC 58.327 40.000 0.00 0.00 0.00 3.20
3620 3995 3.534554 TGCATGACTCATCGTAAAGCAT 58.465 40.909 0.00 0.00 0.00 3.79
3652 4028 2.275510 CACACGCGAACATCTAAGTACG 59.724 50.000 15.93 0.00 0.00 3.67
3666 4042 0.512518 TCTTCTGCATTTCACACGCG 59.487 50.000 3.53 3.53 0.00 6.01
3699 4077 6.959639 AGATTTTCAGGCTTACAGAAAACA 57.040 33.333 11.30 0.00 42.09 2.83
3724 4102 5.926542 GCAATACAGAGTTACAGACACAAGA 59.073 40.000 0.00 0.00 0.00 3.02
3730 4108 4.434520 GGAGGCAATACAGAGTTACAGAC 58.565 47.826 0.00 0.00 0.00 3.51
3732 4110 3.119101 ACGGAGGCAATACAGAGTTACAG 60.119 47.826 0.00 0.00 0.00 2.74
3734 4112 3.521947 ACGGAGGCAATACAGAGTTAC 57.478 47.619 0.00 0.00 0.00 2.50
3736 4114 3.369157 GGTAACGGAGGCAATACAGAGTT 60.369 47.826 0.00 0.00 0.00 3.01
3737 4115 2.167900 GGTAACGGAGGCAATACAGAGT 59.832 50.000 0.00 0.00 0.00 3.24
3774 5852 1.474330 ACCCGATTCAATTCAAGCCC 58.526 50.000 0.00 0.00 0.00 5.19
3777 5855 6.002062 GGCTATTACCCGATTCAATTCAAG 57.998 41.667 0.00 0.00 0.00 3.02
3803 5881 0.603569 AATCGGAAGACTCGCACACT 59.396 50.000 0.00 0.00 46.97 3.55
3805 5883 0.888619 AGAATCGGAAGACTCGCACA 59.111 50.000 0.00 0.00 46.97 4.57
3806 5884 1.272781 CAGAATCGGAAGACTCGCAC 58.727 55.000 0.00 0.00 46.97 5.34
3826 6191 3.726517 CTGGCAACCAAGACGCGG 61.727 66.667 12.47 0.00 30.80 6.46
3899 6265 6.440436 GGAAGATCGACTTATAAGAGGTGAC 58.560 44.000 19.38 5.99 39.13 3.67
3916 6286 0.249405 CTCTCTGCTGGCGGAAGATC 60.249 60.000 3.97 0.00 0.00 2.75
3936 6306 3.130516 TGAAGCGGTGTAGAATAGGTGAG 59.869 47.826 0.00 0.00 0.00 3.51
3994 6547 2.659897 CCATCGCGAGCAGCTACC 60.660 66.667 16.66 0.00 45.59 3.18
4070 6638 2.100631 GTCGCAGTCACAATCCCGG 61.101 63.158 0.00 0.00 0.00 5.73
4480 7052 3.906660 CAGGCTTAGAACCACGACA 57.093 52.632 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.